ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1047 suspect: Pn TZ KOG1923 Cytoskeleton Rac1 GTPase effector FRL
r_klactI1047 suspect: Pn TZ KOG1923 Signal transduction mechanisms Rac1 GTPase effector FRL
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1047 Weakly similar to YAL027w SP|P39735 hypothetical
protein singleton
(320 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
CE00238 [TZ] KOG1923 Rac1 GTPase effector FRL 36 0.085
CE26916 [AK] KOG0132 RNA polymerase II C-terminal domain-binding... 33 0.55
At3g02950 [S] KOG3215 Uncharacterized conserved protein 32 0.94
CE05429 [TBLD] KOG0889 Histone acetyltransferase SAGA TRRAP/TRA1... 32 1.6
At3g06670 [G] KOG2175 Protein predicted to be involved in carboh... 31 2.1
Hs6912686 [D] KOG2011 Sister chromatid cohesion complex Cohesin ... 31 2.7
Hs11225260 [L] KOG0981 DNA topoisomerase I 31 2.7
SPBC336.03 [T] KOG3417 Ras1 guanine nucleotide exchange factor 30 3.6
Hs4759146 [WT] KOG4237 Extracellular matrix protein slit contain... 30 3.6
7301710 [T] KOG1998 Signaling protein DOCK180 30 3.6
At5g49940_1 [O] KOG2358 NifU-like domain-containing proteins 30 3.6
Hs22061900 [PT] KOG3676 Ca2+-permeable cation channel OSM-9 and ... 30 4.7
CE02270 [R] KOG2484 GTPase 30 4.7
Hs6382079_1 [U] KOG0864 Ran-binding protein RANBP1 and related R... 30 4.7
Hs22040856 [U] KOG0864 Ran-binding protein RANBP1 and related Ra... 30 6.1
Hs19718755 [U] KOG0864 Ran-binding protein RANBP1 and related Ra... 30 6.1
Hs17462242 [A] KOG2600 U3 small nucleolar ribonucleoprotein (sno... 30 6.1
Hs14149991 [U] KOG0864 Ran-binding protein RANBP1 and related Ra... 30 6.1
Hs13699863 [PT] KOG3676 Ca2+-permeable cation channel OSM-9 and ... 30 6.1
7292032 [T] KOG3775 Mitogen-activated protein kinase scaffold pr... 30 6.1
YHR052w [S] KOG1685 Uncharacterized conserved protein 29 8.0
Hs7662018 [K] KOG1634 Predicted transcription factor DATF1 conta... 29 8.0
Hs14149875 [B] KOG2747 Histone acetyltransferase (MYST family) 29 8.0
7303176 [A] KOG1896 mRNA cleavage and polyadenylation factor II ... 29 8.0
7294602 [J] KOG4772 Predicted tRNA-splicing endonuclease subunit 29 8.0
>CE00238 [TZ] KOG1923 Rac1 GTPase effector FRL
Length = 732
Score = 35.8 bits (81), Expect = 0.085
Identities = 36/146 (24%), Positives = 69/146 (46%), Gaps = 17/146 (11%)
Query: 84 TPAIRLHLSNEDMKFLLNEIRDSLLFMLYELCSPI--LEEKVLNKLKIDTFMDFADV--- 138
T A + + ++DM+ ++ E+R + L+E+ I ++ KVLN+ +D+ + A
Sbjct: 418 TKAFQSFVLSDDMRTVVEEVRSRVSIQLFEVMFAIHRMDIKVLNQNLVDSLLQIAPTNSD 477
Query: 139 LEILKKGSSLETRSTDVYNPIDGIDVHITSIERTGKKSYKLHFSHNWRLDILIENIDK-- 196
++L+K +L + + + ID HI T K Y+ ++++L ENI K
Sbjct: 478 AQLLRKMENLSDPNEEFLLGLTKID-HIEEKLETMKHMYRF----PEQVELLKENIIKYE 532
Query: 197 -----LHHWRKLLTLLDSVQSVSNTG 217
L R L ++ V ++ N G
Sbjct: 533 IAVKVLSESRALRNVMQLVLAILNIG 558
>CE26916 [AK] KOG0132 RNA polymerase II C-terminal domain-binding protein
RA4 contains RPR and RRM domains
Length = 988
Score = 33.1 bits (74), Expect = 0.55
Identities = 45/239 (18%), Positives = 88/239 (35%), Gaps = 50/239 (20%)
Query: 57 KVLKSITNS-DTIFEAPILSNNSIIRLKTPAIRLHLSNEDMKFLLNEIRDSLLFMLYELC 115
+V+KS N ++F++ +S N I + AI+ + + F +
Sbjct: 4 EVMKSFNNELSSLFDSKNMSKNKIQDITKAAIKAKSQYKHVVFSV--------------- 48
Query: 116 SPILEEKVLNKLKIDTFMDFADVLEILKKGSSLETRSTDVYNP--IDGIDVHITSIERTG 173
EK++NK K D ++ V++ + + S + + D + P + D + + + G
Sbjct: 49 -----EKLINKCKPDQRLNVLYVIDSIVRASKHQLKEKDTFGPRFMKQFDKFLMPLLKCG 103
Query: 174 KKSYKLHFSHNWRLDILIENIDKLHHWRKLLTLLDS-VQSVSNTGQSIPLFIPFKSTNVL 232
+K + + L+ W +S +Q + ++ L I F+ +
Sbjct: 104 QKE-------------KMRTVRTLNLWMSNKVFKESEIQPLREMCKASGLTIDFEEVELA 150
Query: 233 VR-------------SIKPLESDTNSSKSEDPPILIEPEDDGLGQVPRDEIEMVDQDPN 278
V+ KP S ++S P P+D LG P + V PN
Sbjct: 151 VKGKQADMSIYSGVYKKKPKRSSSSSQPKSRTPTNPHPDDGLLGAGPSSALRSVPDIPN 209
>At3g02950 [S] KOG3215 Uncharacterized conserved protein
Length = 236
Score = 32.3 bits (72), Expect = 0.94
Identities = 40/203 (19%), Positives = 82/203 (39%), Gaps = 37/203 (18%)
Query: 21 LQEETSVTNYNDCNRSALIQINSKCVLSVRVFINRNKVLKSITNSDTIFEAPILSNNSII 80
L+ + NYNDC R A K+ + FE P+L + +++
Sbjct: 61 LEVDKEEENYNDCGRLA----------------------KAFLQELSTFEIPLLKSQAVV 98
Query: 81 RLKTPAIRLHLSNEDMKFLLNEIRDSLLFMLYELCSPILE-EKVLNKLKIDTFMDFADVL 139
+N K NE++D + + + I + +K L + KID +
Sbjct: 99 E----------ANLREKESFNEVKDETERQIMQAKAEIEDLKKQLEESKID--RQHKEEC 146
Query: 140 EILKKGSSLETRSTDVYNPIDGIDVHITSIERTGKKSYKLHFSHNWRLDILIENIDKLHH 199
E ++K S + ++ I ++ I +E S++L + +L+ +D+L +
Sbjct: 147 ETIRKLISAQPPRSETEKVIYELNKEIAELEAESTASWRLLELRKKQFALLMHVVDELQN 206
Query: 200 WR--KLLTLLDSVQSVSNTGQSI 220
+ +L+D ++S S ++I
Sbjct: 207 TMEDEQKSLVDEIRSASEDQRNI 229
>CE05429 [TBLD] KOG0889 Histone acetyltransferase SAGA TRRAP/TRA1 component
PI-3 kinase superfamily
Length = 3944
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 232 LVRSIKPLESDTNSSKSEDPPILIEPEDDGLGQVPRDEIEMVDQDPNDIKLDTKDDKKP 290
++R+I +D N+ + +D P+ +E E + R+E E ++ D D + D+KD +P
Sbjct: 2521 MLRTIAKRPTDPNNKRKKDQPMEVETE------MKREEPEPMEVDEKDSQDDSKDAGEP 2573
>At3g06670 [G] KOG2175 Protein predicted to be involved in carbohydrate
metabolism
Length = 863
Score = 31.2 bits (69), Expect = 2.1
Identities = 48/240 (20%), Positives = 101/240 (42%), Gaps = 32/240 (13%)
Query: 39 IQINSKCVLSVRVFINRNKVLKSITNSDTIFEAPILSNNSIIRLKTPAIRLHLSNEDMKF 98
I I VLS R LK + + + +A + + NS+I AI + L +D F
Sbjct: 260 IPIKDPLVLSKIHQTYRIGYLKDVVLARVLDDAIVANLNSVIHANN-AIVVSLLKDDSTF 318
Query: 99 LLN------------EIRDSLLFMLYELCSPILEEKVLNKLKIDTFMDFADVLEILKKGS 146
+ E + +L++ L+E CS +V+ +L++ + + ++++
Sbjct: 319 IQELFARLRSPSTSMESKKNLVYFLHEFCSLSKSLQVVQQLRLFRDLINEGIFHVIEEVL 378
Query: 147 SLETRSTDVYNPIDGIDVHITSIERTGK--KSYKLHFSHNWRLDILIENI-----DKLH- 198
+ + + G D+ I + + +SY + N L +L++ + DK+H
Sbjct: 379 QIPDKKL----VLTGTDILILFLTQDPNLLRSYVVRTEGNPLLGLLVKGMMEDFGDKMHC 434
Query: 199 HWRKLLTLLDSVQSVSNTGQSIPLFIPFKSTNVLVRSIKPLESDTNSSKSEDPPILIEPE 258
+ +++ L ++S Q +P + +V+ S E +N+S+ I +PE
Sbjct: 435 QFLEIIRTLLDANALSGGAQHLPELV-----DVITASCP--EKSSNASEGAARRIFTKPE 487
>Hs6912686 [D] KOG2011 Sister chromatid cohesion complex Cohesin subunit
STAG/IRR1/SCC3
Length = 1225
Score = 30.8 bits (68), Expect = 2.7
Identities = 15/52 (28%), Positives = 23/52 (43%)
Query: 198 HHWRKLLTLLDSVQSVSNTGQSIPLFIPFKSTNVLVRSIKPLESDTNSSKSE 249
H W + T S+ V NT ++ P +P + KP D +SS+ E
Sbjct: 1044 HPWGPVTTYCHSLSPVENTAETSPQVLPSSKRKRVEGPAKPNREDVSSSQEE 1095
>Hs11225260 [L] KOG0981 DNA topoisomerase I
Length = 765
Score = 30.8 bits (68), Expect = 2.7
Identities = 19/58 (32%), Positives = 31/58 (52%), Gaps = 7/58 (12%)
Query: 239 LESDTNSSKSEDPPILIEPEDDGLGQVPRDEIEMV----DQDPNDI---KLDTKDDKK 289
++ + + S P I EPEDDG P+++I+ + D+D D K+ T+D KK
Sbjct: 102 IKKEKENGFSSPPQIKDEPEDDGYFVPPKEDIKPLKRPRDEDDADYKPKKIKTEDTKK 159
>SPBC336.03 [T] KOG3417 Ras1 guanine nucleotide exchange factor
Length = 987
Score = 30.4 bits (67), Expect = 3.6
Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 5/72 (6%)
Query: 100 LNEIRDSLLFMLYELCSPILEEKVLNKLK-----IDTFMDFADVLEILKKGSSLETRSTD 154
L+ + + L E C P L++ V LK I+ F DFAD + + S++ + S
Sbjct: 360 LSAVSSAYRTRLLEPCLPELDKCVWFLLKNCDEFIENFSDFADEEYVFEICSTITSHSEQ 419
Query: 155 VYNPIDGIDVHI 166
++N ++ D+ I
Sbjct: 420 IFNKLESWDMSI 431
>Hs4759146 [WT] KOG4237 Extracellular matrix protein slit contains
leucine-rich and EGF-like repeats
Length = 1529
Score = 30.4 bits (67), Expect = 3.6
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 25 TSVTNYNDCNRSALIQINS---KCVLSVRVFINRNKVL--------KSITNSDTIFEAPI 73
T N DC L +I + + + +R+ N KV+ K + D
Sbjct: 278 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRID------- 330
Query: 74 LSNNSIIRLKTPAIRLHLSNEDMKFLLNEIRD---SLLFMLYELCSPILEEKVLNKLKID 130
LSNN I L A + S + N+I + SL L+ L +L +N L++D
Sbjct: 331 LSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 390
Query: 131 TFMDFADVLEILKKGSSLETRSTDVYNPIDGI 162
F D ++ + + L+T + ++P+ I
Sbjct: 391 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 422
>7301710 [T] KOG1998 Signaling protein DOCK180
Length = 2015
Score = 30.4 bits (67), Expect = 3.6
Identities = 24/84 (28%), Positives = 38/84 (44%), Gaps = 1/84 (1%)
Query: 75 SNNSIIRLKTPAIRLHLSNEDMKFLLNEIRDSLLFMLYELCSPILEEKVLNKLKIDTFMD 134
S ++ + +R+HLS D L EI +L LY+L EKV N L+ D
Sbjct: 706 SRTVVLSVACKHLRMHLSRRDELRLCAEILSEILSQLYDL-QKEQREKVTNTLQHDLDSL 764
Query: 135 FADVLEILKKGSSLETRSTDVYNP 158
++L IL + S+ ++ P
Sbjct: 765 CKNILGILIRTISIIMEGSNAVLP 788
>At5g49940_1 [O] KOG2358 NifU-like domain-containing proteins
Length = 215
Score = 30.4 bits (67), Expect = 3.6
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Query: 47 LSVRVFINRNKVLKSITNSDTIFEAPILSNNSIIRLKTPAIRLHLSNEDMKFLLNEIRDS 106
LS R R+KV+K++ D I E P+ N + IR +L ++ L+EI +
Sbjct: 59 LSSRQLFRRSKVVKAVATPDPILEVPLTEEN--VESVLDEIRPYLMSDGGNVALHEIDGN 116
Query: 107 LL 108
++
Sbjct: 117 IV 118
>Hs22061900 [PT] KOG3676 Ca2+-permeable cation channel OSM-9 and related
channels (OTRPC family)
Length = 871
Score = 30.0 bits (66), Expect = 4.7
Identities = 28/106 (26%), Positives = 49/106 (45%), Gaps = 18/106 (16%)
Query: 50 RVFINRNKVLKSITNSDTIFEAPILSNNSIIRLKTPAIRLHLSNEDMKFLLNEIRD---- 105
R+F + N L+++ N+D + + + I + IR +++ED + L + +D
Sbjct: 355 RLFPDSN--LEAVLNNDGLSPLMMAAKTGKIGIFQHIIRREVTDEDTRHLSRKFKDWAYG 412
Query: 106 SLLFMLYELCSPILEEKVLNKLKIDTFMDFADVLEILKKGSSLETR 151
+ LY+L S +DT + A VLEIL S +E R
Sbjct: 413 PVYSSLYDLSS------------LDTCGEEASVLEILVYNSKIENR 446
>CE02270 [R] KOG2484 GTPase
Length = 556
Score = 30.0 bits (66), Expect = 4.7
Identities = 23/84 (27%), Positives = 37/84 (43%), Gaps = 6/84 (7%)
Query: 238 PLESDTNSSKSEDPPILIEPEDDGLGQVPRDEIEMVDQDPNDIKLDTKDDKKPIF--DYQ 295
P+ESD + + D E +DD + +E + +K TKDD KP+
Sbjct: 454 PMESDIIAPHNSDE----EEDDDDEMETDVNEKKQTVTSGRKVKGPTKDDDKPVLPESLA 509
Query: 296 YKGMRLFDKCIKIHVLGRPKRGKK 319
+G +K IK + + K+ KK
Sbjct: 510 LEGNVQLNKLIKTAIKKQKKKSKK 533
>Hs6382079_1 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 3065
Score = 30.0 bits (66), Expect = 4.7
Identities = 15/49 (30%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 197 LHHWRKLLTLLDSVQSVSNTGQSI-PLFIPFKSTNVLVRSIKPLESDTN 244
+H+W+K+L LL ++ ++ + I PLF F S ++ I E D +
Sbjct: 603 VHYWKKVLPLLKIIKKKNSIPEPIDPLFKHFHSVDIQASEIVEYEEDAH 651
>Hs22040856 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 738
Score = 29.6 bits (65), Expect = 6.1
Identities = 15/48 (31%), Positives = 24/48 (49%)
Query: 197 LHHWRKLLTLLDSVQSVSNTGQSIPLFIPFKSTNVLVRSIKPLESDTN 244
+H+W+K+L LL ++ S PLF F S ++ I E D +
Sbjct: 438 VHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQASEIVEYEEDAH 485
>Hs19718755 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 1765
Score = 29.6 bits (65), Expect = 6.1
Identities = 15/48 (31%), Positives = 24/48 (49%)
Query: 197 LHHWRKLLTLLDSVQSVSNTGQSIPLFIPFKSTNVLVRSIKPLESDTN 244
+H+W+K+L LL ++ S PLF F S ++ I E D +
Sbjct: 604 VHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQASEIVEYEEDAH 651
>Hs17462242 [A] KOG2600 U3 small nucleolar ribonucleoprotein (snoRNP) subunit -
Mpp10p
Length = 681
Score = 29.6 bits (65), Expect = 6.1
Identities = 61/311 (19%), Positives = 118/311 (37%), Gaps = 40/311 (12%)
Query: 19 KCLQEETSVTNYNDCNRSALIQINSKCVLSVRVFINRNKVLKS------------ITNSD 66
+CL E T +C + + SK +V + NK+L++ I N D
Sbjct: 13 RCLTEVGKATGRPECFLTIQEGLASKFTSLTKVLYDFNKILENGRIHGSPLQKLVIENFD 72
Query: 67 T--IFEAPILSNNSIIRLKTPAIRLHLSNEDMKFLLNEIRDSLLFMLYELCSPILE--EK 122
I++ L N I++ A+ +++ED+ L E+ + E E
Sbjct: 73 DEQIWQQLELQNEPILQYFQNAVSETINDEDISLLPESEEQEREEDGSEIEADDKEDLED 132
Query: 123 VLNKLKIDTFMDFADVLEILKKGSSLETRSTDVYNPIDG-IDVHITSIERTGKKSYKLH- 180
+ + D D ++ E + S + R + V++ D +D I+ +E+ K K
Sbjct: 133 LEEEEVSDMGNDDPEMGERAENSSKSDLRKSPVFSDEDSDLDFDISKLEQQSKVQNKGQG 192
Query: 181 -----------FSHNWRLDILIENIDKLHHWRK----------LLTLLDSVQSVSNTGQS 219
F ++ +ENI+K + +DS + S
Sbjct: 193 KPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEEEEDIDFFEDIDSDEDEGGLFGS 252
Query: 220 IPLFIPFKSTNVLVRSI-KPLESDTNSSKSEDPPILIEPEDDGLGQVPRDEIEMVDQDPN 278
L S N+ + P+ESD + + D + EDD + + +E+ + + D +
Sbjct: 253 KKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEEAEELSISETDED 312
Query: 279 DIKLDTKDDKK 289
D + +D+K+
Sbjct: 313 DDLQENEDNKQ 323
>Hs14149991 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 904
Score = 29.6 bits (65), Expect = 6.1
Identities = 15/48 (31%), Positives = 24/48 (49%)
Query: 197 LHHWRKLLTLLDSVQSVSNTGQSIPLFIPFKSTNVLVRSIKPLESDTN 244
+H+W+K+L LL ++ S PLF F S ++ I E D +
Sbjct: 604 VHYWKKVLPLLKIIKKNSIPEPIDPLFKHFHSVDIQASEIVEYEEDAH 651
>Hs13699863 [PT] KOG3676 Ca2+-permeable cation channel OSM-9 and related
channels (OTRPC family)
Length = 871
Score = 29.6 bits (65), Expect = 6.1
Identities = 28/106 (26%), Positives = 49/106 (45%), Gaps = 18/106 (16%)
Query: 50 RVFINRNKVLKSITNSDTIFEAPILSNNSIIRLKTPAIRLHLSNEDMKFLLNEIRD---- 105
R+F + N L+++ N+D + + + I + IR +++ED + L + +D
Sbjct: 355 RLFPDSN--LEAVLNNDGLSPLMMAAKTGKIGVFQHIIRREVTDEDTRHLSRKFKDWAYG 412
Query: 106 SLLFMLYELCSPILEEKVLNKLKIDTFMDFADVLEILKKGSSLETR 151
+ LY+L S +DT + A VLEIL S +E R
Sbjct: 413 PVYSSLYDLSS------------LDTCGEEASVLEILVYNSKIENR 446
>7292032 [T] KOG3775 Mitogen-activated protein kinase scaffold protein JIP
Length = 483
Score = 29.6 bits (65), Expect = 6.1
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 201 RKLLTLLDSVQSVSNTGQSIPLFIPFKSTNVLVRSIKPLESDTNSSKSEDPPILIEPEDD 260
R LL L SV+++++ G T V+ ++++ + + +S + IL E D
Sbjct: 339 RYLLGYLGSVETLAHKG-----------TGVVCQAVRKIVGEYGNSPTGQTCIL-EVSDQ 386
Query: 261 GLGQVPRDEIEMVDQDPNDIKLDTKDDKKPIFDYQY 296
GL V R PN K DKKP DY Y
Sbjct: 387 GLRMVDRS-------GPNQ----NKKDKKPCIDYFY 411
>YHR052w [S] KOG1685 Uncharacterized conserved protein
Length = 376
Score = 29.3 bits (64), Expect = 8.0
Identities = 32/131 (24%), Positives = 59/131 (44%), Gaps = 12/131 (9%)
Query: 47 LSVRVFINRNKVLKSITNSDTIFEAPILSNNSIIRL-KTPAIRLHLSNEDM----KFLLN 101
+S+R N+ L ++TN+ + N ++L + + +HL N + +F+ N
Sbjct: 207 ISIRTHANKEFSLTTLTNNIK----KVYMNQLPVKLPRGTTLNVHLGNLEWLRPEEFVDN 262
Query: 102 -EIRDSLLFMLYELCSPILEEKVLNKLKIDTFMDFADVLEILKKGSSLETRSTDVYNPID 160
E+ L Y++ S ++ L + D D LE KK ET D+ ID
Sbjct: 263 VELISEQLIKAYQIRSIFIKTNRSPVLPLYYNQDVLDELEA-KKDKIEETHEDDMVT-ID 320
Query: 161 GIDVHITSIER 171
G+ VH+++ +
Sbjct: 321 GVQVHLSTFNK 331
>Hs7662018 [K] KOG1634 Predicted transcription factor DATF1 contains PHD and
TFS2M domains
Length = 2039
Score = 29.3 bits (64), Expect = 8.0
Identities = 22/67 (32%), Positives = 29/67 (42%), Gaps = 3/67 (4%)
Query: 188 DILIENIDKLHHWRKLLTLLDSVQSVSNTGQSIPLFIPFKSTNVLVRSIKPLESDTNSSK 247
DIL++NI+ +H +R+ + S V NT P P KS RS P S S
Sbjct: 1742 DILMQNIETVHPFRRGSAVATSHFEVGNT---CPSEFPSKSITFTSRSTSPRTSTNFSPM 1798
Query: 248 SEDPPIL 254
P L
Sbjct: 1799 RPQQPNL 1805
>Hs14149875 [B] KOG2747 Histone acetyltransferase (MYST family)
Length = 458
Score = 29.3 bits (64), Expect = 8.0
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 15/91 (16%)
Query: 173 GKKSYKLHFSHNWRLDILIENIDKLHHWRKLLTLLDSVQSVS-------NTGQSIPLFIP 225
GK SY+ ++S W +L+EN L +R L++ D Q S +T QS+ +
Sbjct: 357 GKLSYRSYWS--W---VLLEN---LRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKY 408
Query: 226 FKSTNVLVRSIKPLESDTNSSKSEDPPILIE 256
+K +V+ + K +E S++ + PPI ++
Sbjct: 409 WKGQHVICVTPKLVEEHLKSAQYKKPPITVD 439
>7303176 [A] KOG1896 mRNA cleavage and polyadenylation factor II complex
subunit CFT1 (CPSF subunit)
Length = 1455
Score = 29.3 bits (64), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 268 DEIEMVDQDPNDIKLDTKDDKKPIFDYQ 295
D++ ++DQ P I LD D+++ I YQ
Sbjct: 908 DQLNLLDQQPTHIDLDENDEQEEIESYQ 935
>7294602 [J] KOG4772 Predicted tRNA-splicing endonuclease subunit
Length = 368
Score = 29.3 bits (64), Expect = 8.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 234 RSIKPLESDTNSSKSEDPPILIEPEDDGLGQVPRDEIEMVDQDPNDIKLDTKDDKKPIFD 293
+ ++ L+ S K+EDP I+++P D GQ R +E ++P K + + D
Sbjct: 215 KRMEDLKELITSQKAEDPNIVVDPIDLKFGQRKRMAVEKPIEEPASKKEKFSTTGRSLVD 274
Query: 294 YQYKG 298
Q KG
Sbjct: 275 -QLKG 278
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,450,272
Number of Sequences: 60738
Number of extensions: 858762
Number of successful extensions: 2436
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2423
Number of HSP's gapped (non-prelim): 29
length of query: 320
length of database: 30,389,216
effective HSP length: 106
effective length of query: 214
effective length of database: 23,950,988
effective search space: 5125511432
effective search space used: 5125511432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)