ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0341 good L KOG2520 Replication, recombination and repair 5'-3' exonuclease
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0341 120123 118372 -584
(584 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER041w [L] KOG2520 5'-3' exonuclease 221 2e-57
ECU11g0760 [L] KOG2518 5'-3' exonuclease 74 5e-13
YDR263c [L] KOG2518 5'-3' exonuclease 62 2e-09
At3g28030 [L] KOG2520 5'-3' exonuclease 61 5e-09
YGR258c [L] KOG2520 5'-3' exonuclease 58 3e-08
Hs4503601 [L] KOG2520 5'-3' exonuclease 57 8e-08
SPBC29A10.05 [L] KOG2518 5'-3' exonuclease 57 1e-07
YOR033c [L] KOG2518 5'-3' exonuclease 55 3e-07
7295491 [L] KOG2519 5'-3' exonuclease 55 3e-07
ECU09g1620 [L] KOG2520 5'-3' exonuclease 55 4e-07
ECU03g1080 [L] KOG2519 5'-3' exonuclease 54 5e-07
CE22109 [L] KOG2519 5'-3' exonuclease 54 5e-07
7297419 [L] KOG2520 5'-3' exonuclease 54 5e-07
CE28728 [L] KOG2518 5'-3' exonuclease 53 1e-06
7302871 [L] KOG2519 5'-3' exonuclease 53 1e-06
At1g01880 [L] KOG2519 5'-3' exonuclease 53 1e-06
CE01401 [L] KOG2520 5'-3' exonuclease 52 2e-06
At5g26675 [L] KOG2519 5'-3' exonuclease 52 2e-06
Hs4758356 [L] KOG2519 5'-3' exonuclease 52 3e-06
SPAC3G6.06c [L] KOG2519 5'-3' exonuclease 51 4e-06
CE11308 [L] KOG2520 5'-3' exonuclease 51 6e-06
>YER041w [L] KOG2520 5'-3' exonuclease
Length = 759
Score = 221 bits (563), Expect = 2e-57
Identities = 172/602 (28%), Positives = 283/602 (46%), Gaps = 97/602 (16%)
Query: 1 MGSSELWNQISQY-NVPRVAFKQFVAEFVEKNGRFPRIAIDGYLWLFECGYFDE----PQ 55
MG S++W + Y R+ ++FV +F + R PRIAID Y WLFECG+ P+
Sbjct: 1 MGVSQIWEFLKPYLQDSRIPLRKFVIDFNKSQKRAPRIAIDAYGWLFECGFIQNIDISPR 60
Query: 56 NKS------------------------------KTLLNWLRKLKEMLHLQCFIVIIFDGT 85
++S K ++N++ +LKE+L L +++FDG
Sbjct: 61 SRSRSRSPTRSPRDSDIDSSQEYYGSRSYTTTGKAVINFISRLKELLSLNVEFLLVFDGV 120
Query: 86 FKLDGKRR-KKRKVATLWDS---YWLMRSMNRFNHDS-------VSYVDDYIIECCK--- 131
K KR+ + AT D Y+ + NH+ ++ D I +
Sbjct: 121 MKPSFKRKFNHEQNATTCDDEKEYYSSWEQHVKNHEVYGNCKGLLAPSDPEFISLVRKLL 180
Query: 132 -LFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDLPNS 190
L NI + A GEGEAQC +LQ+ G VDF+LSND+D L FG K+LKNYSK P+S
Sbjct: 181 DLMNISYVIACGEGEAQCVWLQVSGAVDFILSNDSDTLVFGGEKILKNYSKFYDDFGPSS 240
Query: 191 SNSPVKSKQN---ERFVTFVDLDII-----KDWDRDRFVLFNLLVGSDYNGGVKGLGGKR 242
S S+ + E FVT +DL I K +DR + F++L+G+DYN GVKGLG +
Sbjct: 241 ITSHSPSRHHDSKESFVTVIDLPKINKVAGKKFDRLSLLFFSVLLGADYNRGVKGLGKNK 300
Query: 243 AAILSKSREPDISKKLPAVLADAKFEE---KAKIQHKWEEFGEDILRTIKKNGKTLFGMN 299
+ L++ +P+ S + + D E+ ++ + ++ F + + K + LFG N
Sbjct: 301 SLQLAQCEDPNFSMEFYDIFKDFNLEDLTSESLRKSRYRLFQKRLYLYCKDHSVELFGRN 360
Query: 300 LKSMNSLSRFKDWPDVTVGLFYRDPIVQNF-----------DLSSKPTHADVKFEEVEAF 348
+ + F+ WP + Y PIVQ + +++ + ++ F E++ F
Sbjct: 361 YPVLLNQGSFEGWPSTVAIMHYFHPIVQPYFDEEVLSDKYINMAGNGHYRNLNFNELKYF 420
Query: 349 MKLNGIPRFLMNFDKWFHEFLHQCFIVSYIWKHPDPFN---GNYRLTEYHEVSLCDGMHQ 405
++ +P+ + +FDKWFH+ +H+ F++ + N GN R+TE +++ G Q
Sbjct: 421 LQSLNLPQ-ISSFDKWFHDSMHEMFLLREFLSIDESDNIGKGNMRITEEKIMNIDGGKFQ 479
Query: 406 YKEVCVRFKSFLFTEIQKEVEGTPKLQNAELPSRARFAKIDSANSPRKSPAKSTILRQKY 465
+R+ +FL + L+ + PSR+ KSP + + ++
Sbjct: 480 IPCFKIRYTTFL---PNIPISSQSPLKRSNSPSRS------------KSPTRRQMDIMEH 524
Query: 466 PYYMWIPTGVIPKSLLIHLDKEIAAAKTSQALRLXXXXXXXXXTRGRSLSPQKNTLDRFL 525
P +W+P +IP+S + I +T Q ++ + R PQKN LD FL
Sbjct: 525 PNSLWLPKYLIPQSHPL----VIQYYETQQLIQKEKEKKGKKSNKSR--LPQKNNLDEFL 578
Query: 526 NK 527
K
Sbjct: 579 RK 580
>ECU11g0760 [L] KOG2518 5'-3' exonuclease
Length = 366
Score = 74.3 bits (181), Expect = 5e-13
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 37/223 (16%)
Query: 36 RIAIDGYLWLFEC-------GYFDEPQNKSKTLLNWLRKLKEMLHLQCFIVIIFDGTF-- 86
R+ +DG+ WL++ +F P + L KL E + VI+ DG
Sbjct: 26 RVGVDGHAWLYQILPCVAEEMFFKVPTKRHVDLFEEKVKLLESYGI--IPVIVLDGDLLS 83
Query: 87 ---KLDGKRRKKRKVATLWDSYWLMRS----MNRFNHDSVSYVDDYIIECCKLF---NIQ 136
+ + KRR +++ + YWLMR+ F ++ + + + ++ N++
Sbjct: 84 SKEETNRKRRIRKEKSRKEAEYWLMRNDPAKAKGFMRQCIAVTREVVSDIARMLERINVE 143
Query: 137 TINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDLPNSSNSPVK 196
I +P E +AQ FLQ +G +D +L+ D+D++ +G+SKVL + Q+ S VK
Sbjct: 144 YIISPYESDAQLCFLQRIGYIDCILTEDSDLIPYGSSKVLYKFDSAFVQEFNRECLSEVK 203
Query: 197 SKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLG 239
K E + LDI ++L G DY ++G+G
Sbjct: 204 GKDFEENI----LDI------------SILSGCDYLASIQGVG 230
>YDR263c [L] KOG2518 5'-3' exonuclease
Length = 430
Score = 62.0 bits (149), Expect = 2e-09
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 30 KNGRFPRIAIDGYLWLFECGY---FDEPQNK--SKTLLNWLRKLKEMLHLQCFIVIIFDG 84
K + +AIDGY WL F+ NK +K L ++++L+ + L+ I+FDG
Sbjct: 20 KKYMYQTLAIDGYAWLHRASCACAFELVMNKPTNKYLQFFIKRLQLLKRLKIKPYIVFDG 79
Query: 85 TFKL-----DGKRRKKRK-----VATLWDSYWLMRSMNRFNH--DSVSYVDDYIIECCKL 132
+ +RRKKR LW + +M F D + II+ CKL
Sbjct: 80 DSLFVKNHTETRRRKKRLENEMIAKKLWSAGNRYNAMEYFQKSVDITPEMAKCIIDYCKL 139
Query: 133 FNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHG 183
+I I AP E + Q +L+ +G + ++S D+D+L FG ++ + G
Sbjct: 140 HSIPYIVAPFEADPQMVYLEKMGLIQGIISEDSDLLVFGCKTLITKLNDQG 190
>At3g28030 [L] KOG2520 5'-3' exonuclease
Length = 1482
Score = 60.8 bits (146), Expect = 5e-09
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 26/131 (19%)
Query: 115 NHDSVSYVDDYIIECCKL---FNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFG 171
N +SVS + EC +L F I I AP E EAQCAF++ VD ++++D+DV FG
Sbjct: 917 NAESVS--SEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFG 974
Query: 172 ASKVLKNYSKHGWQDLPNSSNSPVKSKQNERFV-TFVDLDIIKD--WDRDRFVLFNLLVG 228
A V KN + ++V T+ DI K+ RD+ + +L+G
Sbjct: 975 ARSVYKNIF------------------DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLG 1016
Query: 229 SDYNGGVKGLG 239
SDY G+ G+G
Sbjct: 1017 SDYTEGISGIG 1027
>YGR258c [L] KOG2520 5'-3' exonuclease
Length = 1031
Score = 58.2 bits (139), Expect = 3e-08
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 107 LMRSMNRFNHDSVSYVDDYIIECCKL---FNIQTINAPGEGEAQCAFLQLVGQVDFVLSN 163
L + DS D I E +L F I I AP E EAQCA L + VD ++++
Sbjct: 753 LFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITD 812
Query: 164 DADVLSFGASKVLKNYSKHGWQDLPNSSNSPVKSKQNERFVTFVDLDII---KDWDRDRF 220
D+DV FG +K+ KN + +V F D + I DR
Sbjct: 813 DSDVFLFGGTKIYKNMF------------------HEKNYVEFYDAESILKLLGLDRKNM 854
Query: 221 VLFNLLVGSDYNGGVKGLG 239
+ L+GSDY G+KG+G
Sbjct: 855 IELAQLLGSDYTNGLKGMG 873
>Hs4503601 [L] KOG2520 5'-3' exonuclease
Length = 1186
Score = 57.0 bits (136), Expect = 8e-08
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 128 ECCKLFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDL 187
E +LF I I AP E EAQCA L L Q +++D+D+ FGA V +N+
Sbjct: 774 ELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFN------ 827
Query: 188 PNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLG 239
K+K E + +VD DR++ + L+GSDY G+ +G
Sbjct: 828 --------KNKFVE-YYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVG 870
>SPBC29A10.05 [L] KOG2518 5'-3' exonuclease
Length = 571
Score = 56.6 bits (135), Expect = 1e-07
Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 49/269 (18%)
Query: 37 IAIDGYLWL----FECGYFDEPQNKSKTLLNWLRKLKEMLHLQCFIV---IIFDG----- 84
+ +DGY+WL F C + ++ L + + + L LQ + V I+FDG
Sbjct: 27 LGVDGYVWLHKAVFTCAHELAFNKETDKYLKYA--IHQALMLQYYGVKPLIVFDGGPLPC 84
Query: 85 TFKLDGKRRKKRKVA-----TLWDSYWLMRSMNRFNH--DSVSYVDDYIIECCKLFNIQT 137
+ KR+++R+ A LWD +++ +F+ D + +I + I++
Sbjct: 85 KASTEQKRKERRQEAFELGKKLWDEGKKSQAIMQFSRCVDVTPEMAWKLIIALREHGIES 144
Query: 138 INAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDLPNSSNSPVKS 197
I AP E +AQ +L+ +D +++ D+D+L FGA VL + G+ + + + +
Sbjct: 145 IVAPYEADAQLVYLEKENIIDGIITEDSDMLVFGAQTVL--FKMDGFGNCITIRRNDIAN 202
Query: 198 KQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLGGK------------RAAI 245
Q DL++ ++ R + + G DY GV G+G K RAAI
Sbjct: 203 AQ--------DLNLRLPIEKLRHMA--IFSGCDYTDGVAGMGLKTALRYLQKYPEPRAAI 252
Query: 246 ----LSKSREPDISKKLPAVLADAKFEEK 270
L KS + +S + LAD F +
Sbjct: 253 RAMRLDKSLKVPVSFEKEFALADLAFRHQ 281
>YOR033c [L] KOG2518 5'-3' exonuclease
Length = 702
Score = 55.1 bits (131), Expect = 3e-07
Identities = 60/231 (25%), Positives = 94/231 (39%), Gaps = 49/231 (21%)
Query: 37 IAIDGYLWLFE----CGY---FDEPQNKSKTLLNWLRKLKEMLHLQCFIVIIFDGTF--- 86
+AIDGY WL C Y +P +K L ++++ + + ++FDG
Sbjct: 27 LAIDGYAWLHRAACSCAYELAMGKPTDKY--LQFFIKRFSLLKTFKVEPYLVFDGDAIPV 84
Query: 87 --KLDGKRRKKRK-----VATLWDSYWLMRSMNRFNH--DSVSYVDDYIIECCKLFNIQT 137
+ KRR KRK LW +M+ F D + II CKL I+
Sbjct: 85 KKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIICYCKLNGIRY 144
Query: 138 INAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHG---------WQDLP 188
I AP E ++Q +L+ V ++S D+D+L FG +++ + +G + LP
Sbjct: 145 IVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITKLNDYGECLEICRDNFIKLP 204
Query: 189 NSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLG 239
P+ S NE +T V L G DY G+ +G
Sbjct: 205 --KKFPLGSLTNEEIITMV-----------------CLSGCDYTNGIPKVG 236
>7295491 [L] KOG2519 5'-3' exonuclease
Length = 726
Score = 55.1 bits (131), Expect = 3e-07
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 109 RSMNRFNHDSVSYVDDYIIECCKLF----NIQTINAPGEGEAQCAFLQLVGQVDFVLSND 164
+ +RFNH +++ C+ IQ + PGE EA CAFL G VD V+S D
Sbjct: 114 KGRSRFNH---------VLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQD 164
Query: 165 ADVLSFGASKVLKNYSKHGWQDLPNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFN 224
+D ++GA +V +N+S ++ + + ++ D+ + + ++
Sbjct: 165 SDCFAYGAVRVYRNFS-------VSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMA 217
Query: 225 LLVGSDY-NGGVKGLGGKRA-AILSKSREPDISKKL 258
LL G DY G+ G+G + +K +E +I ++
Sbjct: 218 LLCGCDYCPDGIGGIGKDGVLKLFNKYKETEILDRM 253
>ECU09g1620 [L] KOG2520 5'-3' exonuclease
Length = 562
Score = 54.7 bits (130), Expect = 4e-07
Identities = 39/128 (30%), Positives = 64/128 (49%), Gaps = 22/128 (17%)
Query: 119 VSYVDDYIIECCKLFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKN 178
+S V + ++FNI ++AP E + QC F+ VD V++ D DVL +G + V +N
Sbjct: 385 ISRVLGLVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITEDNDVLLYGGT-VYRN 443
Query: 179 YSKHGWQDLPNSSNSPVKSKQNERFVTFVDLDIIK---DWDRDRFVLFNLLVGSDYNGGV 235
+ + K ++ E++ LD I+ DR + + L+GSDY GV
Sbjct: 444 FFR--------------KDREIEKY----SLDRIERELQLDRKNLITLSYLLGSDYTDGV 485
Query: 236 KGLGGKRA 243
KG+G +A
Sbjct: 486 KGIGPVKA 493
>ECU03g1080 [L] KOG2519 5'-3' exonuclease
Length = 345
Score = 54.3 bits (129), Expect = 5e-07
Identities = 63/239 (26%), Positives = 101/239 (41%), Gaps = 31/239 (12%)
Query: 61 LLNWLRKLKEMLHLQCFIVIIFDGT---FKL-DGKRRKKRKVATLWDSYWLMRS------ 110
L+ + + M+ L V +FDG K+ + ++RK+R+ A D + S
Sbjct: 63 LVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKERRAAA--DREYREASEVGDKE 120
Query: 111 -MNRFNHDSVSYVDDYIIECCKLFNIQTI---NAPGEGEAQCAFLQLVGQVDFVLSNDAD 166
M ++ ++ EC +L + I AP E EA CA L V V + D D
Sbjct: 121 LMEMYDKRKTKVTGVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDMD 180
Query: 167 VLSFGASKVLKNYSKHGWQDLPNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLL 226
L+FG+ VL+N+ +G Q S PV + + + L D F+ +L
Sbjct: 181 ALTFGSPVVLRNF--NGTQ----SKRLPVMEHNLPQILEDLSL------DHSEFIDLCIL 228
Query: 227 VGSDYNGGVKGLGGKRAAILSKSREP---DISKKLPAVLADAKFEEKAKIQHKWEEFGE 282
+G DY +KG+G K+A L K + + V D ++ + KI E GE
Sbjct: 229 LGCDYCSTLKGIGPKKALGLIKKHRSIGNILKNEDLEVPGDWRYSDAQKIFGSLAEIGE 287
>CE22109 [L] KOG2519 5'-3' exonuclease
Length = 382
Score = 54.3 bits (129), Expect = 5e-07
Identities = 34/120 (28%), Positives = 60/120 (49%), Gaps = 12/120 (10%)
Query: 132 LFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDLPNSS 191
L I + AP E EAQCA L G+V ++ D D L+FG++ +L+++ P +
Sbjct: 147 LMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFL------APVAK 200
Query: 192 NSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLGGKRAAILSKSRE 251
P+K + + L + + F+ +L+G DY G ++G+G K+A L + +
Sbjct: 201 KIPIKEFNLSLALEEMKLSV------EEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHK 254
>7297419 [L] KOG2520 5'-3' exonuclease
Length = 1236
Score = 54.3 bits (129), Expect = 5e-07
Identities = 38/116 (32%), Positives = 55/116 (46%), Gaps = 15/116 (12%)
Query: 128 ECCKLFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDL 187
E +LF I I AP E EAQCAFL +++D+D+ FG V KN+
Sbjct: 865 ELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQ----- 919
Query: 188 PNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLGGKRA 243
N +++Q E+ TF + +R + + LVGSDY G+ G+G A
Sbjct: 920 -NKHVMEFRAEQIEQ--TF-------NCNRGKLIQLACLVGSDYTTGIHGIGAVTA 965
>CE28728 [L] KOG2518 5'-3' exonuclease
Length = 639
Score = 53.1 bits (126), Expect = 1e-06
Identities = 61/233 (26%), Positives = 105/233 (44%), Gaps = 29/233 (12%)
Query: 57 KSKTLLNWLRK-LKEMLHLQCFIVIIFDGTFKLDGK------RRKKRKVATLWDSYWLMR 109
++++ +N++ K +KE+L + C +V++FDG L K RR+ R+ L +
Sbjct: 51 ETQSYVNYVNKYVKELLGMGCHVVMVFDGR-PLPAKKGTNEERRELREKRKEHAEMLLAK 109
Query: 110 SMNRFNHD--------SVSYVDDYIIECCKLFNIQTINAPGEGEAQCAFLQLVGQVDFVL 161
+ R D S V++ I + N+ + AP E +AQ A+L VD V+
Sbjct: 110 GLEREARDTYRLATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVI 169
Query: 162 SNDADVLSFGASKVLKNYSKHGWQDLPNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFV 221
+ D+D++ FG + Y K WQ + K F + D +D +F
Sbjct: 170 TEDSDLIVFGCEMI---YFK--WQSATGECSVYEKCNLKNCFTGELGGD---KFDFVKFR 221
Query: 222 LFNLLVGSDY-NGGVKGLGGKRAA-ILSKSREPDIS---KKLPAVLADAKFEE 269
+L G DY G+ G+G AA S + D+ +K+P+ L + K +E
Sbjct: 222 RICILSGCDYLQAGLPGVGLSTAAKFFSMTSIKDLRTLLRKVPSYLKNPKLKE 274
>7302871 [L] KOG2519 5'-3' exonuclease
Length = 385
Score = 53.1 bits (126), Expect = 1e-06
Identities = 34/116 (29%), Positives = 57/116 (48%), Gaps = 12/116 (10%)
Query: 128 ECCKLFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDL 187
E L + ++AP E EAQCA L G+V + D D L+FG++K+L+ +
Sbjct: 143 ELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLR------YLTY 196
Query: 188 PNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLGGKRA 243
+ PVK ++ + + + + F+ +L+G DY +KG+G KRA
Sbjct: 197 SEARKMPVKEFSYDKLLEGLAI------NNREFIDLCILLGCDYCESIKGIGPKRA 246
>At1g01880 [L] KOG2519 5'-3' exonuclease
Length = 570
Score = 52.8 bits (125), Expect = 1e-06
Identities = 41/134 (30%), Positives = 63/134 (46%), Gaps = 16/134 (11%)
Query: 127 IECCKLFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQD 186
+E +L I + A GE EA CA L G VD ++ D+D FGA V+K D
Sbjct: 124 VELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIK--------D 175
Query: 187 LPNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDY-NGGVKGLG-GKRAA 244
+ +S P + + + L R + +LLVG+DY +GGV G+G K
Sbjct: 176 IKPNSREPFECYHMSHIESGLGL------KRKHLIAISLLVGNDYDSGGVLGIGVDKALR 229
Query: 245 ILSKSREPDISKKL 258
I+ + E + ++L
Sbjct: 230 IVREFSEDQVLERL 243
>CE01401 [L] KOG2520 5'-3' exonuclease
Length = 434
Score = 52.4 bits (124), Expect = 2e-06
Identities = 35/148 (23%), Positives = 69/148 (45%), Gaps = 14/148 (9%)
Query: 37 IAIDGYLWLFE----CGYFDEPQNKSKTLLNWLRKLKEMLHLQCFIVIIFDGTFKLDGKR 92
++IDG++WL+E C + Q + L+ + +++ +L L+ +++FD
Sbjct: 27 LSIDGHIWLYESLKGCEAHHQ-QTPNSYLVTFFTRIQRLLELKIIPIVVFDNINASSSAH 85
Query: 93 RKKRKVATLWDSYWLMRSMNRFNHDSVSYVDDYIIECCKLFN---IQTINAPGEGEAQCA 149
K + + ++ R F + + D++ + L I+ I APG+GEAQCA
Sbjct: 86 ESKDQ------NEFVPRKRRSFGDSPFTNLVDHVYKTNALLTELGIKVIIAPGDGEAQCA 139
Query: 150 FLQLVGQVDFVLSNDADVLSFGASKVLK 177
L+ +G ++ D D FG + +
Sbjct: 140 RLEDLGVTSGCITTDFDYFLFGGKNLYR 167
>At5g26675 [L] KOG2519 5'-3' exonuclease
Length = 465
Score = 52.0 bits (123), Expect = 2e-06
Identities = 36/106 (33%), Positives = 53/106 (49%), Gaps = 12/106 (11%)
Query: 138 INAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDLPNSSNSPVKS 197
I A E EAQCA L G+V V S D D L+FGA K L++ P+S PV
Sbjct: 166 IQATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMD------PSSRKIPVME 219
Query: 198 KQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLGGKRA 243
+ + + + L + D+F+ +L G DY ++G+GG+ A
Sbjct: 220 FEVAKILEELQLTM------DQFIDLCILSGCDYCDSIRGIGGQTA 259
>Hs4758356 [L] KOG2519 5'-3' exonuclease
Length = 380
Score = 51.6 bits (122), Expect = 3e-06
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 109 RSMNRFNHDSVSYVDDYIIEC---CKLFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDA 165
+ + +F V + EC L I ++AP E EA CA L G+V + D
Sbjct: 121 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 180
Query: 166 DVLSFGASKVLKNYSKHGWQDLPNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNL 225
D L+FG+ ++++ + + P++ R + + L ++++FV +
Sbjct: 181 DCLTFGSPVLMRHLT------ASEAKKLPIQEFHLSRILQELGL------NQEQFVDLCI 228
Query: 226 LVGSDYNGGVKGLGGKRAAIL 246
L+GSDY ++G+G KRA L
Sbjct: 229 LLGSDYCESIRGIGPKRAVDL 249
>SPAC3G6.06c [L] KOG2519 5'-3' exonuclease
Length = 380
Score = 51.2 bits (121), Expect = 4e-06
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 131 KLFNIQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKNYSKHGWQDLPNS 190
+L I +NAP E EAQCA L G+V S D D L F A +L++ +
Sbjct: 147 ELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLT------FSEQ 200
Query: 191 SNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLGGKRAAIL 246
P+ E+ + +D+ + ++FV +L+G DY ++G+G RA L
Sbjct: 201 RKEPISEYNIEKALNGLDMSV------EQFVDLCILLGCDYCEPIRGVGPARAVEL 250
>CE11308 [L] KOG2520 5'-3' exonuclease
Length = 829
Score = 50.8 bits (120), Expect = 6e-06
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 135 IQTINAPGEGEAQCAFLQLVGQVDFVLSNDADVLSFGASKVLKN-------YSKHGWQDL 187
I I +PGE EAQC L+ +G VD V+S+D+DV +FGA V ++ ++G Q
Sbjct: 490 IPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMFSKNRRVQRYGEQTT 549
Query: 188 PNSSNSPVKSKQNERFVTFVDLDIIKDWDRDRFVLFNLLVGSDYNGGVKGLG 239
N N + Q E +++ LL G DY G+ +G
Sbjct: 550 ANRDNCKLFCLQREDYISIA-----------------LLSGGDYCAGLVKVG 584
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,938,708
Number of Sequences: 60738
Number of extensions: 1591766
Number of successful extensions: 3671
Number of sequences better than 1.0e-05: 21
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3639
Number of HSP's gapped (non-prelim): 24
length of query: 584
length of database: 30,389,216
effective HSP length: 112
effective length of query: 472
effective length of database: 23,586,560
effective search space: 11132856320
effective search space used: 11132856320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)