| name | startcoord | endcoord | * | * | de | intron | start1 | direction | status | gn | ec | gp | cc | type1 | kognum | kog | glimmer | dompat | auth | 10/10/03 00:00:00 | More Comments | |
| | | | | | | | | | | | | | | | | | | | | 10/10/03 00:00:00 | | |
| LUAcid_KM3_D9_13 | 11607 | 12443 | | | beta-lactamase-like protein | | 1 | D | ADDED | | | | - best match euryarchaeote: eta-lactamase domain protein, Candidatus Methanoregula boonei 6A8 (40% id), then bacteria - also COG0324 - seems to be part of purin operon | PROTEIN | COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I | R General function prediction only | Good | BE | 82.227.62.180 | 18/09/07 09:15:26 | - paralogs on different clones LUAcid_KM3_G1_01 LUAcid_KM3_D9_13 LUAcid_AD106_G4_08 L35498_AD55_D2_360 LUAcid_KM4_H7_24 | |
| LUAcid_KM3_D9_14 | 12455 | 13765 | | | adenylosuccinate lyase (PurB) | | 1 | D | ADDED | | | | - best match to KM3_187_G1_032 (81% id) - next match 23k22_016 (71% id) - purine ribonucleotide biosynthetic process | PROTEIN | COG0015 Adenylosuccinate lyase | F Nucleotide transport and metabolism | Good | ABE | 82.227.62.180 | 18/09/07 11:24:15 | - orthologs found in other clones: LUAcid_KM3_G1_02 LUAcid_KM3_D9_14 L35498_AD55_D2_353 LUAcid_AD106_G4_09 LUAcid_KM4_H7_25 23k22_016 PurB (AY281356 soil clone) 41b15_012 PurB (AY281352 soil clone) | |
| LUAcid_KM3_D9_15 | 13765 | 14001 | | | phosphoribosylformylglycinamidine synthase I (PurS) | | 1 | D | ADDED | | | | - best match to AD55_D2_340 (81% id) - purin biosynthesis pathway | PROTEIN | COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component | F Nucleotide transport and metabolism | - | AB | 82.227.62.180 | 18/09/07 11:44:17 | - orthologs on other acidobacterial clones: LUAcid_KM3_G1_03 L35498_AD55_D2_340 LUAcid_KM3_D9_15 LUAcid_AD106_G4_10 LUAcid_KM4_H7_26 23k22_011 PurS AY281352 41b15_015 PurS AY281356 | |
| LUAcid_KM3_D9_17 | 14810 | 17026 | | | phosphoribosylformylglycinamidine synthase II (PurL) | | 1 | D | ADDED | | 6.3.5.3 | | best match to KM3_187_G1_074 (76% id) - purin biosynthesis operon - AIR synthase related protein - ’de novo’ IMP biosynthetic process - hosphoribosylformylglycinamidine synthase is a single, long polypeptide in most bacteria. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II. | PROTEIN | COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain | F Nucleotide transport and metabolism | Good | AB | 82.227.62.180 | 18/09/07 13:54:06 | several orthologs in Acidobacteria: LUAcid_KM3_G1_06 LUAcid_KM3_D9_17 L35498_AD55_D2_328 LUAcid_AD106_G4_12 LUAcid_KM4_H7_28 L35511_KM3_47_B8_428 23k22_009 PurL AY281352 41b15_013 PurL AY281356 Acid_5944 Acid345_4622 | |
| LUAcid_KM3_D9_18 | 17040 | 18503 | | | amidophosphoribosyl transferase (PurF) | | 1 | D | ADDED | | 2.4.2.14 | | - best match to KM3_187_G1_086 (88% id) - purin biosynthesis operon - also COG0449 | PROTEIN | COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase | F Nucleotide transport and metabolism | Good | ABE | 82.227.62.180 | 18/09/07 15:34:08 | several othologs in Acidobacteria LUAcid_KM3_G1_07 LUAcid_KM3_D9_18 L35511_KM3_47_B8_405 L35498_AD55_D2_302 LUAcid_AD106_G4_13 LUAcid_KM4_H7_29 41b15_012 PurF AY281356 23k22_008 PurF AY281352 Acid345_4621 Acid_5945 | |
| LUAcid_KM3_D9_09 | 6542 | 7591 | | | YVTN repeat-like/Quinoprotein amine dehydrogenase | | 1 | D | ADDED | | | | - best match to Acid_2447 (46% id) - IPR001258 NHL repeat subgroup - motive in Proteases and monooxygenases | PROTEIN | COG3391 Uncharacterized conserved protein | S Function unknown | Good | ABE | 82.227.62.180 | 18/09/07 16:49:30 | - one match to Solibacter, not Ellin6706 | |
| LUAcid_KM3_D9_19 | 18503 | 19705 | | | hypothetical protein | | 1 | D | ADDED | | | | - no COG | PROTEIN | | | Good | | 82.227.62.180 | 21/09/07 09:23:38 | - best matches to Acidobacteria, also soil clone - environment conserved - to be verified | |
| LUAcid_KM3_D9_20 | 19722 | 20756 | | | phosphoribosylformylglycinamidine cyclo ligase (PurM) | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG0150 Phosphoribosylaminoimidazole (AIR) synthetase | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 09:28:42 | - best matches to Acidobacteria, also soil clone - environment conserved - to be verified | |
| LUAcid_KM3_D9_21 | 20783 | 21382 | | | phosphoribosylglycinamide formyltransferase (PurN) | | 1 | D | ADDED | | | | purin biosynthesis operon | PROTEIN | COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 09:34:29 | - environment conserved in Acidobacteria - also in soil clones - to be verified | |
| LUAcid_KM3_D9_22 | 21474 | 22715 | | | tyrosyl-tRNA synthetase (TyrS) | | 1 | D | ADDED | | 6.1.1.1 | | | PROTEIN | COG0162 Tyrosyl-tRNA synthetase | J Translation, ribosomal structure and biogenesis | Good | ABE | 82.227.62.180 | 21/09/07 09:38:05 | - environment conserved in acidobacteria | |
| LUAcid_KM3_D9_23 | 28510 | 29244 | | | hypothetical protein | | 1 | D | ADDED | | | | - no COG | PROTEIN | | | Good | | 82.227.62.180 | 21/09/07 09:45:05 | - one match to Acid345_1727 - environment conserved in acidobacterial clones - to be verified | |
| LUAcid_KM3_D9_25 | 30284 | 31792 | | | hypothetical protein | | 1 | D | ADDED | | | | - no COG | PROTEIN | | | Good | | 82.227.62.180 | 21/09/07 09:47:59 | - one match to acidobacterial clones - environment conserved in acidobacterial clones - to be verified | |
| LUAcid_KM3_D9_26 | 31832 | 33277 | | | FAD linked oxidase | | 1 | D | ADDED | | | | identity - D-lactat dehydrogenase (cytochrome) - FAD/FMN- containing dehydrogenase (GlcD) | PROTEIN | COG0277 FAD/FMN-containing dehydrogenases | C Energy production and conversion | Good | | 82.227.62.180 | 21/09/07 09:51:41 | - environment conserved in Acidobacteria - to be verified | |
| LUAcid_KM3_D9_27 | 33280 | 34560 | | | FAD linked oxidase-like protein | | 1 | D | ADDED | | | | | PROTEIN | COG0277 FAD/FMN-containing dehydrogenases | C Energy production and conversion | Good | | 82.227.62.180 | 21/09/07 09:59:40 | - environment conserved in Acidobacteria - to be verified | |
| LUAcid_KM3_D9_28 | 35909 | 34584 | | | protein of unknown function DUF224, cysteine-rich region | | 1 | R | ADDED | | | | | PROTEIN | | C Energy production and conversion | Good | | 82.227.62.180 | 21/09/07 10:02:25 | - environment conserved in Acidobacteria - to be verified | |
| LUAcid_KM3_D9_29 | 36026 | 37003 | | | NADPH:quinone reductase | | 1 | D | ADDED | | | | - electron transport operon like structure | PROTEIN | COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases | C Energy production and conversion | Good | | 82.227.62.180 | 21/09/07 10:04:58 | - environment conserved in Acidobacteria - to be verified | |
| LUAcid_KM3_D9_30 | 37024 | 37491 | | | Endoribonuclease L-PSP | | 1 | D | ADDED | | | | - also COG0024 | PROTEIN | COG0251 Putative translation initiation inhibitor, yjgF family | J Translation, ribosomal structure and biogenesis | Good | | 82.227.62.180 | 21/09/07 10:08:37 | - environment conserved in Acidobacteria - to be verified | |
| LUAcid_KM3_D9_16 | 14001 | 14708 | | | phosphoribosylformylglycinamidine synthase I (PurQ) | | 1 | D | ADDED | | | | - purin biosynthesis operon | PROTEIN | COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain | F Nucleotide transport and metabolism | Good | | 82.227.62.180 | 21/09/07 10:36:51 | - environment conserved in Acidobacteria - to be verified | |
| LUAcid_KM3_D9_24 | 30222 | 29254 | | | Alcohol dehydrogenase GroES domain protein | | 1 | R | ADDED | | | | - best match to Crenarchaeota: Candidatus Nitrosopumilus maritimus SCM1 (49% id) - IPR002085 Alcohol dehydrogenase superfamily, zinc-containing | PROTEIN | COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases | E Amino acid transport and metabolism | Good | A | 82.227.62.180 | 23/09/07 17:10:22 | - several matches in both acidobacterial genomes - orthologs in acidobacterial clones - to be verified | |
| LUAcid_KM3_D9_12 | 10311 | 11567 | | | peptidase M16 domain protein | | 1 | D | ADDED | | | | | PROTEIN | COG0612 Predicted Zn-dependent peptidases | R General function prediction only | Good | | 82.227.62.180 | 24/09/07 08:01:29 | - matches to acidobacterial clones - to be verified - near to purin biosynthesis operon? | |
| LUAcid_KM3_D9_11 | 10162 | 9038 | | | radical SAM enzyme, Cfr family | | 1 | R | ADDED | | | | - also IPR004383 Conserved hypothetical protein 48 - matches in Bacteria and a few in E | PROTEIN | COG0820 Predicted Fe-S-cluster redox enzyme | R General function prediction only | Good but overlapping | B | 82.227.62.180 | 24/09/07 08:05:50 | - matches in acidobacterial clones - environment conserved in acidobacteria - to be verified | |
| LUAcid_KM3_D9_10 | 7719 | 9011 | | | MiaB-like tRNA modifying enzyme | | 1 | D | ADDED | | | | - also IPR005839 Protein of unknown function UPF0004 | PROTEIN | COG0621 2-methylthioadenine synthetase | J Translation, ribosomal structure and biogenesis | Good | | 82.227.62.180 | 24/09/07 08:08:04 | - matches in acidobacterial clones - environment conserved in acidobacteria - to be verified | |
| LUAcid_KM3_D9_08 | 6423 | 4915 | | | Na+/H+ antiporter NhaC | | 1 | R | ADDED | | | | - IPR004770 Na+/H+ antiporter NhaC | PROTEIN | COG1757 Na+/H+ antiporter | C Energy production and conversion | Good | B | 82.227.62.180 | 24/09/07 08:11:43 | - matches in acidobacterial clones G4 and D2; match in Solibacter, not in Acid Ellin6076 - environment conserved in acidobacteria - to be verified | |
| LUAcid_KM3_D9_07 | 4236 | 4874 | | | hypothetical protein | | 1 | D | ADDED | | | | - no COG | PROTEIN | | | Good | | 82.227.62.180 | 24/09/07 08:16:54 | - matches to KM3_205_D9_412 and 373 on the same clone paralog? - also similarity to AD106_G4_503 - environment conserved in acidobacteria? - to be verified | |
| LUAcid_KM3_D9_03 | 1135 | 1707 | | | hypothetical protein | | 1 | D | ADDED | | | | | PROTEIN | | | Good | | 82.227.62.180 | 24/09/07 08:19:17 | - matches to KM3_205_D9_412 and 373 on the same clone paralog? - also similarity to AD106_G4_503 - environment conserved in acidobacteria? - to be verified | |
| LUAcid_KM3_D9_06 | 4172 | 3198 | | | hypothetical protein | | 1 | R | ADDED | | | | - no COG - very few matches | PROTEIN | | | Good | | 82.227.62.180 | 24/09/07 08:22:18 | - low match to 41b15_006 | |
| LUAcid_KM3_D9_05 | 2183 | 3181 | | | ApbE family lipoprotein | | 1 | D | ADDED | | | | - Thiamin biosynthesis - This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis [1]. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine. | PROTEIN | COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis | H Coenzyme transport and metabolism | Good | B | 82.227.62.180 | 24/09/07 08:30:17 | - ortholog to AD106_G4_021 (57% id) - low matches in Solibacter, not in Acidobacterium | |
| LUAcid_KM3_D9_04 | 1707 | 2183 | | | hypothetical protein | | 1 | D | ADDED | | | | - no matches - no COG - no InterPro | PROTEIN | | | Good | | 82.227.62.180 | 24/09/07 08:33:47 | - ortholog to AD106_G4_007 (77% id) - environment conserved on the two clones? - to be verified | |
| LUAcid_KM3_D9_02 | 201 | 1121 | | | hypothetical protein (truncated) | | 1 | D | ADDED | | | | - N-terminal truncated of ca. 120aa - best match to hypothetical protein Anae109_2247 Anaeromyxobacter sp. Fw109-5 (28% id) | PROTEIN | | | Good | | 82.227.62.180 | 24/09/07 08:38:51 | - no matches to Acidobacteria | |
| LUAcid_KM3_D9_01 | 14 | 343 | | | hypothetical protein | | 1 | D | ADDED | | | | - no matches with similar length | PROTEIN | | | - | | 82.227.62.180 | 24/09/07 08:44:58 | - only one match in Acidobacteria: Acid345_0034 type I antifreeze protein but only on a short region | |
| LUACID_KM3_D9_16SRNA | 23017 | 24585 | | | 16S ribosomal RNA | | 1 | D | ADDED | 16SrRNA | | | | RNA | | | | | 129.175.105.75 | 29/10/07 17:48:55 | | |
| LUACID_KM3_D9_23SRNA | 25085 | 27962 | | | 23S ribosomal RNA | | 1 | D | ADDED | 23SrRNA | | | | RNA | | | | | 129.175.105.75 | 29/10/07 17:49:36 | | |
| LUACID_KM3_D9_5SRNA | 28219 | 28341 | | | 5S ribosomal RNA | | 1 | D | ADDED | 5SrRNA | | | | RNA | | | | | 129.175.105.75 | 29/10/07 17:49:53 | | |
| LUACID_KM3_D9_TRNA1 | 24697 | 24770 | | | tRNA-Ile (GAT) | | 1 | D | ADDED | tRNA-Ile | | | | TRNA | | | | | 129.175.105.75 | 29/10/07 17:50:51 | | |
| LUACID_KM3_D9_TRNA2 | 24785 | 24857 | | | tRNA-Ala (TGC) | | 1 | D | ADDED | tRNA-Ala | | | | TRNA | | | | | 129.175.105.75 | 29/10/07 17:51:57 | | |
| LUACID_KM3_D9_29 | 36026 | 37003 | | | alcohol dehydrogenase, GroES and Zn-binding domain | | 1 | D | ADDED | | | | - electron transport operon like structure | PROTEIN | COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases | C Energy production and conversion | Good | | 82.227.62.180 | 13/12/07 17:33:22 | - environment conserved in Acidobacteria - to be verified | |
| LUACID_KM3_D9_26 | 31832 | 33277 | | | Glycolate oxidase subunit (GlcD) | | 1 | D | ADDED | | | | identity - D-lactat dehydrogenase (cytochrome) - FAD/FMN- containing dehydrogenase (GlcD) | PROTEIN | COG0277 FAD/FMN-containing dehydrogenases | C Energy production and conversion | Good | | 82.227.62.180 | 13/12/07 17:34:41 | - environment conserved in Acidobacteria - to be verified | |
| LUACID_KM3_D9_27 | 33280 | 34560 | | | Glycolate oxidase subunit (GlcE) | | 1 | D | ADDED | | | | | PROTEIN | COG0277 FAD/FMN-containing dehydrogenases | C Energy production and conversion | Good | | 82.227.62.180 | 13/12/07 17:35:24 | - environment conserved in Acidobacteria - to be verified | |
| LUACID_KM3_D9_28 | 35909 | 34584 | | | Glycolate oxidase subunit (GlcF) | | 1 | R | ADDED | | | | | PROTEIN | | C Energy production and conversion | Good | | 82.227.62.180 | 13/12/07 17:35:58 | - environment conserved in Acidobacteria - to be verified | |
| LUACID_KM3_D9_28 | 35909 | 34584 | | | Glycolate oxidase subunit (GlcF) | | 1 | R | ADDED | GlcF | | | | PROTEIN | COG0247 Fe-S oxidoreductase | C Energy production and conversion | Good | | 129.175.105.75 | 17/12/07 16:35:47 | - environment conserved in Acidobacteria - to be verified fixed COG/ gN -yz |