ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI0705    suspect: LH   R     KOG1721  General function prediction only                               FOG: Zn-finger

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI0705  235501 233825 -559 
         (559 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR044c [R] KOG1721 FOG: Zn-finger                                    140   7e-33
Hs15451943 [R] KOG1721 FOG: Zn-finger                                  53   1e-06

>YGR044c [R] KOG1721 FOG: Zn-finger
          Length = 300

 Score =  140 bits (352), Expect = 7e-33
 Identities = 69/149 (46%), Positives = 93/149 (62%), Gaps = 2/149 (1%)

Query: 387 KKSVLQQILDDKPLMEAISKKQ-KRGAYKCAHCPEMFNTIFEFAKHIDEYQVERKYKCPF 445
           +KS + Q+  D  ++  IS+ Q KRG+Y C+HC E F T+ EFA H+DE+ +ER  KCP 
Sbjct: 151 QKSHVAQLYHDPKVLSTISEGQTKRGSYHCSHCSEKFATLVEFAAHLDEFNLERPCKCPI 210

Query: 446 PLCPWKILGLPKLQELKRHCLNQHIDELTPEQQYLIHGKSGAVSEVYHCESPYCDKAFHR 505
             CPWKILG  +   L+RHC +QHI EL  E +  ++ K      + +C  P C K F R
Sbjct: 211 EQCPWKILGFQQATGLRRHCASQHIGELDIEMEKSLNLKVEKYPGL-NCPFPICQKTFRR 269

Query: 506 KDSYRRHVKMVHKNPKSRFNIRLVKAMKS 534
           KD+Y+RHV MVH N  SRFN RL K + +
Sbjct: 270 KDAYKRHVAMVHNNADSRFNKRLKKILNN 298


>Hs15451943 [R] KOG1721 FOG: Zn-finger
          Length = 771

 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 44/188 (23%)

Query: 353 FNTAEEHTNNDVILNVHG---------CGSHYAEASTMNPD-----GTKKSVLQQIL--- 395
           + TAE+   N  +L VH          CG  +   S +        G K    Q  +   
Sbjct: 493 YETAEQGLLNRHLLAVHSKNFPHVCVECGKGFRHPSELKKHMRTHTGEKPYQCQYCIFRC 552

Query: 396 -DDKPLMEAISKKQKRGA-YKCAHCPEMFNTIFEFAKHIDEYQVERKYKCPFPLCPWKIL 453
            D   L   I  K      YKC HCP+ F    E  +H+D +Q  + ++CP   C  K  
Sbjct: 553 ADQSNLKTHIKSKHGNNLPYKCEHCPQAFGDERELQRHLDLFQGHKTHQCPH--CDHK-- 608

Query: 454 GLPKLQELKRHCLNQHIDELTPEQQYLIHGKSGAVSEVYHCESPYCDKAFHRKDSYRRHV 513
                 +LKRH ++ H  +                   + CE   CDK FHR    ++H 
Sbjct: 609 -STNSSDLKRHIISVHTKDFP-----------------HKCE--VCDKGFHRPSELKKH- 647

Query: 514 KMVHKNPK 521
             +HK  K
Sbjct: 648 SDIHKGRK 655


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,887,201
Number of Sequences: 60738
Number of extensions: 1485487
Number of successful extensions: 10661
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10651
Number of HSP's gapped (non-prelim): 5
length of query: 559
length of database: 30,389,216
effective HSP length: 112
effective length of query: 447
effective length of database: 23,586,560
effective search space: 10543192320
effective search space used: 10543192320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)