LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB0627 appA oligopeptide-binding protein appA precursor MHTLEVQRMKKLVAAIVVGLFILSISAQHYVVAGEIQLPRNETLYVGGGLWSQPNNFNPTVSWAAVTGTIGLIYETLFIY DPLKDKLEPWLAESGKWISDNTYRVVLKEGLTWQDGKPLTAEDVKFTFDYAKEHKGLSYSPIWGWLKEVKVVDNRTVDFI FSEPHYEEWKYWLYNIAIIPEHIWKNIDKPESFANTENPIGSGMYKLYKTDQMRFILVRNDKWWGIKYYGKPAPKYIVYV IVYSNNLALSMLVKGDLDWSNFFIPGVPDVKAKYGIVTWYDKQPYHLPINTAFLFLNTQKPPLNNPMFRRAIAYAINPKE IAARASQNQVKPADPTGLLIDYPVFKKIYYPEAVKKYGFTYDPAKANEILDQLGYKDINGDGYRETPDGKPLKFTIEVPY GWTDWMEMARVISEQLQMVGIRVDPKFPDYGKYWDDLTKGNFDMIINNFGSQVYATPWQWFNWVFYPDVAPIGKPTYSGN WGRYKNERVAELLRLINTEKDENKKIQYYHELQEIFLKDLPYIPLIYNGAWFEASTQYWTNWPTEHNPYALPITWQNYWQ MGGLKVLLNIKPAKATTTSSPTTTPTKTTSSPTSTPTPTQTPSTSSPTATSTSPTETTTKGGICGPALLVGIAVVPILLR KRRK

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14521143 Gene name: appA COG: E COG0747 ABC-type dipeptide transport system, periplasmic component Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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