ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI0574    suspect: LH   R     KOG3362  General function prediction only                               Predicted BBOX Zn-finger protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI0574  192493  193239 249  
         (249 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YML041c [R] KOG3362 Predicted BBOX Zn-finger protein                  200   2e-51

>YML041c [R] KOG3362 Predicted BBOX Zn-finger protein
          Length = 280

 Score =  200 bits (508), Expect = 2e-51
 Identities = 113/275 (41%), Positives = 171/275 (62%), Gaps = 29/275 (10%)

Query: 4   VEEINVRTYNPNIYFSSLN---QTHQSARVSKQS--QTSARNKRVNYSLADLEAKIYNQP 58
           VEEI+ +TYNP+IYF+SL+   + + S +++KQ    TS   KR+NYSLADLEA++Y   
Sbjct: 5   VEEIDKKTYNPDIYFTSLDPQARRYTSKKINKQGTISTSRPVKRINYSLADLEARLYTSR 64

Query: 59  KGSDKDDI---------NQLTGSDKHALPDLLRSNKRFMELDTENYQDLREVTTLLSNIT 109
              D + I         N  +  +++   ++L+S++RFMEL+TEN+ DL  V TLLS++T
Sbjct: 65  SEGDGNSISRQDDRNSKNSHSFEERYTQQEILQSDRRFMELNTENFSDLPNVPTLLSDLT 124

Query: 110 GLNKDKID-------QTSTGILSEXXXXXXXXXXX------MAKFDLPKSMNLLYXXXXX 156
           G+ +D+I+       QTS G+ +                  + K +  + + L Y     
Sbjct: 125 GVPRDRIESTTKPISQTSDGLSALMGGSSFVKEHSKYGHGWVLKPETLREIQLSYKSTKL 184

Query: 157 XXXXXXXXNRISALRKVLSSRRSLHSYLET--LDQVNHTLIYSNVQNKKFFRVLPMIVTC 214
                   NRI AL+KVLSS+R+LHS+L++  L+ ++  +IY NV NK++F+VLP+I TC
Sbjct: 185 PKPKRKNTNRIVALKKVLSSKRNLHSFLDSALLNLMDKNVIYHNVYNKRYFKVLPLITTC 244

Query: 215 SMCGGYSSISNCVVCNDKICSLRCYELHSETRCNN 249
           S+CGGY SIS+CV C +KICS+ C++LH+ETRC N
Sbjct: 245 SICGGYDSISSCVNCGNKICSVSCFKLHNETRCRN 279


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,506,026
Number of Sequences: 60738
Number of extensions: 459285
Number of successful extensions: 1497
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1492
Number of HSP's gapped (non-prelim): 1
length of query: 249
length of database: 30,389,216
effective HSP length: 104
effective length of query: 145
effective length of database: 24,072,464
effective search space: 3490507280
effective search space used: 3490507280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)