ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0948 good J KOG2314 Translation, ribosomal structure and biogenesis Translation initiation factor 3, subunit b (eIF-3b)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0948 320828 323023 732
(732 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR361c [J] KOG2314 Translation initiation factor 3 subunit b (e... 786 0.0
SPAC25G10.08 [J] KOG2314 Translation initiation factor 3 subunit... 437 e-122
Hs4503527 [J] KOG2314 Translation initiation factor 3 subunit b ... 371 e-102
7302767 [J] KOG2314 Translation initiation factor 3 subunit b (e... 330 5e-90
At5g25780 [J] KOG2314 Translation initiation factor 3 subunit b ... 303 5e-82
At5g27640 [J] KOG2314 Translation initiation factor 3 subunit b ... 295 2e-79
CE20310 [J] KOG2314 Translation initiation factor 3 subunit b (e... 214 3e-55
At1g49010_2 [J] KOG2314 Translation initiation factor 3 subunit ... 68 4e-11
At1g73180 [J] KOG2315 Predicted translation initiation factor re... 68 6e-11
>YOR361c [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 763
Score = 786 bits (2030), Expect = 0.0
Identities = 375/710 (52%), Positives = 513/710 (71%), Gaps = 15/710 (2%)
Query: 3 TLESLKIEDIPVDDIDFSDLEREFQIQDGGVNFDNFLVVDGAPVAPEAKVPVLEKVLTKL 62
T E +K+EDIPVDDIDFSDLE ++++ + NFD ++VV+GAPV P AKVPVL+K LT L
Sbjct: 44 TFEDIKLEDIPVDDIDFSDLEEQYKVTEE-FNFDQYIVVNGAPVIPSAKVPVLKKALTSL 102
Query: 63 FSQAGKVLDMQIPVED--GKTKGHLFIEMESVSAAKEAIQLFNGKKLDAKHRLLVNSLND 120
FS+AGKV++M+ P+++ GKTKG LF+E S++ AK+ I+ F+GK+LD KHRL + ++ D
Sbjct: 103 FSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 162
Query: 121 MEKYGSDDFESQSHEPVVPDFAPTDFLRSWLQNQDGRDQFVLQKGDMTRVFWNRLAHQPD 180
+E+Y SDDF+++ EP +P F P+ L+SWL + RDQFVLQ T VFWN + ++ D
Sbjct: 163 VERYNSDDFDTEFREPDMPTFVPSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEED 222
Query: 181 GVGEARKNWSNDVVKFSPKGTYLLSFHDQGVTSWGGPNFDRLKRFFHPDVSRLDVSPTEK 240
+ E+R+NWS + V+FSPKGTYL S+H QGVT+WGGPNFDRL+RF+HPDV VSP EK
Sbjct: 223 SLVESRENWSTNYVRFSPKGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEK 282
Query: 241 FLITFSMNPIKPGEDTPFGP---ESEGHQICVWDLATGFLMKTFGIPPNAKLQWPLIRFS 297
+L+TFS PI ED F P ++EGHQ+C+WD+A+G LM TF + + L+WPL+R+S
Sbjct: 283 YLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWS 342
Query: 298 YDDKYCGRLGPNALAIYDIENNFQLLDGKLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTL 357
Y+DKYC R+ ++L ++D NF L+ K K GI+DFSFAP+GV+L R +P+ L
Sbjct: 343 YNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVL 402
Query: 358 LAYWTPETNNQSCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHEQADFVCFQVDRHTKSKK 417
LAYWTPETNN +C A + +P R++KTVNLVQVSNV++HW QA+F+CF V+RHTKS K
Sbjct: 403 LAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGK 462
Query: 418 TFFTNLEICKLNESEIPVEKIEMKDRVLELAWEPKGTRFVTISKMDNGGEENPMYPKNFV 477
T F+NL+IC+L E +IPVEK+E+KD V E WEP G RFVTIS + + N P N +
Sbjct: 463 TQFSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNRFVTIS-VHEVADMNYAIPANTI 521
Query: 478 KFFAPEKKDNKDKDLAVLPDQLKWKLVKTVDQQFANCISWSPAGRFVAVCTIVNGKEIKK 537
+F+APE K+ D V+ +W LVK + + FAN +SWSPAGRFV V +V G +++
Sbjct: 522 RFYAPETKEKTD----VIK---RWSLVKEIPKTFANTVSWSPAGRFVVVGALV-GPNMRR 573
Query: 538 ASLDFYDFDFTGEKTLNEVQDVKASLQAVAHIDNQFFTDLEWDSSGRFLTAWSSYSKHKL 597
+ L FYD D+ GEK +N+ DV ASL+ VAH T++ WD SGR++TAWSS KHK+
Sbjct: 574 SDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKV 633
Query: 598 ENGYTIYNCCGEAVRKEIVDQFRNFVWRPRPESLLSNAEKKKARKNLKQWSVKFEEQDAM 657
E+GY I+N G V+++I+ F+NF WRPRP S+LSNAE+KK RKNL++WS +FEEQDAM
Sbjct: 634 EHGYKIFNIAGNLVKEDIIAGFKNFAWRPRPASILSNAERKKVRKNLREWSAQFEEQDAM 693
Query: 658 ESDSALRDLILKRRAELSAWVSYREQSKERLESEDSYTIFDNFESDKADE 707
E+D+A+RDLIL +R L W YRE+ + +E ++ IFD D +D+
Sbjct: 694 EADTAMRDLILHQRELLKQWTEYREKIGQEMEKSMNFKIFDVQPEDASDD 743
>SPAC25G10.08 [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 725
Score = 437 bits (1125), Expect = e-122
Identities = 254/717 (35%), Positives = 406/717 (56%), Gaps = 54/717 (7%)
Query: 4 LESLKIEDIPVDD-IDFSDLEREFQIQDGGVNFDNFLVVDGAPVAPEAKVPVLEKVLT-K 61
+E +K + + D+ ID S+LE + + V +D +V++GAPV EAK + L+ K
Sbjct: 6 IEEIKDQIVVKDEEIDVSELEVKLNVTKP-VGYDTVVVIEGAPVVEEAKQQDFFRFLSSK 64
Query: 62 LFSQAGKVLD--MQIPVEDGKTK----GHLFIEMESVSAAKEAIQLFNGKKLDAKHRLLV 115
+ ++ GKV + +P E+ K G +F + E+V A +Q +GK++ H +V
Sbjct: 65 VLAKIGKVKENGFYMPFEEKNGKKMSLGLVFADFENVDGADLCVQELDGKQILKNHTFVV 124
Query: 116 NSLNDMEKYGS--DDFESQSHEPVVPDFAPTDFLRSWLQNQDGRDQFVLQKGDMTRVFWN 173
LN +EK S D+F + E F + LRSWL + GRDQF+ G+ V WN
Sbjct: 125 RKLNQLEKAFSTPDEFSFEERE-----FKEREHLRSWLTDYYGRDQFISYYGNRVSVNWN 179
Query: 174 RLAHQPDGVGEARKNWSNDVVKFSPKGTYLLSFHDQGVTSWGGPNFDRLKRFFHPDVSRL 233
R + P+ + + R+NW+ V++SP GTYL+S H +G+ WGG ++ RF HP V +
Sbjct: 180 RKSDVPEQIVD-RENWTETYVQWSPMGTYLVSLHLRGIQLWGGESWGMCARFLHPYVKFV 238
Query: 234 DVSPTEKFLITFSMNPIK------PGEDT-PFGPESEGHQICVWDLATGFLMKTFGIPPN 286
D SP EK+L+++S P++ P +T PF + EG VWD+A+G ++++F IPP
Sbjct: 239 DFSPNEKYLVSWSYEPVRLPPIGHPARETMPFTDDDEGKHCFVWDIASGRILRSFKIPPQ 298
Query: 287 A-------KLQWPLIRFSYDDKYCGRLGPN-ALAIYDIENNFQLLDGKLHKVEGIQDFSF 338
K+ WP+ ++S DDKY R+ ++++Y+ + L+D K K++G+Q+F +
Sbjct: 299 PEGSKDGKKVIWPIFKWSADDKYLARVTVGQSISVYETPS-LALVDKKTIKIDGVQNFEW 357
Query: 339 APKGVQLTYNRRKSDPTTLLAYWTPETNNQSCKAFLMTLPNKRIVKTVNLVQVSNVSIHW 398
P L + ++ LLAYWTPE NQ + L+++P+K ++T NL VS+ ++W
Sbjct: 358 CPVSDALGRDSKEQ----LLAYWTPEITNQPARVALISIPSKSTIRTKNLFNVSDCKLYW 413
Query: 399 HEQADFVCFQVDRHTKSKKTFFTNLEICKLNESEIPVEKIEMKDRVLELAWEPKGTRFVT 458
D++C +VDRHTK+KK+ F+NLEI ++ E IPVE +++KD VL AWEPK RF
Sbjct: 414 QSNGDYLCVKVDRHTKTKKSTFSNLEIFRIREKNIPVEVVDLKDVVLNFAWEPKSDRFAI 473
Query: 459 ISKMDNGGEENPMYPKNFVKFFAPEKKDNKDKDLAVLPDQLKWKLVKTVDQQFANCISWS 518
IS D N K + F+ E+K N ++ + T D++ N + +
Sbjct: 474 ISANDQ--VLNSTNVKTNLSFYGFEQKKNTPS---------TFRHIITFDKKTCNSLFMA 522
Query: 519 PAGRFVAVCTIVNGKEIKKASLDFYDFDFTGEKTLNEVQDVKASLQAVAHIDNQFFTDLE 578
P GRF+ T+ + + L+FYD DF EK + D A++Q + ++ T+LE
Sbjct: 523 PKGRFMVAATLGSSTQY---DLEFYDLDFDTEK---KEPDALANVQQIGSAEHFGMTELE 576
Query: 579 WDSSGRFLTAWSSYSKHKLENGYTIYNCCGEAVRKEIVDQFRNFVWRPRPESLLSNAEKK 638
WD SGR++T S+ +HKLENGY + + G +R+E++ +F+ F+WRPRP S L+ + K
Sbjct: 577 WDPSGRYVTTSSTIWRHKLENGYRLCDFRGTLLREEMIGEFKQFIWRPRPPSPLTKEDMK 636
Query: 639 KARKNLKQWSVKFEEQDAMESDSALRDLILKRRAELSAWVSYREQSKERLESEDSYT 695
K RK LK ++ F+E+D E SA R+L +RR +S W YR++ R+ E + T
Sbjct: 637 KIRKKLKDYNRLFDEEDIAEQSSANRELAARRRQLISEWQKYRDEVIARVAEERAIT 693
>Hs4503527 [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 873
Score = 371 bits (953), Expect = e-102
Identities = 224/693 (32%), Positives = 369/693 (52%), Gaps = 87/693 (12%)
Query: 9 IEDIPVDDIDFSDLEREFQIQDGGVNFDNFLVVDGAPVAPEAKVPVLEKVLTKLFSQAGK 68
++D+ +++ L+ Q DG D+ +VVD P ++ L+ V+ K+FS+ GK
Sbjct: 160 VDDVSEEELLGDVLKDRPQEADG---IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK 216
Query: 69 VLDMQIPVEDGKTKGHLFIEMESVSAAKEAIQLFNGKKLDAKHRLLVNSLNDMEKYG--S 126
+ + P EDGKTKG++F+E S + A +A++ +G KLD +H VN D +KY S
Sbjct: 217 ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTIS 276
Query: 127 DDFESQSHEPVVPDFAPTDFLRSWLQNQDGRDQF--VLQKGDMTRVFWNRLAHQPDGVGE 184
D+++ +P F LR WL+ + RDQ+ + + GD T +FWN + P + E
Sbjct: 277 DEWDIPEKQP----FKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK-DPVSI-E 330
Query: 185 ARKNWSNDVVKFSPKGTYLLSFHDQGVTSWGGPNFDRLKRFFHPDVSRLDVSPTEKFLIT 244
R W+ V++SPKGTYL +FH +G+ WGG F +++RF H V +D SP E++L+T
Sbjct: 331 ERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVT 390
Query: 245 FSMNPIKPGEDTPFGPESEGHQICVWDLATGFLMKTFGIPPNAKLQWPLIRFSYDDKYCG 304
FS P+ +D P I +WD+ TG + F +A WP+ ++S+D K+
Sbjct: 391 FS--PLMDTQDDP-------QAIIIWDILTGHKKRGFHCESSA--HWPIFKWSHDGKFFA 439
Query: 305 RLGPNALAIYDIENNFQLLDGKLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWTPE 364
R+ + L+IY+ + LLD K K+ GI+DFS++P G ++A+W PE
Sbjct: 440 RMTLDTLSIYETPS-MGLLDKKSLKISGIKDFSWSPGG-------------NIIAFWVPE 485
Query: 365 TNNQSCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHEQADFVCFQVDRHTKSKKTFFTNLE 424
+ + LM LP ++ ++ NL V + +HW + D++C +VDR K + TN E
Sbjct: 486 DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFE 545
Query: 425 ICKLNESEIPVEKIEMKDRVLELAWEPKGTRFVTISKMDNGGEENPMYPKNFVKFFAPEK 484
I ++ E ++PV+ +EMK+ ++ AWEP G++F + GE P+ V F+
Sbjct: 546 IFRMREKQVPVDVVEMKETIIAFAWEPNGSKFAVLH-----GEA----PRISVSFY--HV 594
Query: 485 KDNKDKDLAVLPDQLKWKLVKTVDQQFANCISWSPAGRFVAVCTIVNGKEIKKASLDFYD 544
K+N K +L+K D+Q AN I WSP G+FV ++ G +L F D
Sbjct: 595 KNNG-----------KIELIKMFDKQQANTIFWSPQGQFV----VLAGLRSMNGALAFVD 639
Query: 545 FDFTGEKTLNEVQDVKASLQAVAHIDNQFFTDLEWDSSGRFLTAWSSYSKHKLENGYTIY 604
T + T+ + ++ +D+EWD +GR++ S+ HK++N Y ++
Sbjct: 640 ---TSDCTVMNI------------AEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 684
Query: 605 NCCGEAVRKEIVDQFRNFVWRPRPESLLSNAEKKKARKNLKQWSVKFEEQDAMESDSALR 664
G ++K D+F +WRPRP +LLS + K+ +K+LK++S FE++D + A +
Sbjct: 685 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASK 744
Query: 665 DLILKRRAELSAWVSYR--------EQSKERLE 689
+L+ +RR + + YR EQ ERLE
Sbjct: 745 ELVERRRTMMEDFRKYRKMAQELYMEQKNERLE 777
>7302767 [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 690
Score = 330 bits (846), Expect = 5e-90
Identities = 216/732 (29%), Positives = 359/732 (48%), Gaps = 106/732 (14%)
Query: 5 ESLKIEDIP--VDDIDFSDLEREFQIQ-----DGGVNFDNFLVVDGAPVAPEAKVPVLEK 57
E +D P VD+I DL + Q DG ++ +VVD P ++ L+
Sbjct: 21 EEPNFDDPPGFVDNISDEDLLGDMLAQRPSEADG---VESVVVVDNIPKVEPVRLEKLKL 77
Query: 58 VLTKLFSQAGKVLDMQIPV-EDGKTKGHLFIEMESVSAAKEAIQLFNGKKLDAKHRLLVN 116
V+ KLFS G+++++ PV E+GKTKG+ F+E + A+EA++ N +LD H VN
Sbjct: 78 VINKLFSNYGEIVNVVYPVDEEGKTKGYAFMEYKQARQAEEAVKKLNNHRLDKNHTFAVN 137
Query: 117 SLNDMEKYGSDDFESQSHEPVVPDFAPTDFLRSWLQNQDGRDQFVLQKGDMTRV----FW 172
D +KY ++ + P V F L +++ + D DQ+ + FW
Sbjct: 138 LFTDFQKY--ENIPEKWEPPTVQTFKVQSDLYNFINDPDTYDQYCVAAETAPNCVQVGFW 195
Query: 173 NRLAHQPDGVGEARKNWSNDVVKFSPKGTYLLSFHDQGVTSWGGPNFDRLKRFFHPDVSR 232
+ +P + E R+ +++ VK+SP GTY+++FH GV WGG +F ++++F HP
Sbjct: 196 QNVLPEPFEL-ETRERFTDTFVKWSPLGTYVVTFHKPGVAIWGGSSFQKIQKFPHPGTQF 254
Query: 233 LDVSPTEKFLITFSMNPIKPGEDTPFGPESEGHQICVWDLATGFLMKTFGIPPNAKLQWP 292
++ SP E +L+T+ GP G +I +WD+ TG ++F + L
Sbjct: 255 VEFSPCENYLVTY-------------GPTPTGQKIIIWDIRTGAEKRSFVADGMSVLS-- 299
Query: 293 LIRFSYDDKYCGRLGPNALAIYDIENNFQLLDGKLHKVEGIQDFSFAPKGVQLTYNRRKS 352
+ R+S+DDK+ R+G N++ IY+ + F LLD K K+ GI+ FS++P
Sbjct: 300 MFRWSHDDKFVARMGENSIHIYETPS-FYLLDLKSIKIPGIRGFSWSPTD---------- 348
Query: 353 DPTTLLAYWTPETNNQSCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHEQADFVCFQVDRH 412
++AYW E N + LM +P KR ++ NL V++ +HW + D++C +VDR+
Sbjct: 349 ---NVIAYWVEEQNQIPARVTLMEIPKKREIRNKNLFHVADCKLHWQKSGDYLCVKVDRY 405
Query: 413 TKSKKT----------FFTNLEICKLNESEIPVEKIEMKDRVLELAWEPKGTRFVTISKM 462
+K KK F N EI + E EIPV+ +E+++ +L AWEP G +F I
Sbjct: 406 SKLKKDKKDLDVKFLGMFYNFEIFHMREKEIPVDSVEIRELILAFAWEPVGNKFSIIH-- 463
Query: 463 DNGGEENPMYPKNFVKFFAPEKKDNKDKDLAVLPDQLKWKLVKTVDQQFANCISWSPAGR 522
GE N + V F+ K +K LVK ++++ + WSP G+
Sbjct: 464 ---GETN----SSNVSFYEVNKG-------------VKPSLVKRLEKKSCTHLFWSPRGQ 503
Query: 523 FVAVCTIVNGKEIKKASLDFYDFDFTGEKTLNEVQDVKASLQAVAHIDNQFFTDLEWDSS 582
F+ + + G F+F D A D+ +++EWD +
Sbjct: 504 FIVMANLTMGT-----------FEFV---------DSTNDYIITASPDHFRASEVEWDPT 543
Query: 583 GRFLTAWSSYSKHKLENGYTIYNCCGEAVRKEIVDQFRNFVWRPRPESLLSNAEKKKARK 642
GR++ S K K + G+ +Y G +++ I+ F F+WRPRP +LLS ++K+ +K
Sbjct: 544 GRYVVTGVSSWKVKEDTGFNMYTFQGRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKK 603
Query: 643 NLKQWSVKFEEQDAMESDSALRDLILKRRAELSAWVSYREQSKERLESEDSYTIF----- 697
NLK++ FE++D + A ++L+ KR ++ YR + + S I
Sbjct: 604 NLKKYYAAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWAEQKSRRIMLRGHV 663
Query: 698 --DNFESDKADE 707
DN E+D+ DE
Sbjct: 664 DTDNLETDEVDE 675
>At5g25780 [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 730
Score = 303 bits (777), Expect = 5e-82
Identities = 209/714 (29%), Positives = 349/714 (48%), Gaps = 102/714 (14%)
Query: 15 DDIDFSDLEREFQIQDGGVNFDNFLVVDGAPVAPEAKVPVLEKVLTKLFSQAGKVLD--- 71
D+ + D + EF F N +VVD PV P+ K LE V+ K+++Q G + +
Sbjct: 40 DESVYQDDQSEFD-----TGFGNIIVVDHLPVVPKEKFEKLEGVVKKIYNQLGVIKENGL 94
Query: 72 -MQIPVEDGKTKGHLFIEMESVSAAKEAIQLFNGKKLDAKHRLLVNSLNDMEKYGS--DD 128
M + + T G+ FIE + A+ A + +G KLD H VN +D ++ + ++
Sbjct: 95 LMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEE 154
Query: 129 FESQSHEPVVPD------------FAPTDFLRSWLQNQDGRDQFVLQKGDMTRVFWNRLA 176
+E P VP F + L+ WL + RDQ V++ G T V+WN
Sbjct: 155 WEPPQERPYVPGPFEVLGLDTYMVFVFQENLQKWLTDDKARDQLVIRFGHDTEVYWNDAR 214
Query: 177 HQPDGVGEARKNWSNDVVKFSPKGTYLLSFHDQGVTSWGGPN-FDRLKRFFHPDVSRLDV 235
+ R W+ V++SP GTYL++ H QG WGG + F RL R+ H V +D
Sbjct: 215 QKKPEPVHKRSYWTESYVQWSPIGTYLVTLHKQGAAVWGGADTFTRLMRYQHSMVKLVDF 274
Query: 236 SPTEKFLITF-SMNPIKPGEDTPFGPESEGHQICVWDLATGFLMKTF----------GIP 284
SP EK+L+T+ S P P + + +I V+D+ TG +M+ F G
Sbjct: 275 SPGEKYLVTYHSQEPSNPRDASKV-------EIKVFDVRTGRMMRDFKGSADEFSIGGPG 327
Query: 285 PNAKLQWPLIRFS--YDDKYCGRLGPNALAIYDIENNFQLLDGKLHKVEGIQDFSFAPKG 342
A WP+ R++ DDKY +L N +++Y+ E F L+D K KV+ + D ++P
Sbjct: 328 GVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETE-TFSLIDKKSMKVDNVVDICWSP-- 384
Query: 343 VQLTYNRRKSDPTTLLAYWTPET--NNQSCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHE 400
++L+ + PE NQ K L+ +P+K ++ NL VS+ ++W
Sbjct: 385 -----------TDSILSLFVPEQGGGNQPAKVALVQIPSKVELRQKNLFSVSDCKMYWQS 433
Query: 401 QADFVCFQVDRHTKSKKTFFTNLEICKLNESEIPVEKIEM---KDRVLELAWEPKGTRFV 457
+++ +VDR+TK+KK+ ++ E+ ++ E +IP+E +E+ D+++ AWEPKG RF
Sbjct: 434 SGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 493
Query: 458 TISKMDNGGEENPMYPKNFVKFFAPEKKDNKDKDLAVLPDQLKWKLVKTVDQQFANCISW 517
I G++ P+ V F++ + N + + T+ + AN + W
Sbjct: 494 VIH-----GDQ----PRPDVSFYSMKTAQNTG----------RVSKLATLKAKQANALFW 534
Query: 518 SPAGRFVAVCTIVNGKEIKKASLDFYDFDFTGEKTLNEVQDVKASLQAVAHIDNQFFTDL 577
SP G+++ I+ G + L+F++ D L+ +A ++ TD+
Sbjct: 535 SPTGKYI----ILAGLKGFNGQLEFFNVD---------------ELETMATAEHFMATDI 575
Query: 578 EWDSSGRFLTAWSSYSKHKLENGYTIYNCCGEAVRKEIVDQFRNFVWRPRPESLLSNAEK 637
EWD +GR++ A S + H++ENG+TI++ G V + + D F WRPRP S L+ ++
Sbjct: 576 EWDPTGRYV-ATSVTTVHEMENGFTIWSFNGNMVYRILKDHFFQLAWRPRPASFLTAEKE 634
Query: 638 KKARKNLKQWSVKFEEQDAMESDSALRDLILKRRAELSAWVSYREQSKERLESE 691
++ KNL+ +S ++E +D S KRRA W + Q K E E
Sbjct: 635 EEIAKNLRNYSKRYEAEDQDVSLLLSEQDREKRRALNEEWQKWVMQWKSLHEEE 688
>At5g27640 [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 738
Score = 295 bits (754), Expect = 2e-79
Identities = 207/726 (28%), Positives = 348/726 (47%), Gaps = 116/726 (15%)
Query: 15 DDIDFSDLEREFQIQDGGVNFDNFLVVDGAPVAPEAKVPVLEKVLTKLFSQAGKVLD--- 71
D+ + D + EF F N +VVD PV P+ K LE V+ K+++Q G + +
Sbjct: 39 DEAVYQDDQSEFD-----TGFGNIIVVDHLPVVPKEKFEKLEGVVKKIYNQLGVIKENGL 93
Query: 72 -MQIPVEDGKTKGHLFIEME--------------------------SVSAAKEAIQLFNG 104
M + + T G+ FIE S+ A+ A + +G
Sbjct: 94 WMPVDPDTKMTLGYCFIEFNTPQKGAQTRLFLMVEYFLRVSLNVWGSLQEAQNAKEKSHG 153
Query: 105 KKLDAKHRLLVNSLNDMEKYGSDDFESQSHEPVVPDFAPTDFLRSWLQNQDGRDQFVLQK 164
KLD H VN +D ++ + + + P + P + L+ WL ++ RDQ V++
Sbjct: 154 YKLDKSHIFAVNMFDDFDRLMN--VKEEWEPPQARPYVPGENLQKWLTDEKARDQLVIRS 211
Query: 165 GDMTRVFWNRLAHQPDGVGEARKNWSNDVVKFSPKGTYLLSFHDQGVTSWGGPN-FDRLK 223
G T VFWN + R W+ V++SP GTYL++ H QG WGG + F RL
Sbjct: 212 GPDTEVFWNDTRQKAPEPVHKRPYWTESYVQWSPLGTYLVTLHKQGAAVWGGADTFTRLM 271
Query: 224 RFFHPDVSRLDVSPTEKFLITF-SMNPIKPGEDTPFGPESEGHQICVWDLATGFLMKTF- 281
R+ H V +D SP EK+L+T+ S P P + + +I V+D+ TG +M+ F
Sbjct: 272 RYQHSMVKLVDFSPGEKYLVTYHSQEPSNPRDASKV-------EIKVFDVRTGRMMRDFK 324
Query: 282 ---------GIPPNAKLQWPLIRFS--YDDKYCGRLGPNALAIYDIENNFQLLDGKLHKV 330
G A WP+ R++ DDKY +L N +++Y+ E F L+D K KV
Sbjct: 325 GSADEFSIGGPGGVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETE-TFSLIDKKSMKV 383
Query: 331 EGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWTPET--NNQSCKAFLMTLPNKRIVKTVNL 388
+ + D ++P ++L+ + PE NQ K L+ +P+K ++ NL
Sbjct: 384 DNVVDICWSP-------------TDSILSLFVPEQGGGNQPAKVALVQIPSKVELRQKNL 430
Query: 389 VQVSNVSIHWHEQADFVCFQVDRHTKSKKTFFTNLEICKLNESEIPVEKIEM---KDRVL 445
VS+ ++W +++ +VDR+TK+KK+ ++ E+ ++ E +IP+E +E+ D+++
Sbjct: 431 FSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKII 490
Query: 446 ELAWEPKGTRFVTISKMDNGGEENPMYPKNFVKFFAPEKKDNKDKDLAVLPDQLKWKLVK 505
AWEPKG RF I G++ P+ V F++ + N + +
Sbjct: 491 AFAWEPKGHRFAVIH-----GDQ----PRPDVSFYSMKTAQNTG----------RVSKLA 531
Query: 506 TVDQQFANCISWSPAGRFVAVCTIVNGKEIKKASLDFYDFDFTGEKTLNEVQDVKASLQA 565
T+ + AN + WSP G+++ I+ G + L+F++ D L+
Sbjct: 532 TLKAKQANALFWSPTGKYI----ILAGLKGFNGQLEFFNVD---------------ELET 572
Query: 566 VAHIDNQFFTDLEWDSSGRFLTAWSSYSKHKLENGYTIYNCCGEAVRKEIVDQFRNFVWR 625
+A ++ TD+EWD +GR++ A + S H++ENG+TI++ G + + + D F WR
Sbjct: 573 MATAEHFMATDIEWDPTGRYV-ATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWR 631
Query: 626 PRPESLLSNAEKKKARKNLKQWSVKFEEQDAMESDSALRDLILKRRAELSAWVSYREQSK 685
PRP S L+ ++++ K LK++S K+E +D S KR+A W + Q K
Sbjct: 632 PRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRKALKEEWEKWVMQWK 691
Query: 686 ERLESE 691
E E
Sbjct: 692 SLHEEE 697
>CE20310 [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 725
Score = 214 bits (546), Expect = 3e-55
Identities = 173/695 (24%), Positives = 316/695 (44%), Gaps = 102/695 (14%)
Query: 36 DNFLVVDGAPVAPEAKVPVLEKVLTKLFSQAGKVLDMQIPVE-DGKTKGHLFIEMESVSA 94
DN + + G PV ++ L+ VL K+ + + + IP +G G L E +
Sbjct: 45 DNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPEGGCLGVLLTEWADQRS 104
Query: 95 AKEAIQLFNGKKLDAKHRLLVNSLNDMEKYGSDDFESQSHEPVVPD---FAPTDFLRSWL 151
A+ A++ NG D H S DM++ E+ S P+ + L WL
Sbjct: 105 AQFAVKSLNGYAFDKNHTFTARSFKDMKQ-----LEAPSDHWTTPEKQAYNDVGDLWWWL 159
Query: 152 QNQDGRDQFVLQKGDM----TRVFWNRLAHQPDGVGEA----RKNWSNDVVKFSPKGTYL 203
QN+ RDQF + + VF N + P+ G+A R NW+ V +SP G+YL
Sbjct: 160 QNERCRDQFAISHDKLGVPTVGVFTNMKGNDPELAGDADKAERANWTETVFTWSPHGSYL 219
Query: 204 LSFHDQGVTSWGGPNFDRLKRFFHPDVSRLDVSPTEKFLITFSMNPIKPGEDTPFGPESE 263
+ H QG+ WGG ++ R RF H +V +D SP E +L+T++ P E +G + E
Sbjct: 220 STIHKQGIILWGGKDYARAHRFAHTNVQYIDFSPWETYLVTYA----APEESNSWG-DCE 274
Query: 264 GHQICVWDLATGFLMK---TFGIPPNAKL-QWPLIRFSYDDKYCGRLGP----------- 308
+ +WD+ TG L K TF + +L WP R+S+D+KY L
Sbjct: 275 KDSLRIWDVRTGELKKAFSTFELTGRTQLPTWPFFRWSFDEKYFACLKAPEKDKLEREQK 334
Query: 309 -NALAIYDIENNFQLLDGKLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWTPETNN 367
N ++I++ E F+L +G+ +E I+ F ++P +T+LAY++ T+
Sbjct: 335 INGISIFESE-KFELYEGRPVNIENIKQFEWSP-------------TSTVLAYYSECTDA 380
Query: 368 QSCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHEQADFVCFQVDRHTKSKKT--------- 418
+ L+ +P+ + +++ + V++ + W + + F R K +
Sbjct: 381 VPAEFGLLQVPSMQRLRSARVHNVADAQMFWQKSGKRLAFYTMRFKKKEYRETGEVKYVG 440
Query: 419 -FFTNLEICKLNESEIPVEKIEMKDRVLELAWEPKGTRFVTISKMDNGGEENPMYPKNFV 477
+++I ++++ ++ + + + + + W+P+G +F + + N + P K
Sbjct: 441 GCQYHVDIFEIDKKDVSLMNLPLSEPFIHFDWDPEGDKFCVL--VGNTAKATPQVYKIEA 498
Query: 478 KFFAPEKKDNKDKDLAVLPDQLKWKLVKTVDQ-QFANCISWSPAGRFVAVCTIVNGKEIK 536
AP KLV +D N + ++P G ++AV V+
Sbjct: 499 NSHAP-------------------KLVSKLDAGVHFNEVQFAPKGGWLAVLAKVSA---- 535
Query: 537 KASLDFYDFDFTGEKTLNEVQDVKASLQAVAHIDNQFFTDLEWDSSGR-FLTAWSSYSKH 595
++ F D + K N I++ F WD +GR F+T + +
Sbjct: 536 GGNVYFIDTSLSEAKRTNV-------------IEHPLFNKGYWDPTGRYFVTCSTLGGRA 582
Query: 596 KLENGYTIYNCCGEAVRKEIVDQFRNFVWRPRPESLLSNAEKKKARKNLKQWSVKFEEQD 655
+ GY I+ G + ++ +D+ F WRPRP LS ++++ +KNLK+ + KF +QD
Sbjct: 583 GADLGYRIFTFQGRELCRKNLDRLAQFKWRPRPPVKLSEQKQREIKKNLKKTAAKFIKQD 642
Query: 656 AMESDSALRDLILKRRAELSAWVSYREQSKERLES 690
E A ++++ KRR ++A+ R +++E+L++
Sbjct: 643 DDEKCRASQEVVEKRRKIMAAFDIIRSRNREQLDA 677
>At1g49010_2 [J] KOG2314 Translation initiation factor 3 subunit b (eIF-3b)
Length = 241
Score = 68.2 bits (165), Expect = 4e-11
Identities = 62/262 (23%), Positives = 114/262 (42%), Gaps = 53/262 (20%)
Query: 269 VWDLATGFLMKTFGIPPNA-KLQWPLIRFS--YDDKYCGRLGPNALAIYDIENNFQLLDG 325
++D+ TG +M G+ + WP+IR++ DDKY L I+N +G
Sbjct: 6 IFDVRTGRIMA--GVDGHVVDNSWPIIRWAGGKDDKYFATL---------IKNTTATQEG 54
Query: 326 KLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWTPETNNQSCKAFLMTLPNKRIVKT 385
+ + S++P ++P +L+ + NQ K + +P +
Sbjct: 55 AAVNFDDVVGMSWSP-----------TEP--ILSLLKGDVKNQPKKVVFLQIPGYVELMH 101
Query: 386 VNLVQVSNVSIHWHEQADFVCFQVDRHTKSKKTFFTNLEICKLNESE-IPVEKIEMKDRV 444
+++ VS+ ++W + ++ QV RHT S E+ + N+ + I E +E+ +++
Sbjct: 102 KDILSVSDCKMYWQSKGKYLAVQVTRHTCSL------FELFRFNKVQGITTEALEVDEKI 155
Query: 445 LELAWEPKGTRFVTISKMDNGGEENPMYPKNFVKFFAPEKKDNKDKDLAVLPDQLKWKLV 504
L AWEP G RF I +G + P V F++ E N K +
Sbjct: 156 LAFAWEPSGHRFAVI----HGDQSKPN-----VSFYSMETPQNPG----------KVSKL 196
Query: 505 KTVDQQFANCISWSPAGRFVAV 526
T D + A+ + WSP G+ + +
Sbjct: 197 ATFDDKEADALFWSPRGKHIVL 218
>At1g73180 [J] KOG2315 Predicted translation initiation factor related to
eIF-3a
Length = 513
Score = 67.8 bits (164), Expect = 6e-11
Identities = 102/493 (20%), Positives = 186/493 (37%), Gaps = 92/493 (18%)
Query: 195 KFSPKGTYLLSFHDQGVTS-WGGPNFDRLKRFFHPDVSRLDVSPTEKFLITFSMNPIKPG 253
KFS G+ L++ GV S + + ++ F +V+ ++SP +L TF P P
Sbjct: 43 KFSVDGSKLMAMKSDGVISIYDATSLTEVRSFTIANVTAAELSPCGTYLQTFQ-KPTTPQ 101
Query: 254 EDTPFGPESEGHQICVWDLATGFLMKTFGIPPNAKLQWPLIRFSYDDKYCGRLGPNALAI 313
E + +W+ TG L + K WP IRF D+ RL N +
Sbjct: 102 EKN----------VSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATNEVQF 151
Query: 314 YDIENNFQLLDGKLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWTPETNNQ----- 368
+D ++ + + ++ +V GI F + P + +A + PE+
Sbjct: 152 FDPKDFSKGITSRI-RVPGIAAFELS------------KTPASHVAVFVPESKGSPGSVQ 198
Query: 369 --SCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHEQAD----FVCFQVDRHTKS--KKTFF 420
C L + P+ R + + S+V W+ + V VD+ +S +T
Sbjct: 199 IFGCGEELQSQPSAR----RSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKL 254
Query: 421 TNLEICKLNESEIPVEKIEMKDRVLELAWEPKGTRFVTISKMDNGGEENPMYPKNFVKFF 480
L I +E +P+ K + V ++ W G+ F V F
Sbjct: 255 HYLTIDGTHEGLVPLRK---EGPVHDVQWSFSGSEFAV------------------VYGF 293
Query: 481 APEKKDNKDKDLAVLPDQLKWKLVKTVDQQFANCISWSPAGRFVAVCTIVNGKEIKKASL 540
P DK+ K + + + N + W+P GR + V N
Sbjct: 294 MPACVTIFDKNC---------KPLMELGEGPYNTLRWNPKGRVLCVAGFGN------LPG 338
Query: 541 DFYDFDFTGEKTLNEVQDVKASLQAVAHIDNQFFTDLEWDSSGRFLTAWSSYSKHKLENG 600
D +D +K L + ++ EW GR+ S+ + +++NG
Sbjct: 339 DMAFWDVVNKKQLGSNK-------------AEWSVTSEWSPDGRYFLTASTAPRRQIDNG 385
Query: 601 YTIYNCCGEAVRKEIVDQFRNFVWRPR-PESLLSNAEKKKARKNLKQWSVKFEEQDAMES 659
I+N G+ K++ ++ W+P PE +E K+ ++LK K + Q + +
Sbjct: 386 MKIFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQK 445
Query: 660 DSALRDLILKRRA 672
+ + I ++ A
Sbjct: 446 KTIAPNPIAQKPA 458
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,101,405
Number of Sequences: 60738
Number of extensions: 2222075
Number of successful extensions: 6153
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6069
Number of HSP's gapped (non-prelim): 12
length of query: 732
length of database: 30,389,216
effective HSP length: 114
effective length of query: 618
effective length of database: 23,465,084
effective search space: 14501421912
effective search space used: 14501421912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)