ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0978 suspect: LH A KOG1895 RNA processing and modification mRNA cleavage and polyadenylation factor II complex, subunit PTA1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0978 333513 331042 -824
(824 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YAL043c [A] KOG1895 mRNA cleavage and polyadenylation factor II ... 496 e-140
SPAC4H3.15c [A] KOG1895 mRNA cleavage and polyadenylation factor... 102 3e-21
>YAL043c [A] KOG1895 mRNA cleavage and polyadenylation factor II complex
subunit PTA1
Length = 785
Score = 496 bits (1277), Expect = e-140
Identities = 301/819 (36%), Positives = 473/819 (57%), Gaps = 84/819 (10%)
Query: 27 LPKVLETGITLFLN---DKRNLGFSRFSTQLLLDILVHDK-IPSSEKPFIVCQNITALWE 82
LPKVLET +++ N K L ++F TQL+LD++ D I ++E+PFI Q + L
Sbjct: 25 LPKVLETTASMYHNGNLSKLKLPLAKFFTQLVLDVVSMDSPIANTERPFIAAQYLPLLLA 84
Query: 83 MAE-TRDYVTYKNCILCLGNIYDRLFDLVAKTSDDKLWSVMLKFKELIIANWKTCYPLDL 141
MA+ T D + YKN +L + Y + DLVAKTS+ +++ + K+ ++++W+T YPL
Sbjct: 85 MAQSTADVLVYKNIVLIMCASYPLVLDLVAKTSNQEMFDQLCMLKKFVLSHWRTAYPLRA 144
Query: 142 SDND-------LNNHSRGTGVKLASVKLISKIIIVHTSGPG---ISVGSIPENHPVISNK 191
+ +D L + GVKLA++K IS++++ T P I+ +IP+NHPV+ NK
Sbjct: 145 TVDDETDVEQWLAQIDQNIGVKLATIKFISEVVLSQTKSPSGNEINSSTIPDNHPVL-NK 203
Query: 192 QALEAEAKYLLDKLLTFLIEEPMMCAPWFTGALHSLSFIMKQRPLATIRIASALLKFNID 251
ALE+EAK LLD LL +LIEE M + F G ++SLSF++K+RP TIRI S LL+FN+D
Sbjct: 204 PALESEAKRLLDMLLNYLIEEQYMVSSVFIGIINSLSFVIKRRPQTTIRILSGLLRFNVD 263
Query: 252 MKFQRDDEPTLQYRLAKRFVERCYRNLVQFGIKSQLLK---NSGSMTQYRNKLAKISQTL 308
KF + + L Y+L+KRFVER Y+N VQFG+K+Q++ +SGS + +KL KISQTL
Sbjct: 264 AKFPLEGKSDLNYKLSKRFVERAYKNFVQFGLKNQIITKSLSSGSGSSIYSKLTKISQTL 323
Query: 309 FVIGEETKAKGILNYDPAAIEHKMTPA--DKKKYTRVKEVNXXXXXXXXGTFSATTKSPS 366
VIGEETK+KGILN+DP+ K T + DK KY + + T +TK+P+
Sbjct: 324 HVIGEETKSKGILNFDPSKGNSKKTLSRQDKLKYISLWK---RQLSALLSTLGVSTKTPT 380
Query: 367 PIQMPPIVSPMIGNTMMNTASTPPLLNNFQPQIHAPVKNIXXXXXXXXDLSVLQSLQSYA 426
P+ +P G++ N L L+ LQ Y
Sbjct: 381 PVS-----APATGSSTENM------------------------------LDQLKILQKYT 405
Query: 427 FTKSTTKHPHFLNPAHTSVDNSYSAVFALMNPVTSGFDVSKLSQDTMVKICTEALSNTNT 486
K++ + F N + + N+YS+V++LMN S DV++L D ++K+ TEA+ ++
Sbjct: 406 LNKASHQGNTFFNNSPKPISNTYSSVYSLMNSSNSNQDVTQLPNDILIKLSTEAILQMDS 465
Query: 487 GTAINGLSIVASRYTDLINKWLQNNAQQQSATISNDSSPVPFNNSSQSQASKRPREENSA 546
I GLSIVASRYTDL+N ++ N+ S++ S N ++ + P +
Sbjct: 466 TKLITGLSIVASRYTDLMNTYI--NSVPSSSSSKRKSDDDDDGNDNEEVGNDGPTANSK- 522
Query: 547 ALPIKQEVAMKNEEPLQQPADDRYVIDDSAPIQPPESKRAKIERVEDAEPSSSHTVSLGV 606
IK E EEP + DDR +Q ES + E DA S+S +
Sbjct: 523 --KIKMETEPLAEEPEEPEDDDRM----QKMLQEEESAQ---EISGDANKSTSAIKEIAP 573
Query: 607 P----TLTYDEKLTHLQRIVQNILLIPTKTDVSTPMTQLQSTNPLDKVLLMNWDNKTSWV 662
P +LT DEKL +L ++ + + + + D + + S+ +L++ D+ +SW+
Sbjct: 574 PFEPDSLTQDEKLKYLSKLTKKLFELSGRQDTTRAKSSSSSS------ILLDDDDSSSWL 627
Query: 663 FLLSRLCSRGVSSNQDVRDIVTNAIFDYFCEDFQNRITLVLEWLSEEWYHEELISDGKDH 722
+L RL +RG+ + Q+ D++ + +F +DF+ R++L++EWL+EEW+ + + +D
Sbjct: 628 HVLIRLVTRGIEA-QEASDLIREELLGFFIQDFEQRVSLIIEWLNEEWFFQTSLH--QDP 684
Query: 723 TIYNEWSVKVLDFMIPKLDDSHRRLFIRMVSEMPLLTQEHIEKMKSLCLDPTRSVLGFQS 782
+ Y +WS++VL+ + P L++ HRR FIR++SE+P L +H+E +K +CLDP RS LGFQ+
Sbjct: 685 SNYKKWSLRVLESLGPFLENKHRRFFIRLMSELPSLQSDHLEALKPICLDPARSSLGFQT 744
Query: 783 LKFMLMFRPPVKPFIKVALESMAEVDESIKPQCDSLLNK 821
LKF++MFRPPV+ ++ L + + DE + QCDSLL++
Sbjct: 745 LKFLIMFRPPVQDTVRDLLHQLKQEDEGLHKQCDSLLDR 783
>SPAC4H3.15c [A] KOG1895 mRNA cleavage and polyadenylation factor II complex
subunit PTA1
Length = 260
Score = 102 bits (253), Expect = 3e-21
Identities = 72/256 (28%), Positives = 127/256 (49%), Gaps = 44/256 (17%)
Query: 573 DDSAPIQPPE--------SKRAKIERVEDAEPSSSHTVSLGVPT---LTYDEKLTHLQRI 621
D+ +PPE S + R+E + PS+ T + +PT L+ L +
Sbjct: 7 DEDEDYEPPEVDVQTINASVEREAARLEGSAPSNVVTDAFELPTPDSLSPMAILEYFHGA 66
Query: 622 VQNILLIPTKTDVSTPMTQLQSTNPLDKVLLMNWDN----KTSWVFLLSRLCSRGVSSNQ 677
+ + + + S + S++ L + L N DN K W LL RLC+RG+ + Q
Sbjct: 67 LSRLFDYAPQFERS-----IVSSSNLQNLTLENVDNTVWDKRHWAILLPRLCTRGLLNYQ 121
Query: 678 DVRD-------------IVTNAIFDYFCEDFQNRITLVLEWLSEEWYHEELISDGKD-HT 723
V V +F Y ++++ L+L WLSEEWY++ L+ + D H
Sbjct: 122 PVTSGEESGDASFTLSSFVRGQLFTYVASNWRSSTNLILNWLSEEWYNDRLMLENPDCHE 181
Query: 724 I---------YNEWSVKVLDFMIPKLDDSHRRLFIRMVSEMPLLTQEHIEKMKSLCLDPT 774
Y +W++KV+D ++P L+ + ++F+ +SE+P LT ++K+K +CLDP
Sbjct: 182 YEDVKWEGPQYEKWALKVIDSILPYLE-AKDKVFMIFMSELPELTDAIVDKIKFVCLDPD 240
Query: 775 RSVLGFQSLKFMLMFR 790
++ LGF + ++++MFR
Sbjct: 241 KTKLGFMTFQYLIMFR 256
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,802,555
Number of Sequences: 60738
Number of extensions: 1969596
Number of successful extensions: 6253
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6238
Number of HSP's gapped (non-prelim): 4
length of query: 824
length of database: 30,389,216
effective HSP length: 115
effective length of query: 709
effective length of database: 23,404,346
effective search space: 16593681314
effective search space used: 16593681314
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)