ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI0252    suspect: Pn   C     KOG0557   Energy production and conversion                               Dihydrolipoamide acetyltransferase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI0252 88820  89287 156 
         (156 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL071w [C] KOG0557 Dihydrolipoamide acetyltransferase                 28   5.0  
Hs4826874 [YU] KOG3630 Nuclear pore complex Nup214/CAN component       27   8.5  
7295779 [R] KOG0490 Transcription factor contains HOX domain           27   8.5  

>YNL071w [C] KOG0557 Dihydrolipoamide acetyltransferase
          Length = 482

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 12  AATPSKASTSLSKVPFPTPPIDGLHEQVPILSKKGVI 48
           AATP+ A++S +    P+P     +E VPI + + +I
Sbjct: 227 AATPAAATSSTTAGSAPSPSSTASYEDVPISTMRSII 263


>Hs4826874 [YU] KOG3630 Nuclear pore complex Nup214/CAN component
          Length = 2090

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 1/46 (2%)

Query: 6    ALSVTLAAT-PSKASTSLSKVPFPTPPIDGLHEQVPILSKKGVISI 50
            A S +L +T P+K S   S   F  PP+ G H + P+ S     S+
Sbjct: 1352 ASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTSSATTTSV 1397


>7295779 [R] KOG0490 Transcription factor contains HOX domain
          Length = 486

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 5   PALSVTLAATPSKASTSLSKVPFPTPPIDGLH---EQVPILSKKG 46
           P  S  L ATP  AS SL  +   +P   G+H   E  P++   G
Sbjct: 299 PLSSNQLTATPHSASQSLGSISAGSPSPSGMHREREHTPLVGGGG 343


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,716,313
Number of Sequences: 60738
Number of extensions: 237798
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 3
length of query: 156
length of database: 30,389,216
effective HSP length: 97
effective length of query: 59
effective length of database: 24,497,630
effective search space: 1445360170
effective search space used: 1445360170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)