ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI0990 good U KOG2527 Intracellular trafficking, secretion, and vesicular transport Sorting nexin SNX11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI0990 334828 335319 164
(164 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR357c [U] KOG2527 Sorting nexin SNX11 193 8e-50
SPBC887.06c [U] KOG2527 Sorting nexin SNX11 119 2e-27
Hs4507143 [U] KOG2527 Sorting nexin SNX11 82 2e-16
CE16547 [U] KOG2527 Sorting nexin SNX11 78 5e-15
7299654 [U] KOG2527 Sorting nexin SNX11 78 5e-15
Hs7019541 [U] KOG2527 Sorting nexin SNX11 75 3e-14
>YOR357c [U] KOG2527 Sorting nexin SNX11
Length = 162
Score = 193 bits (491), Expect = 8e-50
Identities = 101/161 (62%), Positives = 114/161 (70%), Gaps = 2/161 (1%)
Query: 5 RQFQSFXXXXXXXXXXXXXKQLSGATIYDEPENFLEIEVCNPKTHFPSG-DAKGMYTDYE 63
R+F+SF + S + IY EPENFLEIEV NPKTH P+G D+KGM+TDYE
Sbjct: 3 REFKSFGSTEKSLLSKGHGEP-SYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYE 61
Query: 64 IICRTNLPGFXXXXXXXXXXXXDFELFRKLLIKELQLSNHPKVSVQHLPGKILLSNRFSD 123
IICRTNLP F DFE FRK LIKE+ + NHPKV V HLPGKILLSNRFS+
Sbjct: 62 IICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSN 121
Query: 124 AVIEERRQGLNKWLASVAGHPLLQTGSKVLVRFIQDPTFQG 164
VIEERRQGLN W+ SVAGHPLLQ+GSKVLVRFI+ F G
Sbjct: 122 EVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFVG 162
>SPBC887.06c [U] KOG2527 Sorting nexin SNX11
Length = 143
Score = 119 bits (298), Expect = 2e-27
Identities = 66/140 (47%), Positives = 86/140 (61%), Gaps = 9/140 (6%)
Query: 24 KQLSGATIYDEPENFLEIEVCNPKTHFPSGDAKGMYTDYEIICRTNLPGFXXXXXXXXXX 83
+Q + +YD PEN LEI+V NP+TH G + M+T YEI+CRTN+P F
Sbjct: 10 RQQTTQQMYDVPENILEIDVINPQTH---GIGRNMFTTYEIVCRTNMPYFRLHNSSVRRR 66
Query: 84 XXDFELFRKLLIKELQLSNHPKVSVQHLPGKILLSNRFSDAVIEERRQGLNKWLASVAGH 143
+FE F +L +E +VS+ LPGKI + RF D VIEERRQGL +L VAGH
Sbjct: 67 YSEFEKFHDMLERE-----SGRVSIPPLPGKIF-TQRFRDDVIEERRQGLENFLRLVAGH 120
Query: 144 PLLQTGSKVLVRFIQDPTFQ 163
PL+QT S+VL F+Q P F+
Sbjct: 121 PLIQTHSRVLSSFLQSPEFK 140
>Hs4507143 [U] KOG2527 Sorting nexin SNX11
Length = 162
Score = 82.4 bits (202), Expect = 2e-16
Identities = 55/136 (40%), Positives = 67/136 (48%), Gaps = 18/136 (13%)
Query: 32 YDEPENFLEIEVCNPKTHFPSGDAKGMYTDYEIICRTNLPGFXXXXXXXXXXXXDFELFR 91
Y P NFLEI+V NP+T G +G +T YEI +TNLP F DFE R
Sbjct: 22 YGPPSNFLEIDVSNPQT---VGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLR 78
Query: 92 KLLIKELQLSNHPKVSVQHLPGKILLSNR--------FSDAVIEERRQGLNKWLASVAGH 143
+L KV V LPGK L F D IEER+QGL +++ VAGH
Sbjct: 79 S------ELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGH 132
Query: 144 PLLQTGSKVLVRFIQD 159
PL Q + L F+QD
Sbjct: 133 PLAQ-NERCLHMFLQD 147
>CE16547 [U] KOG2527 Sorting nexin SNX11
Length = 162
Score = 78.2 bits (191), Expect = 5e-15
Identities = 57/138 (41%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 32 YDEPENFLEIEVCNPKTHFPSGDAKGMYTDYEIICRTNLPGFXXXXXXXXXXXXDFELFR 91
Y P NFLEIEV NP TH G K YTDYEI R+NLP F DFE R
Sbjct: 22 YAPPANFLEIEVINPITH---GVGKMRYTDYEIRMRSNLPVFKQKESSVRRRYSDFEWVR 78
Query: 92 KLLIKELQLSNHPKVSVQHLPGKIL---LSNRFSDAVIEE-----RRQGLNKWLASVAGH 143
+L K+ V LPGK L R D + EE RR+ L ++ VAGH
Sbjct: 79 ------AELERDSKIVVPTLPGKSFKRQLPFRSDDGIFEEEFIENRRKALELFINKVAGH 132
Query: 144 PLLQTGSKVLVRFIQDPT 161
PL Q + L F+Q+PT
Sbjct: 133 PLAQ-NERSLHIFLQEPT 149
>7299654 [U] KOG2527 Sorting nexin SNX11
Length = 167
Score = 78.2 bits (191), Expect = 5e-15
Identities = 52/136 (38%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 32 YDEPENFLEIEVCNPKTHFPSGDAKGMYTDYEIICRTNLPGFXXXXXXXXXXXXDFELFR 91
Y P NFLEI+V NP T +G K YTDYE+ RTNLP F DFE R
Sbjct: 26 YAVPANFLEIDVVNPLTTMAAG--KKRYTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLR 83
Query: 92 KLLIKELQLSNHPKVSVQHLPGKILLSNR--------FSDAVIEERRQGLNKWLASVAGH 143
+L K+ V LPGK F ++ IEERR+GL ++ +AGH
Sbjct: 84 N------ELERDSKIVVPPLPGKAWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGH 137
Query: 144 PLLQTGSKVLVRFIQD 159
PL Q + L F+Q+
Sbjct: 138 PLAQ-NERCLHMFLQE 152
>Hs7019541 [U] KOG2527 Sorting nexin SNX11
Length = 162
Score = 75.5 bits (184), Expect = 3e-14
Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 32 YDEPENFLEIEVCNPKTHFPSGDAKGMYTDYEIICRTNLPGFXXXXXXXXXXXXDFELFR 91
Y P NFLEI++ NP+T G + +T YE+ RTNLP F DFE +
Sbjct: 23 YGPPSNFLEIDIFNPQT---VGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLK 79
Query: 92 KLLIKELQLSNHPKVSVQHLPGKILLSNR--------FSDAVIEERRQGLNKWLASVAGH 143
+L K+ V LPGK L F ++ IEERRQGL +++ +AGH
Sbjct: 80 N------ELERDSKIVVPPLPGKALKRKLPFRGDEGIFEESFIEERRQGLEQFINKIAGH 133
Query: 144 PLLQTGSKVLVRFIQD 159
PL Q + L F+Q+
Sbjct: 134 PLAQ-NERCLHMFLQE 148
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.140 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,722,735
Number of Sequences: 60738
Number of extensions: 299799
Number of successful extensions: 664
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 6
length of query: 164
length of database: 30,389,216
effective HSP length: 98
effective length of query: 66
effective length of database: 24,436,892
effective search space: 1612834872
effective search space used: 1612834872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)