ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1196 good A KOG3454 RNA processing and modification U1 snRNP-specific protein C
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1196 408150 407584 -189
(189 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR298c [A] KOG3454 U1 snRNP-specific protein C 128 4e-30
SPBP35G2.09 [A] KOG3454 U1 snRNP-specific protein C 55 7e-08
Hs4507127 [A] KOG3454 U1 snRNP-specific protein C 54 2e-07
Hs22052125 [A] KOG3454 U1 snRNP-specific protein C 52 5e-07
7300460 [A] KOG3454 U1 snRNP-specific protein C 49 5e-06
>YLR298c [A] KOG3454 U1 snRNP-specific protein C
Length = 231
Score = 128 bits (322), Expect = 4e-30
Identities = 79/210 (37%), Positives = 108/210 (50%), Gaps = 23/210 (10%)
Query: 1 MVRFYCWYCKSYLTHDTASVRKSHLLGKNHIRLVADYYRNISL-IEESKKLKRTKNRKPH 59
M R+YC YC SYLTHDT SVRKSHL+GKNH+R+ ADYYRN + I KR K
Sbjct: 1 MTRYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYYRNKARDIINKHNHKRRHIGKRG 60
Query: 60 EKEVTESRNAPRCVIHCPTNRRKR----MMKITKNKDTLDDLDVLDAIYKGSPGYERIFR 115
KE S + C +N+ KR + K+ + + +D L +Y GSPGY ++F
Sbjct: 61 RKERENSSQNETLKVTCLSNKEKRHIMHVKKMNQKELAQTSIDTLKLLYDGSPGYSKVFV 120
Query: 116 PENRIDIGHLLKVSKQPQRGNV------------NRNSVAK----PTLNESTSVLPPPRT 159
NR DIG L+K SK PQR N +R+ + P LN + PP
Sbjct: 121 DANRFDIGDLVKASKLPQRANEKSAHHSFKQTSRSRDETCESNPFPRLNNPKKLEPPKIL 180
Query: 160 LAWNNTY--SMKFHDPSLLQKSINHTVKQL 187
W+NT + F+ +LQ +I + K++
Sbjct: 181 SQWSNTIPKTSIFYSVDILQTTIKESKKRM 210
>SPBP35G2.09 [A] KOG3454 U1 snRNP-specific protein C
Length = 182
Score = 54.7 bits (130), Expect = 7e-08
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 1 MVRFYCWYCKSYLTHDTASVRKSHLLGKNHIRLVADYYRNISLIEESKKLK 51
M R+ C YC+ +LTHD+ SVRK+H G+ HI+ V DYY ++ E K+L+
Sbjct: 1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLE 51
>Hs4507127 [A] KOG3454 U1 snRNP-specific protein C
Length = 159
Score = 53.5 bits (127), Expect = 2e-07
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 1 MVRFYCWYCKSYLTHDTASVRKSHLLGKNHIRLVADYYR 39
M +FYC YC +YLTHD+ SVRK+H G+ H V DYY+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ 39
>Hs22052125 [A] KOG3454 U1 snRNP-specific protein C
Length = 155
Score = 52.0 bits (123), Expect = 5e-07
Identities = 21/39 (53%), Positives = 27/39 (68%)
Query: 1 MVRFYCWYCKSYLTHDTASVRKSHLLGKNHIRLVADYYR 39
M +FYC YC +YLTHD+ VRK+H G+ H V DYY+
Sbjct: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQ 39
>7300460 [A] KOG3454 U1 snRNP-specific protein C
Length = 145
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/39 (51%), Positives = 27/39 (68%)
Query: 1 MVRFYCWYCKSYLTHDTASVRKSHLLGKNHIRLVADYYR 39
M ++YC YC +YLTHD+ SVRK+H G+ H V YY+
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQ 39
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,161,116
Number of Sequences: 60738
Number of extensions: 507024
Number of successful extensions: 1581
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1574
Number of HSP's gapped (non-prelim): 5
length of query: 189
length of database: 30,389,216
effective HSP length: 100
effective length of query: 89
effective length of database: 24,315,416
effective search space: 2164072024
effective search space used: 2164072024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)