ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0824 good J KOG3051 Translation, ribosomal structure and biogenesis RNA binding/translational regulation protein of the SUA5 family
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0824 279951 281162 404
(404 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL169w [J] KOG3051 RNA binding/translational regulation protein... 491 e-138
SPCC895.03c [J] KOG3051 RNA binding/translational regulation pro... 331 1e-90
ECU09g1610 [J] KOG3051 RNA binding/translational regulation prot... 197 2e-50
CE22152 [J] KOG3051 RNA binding/translational regulation protein... 67 5e-11
At5g60590 [J] KOG3051 RNA binding/translational regulation prote... 65 2e-10
>YGL169w [J] KOG3051 RNA binding/translational regulation protein of the
SUA5 family
Length = 426
Score = 491 bits (1263), Expect = e-138
Identities = 261/410 (63%), Positives = 300/410 (72%), Gaps = 16/410 (3%)
Query: 10 TRILKVDPAAIHFSDSAHIDGSLPTFTCAETEKNLLEAAGIIRDTSETVAFPTETVYGLG 69
T+ILKV+P +I FS AHIDGSLPT T ETE L+EAA IIRDT ETVAFPTETVYGLG
Sbjct: 18 TKILKVNPLSIIFSPDAHIDGSLPTITDPETEAALVEAARIIRDTDETVAFPTETVYGLG 77
Query: 70 GSALNDESVKNIYKAKNRPSDNPLITHISSLSQLNRVIYSDISDDCKPL-SHVPEIYHPL 128
GSALND SV +IY+AKNRPSDNPLITH+SS+ QLNR +++ L ++P IY PL
Sbjct: 78 GSALNDNSVLSIYRAKNRPSDNPLITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPL 137
Query: 129 VEKLWPGPLTILLSIPDGSNRNTLSKLTTANQPTFACRIPANPIARALIALSDTPIAAPS 188
+ LWPGPLTILL +P S + LSKLTTA+QPTFA RIPANP+ARALIALSDTPIAAPS
Sbjct: 138 ISSLWPGPLTILLPVPS-SEHSALSKLTTADQPTFAVRIPANPVARALIALSDTPIAAPS 196
Query: 189 ANASTRPSPTTAEHVFHDLNGRIPLILDGGKCSVGVESTVVDGLVTPPMLLRPGGFTYEN 248
ANASTRPSPT A HV+HDL +IP+ILDGG C VGVESTVVDGL PP LLRPGGFTYE
Sbjct: 197 ANASTRPSPTLASHVYHDLKDKIPIILDGGACKVGVESTVVDGLCNPPTLLRPGGFTYEE 256
Query: 249 ILNIGGPLWKECLVETKVNIKDDEKVKTPGMKYRHYSPKAKVILLVP--EGDSQIISSER 306
I+ +GG W C VE K ++ EKV+TPGMKYRHYSP AKV+LLVP EGD + +R
Sbjct: 257 IVKLGGEAWSLCKVENKKTVEKGEKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDR 316
Query: 307 LGRLKSLVDKEI-IQQGAKKVAFLNSLHLNKHFIDGKC-----------IHESLGTTGKE 354
+ RLK L++ E+ KK+A L SL L + K I E LG +G+E
Sbjct: 317 MERLKRLIETELKANSNIKKIAILTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEE 376
Query: 355 IQANLFALLRKVDEEDNVDLIVVEGTEANEEGLAIMNRLRKAASNNIINF 404
IQ NLFA LRKVDE D VDLI VEG EGLA+MNRLRKAA+NN I F
Sbjct: 377 IQTNLFAALRKVDENDKVDLIFVEGINEEGEGLAVMNRLRKAAANNCIQF 426
>SPCC895.03c [J] KOG3051 RNA binding/translational regulation protein of the
SUA5 family
Length = 408
Score = 331 bits (848), Expect = 1e-90
Identities = 193/408 (47%), Positives = 259/408 (63%), Gaps = 25/408 (6%)
Query: 8 LTTRILKVDPAAIHF----SDSAH-IDGSLPTFTCAETEKNLLEAAGIIRDTSETVAFPT 62
+ T+I VD I F +DS H + + + +ET L AA I+R+T VAFPT
Sbjct: 1 METKIQTVDTRLISFEKPSNDSEHPFEHTRVSIPPSETRSALENAANILRNTDYPVAFPT 60
Query: 63 ETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHISSLSQLNRVI---YSDISDDCKPLS 119
ETVYGLG A E+V +IYKAKNRP+DNPLI H++SL QL R++ Y + K +
Sbjct: 61 ETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLLSAYPKAKSEVKNQA 120
Query: 120 H-----VPEIYHPLVEKLWPGPLTILLSIPDGSNRNTLSKLTTANQPTFACRIPANPIAR 174
H +P++Y PL++K WPGPL+ILL + D +N +S + TA Q TFA R+P +P+A
Sbjct: 121 HDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANP-PVSPIVTAGQKTFAVRMPQHPVAL 179
Query: 175 ALIALSDTPIAAPSANASTRPSPTTAEHVFHDLNGRIPLILDGGKCSVGVESTVVDGLVT 234
ALI++SD+P+AAPSANASTRPSPT A+HV++DL G+IPLILDGG C VGVESTVV+GL
Sbjct: 180 ALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGGACGVGVESTVVNGLCD 239
Query: 235 PPMLLRPGGFTYENILNIGGPLWK--ECLVETKVNIKDDEKVKTPGMKYRHYSPKAKVIL 292
PP++LRPGG + E I + GG W+ + V K +++ D +TPGMKYRHYSP AKV+L
Sbjct: 240 PPVILRPGGISLEEIQSSGG-AWERTKVFVAKKSDMETDFIPQTPGMKYRHYSPTAKVLL 298
Query: 293 LVPEGDSQIISSERLGRLKSLVDKEIIQQGAKKVAFLNSLHLNKHFIDGKC--IHESLGT 350
V S+ G + + ++ I + +K+ L S N+ C + +G
Sbjct: 299 FV-----NYTESDAYGVFEKYLSEQGITKEKQKIGVLCSKRWNEESFPSHCPFVFLHMGR 353
Query: 351 TGKEIQANLFALLRKVDEEDNVDLIVVEGTEANEEGLAIMNRLRKAAS 398
G EI NLFA LR +D + VD ++VEG EGLAIMNRL KAAS
Sbjct: 354 DGHEITKNLFAQLRDLDLQ-GVDFVLVEGVSEENEGLAIMNRLGKAAS 400
>ECU09g1610 [J] KOG3051 RNA binding/translational regulation protein of the
SUA5 family
Length = 337
Score = 197 bits (501), Expect = 2e-50
Identities = 127/355 (35%), Positives = 188/355 (52%), Gaps = 30/355 (8%)
Query: 45 LEAAGIIRDTSETVAFPTETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHISSLSQLN 104
L+A ++R + VA PTETVYGL S N +V+ + K K RP+DNPL +SS L
Sbjct: 9 LDADFVVRFFDDVVAVPTETVYGLAASIYNPRAVERLLKLKRRPADNPLPVAVSSYRMLK 68
Query: 105 RVIYSDISDDCKPLSHVPEIYHPLVEKLWPGPLTILLSIPDGSNRNTLSKLTTANQPTFA 164
++ I PE Y L++ WPGPLT+L +++ +S + + + A
Sbjct: 69 EIVKEPI----------PEEYRRLMDMFWPGPLTLLFR-----SKDCVSSVIRSGLESVA 113
Query: 165 CRIPANPIARALIALSDTPIAAPSANASTRPSPTTAEHVFHDLNGRIPLILDGGKCSVGV 224
R+P + +I P+ PSAN S RPSPTTA HV D + LI+DGG C +G+
Sbjct: 114 VRMPKSKHLLEIIERLGAPVVLPSANISGRPSPTTAGHVVEDFGDEVKLIIDGGPCPIGL 173
Query: 225 ESTVVDGLVTPPMLLRPGGFTYENILNIGGPLWKECLVETKVNIKDDEKVKTPGMKYRHY 284
ESTVV +LRPGG T E+I ++ C V + D+E +PG KY+HY
Sbjct: 174 ESTVVSYADGGLQILRPGGITVEDIESVA-----NCKVFVRNRANDEETELSPGQKYKHY 228
Query: 285 SPKAKVILLVPEGDSQIISSERLGRLKSLVDKEIIQQGAKKVAFLNSLHLNKHFIDGKCI 344
SP++ +IL +G + + S L +++ D I VA + + L +DG+
Sbjct: 229 SPRSPLILF--KGQPEEVKSGILEYIRANPDVSRI-----GVALHSGIDLGVP-VDGRIS 280
Query: 345 HESLGTTGKEIQANLFALLRKVDEEDNVDLIVVEGTEANEEGLAIMNRLRKAASN 399
++G+ +E+ NLF LR +D+ +V I+ G + EEG AIMNRL KAA +
Sbjct: 281 VFNMGSDRREVCRNLFEGLRSLDKISSV--ILAAGVDYGEEGDAIMNRLEKAADS 333
>CE22152 [J] KOG3051 RNA binding/translational regulation protein of the
SUA5 family
Length = 244
Score = 67.0 bits (162), Expect = 5e-11
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 38 AETEKNLLEAAGIIRDTSETVAFPTETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHI 97
A+ + ++AA + VA PT+T+YG+ S L S + +Y K RP + PL +
Sbjct: 12 ADNIEEAIDAAVCVFLRGGIVALPTDTLYGI--STLLQYSDR-LYALKQRPYEKPLGIFL 68
Query: 98 SSLSQLNRVIYSDISDDCKPLSHVPEIYHPLVEKLWPGPLTILLS----IPDGSNRNTLS 153
S + + V ISD+ L L PGP+T++ +P N ++
Sbjct: 69 PSPTAMKLVSRQTISDE-------------LANCLLPGPVTLMFERLPCLPAEFNPGVVN 115
Query: 154 KLTTANQPTFACRIPANPIARALIALSDTPIAAPSANAS-TRPSPTTAEHVFHDLNGRIP 212
ACR+P PI + P+A SAN S + +PT+ +H F DL+ I
Sbjct: 116 ---------VACRVPDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDH-FRDLHPNID 165
Query: 213 LILDGGK-CSVGVESTVVD 230
LILD G S G ST+VD
Sbjct: 166 LILDAGSIISSGEGSTIVD 184
>At5g60590 [J] KOG3051 RNA binding/translational regulation protein of the
SUA5 family
Length = 257
Score = 64.7 bits (156), Expect = 2e-10
Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 19/205 (9%)
Query: 40 TEKNLLEAAGIIRDTSETVAFPTETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHISS 99
TE EA I+ + + +A PT+T+YG A + E+V IY+ K R +PL +
Sbjct: 41 TEAYAQEAIEAIK-SEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGD 99
Query: 100 LSQLNRVIYSDISDDCKPLSHVPEIYHPLVEKLWPGPLTILLSIPDGSNRNTLSKLTTAN 159
+ + RV + SH+P H L++ L PGP+T++L + S L K
Sbjct: 100 VLDIKRVATT---------SHLP---HGLLDSLLPGPVTLVLQRGESS---ILEKSLNPG 144
Query: 160 QPTFACRIPANPIARALIALSDTPIAAPSANASTRPSPTTAEHVFHDLNGRIPLILDGGK 219
T R+P R + S + +A SAN S S + F +L + DGG
Sbjct: 145 IGTIGVRVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKD-FENLWQHCAYVYDGGL 203
Query: 220 CSVG-VESTVVD-GLVTPPMLLRPG 242
G ST+VD V ++RPG
Sbjct: 204 LPSGRAGSTIVDLTKVGKYKIIRPG 228
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,801,990
Number of Sequences: 60738
Number of extensions: 1124092
Number of successful extensions: 2863
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2844
Number of HSP's gapped (non-prelim): 5
length of query: 404
length of database: 30,389,216
effective HSP length: 109
effective length of query: 295
effective length of database: 23,768,774
effective search space: 7011788330
effective search space used: 7011788330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)