| Name | start | end | Simlevel | Bestmatch | Description | Intein | Start codon | Strand | Status | Gene Name | EC | Gene Product | Comment | Item type | COG # | COG Function | Coding prob | Phylo Domain | Author | Time | More Comments |
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| name | startcoord | endcoord | * | * | de | intron | start1 | direction | status | gn | ec | gp | cc | type1 | kognum | kog | glimmer | dompat | auth | 10/10/03 00:00:00 | More Comments | |
| | | | | | | | | | | | | | | | | | | | | 10/10/03 00:00:00 | | |
| LUAcid_KM3_A5_16 | 18672 | 19310 | | | phosphoribosylglycinamide formyltransferase (PurN) | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 06:25:36 | - environment conserved in acidobacteria - to be verified - match to 41b15 | |
| LUAcid_KM3_A5_15 | 17535 | 18623 | | | phosphoribosylformylglycinamidine cyclo ligase (PurM) | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG0150 Phosphoribosylaminoimidazole (AIR) synthetase | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 06:59:06 | - environment conserved in acidobacteria - to be verified - match to soil clone | |
| LUAcid_KM3_A5_14 | 15927 | 17090 | | | hypothetical protein | | 1 | D | ADDED | | | | - purin biosynthesis operon ? - conserved in Acidobacteria - no COG - IPR011989 Armadillo-like helical domain | PROTEIN | | | Good | unique | 82.227.62.180 | 21/09/07 07:06:32 | - environment conserved in acidobacteria - to be verified - match to 41b15 | |
| LUAcid_KM3_A5_13 | 14506 | 15927 | | | amidophosphoribosyltransferase (PurF) | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 07:09:28 | - environment conserved in acidobacteria - to be verified - match to soil clones | |
| LUAcid_KM3_A5_12 | 12260 | 14515 | | | phosphoribosylformylglycinamidine synthase II | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 07:10:09 | - environment conserved in acidobacteria - to be verified - match to soil clones | |
| LUAcid_KM3_A5_11 | 11441 | 12130 | | | phosphoribosylformylglycinamidine synthase I (PurQ) | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 07:12:09 | - environment conserved in acidobacteria - to be verified - match to soil clones | |
| LUAcid_KM3_A5_10 | 11095 | 11352 | | | phosphoribosylformylglycinamidine synthase (PurS) | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component | F Nucleotide transport and metabolism | - | | 82.227.62.180 | 21/09/07 07:20:10 | - environment conserved in acidobacteria - to be verified - match to soil clones | |
| LUAcid_KM3_A5_09 | 10715 | 11053 | | | adenylosuccinate lyase (PurB) (C-terminal) | | 1 | D | ADDED | | | | - purin biosynthesis operon - frameshift with adjacent ORF | PROTEIN | COG0015 Adenylosuccinate lyase | F Nucleotide transport and metabolism | Good but overlapping | | 82.227.62.180 | 21/09/07 07:23:30 | - environment conserved in acidobacteria - to be verified - match to soil clones | |
| LUAcid_KM3_A5_08 | 9759 | 10778 | | | adenylosuccinate lyase (PurB) (N-terminal) | | 1 | D | ADDED | | | | - purin biosynthesis operon - frameshift with adjacent ORF | PROTEIN | COG0015 Adenylosuccinate lyase | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 07:23:48 | - environment conserved in acidobacteria - to be verified - match to soil clones | |
| LUAcid_KM3_A5_07 | 8876 | 9694 | | | metallo-beta-lactamase family protein | | 1 | D | ADDED | | | | | PROTEIN | COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I | R General function prediction only | Good | ABE | 82.227.62.180 | 21/09/07 07:27:30 | - no matches in other acidobacteria | |
| LUAcid_KM3_A5_06 | 7592 | 8845 | | | peptidase M16 domain protein | n | 1 | D | ADDED | | | | - best matches to acidobacterial soil clone proteins (57% id) - length OK | PROTEIN | COG0612 Predicted Zn-dependent peptidases | R General function prediction only | Good | | 82.227.62.180 | 21/09/07 07:31:51 | - match to 23k22 and 41b15 - environment conserved? - to be verified | |
| LUAcid_KM3_A5_05 | 7431 | 6373 | | | Radical SAM domain protein | | 1 | R | ADDED | | | | - conserved in B - IPR004383 Conserved hypothetical protein 48 domain: This family of conserved hypothetical proteins groups bacterial proteins of unknown function - TIGR00048: radical SAM enzyme, Cfr family | PROTEIN | | | Good but overlapping | B | 82.227.62.180 | 21/09/07 08:06:06 | - matches in 23k22 and 41b15 - no matches to other acidobacterial clones or in genomes | |
| LUAcid_KM3_A5_04 | 5061 | 6314 | | | protein of unknown function UPF0004 | | 1 | D | ADDED | | | | - IPR005839 - MiaB-like tRNA modifying enzyme domain - relationship to purin biosynthesis operon? - lenght Ok | PROTEIN | COG0621 2-methylthioadenine synthetase | J Translation, ribosomal structure and biogenesis | Good | | 82.227.62.180 | 21/09/07 08:12:19 | - best matches to 41b15 and 23k22 - environment conserved? - to be verified | |
| LUAcid_KM3_A5_03 | 4852 | 3215 | | | conserved hypothetical protein | | 1 | R | ADDED | | | | - best match to Solibactyer amidohydrolase (58% id) - Zn-dependent exopeptidases - low matches to A and E - match to aminobenzoyl-glutamate utilization protein B in uncultured Bacteria (Delong) (environment?) | PROTEIN | COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase | R General function prediction only | Good | B | 82.227.62.180 | 21/09/07 08:22:29 | - match to Solibacter - other acidobacteria to be verified - environment? | |
| LUAcid_KM3_A5_02 | 2948 | 1467 | | | Na+/H+ antiporter NhaC | | 1 | R | ADDED | | | | - best match to Shewanella woodyi ATCC (50% id) - lenght Ok | PROTEIN | COG1757 Na+/H+ antiporter | C Energy production and conversion | Good | | 82.227.62.180 | 21/09/07 08:25:12 | - no matches to Acidobacteria - to be verified | |
| LUAcid_KM3_A5_01 | 1324 | 89 | | | tetracycline-efflux transporter | | 1 | R | ADDED | | | | - best match to tetracycline-efflux transporter Rhodopirellula baltica (63% id) - high number of matches to vectors with tetracyclin resistence - not in A and E - PR001958 Tetracycline resistance protein, TetA: This entry represents the tetracycline resistance protein Tet(A), a tetracycline efflux protein that functions as a metal-tetracycline/H+ antiporter [5, 6] - length seems to be shorter as others, but it is not at the end of the clone, length should be Ok | PROTEIN | COG0477 Permeases of the major facilitator superfamily | G Carbohydrate transport and metabolism | Good | B | 82.227.62.180 | 21/09/07 08:38:28 | - environment to be verified | |
| LUAcid_KM3_A5_17 | 19399 | 20463 | | | tyrosyl-tRNA synthetase (truncated) | | 1 | D | ADDED | | 6.1.1.1 | | - best match acidobacterial soil clone - considering the environment: PurM, PurN, tRNA synthetase, 16S, 23S, 5S, hyp, hyp, FAD linked oxidase on clone G1; the contig A5c1 should be adjacent (position 1) to A5c2 (position 1) lacking 600bp | PROTEIN | COG0162 Tyrosyl-tRNA synthetase | J Translation, ribosomal structure and biogenesis | Good | | 82.227.62.180 | 2/10/07 09:04:19 | - best match to soil clone - present in other acidobacterial clones - environment conserved? - to be verified |