ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0499 good L KOG2095 Replication, recombination and repair DNA polymerase iota/DNA damage inducible protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0499 169823 167889 -645
(645 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR419w [L] KOG2095 DNA polymerase iota/DNA damage inducible pro... 629 e-180
SPBC16A3.11_1 [L] KOG2095 DNA polymerase iota/DNA damage inducib... 219 8e-57
Hs5729982 [L] KOG2095 DNA polymerase iota/DNA damage inducible p... 86 2e-16
Hs6005848 [L] KOG2095 DNA polymerase iota/DNA damage inducible p... 71 4e-12
CE28442 [L] KOG2095 DNA polymerase iota/DNA damage inducible pro... 70 1e-11
7296509 [L] KOG2095 DNA polymerase iota/DNA damage inducible pro... 70 1e-11
At5g44740 [L] KOG2095 DNA polymerase iota/DNA damage inducible p... 68 5e-11
>YDR419w [L] KOG2095 DNA polymerase iota/DNA damage inducible protein
Length = 632
Score = 629 bits (1622), Expect = e-180
Identities = 319/659 (48%), Positives = 436/659 (65%), Gaps = 43/659 (6%)
Query: 1 MSKYRWRDLIDLNDKEKSFLSPLACIAHIDVNAFFAQVEQVRCGFSRDDPVVAVQWTSIL 60
MSK+ W++LI L K++ S LACIAHID+NAFFAQVEQ+RCG S++DPVV VQW SI+
Sbjct: 1 MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSII 60
Query: 61 AVSYAARKYNVSRMESILDAIKKCDKIIPIHTAVFRKGEDYWQYHDGCGSWVEDESKKLS 120
AVSYAARKY +SRM++I +A+KKC +IPIHTAVF+KGED+WQYHDGCGSWV+D +K++S
Sbjct: 61 AVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQIS 120
Query: 121 PTNYKVALEPYRRESRKLIKLFQDEYDLVEKASVDEAFIELGRKLFYELLMDDSY----- 175
++KV+LEPYRRESRK +K+F+ DLVE+AS+DE F++LGR F L+ D+ Y
Sbjct: 121 VEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGD 180
Query: 176 ----TDFADIRGIFQDGRYDLNDHLPSLPTKL-SIQFSGEVFNSQNRPLFEDWDDVLMCL 230
++IR F G YD+N HLP +P K+ S++F G+VFN + R L DWDDV++ L
Sbjct: 181 LKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL 240
Query: 231 ASNSTNTIRNQIDDMLGYTTSCGISMTKNLSKLASNYKKPNAQTIVKNNCIDDFLDCGKF 290
S IR+ I D+LGYTTSCG+S TKN+ KLASNYKKP+AQTIVKN+C+ DFLDCGKF
Sbjct: 241 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKF 300
Query: 291 EINSFWTLGGIRGKELIDLMELPKEHSIKFIRDSWPVSSDDIRKFMLKKIICRDIQRSRE 350
EI SFWTLGG+ GKELID+++LP E+SIK IR++WP ++ +++F+ K+ D RS
Sbjct: 301 EITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTS 360
Query: 351 YNINEADVAKISAKIYQLVRGQFRLPVEPRPLPKSMMSKKNLRNDDCASVIDCIEWLEIF 410
NI+ A ++ K+++L RG++ LP+ RP+ KSMMS KNLR C S++DCI WLE+F
Sbjct: 361 -NIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVF 419
Query: 411 CSELNYRVHDLEQEYEKVIMPRTIVIMIKGKAGMKYTQXXXXXXXXXXXXXXELFINATK 470
C+EL R+ DLEQEY K+++PRT+ I +K K+ Y + EL K
Sbjct: 420 CAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIK 479
Query: 471 LINEIDKQHGKLAGVYPLRELSLTLSNFDIIDKGKTVLDMFGNRAISKSSSTDNNVVKIE 530
+ ++D + GK YPL +LS+T++NFDIID KTV+DMFGN+ + SS
Sbjct: 480 FVTDLDIK-GKNKSYYPLTKLSMTITNFDIIDLQKTVVDMFGNQVHTFKSSAGKE----- 533
Query: 531 GEDIHSDSKGGPYDASVSETLEGEPPSASSPPTMAENLTCKQCGETLQDKKLFQEHVDYH 590
+ E ++S L C + T D+K QEH DYH
Sbjct: 534 ---------------------DEEKTTSSKADEKTPKLECCKYQVTFTDQKALQEHADYH 572
Query: 591 LSVQLSEQINGVSENSTMLTHAERILLFGKKAKKNAASVQKPKKK----DGGIMKFFKK 645
L+++LSE +NG E+S L+ E+ LLF +K + N+ P+KK I+ FF +
Sbjct: 573 LALKLSEGLNGAEESSKNLSFGEKRLLFSRK-RPNSQHTATPQKKQVTSSKNILSFFTR 630
>SPBC16A3.11_1 [L] KOG2095 DNA polymerase iota/DNA damage inducible protein
Length = 634
Score = 219 bits (559), Expect = 8e-57
Identities = 178/630 (28%), Positives = 277/630 (43%), Gaps = 101/630 (16%)
Query: 2 SKYRWRDLIDLNDKEKSFLSPLACIAHIDVNAFFAQVEQVRCGFSRDDPVVAVQWTSILA 61
SK+ W+DL DK + SPL +AHID +AF+AQVE VR G P+ QW ++A
Sbjct: 6 SKFSWKDL-QYCDKAGTQNSPLRVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQWQGLIA 64
Query: 62 VSYAARKYNVSRMESILDAIKKCDKIIPIHTAVFRKGEDYWQYHDGCGSWVEDESKKLSP 121
V+YAAR N+SR E++ +A KKC ++ H ++ GE +YH+ +P
Sbjct: 65 VNYAARAANISRHETVTEAKKKCPELCTAHVKTWKAGESEAKYHE-----------NPNP 113
Query: 122 TNYKVALEPYRRESRKLIKLFQDEYDLVEKASVDEAFIELGRKLFYELLMDDSYTDFADI 181
YK L+PYR ES K++ + + +V+KAS+DE FIEL + +L + Y
Sbjct: 114 NYYKTCLDPYRHESVKILNIIKKHAPVVKKASIDECFIELTSDVKRIVLEEYPYLKIPS- 172
Query: 182 RGIFQDGRYDLNDHLPSLPTKL-----SIQFSGEVFNSQNRPLFEDWDDVLMCLASNSTN 236
D N LP P L + EV + DWDDV + A+
Sbjct: 173 --------EDSNVALPQAPVLLWPAEFGMVIEEEVVDRTKEDYERDWDDVFLFYAAKIVK 224
Query: 237 TIRNQIDDMLGYTTSCGISMTKNLSKLASNYKKPNAQTIVKNNCIDDFLDCGKFEINSFW 296
IR+ I L YT S G+S LSKL S+ KPN QTI+ N I D+L +I
Sbjct: 225 EIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNAIQDYL--VSLKITDIR 282
Query: 297 TLGGIRGKELIDLMELPKEHSIKFIRDSWPVSSDDIRKFMLKKIICRDIQRSREYNINEA 356
LGG G+E+I+L+ I+D W +S D F++ K+ +
Sbjct: 283 MLGGKFGEEIINLL------GTDSIKDVWNMSMD----FLIDKLGQTN------------ 320
Query: 357 DVAKISAKIYQLVRGQFRLPVEPRPLPKSMMSKKNLRNDDCASVIDCIEWLEIFCSELNY 416
++ L G + + KSM+S KN S D I W ++F S+L
Sbjct: 321 -----GPLVWNLCHGIDNTEITTQVQIKSMLSAKNFSQQKVKSEEDAINWFQVFASDLRS 375
Query: 417 RVHDLEQEYEKVIMPRTIVIMIKGKAGMKYTQXXXXXXXXXXXXXXELFINAT-KLINEI 475
R +L E + P+TI + + + K + + AT KL+ ++
Sbjct: 376 RFLEL----EGMRRPKTICLTVVSRFLRK---SRSSQIPMNVDISTQFIVEATSKLLRQL 428
Query: 476 DKQHGKLAGVYPLRELSLTLSNFDIIDKGKTVLDMF-------------------GNRAI 516
++ VYP+ LS++ N +D+ ++ F G +
Sbjct: 429 QQEF----DVYPISNLSISFQNIIEVDRNSRGIEGFLKKSNDEIYMSTSVSPSIEGRAKL 484
Query: 517 SKSSSTDNNVVKIEGE-DIHSD-----SKGGPYDASVSETLEGEPPSASSPPTMAENLTC 570
+ +NN ++ E DI S KG + +T +P S+ E TC
Sbjct: 485 LNENMRENNSFELSSEKDIKSPKRLKRGKGKGIFDMLQQTAVSKPTENSAD----ETYTC 540
Query: 571 KQCGE--TLQDKKLFQEHVDYHLSVQLSEQ 598
++C + TL ++ EH DYH+++ +S +
Sbjct: 541 EECEQKITLSER---NEHEDYHIALSISRK 567
>Hs5729982 [L] KOG2095 DNA polymerase iota/DNA damage inducible protein
Length = 713
Score = 85.5 bits (210), Expect = 2e-16
Identities = 99/432 (22%), Positives = 173/432 (39%), Gaps = 83/432 (19%)
Query: 26 IAHIDVNAFFAQVEQVRCGFSRDDPVVAVQWTS-----ILAVSYAARKYNVSRMESILDA 80
+A +D++ FF QVEQ + R+ P VQ+ S I+AVSY AR + V+R DA
Sbjct: 9 VALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDA 68
Query: 81 IKKCDKIIPIHTAVFRKGEDYWQYHDGCGSWVEDESKKLSPTNYKVALEPYRRESRKLIK 140
K C ++ ++ + K L YR S ++++
Sbjct: 69 KKLCPDLL---------------------------LAQVRESRGKANLTKYREASVEVME 101
Query: 141 LFQDEYDLVEKASVDEAFIELGRKLFYELLMDDSYTDFAD-IRGIFQDGRYDLNDHLPSL 199
+ + ++E+AS+DEA+++L + L AD + + +G LP
Sbjct: 102 I-MSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEG-------LPQG 153
Query: 200 PTKLSIQFSGEVFNSQNRPLFEDWD----------DVLMCLASNSTNTIRNQIDDMLGYT 249
PT E Q LF+ D D+ + + + +R I+ G+
Sbjct: 154 PTTAEETVQKEGMRKQG--LFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQ 211
Query: 250 TSCGISMTKNLSKLASNYKKPNAQTIVKNNCIDDFLDCGKFEINSFWTLGGIRGKELIDL 309
S GIS K L+KLA KPN QT+V + + + I +LGG G +I++
Sbjct: 212 CSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLF--SQMPIRKIRSLGGKLGASVIEI 269
Query: 310 MELPKEHSIKFIRDSWPVSSDDIRKFMLKKIICRDIQRSREYNINEADVAKISAKIYQLV 369
+ I+++ ++ + E + K + +Y +
Sbjct: 270 L------GIEYM---------------------GELTQFTESQLQSHFGEKNGSWLYAMC 302
Query: 370 RGQFRLPVEPRPLPKSMMSKKNLRNDDCASVIDCIE-WLEIFCSELNYRVHDLEQEYEKV 428
RG PV+PR LPK++ KN + + ++ WL EL R+ + ++V
Sbjct: 303 RGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRV 362
Query: 429 IMPRTIVIMIKG 440
+ I ++G
Sbjct: 363 ATQLVVSIRVQG 374
>Hs6005848 [L] KOG2095 DNA polymerase iota/DNA damage inducible protein
Length = 715
Score = 71.2 bits (173), Expect = 4e-12
Identities = 62/251 (24%), Positives = 107/251 (41%), Gaps = 59/251 (23%)
Query: 26 IAHIDVNAFFAQVEQVRCGFSRDDPVVAVQWTSILAVSYAARKYNVSRMESILDAIKKCD 85
I H+D++ F+AQVE + +D P+ Q ++ +Y ARK V ++ ++ DA +KC
Sbjct: 30 IVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCP 89
Query: 86 KIIPIHTAVFRKGEDYWQYHDGCGSWVEDESKKLSPTNYKVALEPYRRESRKLIKLFQDE 145
+++ ++ GED L YR S K+ +L ++
Sbjct: 90 QLVLVN------GED---------------------------LTRYREMSYKVTELLEEF 116
Query: 146 YDLVEKASVDEAFIELGRKLFYELLMDDSYTDFADIRGIFQDGRYDLNDHLPSLPTKLSI 205
+VE+ DE F++L + L S D L + +
Sbjct: 117 SPVVERLGFDENFVDLTEMVEKRLQQLQS-------------------DELSA------V 151
Query: 206 QFSGEVFNSQNRPLFEDWDDVLMCLASNSTNTIRNQIDDMLGYTTSCGISMTKNLSKLAS 265
SG V+N+Q+ L D + + + S +R + + LG T G++ K L+KL S
Sbjct: 152 TVSGHVYNNQSINLL-DVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVS 210
Query: 266 NYKKPNAQTIV 276
KPN QT++
Sbjct: 211 GVFKPNQQTVL 221
>CE28442 [L] KOG2095 DNA polymerase iota/DNA damage inducible protein
Length = 603
Score = 70.1 bits (170), Expect = 1e-11
Identities = 97/417 (23%), Positives = 166/417 (39%), Gaps = 95/417 (22%)
Query: 26 IAHIDVNAFFAQVEQVRCGFSRDDPVVAVQWT------SILAVSYAARKYNVSRMESILD 79
I+ ID++ F+AQVEQ PV+ VQ + ILAVSY AR + V R ++ +
Sbjct: 5 ISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTVAE 64
Query: 80 AIKKCDKIIPIHTAVFRKGEDYWQYHDGCGSWVEDESKKLSPTNYKVALEPYRRESRKLI 139
A KC +I H + G +V+ K ++ YR S ++
Sbjct: 65 AKLKCPQISICHVPI--------------GEYVD-----------KADIQKYRDASAEVF 99
Query: 140 KLFQ--DEYDLVEKASVDEAFIELG---RKLFYELLMDDSYTDFADIRGIFQDGRYDLND 194
++ D ++EKASVDEAF++L + EL ++ +F L
Sbjct: 100 RVLNNYDSQIIIEKASVDEAFLDLSAYTNQKLQELRENEGLEEF-------------LQA 146
Query: 195 HLPSLPTKLSIQFSGEVFNSQNRPLFED------------WDDVLMCLASNSTNTIRNQI 242
+ LPT + +GE +N L ED +++L+ +A+ + IR QI
Sbjct: 147 AITYLPT--THLATGEDV-KENEHLREDVLLEYIENARNCTENLLLLIAAVTVEQIRQQI 203
Query: 243 DDMLGYTTSCGISMTKNLSKLASNYKKPNAQTIVKNNCIDDFLDCGKFEINSFWTLGGIR 302
+ + S G+ K ++KL KP QT++ + + L I GG
Sbjct: 204 HEETQFFCSAGVGNNKMMAKLVCARHKPRQQTLIPWFYVREILRL--TPIGDVRGFGGKM 261
Query: 303 GKELIDLMELPKEHSIKFIRDSWPVSSDDIRKFMLKKIICRDIQRSREYNINEADVAKIS 362
G + +++ + ++ +++ DI + E N+ + +
Sbjct: 262 GNRIQEMLNIT----------------------LMGELLEVDISQLIETFPNQHEYLR-- 297
Query: 363 AKIYQLVRGQFRLPVEPRPLPKSMMSKKNLRND-DCASVIDCIEWLEIFCSELNYRV 418
+ G PV PR S+ KN SV++ +WL+ EL R+
Sbjct: 298 ----SVAEGHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRL 350
>7296509 [L] KOG2095 DNA polymerase iota/DNA damage inducible protein
Length = 885
Score = 69.7 bits (169), Expect = 1e-11
Identities = 114/533 (21%), Positives = 209/533 (38%), Gaps = 96/533 (18%)
Query: 29 IDVNAFFAQVEQVRCGFSRDDPVVAVQWT-----SILAVSYAARKYNVSRMESILDAIKK 83
+D++ FF QVE+ + R+ P+ VQ+ I+AV+YAAR V+R +A
Sbjct: 21 VDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGDEAKDL 80
Query: 84 CDKIIPIHTAVFRKGEDYWQYHDGCGSWVEDESKKLSPTNYKVALEPYRRESRKLIKLFQ 143
C +I+ R+ D +Y D +++ + Q
Sbjct: 81 CPEIVLCQVPNIREKADTSKYRDA---------------------------GKEVANVLQ 113
Query: 144 DEYDLVEKASVDEAFIELGRKLFYELLMDDSYTDFA----DIRGIFQDGRYDLNDHLPSL 199
L+E+ASVDEA++++ + + + S FA ++ F G + D++
Sbjct: 114 RFTQLLERASVDEAYLDITETVNHRMQQMQSGA-FALQPQELVNTFAVGYPSIGDYV--- 169
Query: 200 PTKLSIQFSGEVFNSQNRPLFEDWD--------DVLMCLASNSTNTIRNQIDDMLGYTTS 251
K++ +F+ + + + D + D+ + + ++ +R + GY S
Sbjct: 170 -NKITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECS 228
Query: 252 CGISMTKNLSKLASNYKKPNAQTIV---KNNCIDDFLDCGKFEINSFWTLGGIRGKELID 308
GI+ K L+KLA+ KPN QTI+ + + D L GK + LGG G+ + +
Sbjct: 229 AGIAHNKILAKLAAGMNKPNKQTILPLTETASLFDSLPVGKIK-----GLGGKFGEVVCE 283
Query: 309 LMELPKEHSIKFIRDSWPVSSDDIRKFMLKKIICRDIQRSREYNINEADVAKISAKIYQL 368
+ + KFM + + ++ R+++ K ++ +
Sbjct: 284 TLGI---------------------KFMGQVVKFSEVDLQRKFD------EKNGTWLFNI 316
Query: 369 VRGQFRLPVEPRPLPKSM-MSKKNLRNDDCASVIDCIEWLEIFCSELNYRVHD--LEQEY 425
RG V PR KS+ KK ++ + WL SE+N R+ +E
Sbjct: 317 SRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNR 376
Query: 426 EKVIMPRTIVIMIKGK--AGMKYTQXXXXXXXXXXXXXXELFINATKLINEIDKQHGKLA 483
M V I G+ A + T +L TK + + A
Sbjct: 377 RAKHMVVQYVQDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFL---RPGSESA 433
Query: 484 GVYPLRELSLTLSNFDIIDKGKTVL-DMFGNRAISK---SSSTDNNVVKIEGE 532
++ L +++ F+ + G+ L +MF N+A K S + K+E E
Sbjct: 434 LNNAIKFLGISVGKFETVSSGQNKLQEMFANQAAKKRRVSGDEPGQLPKVEME 486
>At5g44740 [L] KOG2095 DNA polymerase iota/DNA damage inducible protein
Length = 689
Score = 67.8 bits (164), Expect = 5e-11
Identities = 103/411 (25%), Positives = 155/411 (37%), Gaps = 72/411 (17%)
Query: 26 IAHIDVNAFFAQVEQVRCGFSRDDPVVAVQWTS-----ILAVSYAARKYNVSRMESILDA 80
IAH+D++ F+ QVEQ + R P VQ+ ++AVSY ARK V R +A
Sbjct: 14 IAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRGDEA 73
Query: 81 IKKCDKIIPIHTAVFRKGEDYWQYH------DGCGSWVEDESKKLSPTNYKVALEPYRRE 134
C +I + V R D Y DG GS+ Y V + +
Sbjct: 74 KAACPQIQLVQVPVARGKADLNLYRSAGSEVDGSGSYY-----------YTVCVVSILAK 122
Query: 135 SRKLIKLFQDEYDLVEKASVDEAFIELGRKLFYELLMDDSYTDFADIRGIFQDGRYDLND 194
S K E+AS+DE +++L E ++ D+ + ++ L
Sbjct: 123 SGKC-----------ERASIDEVYLDLTDAA--ESMLADAPPESLELID-----EEVLKS 164
Query: 195 HLPSLPTKLSIQFSGEVFNSQNRPLFEDWDDVLMCLASNSTNTIRNQIDDMLGYTTSCGI 254
H+ + + F V N R + D +L C +R Q+ +T S GI
Sbjct: 165 HILGMNREDGDDFKESVRNWICREDADRRDKLLSC-GIIIVAELRKQVLKETEFTCSAGI 223
Query: 255 SMTKNLSKLASNYKKPNAQTIVKNNCIDDFLDCGKFEINSFWTLGGIRGKELIDLMELPK 314
+ K L+KLAS KP QT+V + + L I LGG G L
Sbjct: 224 AHNKMLAKLASGMNKPAQQTVVPYAAVQELL--SSLPIKKMKQLGGKLGTSL-------- 273
Query: 315 EHSIKFIRDSWPVSSDDIRKFMLKKIICRDIQRSREYNINEADVAKISAKIYQLVRGQFR 374
D + D+ +F K+ Y +N ++ + RG
Sbjct: 274 ------QTDLGVDTVGDLLQFSETKL-------QEHYGVN------TGTWLWNIARGISG 314
Query: 375 LPVEPRPLPKSMMSKKNLRNDDCASVIDCIE-WLEIFCSELNYRV-HDLEQ 423
V+ R LPKS S K + ++ WL EL+ R+ DLEQ
Sbjct: 315 EEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQ 365
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,661,253
Number of Sequences: 60738
Number of extensions: 1682989
Number of successful extensions: 5897
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5869
Number of HSP's gapped (non-prelim): 14
length of query: 645
length of database: 30,389,216
effective HSP length: 113
effective length of query: 532
effective length of database: 23,525,822
effective search space: 12515737304
effective search space used: 12515737304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)