ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1023 good U KOG0860 Intracellular trafficking, secretion, and vesicular transport Synaptobrevin/VAMP-like protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1023 344874 345095 74
(74 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR327c [U] KOG0860 Synaptobrevin/VAMP-like protein 117 3e-27
YAL030w [U] KOG0860 Synaptobrevin/VAMP-like protein 112 7e-26
SPAC6G9.11 [U] KOG0860 Synaptobrevin/VAMP-like protein 99 1e-21
Hs14736500 [U] KOG0860 Synaptobrevin/VAMP-like protein 57 3e-09
Hs4507863 [U] KOG0860 Synaptobrevin/VAMP-like protein 56 8e-09
Hs7657675 [U] KOG0860 Synaptobrevin/VAMP-like protein 52 1e-07
At3g54300 [U] KOG0859 Synaptobrevin/VAMP-like protein 51 3e-07
At2g32670 [U] KOG0859 Synaptobrevin/VAMP-like protein 51 3e-07
Hs4759300 [U] KOG0860 Synaptobrevin/VAMP-like protein 50 6e-07
At2g33120 [U] KOG0859 Synaptobrevin/VAMP-like protein 50 7e-07
CE18252 [U] KOG0860 Synaptobrevin/VAMP-like protein 49 1e-06
At5g11150 [U] KOG0859 Synaptobrevin/VAMP-like protein 49 1e-06
Hs9257251 [U] KOG0860 Synaptobrevin/VAMP-like protein 49 2e-06
Hs7657673 [U] KOG0860 Synaptobrevin/VAMP-like protein 49 2e-06
At1g04750 [U] KOG0859 Synaptobrevin/VAMP-like protein 49 2e-06
At1g04760 [U] KOG0859 Synaptobrevin/VAMP-like protein 48 3e-06
7303772 [U] KOG0860 Synaptobrevin/VAMP-like protein 47 4e-06
At4g32150 [U] KOG0859 Synaptobrevin/VAMP-like protein 47 6e-06
>YOR327c [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 115
Score = 117 bits (293), Expect = 3e-27
Identities = 57/74 (77%), Positives = 59/74 (79%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRMCXXXXXXX 60
MRDNINKVAERGERLTSI+DKADNLA+SAQGFKRGANRVRKQMWWKDLKMRMC
Sbjct: 42 MRDNINKVAERGERLTSIEDKADNLAISAQGFKRGANRVRKQMWWKDLKMRMCLFLVVII 101
Query: 61 XXXXXXXPIAVHFS 74
PI VHFS
Sbjct: 102 LLVVIIVPIVVHFS 115
>YAL030w [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 117
Score = 112 bits (281), Expect = 7e-26
Identities = 56/74 (75%), Positives = 59/74 (79%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRMCXXXXXXX 60
MRDNINKVAERGERLTSI+DKADNLAVSAQGFKRGANRVRK MW+KDLKM+MC
Sbjct: 43 MRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMWYKDLKMKMCLALVIII 102
Query: 61 XXXXXXXPIAVHFS 74
PIAVHFS
Sbjct: 103 LLVVIIVPIAVHFS 116
>SPAC6G9.11 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 121
Score = 99.0 bits (245), Expect = 1e-21
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRMCXXXXXXX 60
MR+NI+KV+ERGERL S+QDK DNLAVSAQGF+RGANRVRK+MWWKD++MR+C
Sbjct: 46 MRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWWKDMRMRLCIIIGIII 105
Query: 61 XXXXXXXPIAVHF 73
PIA F
Sbjct: 106 LLVVIIVPIATKF 118
>Hs14736500 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 140
Score = 57.4 bits (137), Expect = 3e-09
Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMR 51
M++NI KV ERGERL +QDK+++L+ +A F + ++R+QMWW+ K++
Sbjct: 66 MQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 116
>Hs4507863 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 141
Score = 56.2 bits (134), Expect = 8e-09
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMR 51
M +NI KV ERGERL +QDK+++L+ +A F + ++R+QMWW+ K++
Sbjct: 67 MPENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 117
>Hs7657675 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 116
Score = 52.0 bits (123), Expect = 1e-07
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
MR N++KV ER ++L+ + D+AD L A F+ A +++++ WWK+LKM
Sbjct: 46 MRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95
>At3g54300 [U] KOG0859 Synaptobrevin/VAMP-like protein
Length = 240
Score = 51.2 bits (121), Expect = 3e-07
Identities = 21/52 (40%), Positives = 35/52 (66%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRM 52
M DNI KV +RGE++ + DK +NL A F+R ++R++MW + L+M++
Sbjct: 164 MMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKL 215
>At2g32670 [U] KOG0859 Synaptobrevin/VAMP-like protein
Length = 220
Score = 50.8 bits (120), Expect = 3e-07
Identities = 19/52 (36%), Positives = 37/52 (70%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRM 52
M +NI KV +RGE++ + DK +NL AQ F+ ++R++MW++++K+++
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKL 196
>Hs4759300 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 100
Score = 50.1 bits (118), Expect = 6e-07
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
MR N++KV ER ++L+ + D+AD L A F+ A +++++ WWK+ KM
Sbjct: 29 MRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 78
>At2g33120 [U] KOG0859 Synaptobrevin/VAMP-like protein
Length = 221
Score = 49.7 bits (117), Expect = 7e-07
Identities = 19/52 (36%), Positives = 37/52 (70%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRM 52
M +NI KV +RGE++ + DK +NL AQ F+ ++R++MW++++K+++
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKL 196
>CE18252 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 109
Score = 48.9 bits (115), Expect = 1e-06
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
M+ N+ KV ER ++L+ + D+AD L A F++ A ++++ WWK++KM
Sbjct: 38 MKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKM 87
>At5g11150 [U] KOG0859 Synaptobrevin/VAMP-like protein
Length = 221
Score = 48.9 bits (115), Expect = 1e-06
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
M +NI+KV +RGERL + DK +N+ + F++ A R R MWW+++K+
Sbjct: 142 MIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKL 191
>Hs9257251 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 116
Score = 48.5 bits (114), Expect = 2e-06
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
+R N++KV ER ++L+ + D+AD L A F+ A +++++ WWK+ KM
Sbjct: 48 IRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKM 97
>Hs7657673 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 118
Score = 48.5 bits (114), Expect = 2e-06
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
+R N++KV ER ++L+ + D+AD L A F+ A +++++ WWK+ KM
Sbjct: 48 IRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKM 97
>At1g04750 [U] KOG0859 Synaptobrevin/VAMP-like protein
Length = 219
Score = 48.5 bits (114), Expect = 2e-06
Identities = 19/52 (36%), Positives = 36/52 (68%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRM 52
M +NI KV +RGE++ + DK +NL AQ F+ ++R++MW +++K+++
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKL 196
>At1g04760 [U] KOG0859 Synaptobrevin/VAMP-like protein
Length = 220
Score = 47.8 bits (112), Expect = 3e-06
Identities = 17/52 (32%), Positives = 37/52 (70%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRM 52
M +NI KV +RGE++ + DK +NL AQ F+ ++++++W++++K+++
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKL 196
>7303772 [U] KOG0860 Synaptobrevin/VAMP-like protein
Length = 129
Score = 47.4 bits (111), Expect = 4e-06
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
MR N+ KV ER ++L+ + ++AD L A F++ A +++++ WW ++KM
Sbjct: 39 MRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKM 88
>At4g32150 [U] KOG0859 Synaptobrevin/VAMP-like protein
Length = 219
Score = 46.6 bits (109), Expect = 6e-06
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 1 MRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMWWKDLKM 50
M +NI+KV +RGERL + DK N+ + F++ A R R +WW++ K+
Sbjct: 141 MIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKL 190
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,925,216
Number of Sequences: 60738
Number of extensions: 72170
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 18
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 18
length of query: 74
length of database: 30,389,216
effective HSP length: 50
effective length of query: 24
effective length of database: 27,352,316
effective search space: 656455584
effective search space used: 656455584
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)