ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0593 good G KOG3076 Carbohydrate transport and metabolism 5'-phosphoribosylglycinamide formyltransferase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0593 197863 198507 215
(215 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR408c [G] KOG3076 5'-phosphoribosylglycinamide formyltransferase 273 1e-73
SPCC24E4.01 [G] KOG3076 5'-phosphoribosylglycinamide formyltrans... 144 1e-34
Hs4503915_2 [G] KOG3076 5'-phosphoribosylglycinamide formyltrans... 86 4e-17
7297208_3 [G] KOG3076 5'-phosphoribosylglycinamide formyltransfe... 82 4e-16
CE28304_2 [G] KOG3076 5'-phosphoribosylglycinamide formyltransfe... 78 1e-14
At1g31220 [G] KOG3076 5'-phosphoribosylglycinamide formyltransfe... 63 3e-10
>YDR408c [G] KOG3076 5'-phosphoribosylglycinamide formyltransferase
Length = 214
Score = 273 bits (698), Expect = 1e-73
Identities = 131/190 (68%), Positives = 163/190 (84%), Gaps = 2/190 (1%)
Query: 4 KVVVLISGSGSNLQALIDAKKEGKLPID--ICRVISSSKKAYGLTRSSDNGIPTIVQSLY 61
++VVLISGSGSNLQALIDA+K+G+L D I VISSSKKAYGLTR++DN IPT V SLY
Sbjct: 3 RIVVLISGSGSNLQALIDAQKQGQLGEDAHIVSVISSSKKAYGLTRAADNNIPTKVCSLY 62
Query: 62 SYTKDLSKDDKKGRAEARNKFEADLADLILKDSPDLVVCAGWLLILGPTFLKRLNGLPII 121
YTK ++K+DK RA+AR++FE DLA L+L++ PD+++CAGWLLILG TFL +L +PI+
Sbjct: 63 PYTKGIAKEDKAARAKARSQFENDLAKLVLEEKPDVIICAGWLLILGSTFLSQLQSVPIL 122
Query: 122 NLHPALPGAFDGTTHAIEMAWNKCQEQKRPLIAGCMVHYVIEEVDRGESLVIKELEIVPG 181
NLHPALPG FDGTTHAIEMAW KCQ++ +PL AGCMVHYVIEEVD+GE LV+K+LEI+PG
Sbjct: 123 NLHPALPGCFDGTTHAIEMAWRKCQDENKPLTAGCMVHYVIEEVDKGEPLVVKKLEIIPG 182
Query: 182 KESLEEYGTR 191
+E+LE+Y R
Sbjct: 183 EETLEQYEQR 192
>SPCC24E4.01 [G] KOG3076 5'-phosphoribosylglycinamide formyltransferase
Length = 207
Score = 144 bits (362), Expect = 1e-34
Identities = 91/193 (47%), Positives = 121/193 (62%), Gaps = 14/193 (7%)
Query: 1 MAPKVVVLISGSGSNLQALIDAKKEGKLPID--ICRVISSSKKAYGLTRSSDNGIPTIVQ 58
M +VVLISGSGSNLQA+IDA G L + + V+S+ K AYGL R++ GIPT +
Sbjct: 1 MVASLVVLISGSGSNLQAIIDATLNGVLKGEAAVTHVLSNRKNAYGLERAAKAGIPTSLH 60
Query: 59 SLYSYTKDLSKDDKKGRAEARNKFEADLADLILKDSPDLVVCAGWLLILGPTFLKRL--N 116
+L Y K+ G R K++A+LA+ I+K P LVVCAGW+ IL P L L N
Sbjct: 61 TLLPYKKEY------GPEIGRKKYDAELAEKIIKLQPSLVVCAGWMHILSPEVLIPLETN 114
Query: 117 GLPIINLHPALPGAFDGTTHAIEMAWNKCQEQKRPLIAGCMVHYVIEEVDRGESLVIKEL 176
+ IINLHPALPGAF+G HAIE A+ Q Q + G MVH+VI VD G+ ++++E+
Sbjct: 115 KIGIINLHPALPGAFNG-IHAIERAFEAAQ-QGKITHTGAMVHWVIAAVDEGKPIIVQEV 172
Query: 177 EIV--PGKESLEE 187
I+ E+LEE
Sbjct: 173 PILSTDSIEALEE 185
>Hs4503915_2 [G] KOG3076 5'-phosphoribosylglycinamide formyltransferase
Length = 209
Score = 85.9 bits (211), Expect = 4e-17
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 24/180 (13%)
Query: 4 KVVVLISGSGSNLQALIDAKKEGKLPIDICRVISSSKKAYGLTRSSDNGIPTIVQSLYSY 63
+V VLISG+GSNLQALID+ +E I VIS+ GL ++ GIPT V + Y
Sbjct: 8 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 67
Query: 64 TKDLSKDDKKGRAEARNKFEADLA-DLILKD-SPDLVVCAGWLLILGPTFLKRLNGLPII 121
+N+ E D A DL+L++ S D+V AG++ IL F+++ NG ++
Sbjct: 68 ---------------KNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNG-KML 111
Query: 122 NLHPALPGAFDGTTHAIEMAWNKCQEQKRPLIAGCMVHYVIEEVDRGESLVIKELEIVPG 181
N+HP+L +F G ++A E A + + GC VH+V E+VD G+ ++ + + + G
Sbjct: 112 NIHPSLLPSFKG-SNAHEQAL-----ETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRG 165
>7297208_3 [G] KOG3076 5'-phosphoribosylglycinamide formyltransferase
Length = 202
Score = 82.4 bits (202), Expect = 4e-16
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 22/179 (12%)
Query: 4 KVVVLISGSGSNLQALIDAKKEGKLPI--DICRVISSSKKAYGLTRSSDNGIPTIVQSLY 61
+V VLISG+GSNLQALIDA ++ I D+ VIS+ GL R++ GIP++V S
Sbjct: 4 RVAVLISGTGSNLQALIDATRDSAQGIHADVVLVISNKTGVLGLQRATQAGIPSLVIS-- 61
Query: 62 SYTKDLSKDDKKGRAEARNKFEADLADLILKDSPDLVVCAGWLLILGPTFLKRLNGLPII 121
KD + +R ++A+L + DL+ AG++ +L F++ G ++
Sbjct: 62 --HKDFA---------SREVYDAELTRNLKAARVDLICLAGFMRVLSAPFVREWRG-RLV 109
Query: 122 NLHPALPGAFDGTTHAIEMAWNKCQEQKRPLIAGCMVHYVIEEVDRGESLVIKELEIVP 180
N+HP+L + G H + A +++ +GC VH+V E VD G +V + I+P
Sbjct: 110 NIHPSLLPKYPG-LHVQKQALEAGEKE-----SGCTVHFVDEGVDTGAIIVQAAVPILP 162
>CE28304_2 [G] KOG3076 5'-phosphoribosylglycinamide formyltransferase
Length = 196
Score = 77.8 bits (190), Expect = 1e-14
Identities = 58/183 (31%), Positives = 94/183 (50%), Gaps = 23/183 (12%)
Query: 4 KVVVLISGSGSNLQALIDAKKEGKLPIDICRVISSSKKAYGLTRSSDNGIPTIVQSLYSY 63
+V +LISG+G+N+Q LI+ K D+ V+S+ + A GLT ++ GIPT + +
Sbjct: 9 RVAILISGTGTNMQKLIERSKTPDSNCDVVLVVSNKEGAGGLTIAASYGIPT---KVVPH 65
Query: 64 TKDLSKDDKKGRAEARNKFEADLADLILKDSPDLVVCAGWLLILGPTFLKRLNGLPIINL 123
T D R + +LA ++ +LV G++ IL P F+ + IIN+
Sbjct: 66 TAD------------RVTGDTELAQVLKDFGTELVCLGGYMRILSPCFISQFPS-RIINI 112
Query: 124 HPALPGAFDGTTHAIEMAWNKCQEQKRPLIAGCMVHYVIEEVDRGESLVIKELEIVPGKE 183
HP+L AF G HA++ A N I GC H+V E VD G+ ++ + +V +
Sbjct: 113 HPSLLPAFKG-AHALQDALNFGVR-----IVGCTAHFVDELVDHGD-IIAQRPVVVEDTD 165
Query: 184 SLE 186
++E
Sbjct: 166 TIE 168
>At1g31220 [G] KOG3076 5'-phosphoribosylglycinamide formyltransferase
Length = 292
Score = 63.2 bits (152), Expect = 3e-10
Identities = 50/189 (26%), Positives = 89/189 (46%), Gaps = 17/189 (8%)
Query: 4 KVVVLISGSGSNLQALIDAKKEGKLPIDICRVISSSKKAYGLTRSSDNGIPTIVQSLYSY 63
K+ V +SG GSN + + + +G + D+ ++++ K G + NGIP +V
Sbjct: 79 KLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDCGGAEYARSNGIPVLV------ 132
Query: 64 TKDLSKDDKKGRAEARNKFEADLADLILKDSPDLVVCAGWLLILGPTFLKRLNGLPIINL 123
K R + ++L D++ K D V+ AG+L ++ P L + I+N+
Sbjct: 133 ------FPKAKREPSDGLSPSELVDVLRKYGVDFVLLAGYLKLI-PVELVQAFPKRILNI 185
Query: 124 HPALPGAFDGT-THAIEMAWNKCQEQKRPLIAGCMVHYVIEEVDRGESLVIKELEIVPGK 182
HPAL AF G + I++ +K + +G +H+V EE D G L + ++
Sbjct: 186 HPALLPAFGGKGLYGIKV--HKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVI-AN 242
Query: 183 ESLEEYGTR 191
++ EE R
Sbjct: 243 DTPEELAKR 251
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,146,979
Number of Sequences: 60738
Number of extensions: 508536
Number of successful extensions: 1165
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 30,389,216
effective HSP length: 102
effective length of query: 113
effective length of database: 24,193,940
effective search space: 2733915220
effective search space used: 2733915220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)