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Pyrococcus abyssi
>PAB0424 rpoA1 DNA-directed RNA polymerase, subunit A`
MQSVKKVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAKAGECPGHFGHIELA
RPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLELAKNRRSEVNKILKEIHKKARERMVCPHCGAPQYPIKFE
KPTIYWELRKDEQGNEYKHRMMPTEIRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTARPSITLETGIRAEDD
LTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLS
GKRVNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVIDPEGRRIRIMESNRE
NLARMIDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAE
ARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGVDIKELPEPDKYENGKPLWSGKTIFS
LLLPDDLTVWYRNKLCDEPERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAYGREDGIILDLIVRE
YGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEEARDRIKEIIREAEERVQKLIEAYKRGELEPLPGKTLEETLES
KIMAVLAEARDNAGSIAEKYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARA
KGFVVNSYKSGLSPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGVIVQFRYGEDGVDPM
KSWGGKTVDVDRVIMRTLIKMRANNKG

Supplementary options
Additional orf sequence data See Genomic Environment
Search GenBank with PSI-Blast at NCBI Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE Search CDD Database at LBMGE
Determine COG functional Category (microbial) Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base
__________ GenBank id: 14520831 Gene name: rpoA1 COG: K COG0086 DNA-directed RNA polymerase, beta’ subunit/160 kD subunit Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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