ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI1246    suspect: LH   R     KOG4253  General function prediction only                               Tryptophan-rich basic nuclear protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI1246 428502 427864 -213 
         (213 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL020c [R] KOG4253 Tryptophan-rich basic nuclear protein              92   4e-19

>YGL020c [R] KOG4253 Tryptophan-rich basic nuclear protein
          Length = 235

 Score = 92.4 bits (228), Expect = 4e-19
 Identities = 56/168 (33%), Positives = 81/168 (47%), Gaps = 19/168 (11%)

Query: 25  IQRFAQANSTKLKEL--MHQRQAILAEQKEISAQDQYVKWTKNNRTLXXXXXXXXXXXXX 82
           I +FA  N    K L  + +R  +      ISAQD Y KWTKNNR L             
Sbjct: 29  ISKFAPGNELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDE 88

Query: 83  LLSQVDRTKASLKKVKLVLITVPFTILKFYKGKMPIYDLPKG---LFPNYLQGLFQHGWV 139
           + S+    +A L K++L+ +TVPF + K   GK P+Y L      LFP ++ G++  GW+
Sbjct: 89  IQSENKAFQAHLHKLRLLALTVPFFVFKIMYGKTPVYKLSSSTSTLFPTFVSGVWSQGWL 148

Query: 140 YLALGPL--------------NIKKVGDGTHVTVSLAIWLFALLKVVS 173
           Y+ L PL                 K  D    +VSL IW++AL+ V++
Sbjct: 149 YVLLHPLRTISQKWHIMEGKFGASKFDDMALQSVSLGIWVWALMNVIN 196


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,383,081
Number of Sequences: 60738
Number of extensions: 341436
Number of successful extensions: 784
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 1
length of query: 213
length of database: 30,389,216
effective HSP length: 102
effective length of query: 111
effective length of database: 24,193,940
effective search space: 2685527340
effective search space used: 2685527340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)