ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI0437    suspect: LH   U     KOG3202  Intracellular trafficking, secretion, and vesicular transport  SNARE protein TLG1/Syntaxin 6

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI0437  147876  148913 346  
         (346 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL212w [U] KOG3202 SNARE protein TLG1/Syntaxin 6                      89   7e-18

>YGL212w [U] KOG3202 SNARE protein TLG1/Syntaxin 6
          Length = 316

 Score = 89.4 bits (220), Expect = 7e-18
 Identities = 82/341 (24%), Positives = 148/341 (43%), Gaps = 43/341 (12%)

Query: 6   RCEVSINDVTIVEKRYALYHIIVNVIRSKEDYSEYKSERRFKDFLQLKKQLEYECSGELP 65
           +  + ++DV I  K Y LY +      S  +   YK   R+ +F +LK +LE +    +P
Sbjct: 12  KLRIKVDDVKINPK-YVLYGV------STPNKRLYK---RYSEFWKLKTRLERDVGSTIP 61

Query: 66  YELPGRRLL----WSRTANSCDPDVVEERRVKLRQFLSDLLNDSFETKWRNSSLVAQFLN 121
           Y+ P +  +    W R  +  DP++++ERR+ L +FL++L ND F+++WR++ +   FL 
Sbjct: 62  YDFPEKPGVLDRRWQRRYD--DPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQ 119

Query: 122 LPEGWYIKSSTKSGNSFTKETIKDGTNPDDALDPSKWLVVLRESKSEFYNGAHDTRTVMK 181
           L +    +  ++       E   D    D  LD  K      ES     +G    R  ++
Sbjct: 120 LSKPNVSQEKSQQHLETADEVGWDEMIRDIKLDLDK------ES-----DGTPSVRGALR 168

Query: 182 QRLVLDNLEQGLKVIEKEELVSKMECERRKQLLATFKNDLNETIQPASWNKHNNDREELL 241
            R  L  L + L+   +++ +   E  RR  LL +   + ++ I  A+  +   DR  LL
Sbjct: 169 ARTKLHKLRERLEQDVQKKSLPSTEVTRRAALLRSLLKECDD-IGTANIAQ---DRGRLL 224

Query: 242 YKDYQNKFEEPKIGKGRKLGETSETSDLNNQQILQLHKDTINDQDEQLHKLHEIVQQQKN 301
                +               T+E     N  + Q     + DQ+++L  LH I+Q Q+ 
Sbjct: 225 GVATSDN------------SSTTEVQGRTNNDLQQGQMQMVRDQEQELVALHRIIQAQRG 272

Query: 302 ISXXXXXXXXXXXXXXDMFQDETQASANKLRTANRNAVKFN 342
           ++                 +D+   +  +L+ AN+ A  FN
Sbjct: 273 LALEMNEELQTQNELLTALEDDVDNTGRRLQIANKKARHFN 313


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,417,841
Number of Sequences: 60738
Number of extensions: 879795
Number of successful extensions: 2240
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2238
Number of HSP's gapped (non-prelim): 1
length of query: 346
length of database: 30,389,216
effective HSP length: 107
effective length of query: 239
effective length of database: 23,890,250
effective search space: 5709769750
effective search space used: 5709769750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)