LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB1817 lhr-1 large helicase-related protein MHILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLE RLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLI LNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWE IVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQY MSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNV HEPYRMAKETYPYRNLKWEHYLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDE NFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTLLYDPRKAPDLIK GVEFNGEELELALNSLKQNTLIPSDRDIIITVLPDTVIIHSDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHA PFKMNPNEVKEILLKDYDTKTIISKTIRDSTVYRWKMINVAKRMGALSKRARIRNVQKLFEGTIIEVETLNEVFHDKVDV QKVEEVLKLIAKGEIRITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQRIMDSSIVMVCTNCGFSWETKVGR VINRVRELECPKCGSIMLAPLHPKDAELFKVALKKLKHGEKLSRNEERAYIKGLKAADLLKSYKDKALLALGTYGVGVET ASRVLSKASEKELIKELIKLERQYIRTKKFWD

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14521025 Gene name: lhr-1 COG: R COG1201 Lhr-like helicases Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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