ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI1123    suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI1123 378600 376276 -775 
         (775 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR034c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...    63   2e-09
SPAPB1E7.04c [M] KOG4701 Chitinase                                     53   2e-06

>YDR034c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 790

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 29/66 (43%), Positives = 42/66 (62%), Gaps = 4/66 (6%)

Query: 38  TVSKTATGKRKFHKKSKNGCDHCKRRRVKCDETRPHCLNCKKMSLDCVYTPVQPRSRKNS 97
           T  K  T KRK+   S+NGC  CKRRR+KCDET+P C  C +++  CVY  + P+++K  
Sbjct: 143 TDKKGNTVKRKY---SRNGCSECKRRRMKCDETKPTCWQCARLNRQCVYV-LNPKNKKRR 198

Query: 98  AATAPK 103
            + A +
Sbjct: 199 TSNAQR 204


>SPAPB1E7.04c [M] KOG4701 Chitinase
          Length = 1236

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 102/574 (17%), Positives = 201/574 (34%), Gaps = 46/574 (8%)

Query: 85  VYTPVQPRSRKNSAATAPKHSSKVSKP------ATVSTPTEPISLNQVDILVNTMKADAE 138
           V T  QP S +    T    S+ V +P      ++VS P+      Q    +++  + + 
Sbjct: 433 VSTVTQPASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASS 492

Query: 139 LEXXXXXXXXXXXXXXXXXXXXXXXXXNVKVKSERSAA-ASPNKQAMGQDNLLLPPIAQN 197
            +                         +    +  S+  +SP    +   + +  P + +
Sbjct: 493 PQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSI--PTSSS 550

Query: 198 SNFXXXXXXXXXXXXXXXXXXMTLTNSEKFAAQFEVPNSPSTGMQSQPMNVSNSIASILA 257
           S+F                     + S   ++    P+S S  + S   + + S AS  +
Sbjct: 551 SDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSS 610

Query: 258 GGKLPSHLSSNLALLQQLTQSPQRPSTKLPSNNGAASIPGGFNL--KQLGTFPTAGIGGV 315
              + S +SS+  +L   T     PST     + ++ I G  ++    + T P +     
Sbjct: 611 PSSISSSISSSSTILSSPT-----PSTSSLMISSSSIISGSSSILSSSISTIPISSSLS- 664

Query: 316 TYDFQELLGLKSPPNTSTTETV---PTVSHDNDPLKQESAAEVLASLQMKQQQKTSNPLD 372
           TY    +    +  ++S++  V   P  S  + P+   S+     S  +     +S  L 
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLT 724

Query: 373 SNNLDIGTPSLPNNPTISPAAPMSPLTKLDDSQARGNADSKSVGPNGGIVNSNATSMSKS 432
           + +     P+  N+ T+  A+  + L               S+  +  IV+S   S   S
Sbjct: 725 AMSSSSAIPTSVNSSTLITASSSNTLLS-------------SITSSSAIVSSTTVSNISS 771

Query: 433 NTQESQASSDTELSRIGTIASMIDFSTNTNLNLIDLKLFHHYCTNVWPTITAAGISEKKI 492
           N   + ASS ++L+   T+A+ +  S++++      +      TN + T   A       
Sbjct: 772 NLPSATASSQSQLTNSSTLATSLYLSSSSS------RTISTSSTNEYNTSFHAPTVSSTT 825

Query: 493 WSVDVPEIAFEYPFLMHALLAFSATHFSRTESGLERYVTQHXXXXXXXXXXXXXXINESN 552
            S     +A       +++ + +    S   S      +                ++ S 
Sbjct: 826 SSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAYTTDSVTSTTALTSQGPSSSVVSSSL 885

Query: 553 TDALVASAIILIMDSLANAATPTASGVNSPLNSG--SISTSAWIFHVKGAA---TILTAV 607
           +     S  I +  S+A A T T S  +S + SG  S ++S+W      +A   ++  +V
Sbjct: 886 SSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSVAASV 945

Query: 608 WPLTEK--SRFYNLINVDLSDLGDVINQENGSIA 639
            P +    S + +   VD S           SIA
Sbjct: 946 TPTSSSSASSWSSSSEVDPSTAASATGSSTSSIA 979


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,163,841
Number of Sequences: 60738
Number of extensions: 1693108
Number of successful extensions: 5072
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5066
Number of HSP's gapped (non-prelim): 4
length of query: 775
length of database: 30,389,216
effective HSP length: 114
effective length of query: 661
effective length of database: 23,465,084
effective search space: 15510420524
effective search space used: 15510420524
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)