ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI1001.1    suspect: LH  R     KOG1824   General function prediction only                               TATA-binding protein-interacting protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI1001.1 338139 337894 -82  
         (82 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

7297672 [R] KOG1824 TATA-binding protein-interacting protein           28   2.9  
Hs22040856 [U] KOG0864 Ran-binding protein RANBP1 and related Ra...    26   8.5  

>7297672 [R] KOG1824 TATA-binding protein-interacting protein
          Length = 1248

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 12/31 (38%), Positives = 16/31 (50%)

Query: 49  PSGIEPLIPALLARCLNQLGQGTNLDVEEED 79
           P  I P IP +L  CLN +    N + E +D
Sbjct: 285 PDAINPHIPMILELCLNYITYDPNYNYETDD 315


>Hs22040856 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
           proteins
          Length = 738

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 8/31 (25%), Positives = 20/31 (63%)

Query: 51  GIEPLIPALLARCLNQLGQGTNLDVEEEDCV 81
           G++P +    A+CL ++G+G N   ++++ +
Sbjct: 404 GLQPALLVHWAKCLQKMGRGLNSSYDQQEYI 434


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,666,122
Number of Sequences: 60738
Number of extensions: 81715
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 2
length of query: 82
length of database: 30,389,216
effective HSP length: 58
effective length of query: 24
effective length of database: 26,866,412
effective search space: 644793888
effective search space used: 644793888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)