ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI0404    good          T     KOG3348  Signal transduction mechanisms                                 BolA (bacterial stress-induced morphogen)-related protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI0404  136238  136492 85   
         (85 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL220w [T] KOG3348 BolA (bacterial stress-induced morphogen)-re...    87   3e-18
7303423 [T] KOG3348 BolA (bacterial stress-induced morphogen)-re...    60   5e-10
At5g09830 [T] KOG3348 BolA (bacterial stress-induced morphogen)-...    47   5e-06

>YGL220w [T] KOG3348 BolA (bacterial stress-induced morphogen)-related
           protein
          Length = 120

 Score = 87.4 bits (215), Expect = 3e-18
 Identities = 38/82 (46%), Positives = 52/82 (63%)

Query: 2   LTQDDLKAKLEKEIPNFYHALITDTSNGCGQXXXXXXXXXXXXGKNKLSRCRIVNKALAE 61
           +T+  L+ ++E  IP  YH ++TD S GCGQ            GK+KL R R VNKA+ E
Sbjct: 38  VTEQGLRERIESAIPQVYHIIVTDLSYGCGQSFDIVVVSDFFQGKSKLMRSRAVNKAVKE 97

Query: 62  EVAQIHAFGCKCYTTNEWNEIL 83
           E+ +IHAF CKCYT  EW++I+
Sbjct: 98  ELQEIHAFSCKCYTEEEWSKIV 119


>7303423 [T] KOG3348 BolA (bacterial stress-induced morphogen)-related
          protein
          Length = 86

 Score = 60.1 bits (144), Expect = 5e-10
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 7  LKAKLEKEIPNFYHALITDTSNGCGQXXXXXXXXXXXXGKNKLSRCRIVNKALAEEVAQI 66
          L+ KL++E+   Y + +TD S+GCG             GK  L + R+VN  LAEE+ +I
Sbjct: 9  LEEKLKRELQTEYVS-VTDESDGCGGKFSAVIVSPAFSGKTLLQKHRLVNSTLAEELKEI 67

Query: 67 HAFGCKCYTTNEWNEI 82
          HAF  K YT  EW ++
Sbjct: 68 HAFSQKSYTPEEWEKV 83


>At5g09830 [T] KOG3348 BolA (bacterial stress-induced morphogen)-related
          protein
          Length = 93

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 1  MLTQDDLKAKLEKEIPNFYHALITDTSNGCGQXXXXXXXXXXXXGKNKLSRCRIVNKALA 60
          M+T++ ++A L  ++    H  + D S GCG             GK  L R R+VN AL 
Sbjct: 1  MVTKEQVEASLTSKLKPI-HLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALE 59

Query: 61 EEVAQIHAFGC-KCYTTNEW 79
          EE+ +IHA    K  T  +W
Sbjct: 60 EEMKEIHALSIKKAQTPQQW 79


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,497,802
Number of Sequences: 60738
Number of extensions: 112773
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 3
length of query: 85
length of database: 30,389,216
effective HSP length: 61
effective length of query: 24
effective length of database: 26,684,198
effective search space: 640420752
effective search space used: 640420752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)