LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB1195 dppC-1 dipeptide transport system permease protein dppC or oligopeptide transport system permease protein oppC MRWVDIKDSLANFWFEFRRQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLPWEDTPKAVPPVWYNWFAGESLAPHK LYTINDVKMLNKGDDLGGGVRYYKFEFKYDFNYDVPPSNIIIKGIDIRLQDINTKANLVITVHRPDGKSVEVYSGDFMEG MVIQLASDDIARSNIISWASQYESRSNLDKVVPTIVDVMKVLFGKAQTGILINPEPLKGTYTFDVELYTFNPEDQVNFDN LKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTLP ILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALS VPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRRL

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14521948 Gene name: appC COG: EP COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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