ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0055 good T KOG3797 Signal transduction mechanisms Peripheral-type benzodiazepine receptor and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI0055   17582  18064 161  
         (161 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

7296190 [T] KOG3797 Peripheral-type benzodiazepine receptor and ...    97   7e-21
Hs4502481 [T] KOG3797 Peripheral-type benzodiazepine receptor an...    79   2e-15
SPBC725.10 [T] KOG3797 Peripheral-type benzodiazepine receptor a...    63   1e-10
Hs22060918 [T] KOG3797 Peripheral-type benzodiazepine receptor a...    56   2e-08

>7296190 [T] KOG3797 Peripheral-type benzodiazepine receptor and related
           proteins
          Length = 185

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 53/141 (37%), Positives = 75/141 (52%), Gaps = 1/141 (0%)

Query: 21  GYSSGLVTRTSVNTWYPTLIKPWFTPPNKLFPIAWSSLYLVMGIAAGIVWSHASK-GNKL 79
           G  +G +TR  + +WY  L  P F PPN +F   W SLY  MG  + +VW        + 
Sbjct: 24  GIYNGRLTRQHLQSWYANLKFPSFKPPNSVFAPMWISLYAGMGYGSYLVWRDGGGFAGEA 83

Query: 80  AATGLKHFAVQFGLNMLWSYLFFGLKSPGLGLIEVTALWFSIYKTWSVFTLVDPTAGWLM 139
           A   L  +  Q  LN  W+ +FFG  +   GLI++ AL  +      +F  V+ TAG L 
Sbjct: 84  AKLPLIAYGTQLALNWAWTPIFFGQHNIKGGLIDIVALTAAASACGVLFYRVNKTAGLLF 143

Query: 140 VPYLSWVSYATVLNASIWWLN 160
           VPY++W+ +AT LN +IW LN
Sbjct: 144 VPYVAWLGFATALNYAIWKLN 164


>Hs4502481 [T] KOG3797 Peripheral-type benzodiazepine receptor and related
           proteins
          Length = 169

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 39/123 (31%), Positives = 61/123 (48%)

Query: 35  WYPTLIKPWFTPPNKLFPIAWSSLYLVMGIAAGIVWSHASKGNKLAATGLKHFAVQFGLN 94
           WY  L KP + PP+ +    W +LY  MG  + +VW       + A   L  +  Q  LN
Sbjct: 33  WYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALN 92

Query: 95  MLWSYLFFGLKSPGLGLIEVTALWFSIYKTWSVFTLVDPTAGWLMVPYLSWVSYATVLNA 154
             W  +FFG +  G  L+++  +  +   T   +  V P A  L+ PYL+W+++AT LN 
Sbjct: 93  WAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFATTLNY 152

Query: 155 SIW 157
            +W
Sbjct: 153 CVW 155


>SPBC725.10 [T] KOG3797 Peripheral-type benzodiazepine receptor and related
           proteins
          Length = 162

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 15/129 (11%)

Query: 36  YPTLIKPWFTPPNKLFPIAWSSLYLVMGIAAGIVWSHASKGNKLAATGLKH-----FAVQ 90
           Y    +P F PP   F  AW+ LYL MG A+ +    A K + L  T         +  Q
Sbjct: 39  YENKKQPKFHPPASAFGPAWTLLYLTMGYASHL----AYKADPLMITNASRNGSILYIAQ 94

Query: 91  FGLNMLWSYLFFGLKSPGLGLIE---VTALWFSIYKTWSVFTLVDPTAGWLMVPYLSWVS 147
              N  W  LF+GL  P L L +   +T L   + KTW       PTA   ++PYL+W+ 
Sbjct: 95  LAANFAWMPLFYGLAKPKLALADLGILTGLVGWLAKTWWPLA---PTASKWLIPYLAWLG 151

Query: 148 YATVLNASI 156
           YA  L +++
Sbjct: 152 YAGYLVSNV 160


>Hs22060918 [T] KOG3797 Peripheral-type benzodiazepine receptor and related
           proteins
          Length = 228

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 26  LVTRTSVNTWYPTLIKPWFTPPNKLFPIAWSSLYLVMGIAAGIVWSHASKG-NKLAATGL 84
           L TR  ++ W        + P  K+  +  +++Y V+G A+ +VW     G     A  L
Sbjct: 79  LFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVVGYASYLVWKDLGGGLGWPLALPL 138

Query: 85  KHFAVQFGLNMLWSYLFFGLKSPGLGLIEVTALWFSIYKTWSVFTLVDPTAGWLMVPYLS 144
             +AVQ  ++     LFF + +PGL L+ +  L+  +  T  ++  ++  A  L++PYL+
Sbjct: 139 GLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLVVSTALIWHPINKLAALLLLPYLA 198

Query: 145 WVSYATVLNASIW 157
           W++  + L   +W
Sbjct: 199 WLTVTSALTYHLW 211


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.324    0.137    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,156,820
Number of Sequences: 60738
Number of extensions: 393510
Number of successful extensions: 933
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 30,389,216
effective HSP length: 98
effective length of query: 63
effective length of database: 24,436,892
effective search space: 1539524196
effective search space used: 1539524196
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)