ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1069 good A KOG3064 RNA processing and modification RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1069 360889 359984 -302
(302 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YAL025c [A] KOG3064 RNA-binding nuclear protein (MAK16) containi... 257 2e-68
SPAC222.06 [A] KOG3064 RNA-binding nuclear protein (MAK16) conta... 198 9e-51
At1g23280 [A] KOG3064 RNA-binding nuclear protein (MAK16) contai... 166 5e-41
Hs14210516 [A] KOG3064 RNA-binding nuclear protein (MAK16) conta... 164 1e-40
7290981 [A] KOG3064 RNA-binding nuclear protein (MAK16) containi... 161 9e-40
CE04006 [A] KOG3064 RNA-binding nuclear protein (MAK16) containi... 138 9e-33
ECU10g0830 [A] KOG3064 RNA-binding nuclear protein (MAK16) conta... 130 3e-30
>YAL025c [A] KOG3064 RNA-binding nuclear protein (MAK16) containing a
distinct C4 Zn-finger
Length = 306
Score = 257 bits (656), Expect = 2e-68
Identities = 122/193 (63%), Positives = 137/193 (70%)
Query: 1 MSDEIIWQVINQHFCAYKVKTDKGQNFCRNEYNVTGLCSRQACPLANSKYATVKNVDGTL 60
MSDEI+WQVINQ FC++++K GQNFCRNEYNVTGLC+RQ+CPLANSKYATVK +G L
Sbjct: 1 MSDEIVWQVINQSFCSHRIKAPNGQNFCRNEYNVTGLCTRQSCPLANSKYATVKCDNGKL 60
Query: 61 YLYMKTAERAHTPAKLWERVKLSKNYTKALAQIDEHLLYWNKFLIHKCKQRMTKLTQVMI 120
YLYMKT ERAHTPAKLWER+KLSKNYTKAL QIDEHLL+W+KF HKCKQR TKLTQVMI
Sbjct: 61 YLYMKTPERAHTPAKLWERIKLSKNYTKALQQIDEHLLHWSKFFRHKCKQRFTKLTQVMI 120
Query: 121 TXXXXXXXXXXXHYVGIAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVYGDKPL 180
T HYVG+AP SG YGDKPL
Sbjct: 121 TERRLALREEERHYVGVAPKVKRREQNRERKALVAAKIEKAIEKELMDRLKSGAYGDKPL 180
Query: 181 NVDEKIWKKVMGR 193
NVDEK+WKK+MG+
Sbjct: 181 NVDEKVWKKIMGQ 193
>SPAC222.06 [A] KOG3064 RNA-binding nuclear protein (MAK16) containing a
distinct C4 Zn-finger
Length = 302
Score = 198 bits (503), Expect = 9e-51
Identities = 96/189 (50%), Positives = 121/189 (63%), Gaps = 2/189 (1%)
Query: 3 DEIIWQVINQHFCAYKVKTDKGQNFCRNEYNVTGLCSRQACPLANSKYATVKNVDGTLYL 62
DE+IWQV+ FC+Y++K + QNFCRNEYNVTGLC+RQ+CPLANS+YATV+ +G LYL
Sbjct: 4 DEVIWQVVGHEFCSYRIKGE-AQNFCRNEYNVTGLCNRQSCPLANSRYATVREDNGKLYL 62
Query: 63 YMKTAERAHTPAKLWERVKLSKNYTKALAQIDEHLLYWNKFLIHKCKQRMTKLTQVMITX 122
YMKT ERAH P+KLW+R+KLSKNY KAL QID+ LLYW IH+CKQR+T+LTQ ++
Sbjct: 63 YMKTIERAHFPSKLWQRIKLSKNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLLKA 122
Query: 123 XXXXXXXXXXHYVGIAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVYGDKPLNV 182
+ I P SGVYGD+PLNV
Sbjct: 123 RRLALKHQPA-LIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLKSGVYGDQPLNV 181
Query: 183 DEKIWKKVM 191
+E+IW KV+
Sbjct: 182 NEEIWNKVL 190
>At1g23280 [A] KOG3064 RNA-binding nuclear protein (MAK16) containing a
distinct C4 Zn-finger
Length = 303
Score = 166 bits (419), Expect = 5e-41
Identities = 76/118 (64%), Positives = 91/118 (76%), Gaps = 1/118 (0%)
Query: 3 DEIIWQVINQHFCAYKVKTDKGQNFCRNEYNVTGLCSRQACPLANSKYATVKNVDGTLYL 62
DE+IWQVI C+Y K + G FCRN+YNVTG+C+R +CPLANS+YAT+++ DG YL
Sbjct: 4 DEVIWQVIRHKHCSYMAKIETGI-FCRNQYNVTGICNRSSCPLANSRYATIRDHDGVFYL 62
Query: 63 YMKTAERAHTPAKLWERVKLSKNYTKALAQIDEHLLYWNKFLIHKCKQRMTKLTQVMI 120
YMKT ERAH P KLWERVKL NY KAL ID+HLLYW K L HK KQR+TK+TQ+ I
Sbjct: 63 YMKTIERAHMPNKLWERVKLPVNYEKALEMIDKHLLYWPKLLQHKVKQRLTKMTQMRI 120
>Hs14210516 [A] KOG3064 RNA-binding nuclear protein (MAK16) containing a
distinct C4 Zn-finger
Length = 300
Score = 164 bits (416), Expect = 1e-40
Identities = 74/120 (61%), Positives = 97/120 (80%), Gaps = 2/120 (1%)
Query: 2 SDEIIWQVI-NQHFCAYKVKTDKGQNFCRNEYNVTGLCSRQACPLANSKYATVKNVDGTL 60
SD++IW + N+ FC++K++T K Q+FCRNEY++TGLC+R +CPLANS+YAT+K G
Sbjct: 3 SDDVIWDTLGNKQFCSFKIRT-KTQSFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQC 61
Query: 61 YLYMKTAERAHTPAKLWERVKLSKNYTKALAQIDEHLLYWNKFLIHKCKQRMTKLTQVMI 120
YLYMK ERA P +LWERV+LSKNY KAL QIDE+L+YW +F+ HKCKQR TK+TQ +I
Sbjct: 62 YLYMKVIERAAFPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLI 121
>7290981 [A] KOG3064 RNA-binding nuclear protein (MAK16) containing a
distinct C4 Zn-finger
Length = 343
Score = 161 bits (408), Expect = 9e-40
Identities = 69/118 (58%), Positives = 99/118 (83%), Gaps = 1/118 (0%)
Query: 3 DEIIWQVINQHFCAYKVKTDKGQNFCRNEYNVTGLCSRQACPLANSKYATVKNVDGTLYL 62
D+++W +IN+ FC++KVKTD + FCR+EYN+TGLC+R+ CPLANS+YATV+ G +YL
Sbjct: 4 DDVVWSIINKSFCSHKVKTDT-RTFCRHEYNLTGLCTRRTCPLANSQYATVREEKGIIYL 62
Query: 63 YMKTAERAHTPAKLWERVKLSKNYTKALAQIDEHLLYWNKFLIHKCKQRMTKLTQVMI 120
++KTAERAH P+KLWER+KLS+N+ KA+ QI+E+L++W K++I K KQR K+TQ +I
Sbjct: 63 FIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFWPKYMIAKNKQRFLKITQYLI 120
>CE04006 [A] KOG3064 RNA-binding nuclear protein (MAK16) containing a
distinct C4 Zn-finger
Length = 323
Score = 138 bits (348), Expect = 9e-33
Identities = 60/118 (50%), Positives = 87/118 (72%), Gaps = 1/118 (0%)
Query: 3 DEIIWQVINQHFCAYKVKTDKGQNFCRNEYNVTGLCSRQACPLANSKYATVKNVDGTLYL 62
D++ W ++N+ CAYK T K + FC+NE N+TGLC+R +CPLANS+YATV+ +G YL
Sbjct: 4 DDVTWNILNKGQCAYKAWT-KPKMFCKNEMNLTGLCNRASCPLANSQYATVREENGVCYL 62
Query: 63 YMKTAERAHTPAKLWERVKLSKNYTKALAQIDEHLLYWNKFLIHKCKQRMTKLTQVMI 120
Y K ER+H P +LWE+ KLSK+ KAL QI + LL+W++++ HKCK R+ ++ Q +I
Sbjct: 63 YAKVVERSHYPRRLWEKTKLSKDMNKALEQISDQLLHWSEYVRHKCKARLIRIHQYLI 120
>ECU10g0830 [A] KOG3064 RNA-binding nuclear protein (MAK16) containing a
distinct C4 Zn-finger
Length = 233
Score = 130 bits (326), Expect = 3e-30
Identities = 59/120 (49%), Positives = 91/120 (75%), Gaps = 2/120 (1%)
Query: 1 MSDEIIWQVIN-QHFCAYKVKTDKGQNFCRNEYNVTGLCSRQACPLANSKYATVKNVDGT 59
MSDE +W+ I+ ++ C++K++T++ CRN+ NVTGLC R +CPLANS+YATV+ V
Sbjct: 1 MSDESLWRNISGENHCSFKMRTEEN-TLCRNQNNVTGLCDRFSCPLANSRYATVRAVGEE 59
Query: 60 LYLYMKTAERAHTPAKLWERVKLSKNYTKALAQIDEHLLYWNKFLIHKCKQRMTKLTQVM 119
L+L++K ER H P +E+++LS NY +AL QI+E L +W++ +IHKCKQ+++KLTQ +
Sbjct: 60 LFLFVKEPERVHVPRDAYEQIRLSSNYEEALKQIEESLEFWDEKVIHKCKQKLSKLTQYL 119
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,907,988
Number of Sequences: 60738
Number of extensions: 301710
Number of successful extensions: 641
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 10
length of query: 302
length of database: 30,389,216
effective HSP length: 106
effective length of query: 196
effective length of database: 23,950,988
effective search space: 4694393648
effective search space used: 4694393648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)