ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0613 good A KOG1774 RNA processing and modification Small nuclear ribonucleoprotein E
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0613 205294 205016 -93
(93 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR159c [A] KOG1774 Small nuclear ribonucleoprotein E 114 3e-26
SPBC11G11.06c [A] KOG1774 Small nuclear ribonucleoprotein E 92 1e-19
Hs4507129 [A] KOG1774 Small nuclear ribonucleoprotein E 91 3e-19
Hs14741936 [A] KOG1774 Small nuclear ribonucleoprotein E 89 8e-19
Hs14765206 [A] KOG1774 Small nuclear ribonucleoprotein E 86 7e-18
CE22230 [A] KOG1774 Small nuclear ribonucleoprotein E 86 1e-17
7297315 [A] KOG1774 Small nuclear ribonucleoprotein E 86 1e-17
At4g30330 [A] KOG1774 Small nuclear ribonucleoprotein E 84 3e-17
At2g18740 [A] KOG1774 Small nuclear ribonucleoprotein E 82 1e-16
YER146w [A] KOG1775 U6 snRNA-associated Sm-like protein 48 2e-06
>YOR159c [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 94
Score = 114 bits (284), Expect = 3e-26
Identities = 55/92 (59%), Positives = 67/92 (72%)
Query: 1 MSGSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEI 60
MS MVPPINCI+N+L QT VT WL+EQ+ RI+GKI GFDEFMNVVID+A EI
Sbjct: 1 MSNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEI 60
Query: 61 AVDPKSGKESDDKAVFLGRIMLKGDNITLVVA 92
V+ GKE +K LG+I+LKGDNITL+ +
Sbjct: 61 PVNSADGKEDVEKGTPLGKILLKGDNITLITS 92
>SPBC11G11.06c [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 84
Score = 92.0 bits (227), Expect = 1e-19
Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 9/92 (9%)
Query: 1 MSGSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEI 60
MSG +V M+PPIN I+ L T V+ WL+EQ R++G+IRGFDEFMN+V+DDA +
Sbjct: 1 MSG-RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDA--V 57
Query: 61 AVDPKSGKESDDKAVFLGRIMLKGDNITLVVA 92
VD K+ K LGRI+LKGDNITL+ A
Sbjct: 58 QVDAKNNKRE------LGRILLKGDNITLIQA 83
>Hs4507129 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 92
Score = 90.9 bits (224), Expect = 3e-19
Identities = 49/88 (55%), Positives = 59/88 (66%), Gaps = 7/88 (7%)
Query: 3 GSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEIAV 62
G KV MV PIN I+ YL +++ + WLYEQV RI G I GFDE+MN+V+DDA EI
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 DPKSGKESDDKAVFLGRIMLKGDNITLV 90
KS K+ LGRIMLKGDNITL+
Sbjct: 67 KTKSRKQ-------LGRIMLKGDNITLL 87
>Hs14741936 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 92
Score = 89.4 bits (220), Expect = 8e-19
Identities = 48/88 (54%), Positives = 59/88 (66%), Gaps = 7/88 (7%)
Query: 3 GSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEIAV 62
G KV MV PIN I+ YL +++ + WLYEQV +I G I GFDE+MN+V+DDA EI
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 DPKSGKESDDKAVFLGRIMLKGDNITLV 90
KS K+ LGRIMLKGDNITL+
Sbjct: 67 KTKSRKQ-------LGRIMLKGDNITLL 87
>Hs14765206 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 92
Score = 86.3 bits (212), Expect = 7e-18
Identities = 47/88 (53%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 3 GSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEIAV 62
G KV MV PI+ I+ YL +++ + WLYEQV RI G I GFDE+MN+V+DDA EI
Sbjct: 7 GQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 DPKSGKESDDKAVFLGRIMLKGDNITLV 90
KS K+ LGRIMLKG NITL+
Sbjct: 67 KTKSRKQ-------LGRIMLKGGNITLL 87
>CE22230 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 90
Score = 85.5 bits (210), Expect = 1e-17
Identities = 45/92 (48%), Positives = 58/92 (62%), Gaps = 7/92 (7%)
Query: 1 MSGSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEI 60
MS K+ MV P+N I+ YL ++T V WLYE V R+ G I GFDEFMNVV D+A E+
Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 AVDPKSGKESDDKAVFLGRIMLKGDNITLVVA 92
+ K + +GRI+LKGDNITL+ A
Sbjct: 61 NMKTKGRNK-------IGRILLKGDNITLIHA 85
>7297315 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 94
Score = 85.5 bits (210), Expect = 1e-17
Identities = 44/86 (51%), Positives = 56/86 (64%), Gaps = 7/86 (8%)
Query: 5 KVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEIAVDP 64
KV MV PIN I+ YL +++ V WLYE + RI G I GFDE+MN+V+DDA E+ V
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKT 67
Query: 65 KSGKESDDKAVFLGRIMLKGDNITLV 90
+ + LGRIMLKGDNITL+
Sbjct: 68 RQRRN-------LGRIMLKGDNITLI 86
>At4g30330 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 86
Score = 84.0 bits (206), Expect = 3e-17
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 7/91 (7%)
Query: 1 MSGSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEI 60
M+ +KV M PIN I+ +L + + WL+EQ RI G+I GFDE+MN+V+D+A E+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 AVDPKSGKESDDKAVFLGRIMLKGDNITLVV 91
++ K+ K LGRI+LKGDNITL++
Sbjct: 61 SIKKKTRKP-------LGRILLKGDNITLMM 84
>At2g18740 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 88
Score = 82.0 bits (201), Expect = 1e-16
Identities = 40/91 (43%), Positives = 59/91 (63%), Gaps = 7/91 (7%)
Query: 1 MSGSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEI 60
M+ +KV M PIN I+ +L + + WL+EQ RI G+I GFDE+MN+V+D+A E+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 AVDPKSGKESDDKAVFLGRIMLKGDNITLVV 91
++ + K LGRI+LKGDNITL++
Sbjct: 61 SIKKNTRKP-------LGRILLKGDNITLMM 84
>YER146w [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 93
Score = 48.1 bits (113), Expect = 2e-06
Identities = 23/83 (27%), Positives = 44/83 (52%), Gaps = 4/83 (4%)
Query: 9 PMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEIAVDPKSGK 68
P + P+ I ++ + + Q G + GFD+F+NV+++DA E +DP+
Sbjct: 4 PEILPLEVIDKTINQKVLIVL----QSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDES 59
Query: 69 ESDDKAVFLGRIMLKGDNITLVV 91
++ GR++L G+NI ++V
Sbjct: 60 RNEKVMQHHGRMLLSGNNIAILV 82
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,566,276
Number of Sequences: 60738
Number of extensions: 195317
Number of successful extensions: 505
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 10
length of query: 93
length of database: 30,389,216
effective HSP length: 69
effective length of query: 24
effective length of database: 26,198,294
effective search space: 628759056
effective search space used: 628759056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)