ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI0364    suspect: LH   J     KOG4599  Translation, ribosomal structure and biogenesis                Putative mitochondrial/chloroplast ribosomal protein L45

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI0364  125585  126718 378  
         (378 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER038c [J] KOG4599 Putative mitochondrial/chloroplast ribosomal...    99   8e-21

>YER038c [J] KOG4599 Putative mitochondrial/chloroplast ribosomal protein
           L45
          Length = 464

 Score = 99.4 bits (246), Expect = 8e-21
 Identities = 108/435 (24%), Positives = 195/435 (44%), Gaps = 92/435 (21%)

Query: 25  RDEELDDNGKNSDHFSDPGESFLLSSDDAMLPTDRVLNNIMSSNAHIG------------ 72
           RD++ DD   + +  SDP E+  L+SD+     +    N+  + A  G            
Sbjct: 37  RDDD-DDEKVHPNFISDP-ENDSLNSDEEFSSLENSDLNLSGAKAESGDDFDPILKRTII 94

Query: 73  TKRRRSTDREKLWEEWHKSLKSSMEI-------------NNMTMELKSFTDKRPDVQASQ 119
           +KR+  ++ E   EE  K+ +  +               + +T  +    D + ++  S 
Sbjct: 95  SKRKAPSNNED--EEIVKTPRKLVNYVPLKIFNLGDSFDDTITTTVAKLQDLKKEILDSP 152

Query: 120 RKNSP---------HYDRQKQIAYSIKRNIPTSLLTELAAD-VSDSTVDWYFLRED---- 165
           R N             + QK I +S   +IP   L  +  + +SD   DW+F+ ++    
Sbjct: 153 RSNKSIVITSNTVAKSELQKSIKFS--GSIPEIYLDVVTKETISDKYKDWHFISKNCHYE 210

Query: 166 --PDFSVVPSRYSTFLGKRLS---IP---------LDDLYKKFGAD------LRANIEYT 205
              D  +  + YS   G   S   +P         + +L   FG +      L+ N E  
Sbjct: 211 QLMDLEMKDTAYSFLFGSSRSQGKVPEFVHLKCPSITNLLVLFGVNQEKCNSLKINYEKK 270

Query: 206 -NCPYGKL---IPVETMCGLI----ESNNSDSVQAF--KHFIKFILDRKISGNLKTKW-- 253
            N  Y  L    PV  M   +      +++D V+ F  K FI  ILDRK+   +++    
Sbjct: 271 ENSRYDNLCTIFPVNKMLKFLMYFYSDDDNDDVREFFLKAFICLILDRKVFNAMESDHRL 330

Query: 254 ---VINMWNRFTCDKLSVYFEVTPRNFYLMHYRLTRLIP-IESEIVSKLFPN-------- 301
              V+ ++N      ++ YFE+  +N + +HYRL ++ P ++S ++ + F          
Sbjct: 331 CFKVLELFNE--AHFINSYFEIVDKNDFFLHYRLLQIFPHLQSALLRRRFSEKQGRTETI 388

Query: 302 DNDVITEFENLLDSQEWTSLLYFIILVLGTSALPFGPSPRMT-YIKDCILDLNSQNSSKI 360
             ++I EF    D + + +LLYFI+ + G+  +PFGP  ++T Y KDCILD++++ ++ +
Sbjct: 389 QQNIIKEFNEFFDCKNYKNLLYFILTMYGSKFIPFGPKCQVTEYFKDCILDISNETTNDV 448

Query: 361 QLSIIKAYLTVCSKI 375
           ++SI+K  L + SKI
Sbjct: 449 EISILKGILNLFSKI 463


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,372,120
Number of Sequences: 60738
Number of extensions: 1022728
Number of successful extensions: 3014
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3012
Number of HSP's gapped (non-prelim): 1
length of query: 378
length of database: 30,389,216
effective HSP length: 108
effective length of query: 270
effective length of database: 23,829,512
effective search space: 6433968240
effective search space used: 6433968240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)