Current Annotation for element: L35501_KM3_173_A5c1ALL

NamestartendSimlevelBestmatchDescriptionInteinStart codonStrandStatusGene NameECGene ProductCommentItem typeCOG #COG FunctionCoding probPhylo DomainAuthorTimeMore Comments
namestartcoordendcoord**deintronstart1directionstatusgnecgpcctype1kognumkogglimmerdompatauth10/10/03 00:00:00More Comments 
                    10/10/03 00:00:00  
LUAcid_KM3_A5_161867219310  phosphoribosylglycinamide formyltransferase (PurN) 1DADDED   - purin biosynthesis operonPROTEINCOG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurNF Nucleotide transport and metabolismGood 82.227.62.18021/09/07 06:25:36- environment conserved in acidobacteria - to be verified - match to 41b15 
LUAcid_KM3_A5_151753518623  phosphoribosylformylglycinamidine cyclo ligase (PurM) 1DADDED   - purin biosynthesis operonPROTEINCOG0150 Phosphoribosylaminoimidazole (AIR) synthetaseF Nucleotide transport and metabolismGood 82.227.62.18021/09/07 06:59:06- environment conserved in acidobacteria - to be verified - match to soil clone 
LUAcid_KM3_A5_141592717090  hypothetical protein 1DADDED   - purin biosynthesis operon ? - conserved in Acidobacteria - no COG - IPR011989 Armadillo-like helical domainPROTEIN  Goodunique82.227.62.18021/09/07 07:06:32- environment conserved in acidobacteria - to be verified - match to 41b15 
LUAcid_KM3_A5_131450615927  amidophosphoribosyltransferase (PurF) 1DADDED   - purin biosynthesis operonPROTEINCOG0034 Glutamine phosphoribosylpyrophosphate amidotransferaseF Nucleotide transport and metabolismGood 82.227.62.18021/09/07 07:09:28- environment conserved in acidobacteria - to be verified - match to soil clones 
LUAcid_KM3_A5_121226014515  phosphoribosylformylglycinamidine synthase II 1DADDED   - purin biosynthesis operonPROTEINCOG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domainF Nucleotide transport and metabolismGood 82.227.62.18021/09/07 07:10:09- environment conserved in acidobacteria - to be verified - match to soil clones 
LUAcid_KM3_A5_111144112130  phosphoribosylformylglycinamidine synthase I (PurQ) 1DADDED   - purin biosynthesis operonPROTEINCOG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domainF Nucleotide transport and metabolismGood 82.227.62.18021/09/07 07:12:09- environment conserved in acidobacteria - to be verified - match to soil clones 
LUAcid_KM3_A5_101109511352  phosphoribosylformylglycinamidine synthase (PurS) 1DADDED   - purin biosynthesis operonPROTEINCOG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS componentF Nucleotide transport and metabolism- 82.227.62.18021/09/07 07:20:10- environment conserved in acidobacteria - to be verified - match to soil clones 
LUAcid_KM3_A5_091071511053  adenylosuccinate lyase (PurB) (C-terminal) 1DADDED   - purin biosynthesis operon - frameshift with adjacent ORFPROTEINCOG0015 Adenylosuccinate lyaseF Nucleotide transport and metabolismGood but overlapping 82.227.62.18021/09/07 07:23:30- environment conserved in acidobacteria - to be verified - match to soil clones 
LUAcid_KM3_A5_08975910778  adenylosuccinate lyase (PurB) (N-terminal) 1DADDED   - purin biosynthesis operon - frameshift with adjacent ORFPROTEINCOG0015 Adenylosuccinate lyaseF Nucleotide transport and metabolismGood 82.227.62.18021/09/07 07:23:48- environment conserved in acidobacteria - to be verified - match to soil clones 
LUAcid_KM3_A5_0788769694  metallo-beta-lactamase family protein 1DADDED    PROTEINCOG1235 Metal-dependent hydrolases of the beta-lactamase superfamily IR General function prediction onlyGoodABE82.227.62.18021/09/07 07:27:30- no matches in other acidobacteria 
LUAcid_KM3_A5_0675928845  peptidase M16 domain proteinn1DADDED   - best matches to acidobacterial soil clone proteins (57% id) - length OKPROTEINCOG0612 Predicted Zn-dependent peptidasesR General function prediction onlyGood 82.227.62.18021/09/07 07:31:51- match to 23k22 and 41b15 - environment conserved? - to be verified 
LUAcid_KM3_A5_0574316373  Radical SAM domain protein 1RADDED   - conserved in B - IPR004383 Conserved hypothetical protein 48 domain: This family of conserved hypothetical proteins groups bacterial proteins of unknown function - TIGR00048: radical SAM enzyme, Cfr familyPROTEIN  Good but overlappingB82.227.62.18021/09/07 08:06:06- matches in 23k22 and 41b15 - no matches to other acidobacterial clones or in genomes 
LUAcid_KM3_A5_0450616314  protein of unknown function UPF0004 1DADDED   - IPR005839 - MiaB-like tRNA modifying enzyme domain - relationship to purin biosynthesis operon? - lenght OkPROTEINCOG0621 2-methylthioadenine synthetaseJ Translation, ribosomal structure and biogenesisGood 82.227.62.18021/09/07 08:12:19- best matches to 41b15 and 23k22 - environment conserved? - to be verified 
LUAcid_KM3_A5_0348523215  conserved hypothetical protein 1RADDED   - best match to Solibactyer amidohydrolase (58% id) - Zn-dependent exopeptidases - low matches to A and E - match to aminobenzoyl-glutamate utilization protein B in uncultured Bacteria (Delong) (environment?)PROTEINCOG1473 Metal-dependent amidase/aminoacylase/carboxypeptidaseR General function prediction onlyGoodB82.227.62.18021/09/07 08:22:29- match to Solibacter - other acidobacteria to be verified - environment? 
LUAcid_KM3_A5_0229481467  Na+/H+ antiporter NhaC 1RADDED   - best match to Shewanella woodyi ATCC (50% id) - lenght OkPROTEINCOG1757 Na+/H+ antiporterC Energy production and conversionGood 82.227.62.18021/09/07 08:25:12- no matches to Acidobacteria - to be verified 
LUAcid_KM3_A5_01132489  tetracycline-efflux transporter 1RADDED   - best match to tetracycline-efflux transporter Rhodopirellula baltica (63% id) - high number of matches to vectors with tetracyclin resistence - not in A and E - PR001958 Tetracycline resistance protein, TetA: This entry represents the tetracycline resistance protein Tet(A), a tetracycline efflux protein that functions as a metal-tetracycline/H+ antiporter [5, 6] - length seems to be shorter as others, but it is not at the end of the clone, length should be OkPROTEINCOG0477 Permeases of the major facilitator superfamilyG Carbohydrate transport and metabolismGoodB82.227.62.18021/09/07 08:38:28- environment to be verified 
LUAcid_KM3_A5_171939920463  tyrosyl-tRNA synthetase (truncated) 1DADDED 6.1.1.1 - best match acidobacterial soil clone - considering the environment: PurM, PurN, tRNA synthetase, 16S, 23S, 5S, hyp, hyp, FAD linked oxidase on clone G1; the contig A5c1 should be adjacent (position 1) to A5c2 (position 1) lacking 600bpPROTEINCOG0162 Tyrosyl-tRNA synthetaseJ Translation, ribosomal structure and biogenesisGood 82.227.62.18002/10/07 09:04:19- best match to soil clone - present in other acidobacterial clones - environment conserved? - to be verified