evoldeeplogo
evoldeeplogo
evoldeeplogo

Crenarchaeota | core genome | pan genome

Back to evoldeep Home Page





1- Selecting right cut-off parameters for reciprocal blast (range= 50-100% alignment length and 0.4->1 (bitscore/ max bitscore) ratio)

Similarity Levels for Pairwise Comparisons of Genes:




2- Extracting homologous gene sets : 50-100% alignment length and 0.4->1 (bitscore/ max bitscore) ratio

Nitrosopumilus + Cenarchaeum common genes sets (id)
Nmar = 1110 genes + Censya = 1088 genes

Nitrosopumilus + Cenarchaeum homologous genes sets : 1048 groups (clean, no duplicated data)

Nitrosopumilus + Cenarchaeum homologous genes sets with gene DEFINITION

Nitrosopumilus + Cenarchaeum + Nitrosoarchaeum common genes sets (id)
Nmar = 1042 genes + Censya = 1020 genes + Nlim = 1045 genes

Nitrosopumilus + Cenarchaeum + Nitrosoarchaeum homologous genes sets : 978 groups (clean, no duplicated data)

Nitrosopumilus + Cenarchaeum + Nitrosoarchaeum homologous genes sets with gene DEFINITION

Nitrosopumilus + Cenarchaeum + Nitrosoarchaeum + Caldiarchaeum common genes sets (id)
Nmar = 178 genes + Censya = 176 genes + Nlim = 189 genes + Caldi = 236 genes

Nitrosopumilus + Cenarchaeum + Nitrosoarchaeum + Caldiarchaeum homologous genes sets : 161 groups (clean, no duplicated data)

Nitrosopumilus + Cenarchaeum + Nitrosoarchaeum + Caldiarchaeum homologous genes sets with gene DEFINITION




3- Homologous gene sets intersection (Venn) diagrams

Venn diagram image

Text results