ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1361 check: MH A KOG0340 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1361 463474 462170 -435
(435 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR169w [A] KOG0340 ATP-dependent RNA helicase 630 0.0
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 437 e-122
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 286 4e-77
7303950 [A] KOG0340 ATP-dependent RNA helicase 274 2e-73
CE23814 [A] KOG0340 ATP-dependent RNA helicase 270 2e-72
CE00337 [A] KOG0330 ATP-dependent RNA helicase 260 2e-69
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 255 8e-68
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 249 6e-66
7298752 [A] KOG0330 ATP-dependent RNA helicase 247 3e-65
YHR065c [A] KOG0330 ATP-dependent RNA helicase 246 5e-65
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 232 9e-61
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 224 1e-58
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 210 3e-54
YLL008w [A] KOG0338 ATP-dependent RNA helicase 199 5e-51
7299061 [A] KOG0335 ATP-dependent RNA helicase 176 5e-44
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 176 8e-44
At1g20920 [A] KOG0334 RNA helicase 176 8e-44
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 175 1e-43
7293060 [A] KOG0334 RNA helicase 175 1e-43
YJL033w [A] KOG0343 RNA Helicase 175 1e-43
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 173 5e-43
SPCC10H11.01 [A] KOG0334 RNA helicase 172 7e-43
Hs7662318 [A] KOG0334 RNA helicase 171 2e-42
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 171 2e-42
SPBC4F6.07c [A] KOG0347 RNA helicase 171 3e-42
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 170 4e-42
CE28031 [A] KOG0334 RNA helicase 169 6e-42
CE27427 [A] KOG0334 RNA helicase 169 6e-42
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 169 1e-41
7304081 [A] KOG0338 ATP-dependent RNA helicase 168 1e-41
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 167 2e-41
7294797 [A] KOG0339 ATP-dependent RNA helicase 167 4e-41
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 166 6e-41
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 166 6e-41
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 166 8e-41
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 166 8e-41
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 165 1e-40
SPAC1093.05 [A] KOG0343 RNA Helicase 165 1e-40
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 165 1e-40
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 165 1e-40
7298204 [A] KOG0335 ATP-dependent RNA helicase 164 2e-40
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 164 2e-40
CE28369 [A] KOG0335 ATP-dependent RNA helicase 164 3e-40
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 3e-40
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 3e-40
CE24451 [A] KOG0335 ATP-dependent RNA helicase 164 3e-40
CE25231 [A] KOG0343 RNA Helicase 162 7e-40
At3g16840 [A] KOG0347 RNA helicase 162 7e-40
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 161 2e-39
At3g09620 [A] KOG0334 RNA helicase 160 3e-39
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 160 3e-39
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 160 5e-39
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 160 5e-39
Hs13514831 [A] KOG0343 RNA Helicase 159 8e-39
CE27030 [A] KOG0338 ATP-dependent RNA helicase 159 8e-39
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 159 1e-38
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 158 1e-38
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 158 1e-38
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 157 2e-38
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 157 3e-38
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 157 3e-38
YPL119c [A] KOG0335 ATP-dependent RNA helicase 157 4e-38
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 157 4e-38
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 156 5e-38
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 156 5e-38
7293369 [A] KOG0343 RNA Helicase 156 5e-38
CE17559 [A] KOG0339 ATP-dependent RNA helicase 156 7e-38
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 155 9e-38
7295314 [A] KOG0331 ATP-dependent RNA helicase 155 9e-38
YGL078c [A] KOG0331 ATP-dependent RNA helicase 155 1e-37
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 155 1e-37
YOR204w [A] KOG0335 ATP-dependent RNA helicase 154 2e-37
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 154 2e-37
7296646 [A] KOG0331 ATP-dependent RNA helicase 154 2e-37
CE23832 [A] KOG0341 DEAD-box protein abstrakt 154 2e-37
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 154 3e-37
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 153 6e-37
CE18785 [A] KOG0331 ATP-dependent RNA helicase 152 7e-37
7299006 [A] KOG0345 ATP-dependent RNA helicase 152 7e-37
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 152 7e-37
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 152 9e-37
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 152 9e-37
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 152 9e-37
7290853 [A] KOG0331 ATP-dependent RNA helicase 152 9e-37
YNL112w [A] KOG0331 ATP-dependent RNA helicase 152 1e-36
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 152 1e-36
YDL031w [A] KOG0337 ATP-dependent RNA helicase 151 2e-36
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 151 2e-36
At5g54910 [A] KOG0343 RNA Helicase 150 4e-36
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 150 5e-36
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 148 1e-35
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 148 1e-35
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 148 1e-35
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 148 2e-35
7296891 [A] KOG0341 DEAD-box protein abstrakt 148 2e-35
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 147 2e-35
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 147 2e-35
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 147 2e-35
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 147 3e-35
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 147 3e-35
YDL160c [A] KOG0326 ATP-dependent RNA helicase 147 4e-35
CE00839 [A] KOG0326 ATP-dependent RNA helicase 147 4e-35
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 146 5e-35
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 146 7e-35
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 146 7e-35
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 145 9e-35
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 145 9e-35
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 145 1e-34
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 145 1e-34
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 144 3e-34
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 144 3e-34
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 3e-34
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 143 4e-34
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 143 4e-34
CE25121 [A] KOG0335 ATP-dependent RNA helicase 143 6e-34
CE11190 [A] KOG0347 RNA helicase 143 6e-34
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 143 6e-34
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 142 7e-34
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 142 7e-34
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 142 1e-33
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 142 1e-33
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 142 1e-33
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 142 1e-33
7298989 [A] KOG0336 ATP-dependent RNA helicase 142 1e-33
CE09012 [A] KOG0335 ATP-dependent RNA helicase 142 1e-33
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 142 1e-33
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 142 1e-33
YBR237w [A] KOG0334 RNA helicase 141 2e-33
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 141 2e-33
7297629 [A] KOG0326 ATP-dependent RNA helicase 141 2e-33
CE27553 [A] KOG0337 ATP-dependent RNA helicase 141 2e-33
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 140 4e-33
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 140 5e-33
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 140 5e-33
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 139 6e-33
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 139 6e-33
7293348 [A] KOG0348 ATP-dependent RNA helicase 139 6e-33
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 139 8e-33
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 139 8e-33
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 139 8e-33
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 139 1e-32
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 138 1e-32
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 138 2e-32
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 138 2e-32
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 138 2e-32
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 137 2e-32
ECU10g1680 [A] KOG0343 RNA Helicase 137 2e-32
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 137 2e-32
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 137 4e-32
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 136 5e-32
7302399 [A] KOG0347 RNA helicase 136 5e-32
YDL084w [A] KOG0329 ATP-dependent RNA helicase 135 9e-32
Hs9966805 [A] KOG0347 RNA helicase 135 9e-32
CE03025 [A] KOG0329 ATP-dependent RNA helicase 135 9e-32
YOR046c [A] KOG0332 ATP-dependent RNA helicase 135 2e-31
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 134 3e-31
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 134 3e-31
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 133 6e-31
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 133 6e-31
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 132 1e-30
7296990 [A] KOG0329 ATP-dependent RNA helicase 131 2e-30
YGL171w [A] KOG0344 ATP-dependent RNA helicase 131 2e-30
CE07736 [A] KOG0335 ATP-dependent RNA helicase 130 3e-30
YBR142w [A] KOG0347 RNA helicase 130 4e-30
CE22474 [A] KOG0336 ATP-dependent RNA helicase 130 4e-30
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 130 5e-30
YFL002c [A] KOG0345 ATP-dependent RNA helicase 129 9e-30
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 127 2e-29
7295505 [A] KOG0346 RNA helicase 127 3e-29
Hs9506931 [A] KOG0346 RNA helicase 125 9e-29
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 125 1e-28
SPCC1494.06c [A] KOG0346 RNA helicase 124 3e-28
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 122 8e-28
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 120 3e-27
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 118 2e-26
CE29052 [A] KOG0335 ATP-dependent RNA helicase 118 2e-26
At4g34910 [A] KOG0346 RNA helicase 117 3e-26
YLR276c [A] KOG0346 RNA helicase 117 4e-26
YKR024c [A] KOG0348 ATP-dependent RNA helicase 117 4e-26
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 117 4e-26
CE06239 [A] KOG0344 ATP-dependent RNA helicase 117 4e-26
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 116 7e-26
CE28485 [K] KOG4284 DEAD box protein 115 2e-25
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 114 2e-25
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 113 6e-25
CE27728 [A] KOG0346 RNA helicase 112 8e-25
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 110 4e-24
CE27336 [A] KOG0334 RNA helicase 110 5e-24
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 109 7e-24
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 109 7e-24
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 109 9e-24
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 109 9e-24
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 108 1e-23
CE11402 [A] KOG0334 RNA helicase 108 1e-23
CE03821 [A] KOG0345 ATP-dependent RNA helicase 108 2e-23
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 107 3e-23
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 107 3e-23
Hs14251212 [K] KOG4284 DEAD box protein 107 3e-23
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 107 5e-23
7294824 [K] KOG4284 DEAD box protein 106 6e-23
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 105 1e-22
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 105 1e-22
7293941 [A] KOG0344 ATP-dependent RNA helicase 104 3e-22
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 103 4e-22
CE18221 [A] KOG0332 ATP-dependent RNA helicase 103 4e-22
CE18220 [A] KOG0332 ATP-dependent RNA helicase 103 4e-22
CE18219 [A] KOG0332 ATP-dependent RNA helicase 103 4e-22
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 101 2e-21
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 99 2e-20
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 98 2e-20
7296165 [A] KOG0330 ATP-dependent RNA helicase 95 2e-19
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 93 7e-19
CE29051 [A] KOG0335 ATP-dependent RNA helicase 92 1e-18
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 92 2e-18
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 92 2e-18
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 89 1e-17
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 87 5e-17
CE26264 [A] KOG0335 ATP-dependent RNA helicase 86 1e-16
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 86 1e-16
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 86 1e-16
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 82 1e-15
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 75 2e-13
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 74 6e-13
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 73 7e-13
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 72 2e-12
7290730 [A] KOG0331 ATP-dependent RNA helicase 69 2e-11
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 65 2e-10
CE27320 [A] KOG0335 ATP-dependent RNA helicase 57 5e-08
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 56 9e-08
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 55 2e-07
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 55 3e-07
Hs13449289 [A] KOG0701 dsRNA-specific nuclease Dicer and related... 54 6e-07
At5g20320 [A] KOG0701 dsRNA-specific nuclease Dicer and related ... 54 6e-07
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 52 1e-06
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 630 bits (1626), Expect = 0.0
Identities = 311/426 (73%), Positives = 366/426 (85%), Gaps = 1/426 (0%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
++FKSLG SKWL E+L AMKI QPTAIQKACIP+IL+GRDCIGGA TGSGKTIAFA PML
Sbjct: 2 ADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPML 61
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
TKWSEDP GMFG+VLTPTRELAMQIAEQFTA GS+MNIRV+++VGGESIVQQA++LQ++P
Sbjct: 62 TKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKP 121
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
HFIIATPGRLAHH+++SG+DT+GGL R K+LVLDEADILLT TF+ LATC+S LPPK+K
Sbjct: 122 HFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK 181
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ LLFTAT+TDQVK+L +AP +GKPP+F ++VESVDNVAIP TL+ Y+LVPEHVKE+
Sbjct: 182 RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEA 241
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
YLYQ+LT E+Y + IIFVNRT+TAEILRRTLK L+VRV SLHSQMPQQERTNS+ RFR
Sbjct: 242 YLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFR 301
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
A AAR+LIATDVASRGLDIP VELVVNYDIP +PD FI +++ FVT++
Sbjct: 302 ANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQR 361
Query: 364 DIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQKR 423
D+ R++AIE+RINKKM E V DTAVIRK+LTKVT AKRESLMAM KE FGER++ QK+
Sbjct: 362 DVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGERKRQQKK 421
Query: 424 K-NESK 428
K N+ K
Sbjct: 422 KQNDGK 427
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 437 bits (1123), Expect = e-122
Identities = 212/423 (50%), Positives = 304/423 (71%), Gaps = 2/423 (0%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
+ F LG S WL++ L A+ I +PT IQ+ I +IL+GR+CIGGA TGSGKT AFA P
Sbjct: 5 TRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALP 64
Query: 62 MLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
++ KWS+DP G+F ++LTPTRELA+QI EQF A G+ +N++ A++VGG +++Q+I+L K
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSK 124
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
RPH ++ATPGRLA + ++GE+TI GL+R+KFLV+DEAD LL+ TF+ DL C S+LP
Sbjct: 125 RPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPAS 184
Query: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK 241
RQ LLFTAT+TD ++ L PQ KPP++ +EVE+ DN+++P TL+ +Y+ V V+
Sbjct: 185 EDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVET-DNISVPSTLQQSYIFVSSQVR 243
Query: 242 ESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQR 301
E+YL +LT + K S IIFVNRT TAE++ L+ L++RVT LHS+M Q+ER NS+ R
Sbjct: 244 EAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGR 303
Query: 302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVT 361
FRA+AA++L+ATDVASRGLDIP V+LV+N+D+P +PD +I ES+ VT
Sbjct: 304 FRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
Query: 362 EKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQ 421
E+D+ V AIE+R+ K+ E+ V + ++ + + +VT AKR++ + M GFGERR+ +
Sbjct: 364 ERDVDLVHAIEDRVGTKLSEYEHVSENKML-EYIKEVTDAKRQASLEMIDRGFGERRQKR 422
Query: 422 KRK 424
K
Sbjct: 423 NEK 425
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 286 bits (732), Expect = 4e-77
Identities = 171/441 (38%), Positives = 256/441 (57%), Gaps = 22/441 (4%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
S + F+ LG ++W VE + + +PT +Q C+P+IL GRD +G A TGSGKT AFA P
Sbjct: 56 SATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP 115
Query: 62 MLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
+L + +EDP G+F +V+TPTRELA Q+AEQF A GS +N+R +++VGG ++ Q + L
Sbjct: 116 ILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVS 175
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
RPH +I TPGR+ +L + D R KFLVLDEAD +L F +L T LP
Sbjct: 176 RPHIVITTPGRI-KVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP-- 232
Query: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK 241
RQ LLF+ATMT ++AL + + + E+ + + TL ++ + K
Sbjct: 233 KSRQTLLFSATMTSNLQALLEHSSNK------AYFYEAYEGLKTVDTLTQQFIFEDKDAK 286
Query: 242 ESYLYQILT--SEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
E YL IL+ +K ++S+ +IFV+ T + L L L+V ++HS Q R +++
Sbjct: 287 ELYLVHILSQMEDKGIRSA-MIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSAL 345
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF 359
+F++ +L+ATDVASRGLDIP V+LV+NYDIP +P ++ ++
Sbjct: 346 SKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSI 405
Query: 360 VTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSL--TKVTAAKRESLMAMDKEGF--- 414
+TE D++ + IEE + KKME + + VI SL TKV+ AKR ++M M GF
Sbjct: 406 ITETDVKLIHKIEEEVGKKMEPY----NKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDK 461
Query: 415 -GERRKLQKRKNESKEKTHRR 434
+RRKL+++ K +R
Sbjct: 462 VKDRRKLKRKTLADKGLLKKR 482
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 274 bits (700), Expect = 2e-73
Identities = 167/422 (39%), Positives = 239/422 (56%), Gaps = 15/422 (3%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ LG WLV+ L + + T IQ+ CIP IL G+DCIG A TGSGKT AFA P+L +
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
SE+P F +VLTPT ELA QI+EQF G AM +RV +V GG + ++ +L +RPH
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
++A PGRLA H+ +G DT +K+LV+DEAD +L F + L+ LP RQ
Sbjct: 129 VVAMPGRLADHL--TGCDTF-SFDNLKYLVVDEADRMLNGDFDESLSIIERCLP--KTRQ 183
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYL 245
NL F+ATM D +K S P FE +VA +TL+ YLL ++ ++ L
Sbjct: 184 NLFFSATMKDFIKESSIFPIASD-----CFEWSQDSDVATVETLDQRYLLCADYDRDMVL 238
Query: 246 YQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+ L E+ ++ +IF N ++L TLK++++ LH M Q+ER ++ RF+
Sbjct: 239 IEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFK 298
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL-CFVTE 362
+ R LIATDVA+RGLDIP VELV+N+ +P P +I S+ F
Sbjct: 299 SNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFP 358
Query: 363 KDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQK 422
+D++ + AIEE IN K+ E D ++ + +V +RES M +D F ER + +
Sbjct: 359 RDLELLAAIEEEINTKLTEHPI--DQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYR 416
Query: 423 RK 424
RK
Sbjct: 417 RK 418
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 270 bits (691), Expect = 2e-72
Identities = 153/380 (40%), Positives = 237/380 (62%), Gaps = 12/380 (3%)
Query: 48 ANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVV 107
A TG+GKT+AFA P+L K S DP G++ ++LTPTRELA QIAEQFTA G + ++ +++V
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIV 249
Query: 108 GGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGL-KRVKFLVLDEADILLTET 166
GG S++ QA EL +RPH ++ATPGRLA ++ S DTI + K+++F VLDEAD +L
Sbjct: 250 GGRSLIHQARELSERPHVVVATPGRLA-DLIESDPDTIAKVFKKIQFFVLDEADRMLEGQ 308
Query: 167 FSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIP 226
++ L + KRQ LL +AT+T+ + L + + P F FE + D+ +
Sbjct: 309 YNDQLKPIFESI--SEKRQTLLLSATITNNINMLH---RVSTRKPYF-FEDKGKDDESTV 362
Query: 227 KTLETTYLLVPEHVKESYLYQILT--SEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVT 284
LE Y++ P VK++YL ++ SEK KSS +IF + L + L RV
Sbjct: 363 DRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVG 422
Query: 285 SLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXX 344
SLHSQ+PQ++R ++ FR++ +V+I TDVASRGLDIP V+LVVN+++P P T+I
Sbjct: 423 SLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRV 482
Query: 345 XXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRE 404
+L FVT+ D++ ++A+E+ I KK++E + K +T+V AK+E
Sbjct: 483 GRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELK--VSPKHVTKYVTQVLVAKKE 540
Query: 405 SLMAMDKEGFGERRKLQKRK 424
+ + ++ + FGE++++ +RK
Sbjct: 541 AELKLENQKFGEKKEINRRK 560
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 260 bits (665), Expect = 2e-69
Identities = 154/436 (35%), Positives = 245/436 (55%), Gaps = 17/436 (3%)
Query: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
+ F LG S+ L +A + ++P+ IQ+A +P L+G+D IG A TGSGKT AFA
Sbjct: 41 VKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAI 100
Query: 61 PMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
P+L + PQ F +VLTPTRELA QI +QF A GS + + A++VGG + QA+ L
Sbjct: 101 PVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALA 160
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+RPH I+ATPGRL H+ E+T G LK +KFL++DEAD +L F +L + ++P
Sbjct: 161 RRPHIIVATPGRLVDHL----ENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIP 216
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
+R+ LF+ATMT +V L A + + ++VDN L+ Y+ VP
Sbjct: 217 --RERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDN------LKQHYIFVPNK 268
Query: 240 VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
KE+YL +L ++ +S I+F T + L+ L ++ LH QM Q++R S+
Sbjct: 269 YKETYLVYLL--NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSL 326
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF 359
+F+++A +L+ TDVA+RGLDIP V++V+NYD+P ++ ++
Sbjct: 327 NKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITV 386
Query: 360 VTEKDIQRVEAIEERINKKMEEFTDV-GDTAVIRKSLTKVTAAKRESLMAMD-KEGFGER 417
VT+ D++ + IE + KK++E+ V + V+ + + T R + MD K+ G++
Sbjct: 387 VTQYDVEAYQKIEANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKK 446
Query: 418 RKLQKRKNESKEKTHR 433
R+ +++E R
Sbjct: 447 RRQNDDFGDTEESGGR 462
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 255 bits (652), Expect = 8e-68
Identities = 156/414 (37%), Positives = 237/414 (56%), Gaps = 17/414 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
FK LG + L EA + + +PT IQ IP L+GRD IG A TGSGKT AFA P+L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
E PQ +F +VLTPTRELA QI+EQF A GS++ ++ A++VGG + Q++ L K+PH
Sbjct: 86 LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 145
Query: 126 IIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
IIATPGRL H+ E+T G L+ +K+LV+DEAD +L F ++ + ++P R
Sbjct: 146 IIATPGRLIDHL----ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP--RDR 199
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
+ LF+ATMT +V+ L A + + ++V+ L+ Y+ +P K++Y
Sbjct: 200 KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEK------LQQYYIFIPSKFKDTY 253
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRA 304
L IL + +S +IF + + L++L LH QM Q +R S+ +F+A
Sbjct: 254 LVYIL--NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKA 311
Query: 305 QAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD 364
+A +L+ATDVASRGLDIP V++VVN+DIP + +I +++ FVT+ D
Sbjct: 312 KARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYD 371
Query: 365 IQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERR 418
++ + IE I KK+ F D ++ +V A+R + M + + G ++R
Sbjct: 372 VELFQRIEHLIGKKLPGFPTQDDEVMMLTE--RVAEAQRFARMELREHGEKKKR 423
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 249 bits (636), Expect = 6e-66
Identities = 159/426 (37%), Positives = 237/426 (55%), Gaps = 20/426 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
FK LG L EA + PT IQ+ IP +L RD IG A TGSGKT AFA P++ +
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+P F +VL PTRELA QI+EQF A G ++ +R ++VGG +V QA+ L K+PH
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHV 167
Query: 126 IIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGRL H+ E+T G LK +K+L++DEAD LL F + + I+P ++R
Sbjct: 168 LVCTPGRLMDHL----ENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIP--HER 221
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
+ LLF+ATMT +V+ L A + + + +VD TL YL P K++Y
Sbjct: 222 RTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVD------TLIQRYLFFPFKHKDTY 275
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRA 304
L ++ + +S IIF + L L++L LH Q+ Q R ++ +F++
Sbjct: 276 LVYLV--NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKS 333
Query: 305 QAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD 364
A L+ATDVA+RGLDIP+V++V+NYDIP + +I +S+ VT+ D
Sbjct: 334 GARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYD 393
Query: 365 IQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQKRK 424
++ IE I KKM+E+ ++ V S +V A+RE+++ M + +RRK K K
Sbjct: 394 LEPFLRIEATIGKKMQEY-EIDKEGVFLLS-ERVGEAQREAIIQMKE--IHDRRK-SKGK 448
Query: 425 NESKEK 430
+K K
Sbjct: 449 LHTKRK 454
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 247 bits (630), Expect = 3e-65
Identities = 152/377 (40%), Positives = 222/377 (58%), Gaps = 19/377 (5%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
+K LG ++ L +A + +K P+ IQ+ IP L+G+D IG A TGSGKT AFA P+L
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHA 122
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
E+PQ F +VLTPTRELA QI EQF A GS + I+ +VVGG +V Q ++L K+PH
Sbjct: 123 LLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHI 182
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
IIATPGRL H+ N LK +K+LV+DEAD +L F +L + +LP +R+
Sbjct: 183 IIATPGRLVDHLENMKG---FNLKAIKYLVMDEADRILNMDFEVELDKILKVLP--RERR 237
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYL 245
LF+ATMT +VK L A K PV +VE + + L+ +YL +P K+ YL
Sbjct: 238 TFLFSATMTKKVKKLQRASL---KDPV---KVEVSNKYQTVEQLQQSYLFIPVKYKDVYL 291
Query: 246 YQILTSEKYVKSSCIIF---VNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRF 302
IL + +S +IF N TV ++ L++L + LH QM Q +R ++ +F
Sbjct: 292 VHIL--NELAGNSFMIFCSTCNNTVKTALM---LRALGLAAIPLHGQMSQNKRLAALNKF 346
Query: 303 RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
+A+ +LI+TDVASRGLDIP V++VVN+DIP + +I +++ V++
Sbjct: 347 KAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQ 406
Query: 363 KDIQRVEAIEERINKKM 379
DI+ + IE + K++
Sbjct: 407 YDIELYQRIEHLLGKQL 423
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 246 bits (628), Expect = 5e-65
Identities = 158/433 (36%), Positives = 235/433 (53%), Gaps = 25/433 (5%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
S F L L++A + +PT IQ IP L+G D IG A TGSGKT AFA P
Sbjct: 121 SFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIP 180
Query: 62 MLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
+L + D + + +L PTRELA QI E F + GS M +R +VGG +++ QA +L +
Sbjct: 181 ILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
+PH IIATPGRL H+ E+T G L+++KFLV+DEAD LL F L + I+P
Sbjct: 241 KPHIIIATPGRLMDHL----ENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT 296
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
+ +R LF+ATMT ++ L A T + + ++VD TL T ++VP +
Sbjct: 297 Q-ERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVD------TLVQTLMVVPGGL 349
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
K +YL +L +++ + IIF AE L L+ T+LH + Q +R S+
Sbjct: 350 KNTYLIYLL--NEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLD 407
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFV 360
F+A +L+ATDVA+RGLDIP V++VVNYDIP + ++I +S+ V
Sbjct: 408 LFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 467
Query: 361 TEKDIQRVEAIEERINKKM-EEFTDVGDTAVIRKSLTKVTAAKRESLMAMDK-------E 412
++ D++ + IEE + KK+ +E D +R S+ K A E +M M++
Sbjct: 468 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDK---ANGEVVMEMNRRNKEKIAR 524
Query: 413 GFGERRKLQKRKN 425
G G R ++ R+N
Sbjct: 525 GKGRRGRMMTREN 537
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 232 bits (591), Expect = 9e-61
Identities = 165/442 (37%), Positives = 234/442 (52%), Gaps = 39/442 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F LG + LV+A + P+ IQ +P L+G+D IG A TGSGKT AFA P+L
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 66 WSE-------------DPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESI 112
E DP F VL+PTRELA+QIAEQF A G+ +++R A++VGG
Sbjct: 71 LLEYVYDSEPKKGRRPDP-AFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 113 VQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDL 171
+QQ I L KRPH +ATPGRL H+ DT G LK +K+LVLDEAD LL E F K L
Sbjct: 130 MQQTIALGKRPH--VATPGRLWDHM----SDTKGFSLKSLKYLVLDEADRLLNEDFEKSL 183
Query: 172 ATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLET 231
+ +P + R+ LF+ATMT +V+ L A + PV ++E+ + TL+
Sbjct: 184 NQILEEIPLE--RKTFLFSATMTKKVRKLQRACL---RNPV---KIEAASKYSTVDTLKQ 235
Query: 232 TYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMP 291
Y V K+ YL IL+ + +S+ +IF L L+SL R + QM
Sbjct: 236 QYRFVAAKYKDCYLVYILS--EMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMT 293
Query: 292 QQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXX 351
Q +R ++ +F+A +L+ TDVASRGLDIP V++V+NYDIP N +I
Sbjct: 294 QSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAG 353
Query: 352 XXXESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDK 411
+ V + +++ IE+ I KK+ E+ D + L +V AK+ S M M +
Sbjct: 354 RSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDE--VLSLLERVAEAKKLSAMNMKE 411
Query: 412 EGFGERRKLQKRKNESKEKTHR 433
G +KR+ E E++ R
Sbjct: 412 SGG------RKRRGEDDEESER 427
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 224 bits (572), Expect = 1e-58
Identities = 140/419 (33%), Positives = 225/419 (53%), Gaps = 21/419 (5%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64
EF L + L++ I +PT +Q+ IP +L G D I + TGSGKT+AF P+++
Sbjct: 2 EFGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVS 61
Query: 65 KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
+ + + +V+ PTREL+ QIAE F F A +RV ++VGG + QA +L KRPH
Sbjct: 62 HLLQKNRSFYCLVVAPTRELSSQIAECFNMF-QATGLRVCLLVGGANFNVQANQLSKRPH 120
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGR+A HVL + +RV+ VLDEAD + F +DL T + L + KR
Sbjct: 121 VVVGTPGRIAEHVLKTKSFRT---ERVRKFVLDEADRFFEQDFVEDLETIIPSL--REKR 175
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
Q LLFTATM+D++ LS + K + + + L+ YL V K S
Sbjct: 176 QTLLFTATMSDEISKLSSSILKRPKT------IRTAEKYETVPALKEYYLFVAMKWKNSA 229
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRA 304
L ++L + + S I+FV+ VTA ++ L L +LH ++ Q++R +++ F+
Sbjct: 230 LVELLEMSQGM--SVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKE 287
Query: 305 QAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD 364
VL+ TD+ SRGLDI V+LV+N+D+P + +I ++ VT+ D
Sbjct: 288 SRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYD 347
Query: 365 IQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQKR 423
+++++ IE + KK+EEF +++K+ + A E++ +E E RK +R
Sbjct: 348 VEQIQKIEFTLEKKLEEF------KMMKKNFGTICARIEEAIQEA-QETLKEERKRNRR 399
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 210 bits (535), Expect = 3e-54
Identities = 120/264 (45%), Positives = 168/264 (63%), Gaps = 16/264 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F LG S WLVE + + +PT +Q CIP IL+GRDC+G A TGSGKT AF P+L K
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
SEDP G+F +VLTPTRELA QIAE+F G + ++ I+VGG +V QA+EL ++PH
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTE---TFSKDLATCVSILPPKN 182
+IATPGRLA H+ +S +I K+++FLV+DEAD LL + F+ DL ++ +P
Sbjct: 124 VIATPGRLADHLRSSNTFSI---KKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPA-- 178
Query: 183 KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKE 242
+RQ LLF+AT+TD ++ L +G F E+ V+ + L+ YLLVPE VK+
Sbjct: 179 RRQTLLFSATLTDTLREL------QGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKD 232
Query: 243 SYLYQILT--SEKYVKSSCIIFVN 264
+YL ++ +++ S IIF N
Sbjct: 233 AYLVHLIQRFQDEHEDWSIIIFTN 256
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 199 bits (507), Expect = 5e-51
Identities = 149/431 (34%), Positives = 222/431 (50%), Gaps = 34/431 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F SL S+ +++ L ++ V+P+ IQ A IP L G+D I GA TGSGKT AF P++ +
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 66 WSEDPQGMFG---IVLTPTRELAMQIAE---QFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
P + IVL PTRELA+Q+A+ Q F S + +A VGG ++ QQ L
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLA--VGGLNLRQQEQML 350
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ RP +IATPGR H+ NS + V+ LV+DEAD +L E F +L + +LP
Sbjct: 351 KSRPDIVIATPGRFIDHIRNSASFNVDS---VEILVMDEADRMLEEGFQDELNEIMGLLP 407
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
+ RQNLLF+ATM ++K+L K PV ++ A T E + +H
Sbjct: 408 --SNRQNLLFSATMNSKIKSLVSLSL---KKPV-RIMIDPPKKAATKLTQEFVRIRKRDH 461
Query: 240 VKESYLYQILTS-EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
+K + L+ ++ + + ++FV R TA LR + L + V LH + Q++R +S
Sbjct: 462 LKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDS 521
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
V +F+ VLI TD+ASRGLDIP +E+V+NYD+P + + ++ S+
Sbjct: 522 VNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVT 581
Query: 359 FVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERR 418
FV E R +I K +EE KSLT+ A R +D E
Sbjct: 582 FVGESSQDR--SIVRAAIKSVEE----------NKSLTQGKALGRN----VDWVQIEETN 625
Query: 419 KLQKRKNESKE 429
KL + N++ E
Sbjct: 626 KLVESMNDTIE 636
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 176 bits (447), Expect = 5e-44
Identities = 124/361 (34%), Positives = 183/361 (50%), Gaps = 32/361 (8%)
Query: 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK---------------WSEDP 70
+PT +QK IP I+ GRD + A TGSGKT AF P+L + +S
Sbjct: 317 KPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRK 376
Query: 71 QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATP 130
Q G+VL PTRELA QI E+ F +R A++ GG + +Q EL + H I+ATP
Sbjct: 377 QYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATP 436
Query: 131 GRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL--PPKNKRQNLL 188
GRL + GL+ ++FLVLDEAD +L F + V L PP +RQ L+
Sbjct: 437 GRLEDMITRGKV----GLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLM 492
Query: 189 FTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQI 248
F+AT Q++ L+ ++ V V + + + + T L V E K SYL +
Sbjct: 493 FSATFPKQIQELA----SDFLSNYIFLAVGRVGSTS--ENITQTILWVYEPDKRSYLLDL 546
Query: 249 LTS----EKYVKSSC-IIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L+S +Y K S +IFV A+ L L + VTS+H Q+ER +++ FR
Sbjct: 547 LSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFR 606
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
+ +L+AT VA+RGLDIP V+ V+N+D+P + + ++ + F EK
Sbjct: 607 SGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEK 666
Query: 364 D 364
+
Sbjct: 667 N 667
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 176 bits (445), Expect = 8e-44
Identities = 121/350 (34%), Positives = 185/350 (52%), Gaps = 27/350 (7%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
++S F+S+ S+ +++ L+ + PT IQ IP L G+D +G A TGSGKT AF P
Sbjct: 257 THSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVP 316
Query: 62 MLTKWSEDPQGMFG---IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIE 118
+L + P+ + ++L PTRELAMQ T S +I V + +GG S+ Q E
Sbjct: 317 ILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQE 376
Query: 119 LQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL 178
L+KRP +IATPGR H+ NS T+ + ++ +V+DEAD +L + F+ +L +
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTV---ENIEIMVMDEADRMLEDGFADELNEIIQAC 433
Query: 179 PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPE 238
P RQ +LF+ATMTD+V D + PV F VDN KT T LL E
Sbjct: 434 P--KSRQTMLFSATMTDKV---DDLIRLSLNRPVRVF----VDN---KKT--TAKLLTQE 479
Query: 239 HVKESYLYQILTSEKYVKSSCIIFVNRTVT-------AEILRRTLKSLDVRVTSLHSQMP 291
V+ ++L + +F RT+ A +R L + T +H +
Sbjct: 480 FVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLS 539
Query: 292 QQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
Q++R +++ FR L+ATDVASRG+DI +E+V+NY+ P + ++
Sbjct: 540 QEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYL 589
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 176 bits (445), Expect = 8e-44
Identities = 115/360 (31%), Positives = 175/360 (47%), Gaps = 15/360 (4%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED 69
G + +++ + + +P IQ +P I+ GRDCIG A TGSGKT+ F PML +
Sbjct: 535 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 594
Query: 70 P-----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
P G G+V+ PTREL QI F + IR V GG + QQ EL++
Sbjct: 595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGR+ +L + I L+RV FLV+DEAD + F + + + P+ R
Sbjct: 655 IVVCTPGRMID-ILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPE--R 711
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
Q +LF+AT QV+ L A + KP SV N I + +E PE +
Sbjct: 712 QTVLFSATFPRQVETL--ARKVLNKPVEIQVGGRSVVNKDITQLVEVR----PESDRFLR 765
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRA 304
L ++L E K ++FV + L R + SLH Q +R +++ F+
Sbjct: 766 LLELL-GEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKN 824
Query: 305 QAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD 364
+LIAT VA+RGLD+ +ELVVN+D P + + ++ ++ F++E D
Sbjct: 825 DVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 884
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 175 bits (444), Expect = 1e-43
Identities = 128/391 (32%), Positives = 194/391 (48%), Gaps = 26/391 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+SL + A+ PT IQ+ +P IL G D + A TGSGKT AF PML K
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 66 WSED-PQG-MFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
+ PQG + ++L+PTR+LA Q + G ++RV+++VGG+S+ Q EL K P
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGP 149
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
IIATPGRL H +L+ +D L+ V+++V DEAD L F++ L ++ L
Sbjct: 150 DVIIATPGRLMH-LLSEVDDMT--LRTVEYVVFDEADSLFGMGFAEQLHQILTQL--SEN 204
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ LLF+AT+ + + A E P + +VE+ I L+ ++L V K S
Sbjct: 205 RQTLLFSATLPSALAEFAKAGLRE--PQLVRLDVEN----KISPDLKLSFLTVRPEEKYS 258
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L ++ +IFV+ E + K ++ + + M Q R V RFR
Sbjct: 259 ALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFR 318
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
A+ +LI TD+A+RG+DIP+++ V+N+D P P F+ + FVT +
Sbjct: 319 ARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPE 378
Query: 364 DIQ-------------RVEAIEERINKKMEE 381
D+ R E+ + K MEE
Sbjct: 379 DMPYMLDLHLFLSKPVRPAPTEDEVLKNMEE 409
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 175 bits (444), Expect = 1e-43
Identities = 122/358 (34%), Positives = 183/358 (51%), Gaps = 17/358 (4%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKW--- 66
G SK +E L + +PT IQ IP I+ GRD IG A TGSGKT+AF PM
Sbjct: 516 GVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQ 575
Query: 67 --SEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
ED G I++ PTREL MQI + F ++ +R V GG I +Q EL++
Sbjct: 576 PSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAE 635
Query: 125 FIIATPGRLAHHVL-NSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
I+ TPGR+ + NSG T L+RV ++VLDEAD + F + + + P
Sbjct: 636 IIVCTPGRMIDMLAANSGRVT--NLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPD-- 691
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ ++F+AT Q++AL A + KP EV + K +E +++ + K
Sbjct: 692 RQTVMFSATFPRQMEAL--ARRILKKP----IEVIVGGRSVVCKEVEQHVVILNDDAKFF 745
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L ++L + S I+FV++ A+IL R L SLH + Q +R +++ F+
Sbjct: 746 KLLELLGIYQEA-GSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFK 804
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVT 361
+ R+LIAT VA+RGLD+ + LVVNYD+P + + ++ + F+T
Sbjct: 805 SGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFIT 862
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 175 bits (443), Expect = 1e-43
Identities = 137/418 (32%), Positives = 209/418 (49%), Gaps = 29/418 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
FK L S ++ L ++ T IQ IP L+G D + A TGSGKT+AF P++ K
Sbjct: 43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102
Query: 66 -----WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
W+E G+ ++++PTRELAMQI E T GS + +V+GG+ V+ +E
Sbjct: 103 LYREKWTEF-DGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKD-VKFELERI 160
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
R + +I TPGR+ H+ + +G ++ LVLDEAD L F K L VS L
Sbjct: 161 SRINILIGTPGRILQHL----DQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLS 216
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVE--SVDNVA-IPKTLETTYLLV 236
P RQ LLF+AT + V L+ T+ K V T +V SV+ A P+TL+ Y+ V
Sbjct: 217 PS--RQTLLFSATQSQSVADLARLSLTDYKT-VGTHDVMDGSVNKEASTPETLQQFYIEV 273
Query: 237 PEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLD--VRVTSLHSQMPQQE 294
P K L+ + S ++K I+F++ + + T + + + + LH + Q+
Sbjct: 274 PLADKLDILFSFIKS--HLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRA 331
Query: 295 RTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXX 354
RT ++ +F L ATDV +RG+D P V+ VV D P + DT+I
Sbjct: 332 RTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKG 391
Query: 355 ESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKE 412
+SL +T Q EA +R+N + E + I++S K + +SL+ D E
Sbjct: 392 KSLIMLTP---QEQEAFLKRLNARKIEPGKLN----IKQSKKKSIKPQLQSLLFKDPE 442
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 173 bits (438), Expect = 5e-43
Identities = 125/369 (33%), Positives = 193/369 (51%), Gaps = 20/369 (5%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP--- 61
+F+ L S+ ++A+ M T++Q IP +L GRD +G A TGSGKT+AF P
Sbjct: 43 KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102
Query: 62 MLTKWSEDPQGMFGI-VLTPTRELAMQI---AEQFTAFGSAMNIRVAIVVGGESIVQQAI 117
+L P+ GI V+TPTRELA+QI A + F S IV+GG + Q+A
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEAE 159
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSI 177
+L K + +IATPGRL H+ N+ K +K L++DEAD +L F ++ + I
Sbjct: 160 KLMKGVNMLIATPGRLLDHLQNTKGFVF---KNLKALIIDEADRILEIGFEDEMRQIIKI 216
Query: 178 LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP 237
LP ++ RQ++LF+AT T +V+ L+ G P+F V DN + LE Y++
Sbjct: 217 LPNED-RQSMLFSATQTTKVEDLARISLRPG--PLFINVVPETDN-STADGLEQGYVVCD 272
Query: 238 EHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
+ L+ L + K I+F++ + + L +D+ V LH + QQ+RTN
Sbjct: 273 SDKRFLLLFSFLKRNQ--KKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTN 330
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI-XXXXXXXXXXXXXES 356
+ F +LI TDVA+RGLDIP V+ ++ +D P +P +I +S
Sbjct: 331 TFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKS 390
Query: 357 LCFVTEKDI 365
L F+T ++
Sbjct: 391 LMFLTPNEL 399
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 172 bits (437), Expect = 7e-43
Identities = 129/442 (29%), Positives = 207/442 (46%), Gaps = 26/442 (5%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+ + G S + +N++ +PT+IQ IP I GRD IG A TGSGKTIAF PM
Sbjct: 418 TSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMF 477
Query: 64 TKWSEDP-----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIE 118
+ +G I++TPTRELA+QI + F +NIR GG I Q +
Sbjct: 478 RHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIAD 537
Query: 119 LQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL 178
L++ ++ TPGR+ VL++ + L R +LVLDEAD + F + ++ +
Sbjct: 538 LKRGAEIVVCTPGRMID-VLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Query: 179 PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPE 238
P RQ +LF+AT ++AL A + KP T SV + + +E PE
Sbjct: 597 RPD--RQTVLFSATFPRAMEAL--ARKVLKKPVEITVGGRSVVASEVEQIVEVR----PE 648
Query: 239 HVKESYLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERT 296
K S L ++L + ++FV+R +A+ L L S+H Q +R
Sbjct: 649 ESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRD 708
Query: 297 NSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXES 356
+++ ++A VLIAT V +RGLD+ ++LVVNYD P + + ++ +
Sbjct: 709 STISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVA 768
Query: 357 LCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRES---------LM 407
+ F+T + + I + + + T + + L KV A K ++ L
Sbjct: 769 VTFITPEQEKYAVDIAKALKMSKQPVPKELQT-LASQFLEKVKAGKEKAAGGGFGGKGLS 827
Query: 408 AMDKEGFGERRKLQKRKNESKE 429
+D+ ER+ +K E +E
Sbjct: 828 RLDETRNAERKMQRKAYGEDEE 849
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 171 bits (434), Expect = 2e-42
Identities = 137/452 (30%), Positives = 216/452 (47%), Gaps = 42/452 (9%)
Query: 1 MSNSEFKSLGCSK----WL-----VEALNAMK---IVQPTAIQKACIPEILKGRDCIGGA 48
M K GC K W+ ++ LN++K +PT IQ IP I+ GRD IG A
Sbjct: 357 MEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIA 416
Query: 49 NTGSGKTIAFAAPMLT-----KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRV 103
TGSGKTIAF PM + E+ +G +++TPTRELA+QI ++ F + +RV
Sbjct: 417 KTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV 476
Query: 104 AIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILL 163
V GG I +Q EL++ I+ TPGR+ +L + + L+RV ++VLDEAD +
Sbjct: 477 VCVYGGTGISEQIAELKRGAEIIVCTPGRMI-DMLAANSGRVTNLRRVTYVVLDEADRMF 535
Query: 164 TETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNV 223
F + V + P RQ ++F+AT ++AL A + KP EV+
Sbjct: 536 DMGFEPQVMRIVDNVRP--DRQTVMFSATFPRAMEAL--ARRILSKP----IEVQVGGRS 587
Query: 224 AIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRV 283
+ +E +++ E K L ++L S IIFV++ A+ L + L
Sbjct: 588 VVCSDVEQQVIVIEEEKKFLKLLELL-GHYQESGSVIIFVDKQEHADGLLKDLMRASYPC 646
Query: 284 TSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXX 343
SLH + Q +R + + F+ ++L+AT VA+RGLD+ + LVVNY P + + ++
Sbjct: 647 MSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHR 706
Query: 344 XXXXXXXXXXXESLCFVTEKD-------IQRVE----AIEERINKKMEEFTD--VGDTAV 390
+ F+TE I+ +E A+ + K +F D + +
Sbjct: 707 AGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKI 766
Query: 391 IRKSLTKVTAAKRESLMAMDKEGFGERRKLQK 422
I+KS + K ++ ER+KLQK
Sbjct: 767 IKKS--SGFSGKGFKFDETEQALANERKKLQK 796
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 171 bits (433), Expect = 2e-42
Identities = 121/347 (34%), Positives = 183/347 (51%), Gaps = 25/347 (7%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP--- 61
+F L S+ + +A+ M T IQK IP +L GRD +G A TGSGKT+AF P
Sbjct: 90 KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE 149
Query: 62 MLTKWSEDPQGMFG-IVLTPTRELAMQIAEQFTAFGSAMNI------RVAIVVGGESIVQ 114
ML P+ G I+++PTRELA+QI FG A + IV+GG +
Sbjct: 150 MLYALKFKPRNGTGVIIISPTRELALQI------FGVAKELLKYHHQTFGIVIGGANRRA 203
Query: 115 QAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATC 174
+A +L K + ++ATPGRL H+ N+ L+ LV+DEAD +L F ++
Sbjct: 204 EADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRS---LVIDEADRILEIGFEDEMRQI 260
Query: 175 VSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYL 234
+ ILP +N RQ LLF+AT T +V+ D + KP V+S + + LE Y+
Sbjct: 261 MKILPSEN-RQTLLFSATQTTKVE---DLARISLKPGPLYVNVDSGKPTSTVEGLEQGYV 316
Query: 235 LVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQE 294
+V + L+ L ++ +K I+F++ + + + L +D+ V LH + QQ
Sbjct: 317 VVDSDKRFLLLFSFL--KRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQR 374
Query: 295 RTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
RTN+ F +L+ T+VA+RGLDIP V+ +V YD P +P +I
Sbjct: 375 RTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYI 421
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 171 bits (432), Expect = 3e-42
Identities = 128/425 (30%), Positives = 205/425 (48%), Gaps = 34/425 (8%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
S + S ++ +L+ +P IQ IPE G D IG A+TGSGKT+AF P+L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 64 TKW--SEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
+ D + + +V+ PTRELA QI + F + NIRV + GG ++ +Q L K
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNK 241
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL--P 179
PH ++ATPGRL V+N T G K++K LVLDEAD LL ++ ++L+ + IL P
Sbjct: 242 HPHVVVATPGRL-WSVINENNLT-GNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNP 299
Query: 180 PKNKRQNLLFTAT------------MTDQVKALSDAPQTE--------GKPPVFTFEVES 219
+RQ +F+AT M + ++P GKP +S
Sbjct: 300 MHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQS 359
Query: 220 VDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL 279
+ LE P K+ YLY ++ ++F N + + L L
Sbjct: 360 A---VASRVLEGLIECAPAE-KDLYLYYLIMR---YPGKTMVFANGIEDIKRITPFLNEL 412
Query: 280 DVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDT 339
V LH+Q+ Q++R S+++F+ VL+ TDVA+RG+DIP V V++Y +P D
Sbjct: 413 KVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADM 472
Query: 340 FIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFTDVG-DTAVIRKSLTKV 398
++ S+ K++ +++ + R+ KK+E F + D +++ T+V
Sbjct: 473 YVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKIETFINFPVDMSILDILKTRV 532
Query: 399 TAAKR 403
A +
Sbjct: 533 VLAHK 537
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 170 bits (430), Expect = 4e-42
Identities = 125/388 (32%), Positives = 184/388 (47%), Gaps = 24/388 (6%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
S F G + L+ + + QPT IQ +P L GRD IG A TGSGKT AF PML
Sbjct: 134 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 193
Query: 64 T-----KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIE 118
K E G +++ PTREL QI + FG A N+R V GG S+ +QA
Sbjct: 194 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 253
Query: 119 LQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL 178
LQ+ ++ TPGRL HV + L+RV +LV DEAD + F + + S +
Sbjct: 254 LQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 309
Query: 179 PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPE 238
P RQ LLF+AT +++ L+ + P+ V+ A + +L
Sbjct: 310 RP--DRQTLLFSATFRKKIEKLARDILID---PIRV--VQGDIGEANEDVTQIVEILHSG 362
Query: 239 HVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
K ++L + L E S ++FV + AE L LK + LH M Q ER
Sbjct: 363 PSKWNWLTRRLV-EFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV 421
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+ F+ + VL+ATDVA+RGLDIP ++ V+NYD+ + DT +
Sbjct: 422 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 481
Query: 359 FVTEKD-------IQRVEAIEERINKKM 379
+T KD ++ +E + ++K++
Sbjct: 482 LLTPKDSNFAGDLVRNLEGANQHVSKEL 509
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 169 bits (429), Expect = 6e-42
Identities = 111/338 (32%), Positives = 181/338 (52%), Gaps = 16/338 (4%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED 69
G + ++ L + +PT+IQ IP I+ GRD IG A TGSGKT+AF PM +
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQ 369
Query: 70 PQ-----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
P+ G ++L PTRELAMQ ++ F + ++VA GG I +Q +L++
Sbjct: 370 PELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAE 429
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGR+ VL + + L+RV +LVLDEAD + + F + V+ + P +
Sbjct: 430 IVVCTPGRMID-VLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPD--K 486
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
Q +LF+AT ++AL A + KP +SV + + ++ EH K
Sbjct: 487 QTVLFSATFPRHMEAL--ARKVLDKPVEILVGGKSV----VCSDITQNAVICAEHQKFLK 540
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAE-ILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L ++L Y + S I+FV++ A+ I+ + +++ V LH + Q +R +S+ F+
Sbjct: 541 LLELL-GMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFK 599
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+VL+AT VA+RGLD+ + LVVNYD P + + ++
Sbjct: 600 TGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYV 637
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 169 bits (429), Expect = 6e-42
Identities = 111/338 (32%), Positives = 181/338 (52%), Gaps = 16/338 (4%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED 69
G + ++ L + +PT+IQ IP I+ GRD IG A TGSGKT+AF PM +
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQ 369
Query: 70 PQ-----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
P+ G ++L PTRELAMQ ++ F + ++VA GG I +Q +L++
Sbjct: 370 PELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAE 429
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGR+ VL + + L+RV +LVLDEAD + + F + V+ + P +
Sbjct: 430 IVVCTPGRMID-VLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPD--K 486
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
Q +LF+AT ++AL A + KP +SV + + ++ EH K
Sbjct: 487 QTVLFSATFPRHMEAL--ARKVLDKPVEILVGGKSV----VCSDITQNAVICAEHQKFLK 540
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAE-ILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L ++L Y + S I+FV++ A+ I+ + +++ V LH + Q +R +S+ F+
Sbjct: 541 LLELL-GMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFK 599
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+VL+AT VA+RGLD+ + LVVNYD P + + ++
Sbjct: 600 TGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYV 637
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 169 bits (427), Expect = 1e-41
Identities = 129/443 (29%), Positives = 211/443 (47%), Gaps = 35/443 (7%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
N F+ + S+ L++A+ AM QPT IQKACIP L G+D A TG+GKT AFA P+
Sbjct: 217 NLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPV 276
Query: 63 LTKWSEDPQG---MFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
L + P+ +VL PTREL +Q+ NI + VGG + Q L
Sbjct: 277 LERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAAL 336
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ P +IATPGRL H+ N L ++ L+LDEAD +L E F + + + +
Sbjct: 337 RAAPDILIATPGRLIDHLHNCPS---FHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC- 392
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLV--- 236
+ RQ +LF+ATMTD+VK D K PV F + D + L ++ +
Sbjct: 393 -SHHRQTMLFSATMTDEVK---DLASVSLKNPVRIFVNSNTD---VAPFLRQEFIRIRPN 445
Query: 237 PEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERT 296
E +E+ + +LT + ++F A + L + ++V LH + Q +R
Sbjct: 446 REGDREAIVAALLT--RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 503
Query: 297 NSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXES 356
+++RF+ + +L+ATDVA+RGLDI V+ V+N+ +P ++ S
Sbjct: 504 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 563
Query: 357 LCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAK-RESLMAMDKEGFG 415
+ V E + K ++E V + L + K R+ + M+K+ +
Sbjct: 564 VSLVGEDE-----------RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYA 612
Query: 416 ----ERRKLQKRKNESKEKTHRR 434
E + + +++E++ T +R
Sbjct: 613 VLQLEAEEKEMQQSEAQINTAKR 635
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 168 bits (426), Expect = 1e-41
Identities = 136/437 (31%), Positives = 212/437 (48%), Gaps = 23/437 (5%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+ F + S+ L+ A+ + + PT IQ + IP L GRD G A TG+GKT A+ P L
Sbjct: 157 TSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTL 216
Query: 64 TKWSEDPQGMFGI----VLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+ P I VL PTREL Q+ + I V + +GG + Q L
Sbjct: 217 ERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVL 276
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
++ P +IATPGRL H+ N+ T L ++ L+LDEAD +L E F++ + ++
Sbjct: 277 RQNPDIVIATPGRLIDHIKNTPSFT---LDSIEVLILDEADRMLDEYFAEQMKEIINSCC 333
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
RQ +LF+ATM++QVK L A + KP +V +N + L ++ + E
Sbjct: 334 --KTRQTMLFSATMSEQVKDL--AAVSLDKP----IKVFVNNNQQVAFNLRQEFIRIRED 385
Query: 240 VKESYLYQILTSE--KYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
KE IL S + C++FV A L L L VR LH + QQ+R
Sbjct: 386 -KEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLE 444
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL 357
S+++F+ + VLIATDVA+RGLDI V+ V+N+ +P + +I S+
Sbjct: 445 SLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISV 504
Query: 358 CFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGER 417
EK+ + V+ I + ++ + +I K K+T+ + E +D+E
Sbjct: 505 SLAGEKERKIVKDIIKNAESTIK--NRIIPPEIIEKYRNKLTSLEPEIQNILDEE--QAE 560
Query: 418 RKLQKRKNESKEKTHRR 434
R+L K + + KT R+
Sbjct: 561 RQLAKTE-QQLSKTERK 576
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 167 bits (424), Expect = 2e-41
Identities = 109/378 (28%), Positives = 192/378 (49%), Gaps = 17/378 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F ++G + L+ + A +P+AIQ+ I +I+KGRD I + +G+GKT F+ +L
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ ++L PTRELA+QI + A G MN++ +GG ++ + +L H
Sbjct: 100 LDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHV 159
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
+ TPGR+ + T + +K LVLDEAD +L + F + + LPP Q
Sbjct: 160 VAGTPGRVFDMIRRRSLRT----RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--Q 213
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYL 245
+L +AT+ ++ +++ T+ P + + + TLE +E +
Sbjct: 214 VVLISATLPHEILEMTNKFMTD--PIRILVKRDEL-------TLEGIKQFFVAVEREEWK 264
Query: 246 YQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+ L + + +IF N + L ++ + V+S+H MPQ+ER + ++ FR
Sbjct: 265 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
+ A+RVLI+TDV +RGLD+P V L++NYD+P N + +I ++ FV
Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 384
Query: 364 DIQRVEAIEERINKKMEE 381
DI+ + IE+ + +++E
Sbjct: 385 DIRILRDIEQYYSTQIDE 402
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 167 bits (422), Expect = 4e-41
Identities = 121/367 (32%), Positives = 182/367 (48%), Gaps = 19/367 (5%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+ F G + L++A+ + QPT IQ +P L GRD IG A TGSGKT AF PML
Sbjct: 269 TSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPML 328
Query: 64 TKWSEDPQ-----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIE 118
+ Q G G++L PTREL++QI + FG N+ V GG S +Q+
Sbjct: 329 MHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKA 388
Query: 119 LQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL 178
L++ I+ATPGR+ V + L+RV FLVLDEAD + F + + + +
Sbjct: 389 LEQGAEIIVATPGRMIDMVKMKATN----LRRVTFLVLDEADRMFHMGFEPQVRSICNHV 444
Query: 179 PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPE 238
P RQ L+F+AT +++ L+ ++ PV V+ N A ++ Y+
Sbjct: 445 RPD--RQCLMFSATFKKRIERLARDVLSD---PVRI--VQGDLNEANQDITQSVYVFPNP 497
Query: 239 HVKESYLYQILTSEKYV-KSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
K ++L L K++ + S +IFV + V AE + L + LH M Q +R
Sbjct: 498 LQKWNWLLCHLV--KFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNK 555
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL 357
+ +F+ + +L+ATDVA+RGLDIP + VVNYD + +T +
Sbjct: 556 VITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAY 615
Query: 358 CFVTEKD 364
VT+KD
Sbjct: 616 TLVTDKD 622
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 166 bits (420), Expect = 6e-41
Identities = 120/384 (31%), Positives = 186/384 (48%), Gaps = 47/384 (12%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT---------K 65
++E ++ +PT IQ+ IP L+ RD IG A TGSGKT AF P+L +
Sbjct: 402 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDR 461
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
E QG + I+L PTRELA QI E+ FG + IR V+GG S Q L+
Sbjct: 462 IEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 521
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK-- 183
+IATPGRL ++ E+ L R ++VLDEAD ++ F D+ + +P N+
Sbjct: 522 VIATPGRL----IDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 577
Query: 184 ----------------------RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVD 221
RQ ++FTATM V+ L+ ++ + P + +
Sbjct: 578 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLA---RSYLRRPAVVY----IG 630
Query: 222 NVAIP-KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLD 280
+ P + +E L+ E K L IL E+ IIFVN+ ++L ++L+ +
Sbjct: 631 SAGKPHERVEQKVFLMSESEKRKKLLAIL--EQGFDPPIIIFVNQKKGCDVLAKSLEKMG 688
Query: 281 VRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340
+LH Q++R ++ +A A +L+ATDVA RG+DI V +VVNYD+ N + +
Sbjct: 689 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 748
Query: 341 IXXXXXXXXXXXXXESLCFVTEKD 364
I ++ F+T++D
Sbjct: 749 IHRIGRTGRAGKSGVAITFLTKED 772
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 166 bits (420), Expect = 6e-41
Identities = 120/384 (31%), Positives = 186/384 (48%), Gaps = 47/384 (12%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT---------K 65
++E ++ +PT IQ+ IP L+ RD IG A TGSGKT AF P+L +
Sbjct: 402 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDR 461
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
E QG + I+L PTRELA QI E+ FG + IR V+GG S Q L+
Sbjct: 462 IEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 521
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK-- 183
+IATPGRL ++ E+ L R ++VLDEAD ++ F D+ + +P N+
Sbjct: 522 VIATPGRL----IDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKP 577
Query: 184 ----------------------RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVD 221
RQ ++FTATM V+ L+ ++ + P + +
Sbjct: 578 DTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLA---RSYLRRPAVVY----IG 630
Query: 222 NVAIP-KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLD 280
+ P + +E L+ E K L IL E+ IIFVN+ ++L ++L+ +
Sbjct: 631 SAGKPHERVEQKVFLMSESEKRKKLLAIL--EQGFDPPIIIFVNQKKGCDVLAKSLEKMG 688
Query: 281 VRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340
+LH Q++R ++ +A A +L+ATDVA RG+DI V +VVNYD+ N + +
Sbjct: 689 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 748
Query: 341 IXXXXXXXXXXXXXESLCFVTEKD 364
I ++ F+T++D
Sbjct: 749 IHRIGRTGRAGKSGVAITFLTKED 772
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 166 bits (419), Expect = 8e-41
Identities = 114/381 (29%), Positives = 188/381 (48%), Gaps = 23/381 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F +G + L+ + A +P+AIQ+ +P ILK RD I A +G+GKT F+ +L
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQS 87
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ ++L+PTRELA+QI + A G MN++ +GG ++ + +L H
Sbjct: 88 LDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHV 147
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
+ TPGR+ + T + +K LVLDEAD +L + F + L LPP Q
Sbjct: 148 VSGTPGRVFDMIRRRNLRT----RAIKLLVLDEADEMLNKGFKEQLYDIYRYLPP--GAQ 201
Query: 186 NLLFTATMTDQV-----KALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
+L +AT+ ++ K ++D + K T E VA+ + L+
Sbjct: 202 VVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID--- 258
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
LY LT + ++F N + L +K + V+S+H M Q++R ++
Sbjct: 259 ----LYDTLTI-----TQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMK 309
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFV 360
FRA RVLI+TDV +RGLD+P V LV+NYD+P N + +I ++ FV
Sbjct: 310 EFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
Query: 361 TEKDIQRVEAIEERINKKMEE 381
+ D++ + IE+ + +++E
Sbjct: 370 KQDDVRILRDIEQYYSTQIDE 390
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 166 bits (419), Expect = 8e-41
Identities = 121/348 (34%), Positives = 178/348 (50%), Gaps = 21/348 (6%)
Query: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
M+N F SL S+ A+ M T IQ I +L+G+D +G A TGSGKT+AF
Sbjct: 86 MTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLI 145
Query: 61 P---MLTKWSEDPQGMFG-IVLTPTRELAMQ---IAEQFTAFGSAMNIRVAIVVGGESIV 113
P +L K P+ G IV+ PTRELA+Q +AE+ S V++V+GG +
Sbjct: 146 PAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQT---VSMVIGGNNRR 202
Query: 114 QQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLAT 173
+A + + +IATPGRL H+ N+ K +K LV+DEAD +L E F +D+
Sbjct: 203 SEAQRIASGSNLVIATPGRLLDHLQNTKAFIY---KHLKCLVIDEADRILEENFEEDMNK 259
Query: 174 CVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTY 233
+ ILP RQ LF+AT T +VK L+ T PV +V+ + LE Y
Sbjct: 260 ILKILP--KTRQTALFSATQTSKVKDLARVSLTS---PVHV-DVDDGRRKVTNEGLEQGY 313
Query: 234 LLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQ 293
+VP K+ + I +K + ++F + + + +K DV V+ +H M Q
Sbjct: 314 CVVPS--KQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQN 371
Query: 294 ERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
RT + F +L+ TDVA+RGLDIP V+ ++ YD P P +I
Sbjct: 372 RRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYI 419
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 165 bits (418), Expect = 1e-40
Identities = 108/355 (30%), Positives = 185/355 (51%), Gaps = 39/355 (10%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
++ G +++ L + +P++IQ+A IP +L+ +D IG A TGSGKT AF P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 66 WSEDPQ--------GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAI 117
S+ P G + +VL PTRELA QI + F + R VVGG + +Q+
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSF 370
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSI 177
++ + H ++ATPGRL L+ E + L + ++V+DEAD +L F D+ +S
Sbjct: 371 QMSQGAHIVVATPGRL----LDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSS 426
Query: 178 LPPKN-----------------KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESV 220
LP N +RQ ++F+AT+ +V L+ + E PV ++
Sbjct: 427 LPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIE---PVML----TI 479
Query: 221 DNV--AIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKS 278
N+ A+ + + ++ + K + +IL S ++ IIFVN E + + L +
Sbjct: 480 GNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRF-SPPIIIFVNLKRNIEAIAKQLNA 538
Query: 279 LDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDI 333
+ +LH Q++R ++++ R + A +L+ATD+A RG+DIP V LV+NY++
Sbjct: 539 IGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNM 593
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 165 bits (418), Expect = 1e-40
Identities = 123/393 (31%), Positives = 187/393 (47%), Gaps = 26/393 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML-- 63
F L ++ AL + T IQK CIP LKGRD +G A TGSGKT+AF P++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 64 ---TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
KW+ G+ +V++PTRELA+Q E G + +++GG + ++ E
Sbjct: 101 LYRKKWT-SLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEK-ERL 158
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
R + ++ TPGRL H+ + GL + L+LDEAD +L F L VS LP
Sbjct: 159 SRMNILVCTPGRLLQHIDQAVNFDTSGL---QMLILDEADRILDMGFRTTLDAIVSSLPV 215
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
RQ +LF+AT T VK D + + P F V D + P L YL VP
Sbjct: 216 --HRQTMLFSATQTKSVK---DLARLSLQNPDF-ISVHENDTSSTPSNLNQFYLTVPLTE 269
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL--DVRVTSLHSQMPQQERTNS 298
K L+ + + ++K I+F++ + T + + + + LH + Q RT
Sbjct: 270 KLDILFGFIRT--HLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEV 327
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+F + VL TD+ +RGLD P V+ V+ D P + DT+I +L
Sbjct: 328 TAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALL 387
Query: 359 FV---TEKDIQRVEAIE---ERINKKMEEFTDV 385
+ E ++R+E+ + ERIN K + T +
Sbjct: 388 LLLPSEEAFLKRLESKKIAVERINVKDGKKTSI 420
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 165 bits (418), Expect = 1e-40
Identities = 116/357 (32%), Positives = 184/357 (51%), Gaps = 46/357 (12%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT----- 64
G K +++ ++ + +PT IQ+ IP L+ RD IG A TGSGKT+AF P+L+
Sbjct: 400 GFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSL 459
Query: 65 ----KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
+ + QG + I++ PTRELA QI E+ T FG + IR +VVGG S +Q L+
Sbjct: 460 PKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLR 519
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP- 179
+IATPGRL ++ E+ L + ++VLDEAD ++ F D+ + +P
Sbjct: 520 LGCEIVIATPGRL----IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 575
Query: 180 ----------------------PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEV 217
K RQ ++FTATM V+ L+ +T + P +
Sbjct: 576 TNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLA---RTYLRRPATVY-- 630
Query: 218 ESVDNVAIP-KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTL 276
+ +V P + E ++ E+ K L +IL+ + + IIFVN+ A++L + L
Sbjct: 631 --IGSVGKPTERTEQIVYMMGENDKRKKLMEILS--RKIDPPVIIFVNQKKGADVLAKGL 686
Query: 277 KSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDI 333
+ L +LH Q++R ++ ++ A +L+ATDVA RG+DI V LV+NYD+
Sbjct: 687 EKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDM 743
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 165 bits (417), Expect = 1e-40
Identities = 118/375 (31%), Positives = 190/375 (50%), Gaps = 35/375 (9%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP---- 70
L++A+ +P+ IQ A IP L+ RD IG A TGSGKT AF PML S P
Sbjct: 324 LLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSE 383
Query: 71 ----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFI 126
+G + +V+ PTRELA QI E+ F + RV +VGG+SI +Q +++ + +
Sbjct: 384 ENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIV 443
Query: 127 IATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP-----PK 181
IATPGRL ++ E L + ++VLDEAD ++ F +A + +P P+
Sbjct: 444 IATPGRL----IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPE 499
Query: 182 NKRQNL----------LFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLET 231
N+ + L +F+ATM V+ L+ + + PV V ++ L +
Sbjct: 500 NEEEELDEKKIYRTTYMFSATMPPGVERLA---RKYLRNPV----VVTIGTAGKTTDLIS 552
Query: 232 TYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMP 291
++++ + ++ + Q L E K++ I+FVN + + + L RVT+LH
Sbjct: 553 QHVIMMKESEKFFRLQKLLDELGEKTA-IVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 611
Query: 292 QQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXX 351
Q++R S++ FRA+ VL+ATDV RG+DIP V V+NYD+P + + +
Sbjct: 612 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671
Query: 352 XXXESLCFVTEKDIQ 366
+ F+T D +
Sbjct: 672 KSGVATSFLTLHDTE 686
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 164 bits (416), Expect = 2e-40
Identities = 112/341 (32%), Positives = 177/341 (51%), Gaps = 18/341 (5%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F S +++ +N PT IQK IP I GRD + A TGSGKT AF P+L+K
Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306
Query: 66 WSEDPQGM-FG----IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
EDP + G ++++PTRELA+QI + F +++ IV GG S Q +
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
+ H +IATPGRL V + T + +F+VLDEAD +L FS+D+ ++ +
Sbjct: 367 RGCHVVIATPGRLLDFV----DRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM 422
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
+ + Q L+F+AT ++++ ++ + F + A +T Y V ++
Sbjct: 423 RPEHQTLMFSATFPEEIQRMAGEFLKN-----YVFVAIGIVGGACSDVKQTIYE-VNKYA 476
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
K S L +IL+ + I+FV A+ L L + TS+H Q +R +++
Sbjct: 477 KRSKLIEILSEQA---DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALR 533
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
F+ + +VLIAT VASRGLDI ++ V+NYD+P D ++
Sbjct: 534 DFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYV 574
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 164 bits (415), Expect = 2e-40
Identities = 115/389 (29%), Positives = 188/389 (47%), Gaps = 22/389 (5%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
S F+ + + L+ + A P+A+Q I +I KGRD I A +G+GKT F+ +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
+ ++L+PTRELA+QI A G MN++ +GG S+ +L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ 140
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
H + TPGR+ + T + VK L+LDEAD LL + F + + LPP
Sbjct: 141 HVVSGTPGRVTDMIRRRNLRT----RNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT- 195
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLE--TTYLLVPEHVK 241
Q ++ +AT+ V +++ FT + TLE Y + E K
Sbjct: 196 -QVVVVSATLPQDVLEMTNK---------FTTNPVRILVKRDELTLEGLKQYFIAVE--K 243
Query: 242 ESYLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
E + + L + + +IF N + L ++ + VTS+H +MPQ+ER +
Sbjct: 244 EEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIM 303
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF 359
Q FR +RVLI TD+ +RG+D+ V LV+NYD+P N + +I ++ F
Sbjct: 304 QDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINF 363
Query: 360 VTEKDIQRVEAIEERINKKMEEF-TDVGD 387
VT +D++ + IE+ + ++E ++GD
Sbjct: 364 VTNEDVRILRDIEQYYSTVIDEMPMNIGD 392
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 164 bits (414), Expect = 3e-40
Identities = 119/353 (33%), Positives = 177/353 (49%), Gaps = 27/353 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F G ++E +N +PT +QK IP +L RD + A TGSGKT AF P++
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 184
Query: 66 WSEDPQGMF---------------GIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGG- 109
M +VL+PTRELA+QI ++ T F NI+ AI+ GG
Sbjct: 185 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 244
Query: 110 ESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSK 169
E+ Q L+ H +IATPGRL + E GL ++LVLDEAD +L F
Sbjct: 245 ENYRDQVNRLRAGTHILIATPGRLIDII----EQGFIGLAGCRYLVLDEADRMLDMGFEP 300
Query: 170 DLATCVSI-LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKT 228
+ V +PPK R +F+AT +++ L+ + K V V + + +
Sbjct: 301 QIRKIVGQGMPPKTARTTAMFSATFPKEIQVLA---KDFLKDNYIFLAVGRVGSTS--EN 355
Query: 229 LETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHS 288
+E L V E K S L +IL +E + ++ ++FV A L L +R S+H
Sbjct: 356 IEQRLLWVNEMEKRSNLMEILMNE-HSENLVLVFVETKRGANELAYFLNRQQIRSVSIHG 414
Query: 289 QMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ Q ER +++ FR+ +L+AT VA+RGLDIP V V+NYD+PG+ D ++
Sbjct: 415 DLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYV 467
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 164 bits (414), Expect = 3e-40
Identities = 118/381 (30%), Positives = 187/381 (48%), Gaps = 46/381 (12%)
Query: 17 EALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ----- 71
+A+ + ++PT IQ+ IP L+ RD IG A TGSGKT AF P+L + P+
Sbjct: 314 QAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQE 373
Query: 72 ----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFII 127
G + I++ PTRELA QI E+ FG + I+ V+GG S Q ++L+ +I
Sbjct: 374 HRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVI 433
Query: 128 ATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK---- 183
ATPGRL L+ E+ L + +++LDEAD +L F D+ + +P N
Sbjct: 434 ATPGRL----LDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDT 489
Query: 184 -------------------RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVA 224
RQ ++FTATM+ ++ L A Q +P V + +
Sbjct: 490 DEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERL--ARQYLRRPAVV-----HIGSAG 542
Query: 225 IP-KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRV 283
P + +E +VPE K L ++L S+ + IIFVN+ A++L + L L +
Sbjct: 543 KPTERVEQVVYMVPEDRKRKKLVEVLESQ--FQPPIIIFVNQKKGADMLSKGLTKLGFKP 600
Query: 284 TSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXX 343
T LH Q +R ++Q + + +L+ATDVA RG+D+ V LV+NYD+ + + +
Sbjct: 601 TVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHR 660
Query: 344 XXXXXXXXXXXESLCFVTEKD 364
+++ F+T D
Sbjct: 661 IGRTGRAGKHGKAITFLTPDD 681
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 164 bits (414), Expect = 3e-40
Identities = 118/381 (30%), Positives = 187/381 (48%), Gaps = 46/381 (12%)
Query: 17 EALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ----- 71
+A+ + ++PT IQ+ IP L+ RD IG A TGSGKT AF P+L + P+
Sbjct: 314 QAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQE 373
Query: 72 ----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFII 127
G + I++ PTRELA QI E+ FG + I+ V+GG S Q ++L+ +I
Sbjct: 374 HRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVI 433
Query: 128 ATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK---- 183
ATPGRL L+ E+ L + +++LDEAD +L F D+ + +P N
Sbjct: 434 ATPGRL----LDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDT 489
Query: 184 -------------------RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVA 224
RQ ++FTATM+ ++ L A Q +P V + +
Sbjct: 490 DEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERL--ARQYLRRPAVV-----HIGSAG 542
Query: 225 IP-KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRV 283
P + +E +VPE K L ++L S+ + IIFVN+ A++L + L L +
Sbjct: 543 KPTERVEQVVYMVPEDRKRKKLVEVLESQ--FQPPIIIFVNQKKGADMLSKGLTKLGFKP 600
Query: 284 TSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXX 343
T LH Q +R ++Q + + +L+ATDVA RG+D+ V LV+NYD+ + + +
Sbjct: 601 TVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHR 660
Query: 344 XXXXXXXXXXXESLCFVTEKD 364
+++ F+T D
Sbjct: 661 IGRTGRAGKHGKAITFLTPDD 681
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 164 bits (414), Expect = 3e-40
Identities = 119/353 (33%), Positives = 177/353 (49%), Gaps = 27/353 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F G ++E +N +PT +QK IP +L RD + A TGSGKT AF P++
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 181
Query: 66 WSEDPQGMF---------------GIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGG- 109
M +VL+PTRELA+QI ++ T F NI+ AI+ GG
Sbjct: 182 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 241
Query: 110 ESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSK 169
E+ Q L+ H +IATPGRL + E GL ++LVLDEAD +L F
Sbjct: 242 ENYRDQVNRLRAGTHILIATPGRLIDII----EQGFIGLAGCRYLVLDEADRMLDMGFEP 297
Query: 170 DLATCVSI-LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKT 228
+ V +PPK R +F+AT +++ L+ + K V V + + +
Sbjct: 298 QIRKIVGQGMPPKTARTTAMFSATFPKEIQVLA---KDFLKDNYIFLAVGRVGSTS--EN 352
Query: 229 LETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHS 288
+E L V E K S L +IL +E + ++ ++FV A L L +R S+H
Sbjct: 353 IEQRLLWVNEMEKRSNLMEILMNE-HSENLVLVFVETKRGANELAYFLNRQQIRSVSIHG 411
Query: 289 QMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ Q ER +++ FR+ +L+AT VA+RGLDIP V V+NYD+PG+ D ++
Sbjct: 412 DLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYV 464
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 162 bits (411), Expect = 7e-40
Identities = 128/407 (31%), Positives = 194/407 (47%), Gaps = 21/407 (5%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML-- 63
F+ S +E L +PT IQ+ I L G D +G A TGSGKT+A P+L
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 64 ---TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
KWS D G+ ++++PTRELA+Q A G+ +V+GG + + +
Sbjct: 138 LWRAKWSPD-YGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRIS 196
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
+ I+ TPGRL H+ + + + L+ LVLDEAD +L FSK L + ++ LP
Sbjct: 197 GI-NIIVCTPGRLLQHMDENAQMSCDSLQ---VLVLDEADRMLDMGFSKQLNSIINNLPA 252
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
+ RQ LLF+AT T VK L + PVF E+ + A P L+ +Y++V E
Sbjct: 253 E--RQTLLFSATQTRNVKDLCRVCTND---PVFVSVHENA-SAATPDNLKQSYVIVEEEH 306
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL--DVRVTSLHSQMPQQERTNS 298
K + L+ + + + KS ++FV+ A L L + V L M Q++R +
Sbjct: 307 KINALWSFIEAHRKKKS--LVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIET 364
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+F A VLIATDVASRGLD ++ V+ D P D +I SL
Sbjct: 365 FTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLL 424
Query: 359 FVTEKDIQRVEAIEERINKKMEEFTDVGDT-AVIRKSLTKVTAAKRE 404
V+ + + E+ + +EE D + +R L + A +E
Sbjct: 425 MVSPSQEEAMIGKLEKHSIPIEELKIHPDAMSDVRVKLRAILAESQE 471
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 162 bits (411), Expect = 7e-40
Identities = 119/402 (29%), Positives = 197/402 (48%), Gaps = 68/402 (16%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIP-EILKGRDCIGGANTGSGKTIAFAAPM 62
S + S+ L++++ + +PT IQKAC +G+D IG A TGSGKT+AF P+
Sbjct: 191 SAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI 250
Query: 63 LTKWSEDPQG--------------------MFGIVLTPTRELAMQIAEQFTAFGSAMNIR 102
L + ++ + + +++TPTRELA+Q+ E ++++
Sbjct: 251 LQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVK 310
Query: 103 VAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADIL 162
V +VGG +Q L+++P ++ATPGRL ++++GE + L + F VLDEAD +
Sbjct: 311 VVPIVGGMFSEKQERRLKEKPEIVVATPGRL-WELMSAGEKHLVELHSLSFFVLDEADRM 369
Query: 163 LTETFSKDLATCVSILP----------------------PKNKRQNLLFTATMT------ 194
+ ++L + + +LP PK KRQ +F+AT+
Sbjct: 370 VERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFR 429
Query: 195 DQVKALSDAPQTEGKPPVFTFEVESV-----DNVAIPKTLETTYLLVP----------EH 239
++K S + V + EV S DNVAI L TT +L P E
Sbjct: 430 KKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIID-LTTTSILAPKIEESFIKCEEK 488
Query: 240 VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
K++YLY IL+ + + I+F + LK L + V +L S+M Q+ R S+
Sbjct: 489 EKDAYLYYILSV--HGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSI 546
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
RFRA +LIATD+ +RG+DI V +++Y +P + + ++
Sbjct: 547 DRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYV 588
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 161 bits (407), Expect = 2e-39
Identities = 118/392 (30%), Positives = 199/392 (50%), Gaps = 23/392 (5%)
Query: 9 LGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSE 68
LG S +V+AL++ I + IQKA + ++GRD IG A TG+GKT+AF P++ K +
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 69 ------DPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKR 122
+ +VL PTRELA Q+ ++F SA ++ + GG I QQ +L
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQLDYG 226
Query: 123 PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKN 182
+ TPGR V++ + L V+F+VLDEAD +L F++D+ + LP
Sbjct: 227 VDVAVGTPGR----VIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLP--E 280
Query: 183 KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKE 242
KRQ+++F+ATM +++L+ + P +S +A T TY ++ +
Sbjct: 281 KRQSMMFSATMPSWIRSLTK--KYLNNPLTVDLVGDSDQKLADGIT---TYSIIADSYGR 335
Query: 243 SYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRF 302
+ + L +E CI+F A+ L L + + +LH + Q +R ++ F
Sbjct: 336 ASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGF 394
Query: 303 RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
R +L+ATDVA+RGLD+P V+L+++Y++P N +TF+ ++ ++
Sbjct: 395 RDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQ 454
Query: 363 KDIQRVEAIEERINKKMEEFTDVGDTAVIRKS 394
+ V+ IE + + FT++ AV R S
Sbjct: 455 DQSRAVKIIEREVGSR---FTELPSIAVERGS 483
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 160 bits (406), Expect = 3e-39
Identities = 112/360 (31%), Positives = 169/360 (46%), Gaps = 44/360 (12%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED 69
G + +++ L + +P IQ +P I+ GRDCIG A TGSGKT+ F PML +
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 461
Query: 70 P-----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
P G G+V+ PTREL QI F A+ I V GG + QQ EL++
Sbjct: 462 PPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGR+ +L + I L+RV +LV+DEAD + F + V + P R
Sbjct: 522 IVVCTPGRMI-DILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP--DR 578
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
Q +LF+AT QV+ L A + KP SV N I + +E + PE + S
Sbjct: 579 QTVLFSATFPRQVETL--ARKVLNKPVEIQVGGRSVVNKDITQLVE----IRPESERFSR 632
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRA 304
L ++L E Y K ++FV + + S+ F++
Sbjct: 633 LLELL-GEWYEKGKVLVFV-----------------------------RSQEKSISDFKS 662
Query: 305 QAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD 364
+LIAT VA+RGLD+ +ELVVN+D P + + ++ ++ F++E D
Sbjct: 663 DVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 722
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 160 bits (406), Expect = 3e-39
Identities = 106/335 (31%), Positives = 183/335 (53%), Gaps = 16/335 (4%)
Query: 12 SKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP---MLTKWSE 68
S+ + A+ M + T IQ + +LKGRD +G A TGSGKT+AF P ++ K
Sbjct: 178 SEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRF 237
Query: 69 DPQGMFG-IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFII 127
P+ G I+++PTREL+MQ + + +V+GG + ++ +L K + ++
Sbjct: 238 MPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILV 297
Query: 128 ATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNL 187
ATPGRL H+ NS + K ++ L++DE D +L F ++L +++LP +RQ +
Sbjct: 298 ATPGRLLDHLQNSPDFLY---KNLQCLIIDEVDRILEIGFEEELKQIINLLP--KRRQTM 352
Query: 188 LFTATMTDQVKALSD-APQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLY 246
LF+AT T +++ALS A ++E P++ ++ D + LE Y++ P + L+
Sbjct: 353 LFSATQTARIEALSKLALKSE---PIYVGVHDNQDTATVDG-LEQGYIVCPSEKRLLVLF 408
Query: 247 QILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQA 306
L + K ++F + ++ + +D+ VTS+H + Q +RT + +F
Sbjct: 409 TFLKKNR--KKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAE 466
Query: 307 ARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ +L+ TDVA+RGLDIP V+ +V YD P +P +I
Sbjct: 467 SGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYI 501
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 160 bits (404), Expect = 5e-39
Identities = 117/349 (33%), Positives = 173/349 (49%), Gaps = 33/349 (9%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ G S ++ A+ +PTAIQ +P +L GRD IG A TGSGKT AF PM+
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 66 WSEDPQ-----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
+ P+ G G++ PTRELA QI + F A +RV+ V GG S +Q EL+
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
++ATPGRL + + R +LVLDEAD + F + + V + P
Sbjct: 350 AGCEIVVATPGRLIDMLKMKALT----MMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405
Query: 181 KNKRQNLLFTATMTDQVKAL-----SDAPQ-TEGKPPVFTFEVESVDNVAIPKTLETTYL 234
RQ LLF+ATM +V+ L SD + T G+ + ++ V NV + +L
Sbjct: 406 D--RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWL 463
Query: 235 L--VPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQ 292
L +P + E ++F ++ T + + L +V +LH Q
Sbjct: 464 LEKLPGMIDEG--------------DVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQ 509
Query: 293 QERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
R ++Q+F++ VLIATDVA+RGLDI ++ VVNYDI + D +
Sbjct: 510 ASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHV 558
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 160 bits (404), Expect = 5e-39
Identities = 108/378 (28%), Positives = 187/378 (48%), Gaps = 17/378 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F ++ + L+ + A +P+AIQ+ I I+KGRD I A +G+GKT F+ +L
Sbjct: 28 FNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQS 87
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ + L+PTRELA+QI + A G MN++ + +GG ++ + +L H
Sbjct: 88 LDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHI 147
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
+ TPGR V + + + + +K LVLDEAD +L + F + + LPP Q
Sbjct: 148 VSGTPGR----VFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--Q 201
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYL 245
+L +AT+ ++ ++ T+ P + + + TLE +E +
Sbjct: 202 VVLISATLPHEILEMTSKFMTD--PIRILVKRDEL-------TLEGIKQFFVAVEREEWK 252
Query: 246 YQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+ L + + +IF N + L ++ + V+S+H MPQ+ER ++ FR
Sbjct: 253 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFR 312
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
A +RVLI TDV +RG+D+ V LV+NYD+P N + +I ++ FV
Sbjct: 313 AGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD 372
Query: 364 DIQRVEAIEERINKKMEE 381
DI+ + IE+ + +++E
Sbjct: 373 DIRILRDIEQYYSTQIDE 390
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 159 bits (402), Expect = 8e-39
Identities = 124/417 (29%), Positives = 198/417 (46%), Gaps = 30/417 (7%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+ F SK ++ L + T IQK I L+G+D +G A TGSGKT+AF P+L
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 64 T-----KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIE 118
+W+ G+ ++++PTRELA Q E G + +++GG+ + +A E
Sbjct: 129 EALYRLQWTST-DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA-E 186
Query: 119 LQKRPHFIIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDLATCVSI 177
+ ++ TPGRL H+ ++T+ ++ LVLDEAD +L F+ + +
Sbjct: 187 RINNINILVCTPGRLLQHM----DETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 242
Query: 178 LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP 237
LP KRQ LLF+AT T VK D + K P + + E + P TLE Y++
Sbjct: 243 LP--KKRQTLLFSATQTKSVK---DLARLSLKNPEYVWVHEKA-KYSTPATLEQNYIVCE 296
Query: 238 EHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL--DVRVTSLHSQMPQQER 295
K S LY L S ++K I+F + + L R L V + +LH + Q R
Sbjct: 297 LQQKISVLYSFLRS--HLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRR 354
Query: 296 TNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXE 355
F + A VL ATD+A+RGLD P V V+ +D P + +T+I E
Sbjct: 355 MEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGE 414
Query: 356 SLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKE 412
+L + + V+ + +++ V + + + L V K ES++A D++
Sbjct: 415 ALLILLPSEKAMVQQL-------LQKKVPVKEIKINPEKLIDV-QKKLESILAQDQD 463
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 159 bits (402), Expect = 8e-39
Identities = 128/481 (26%), Positives = 215/481 (44%), Gaps = 56/481 (11%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
N F+ + S+ +++A + PT IQ+ACIP L G+D A TG+GKT AF P+
Sbjct: 147 NVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPI 206
Query: 63 LTKWSEDPQGMFG---IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
L + P+G +VL PTRELA+Q+ + F + + + V + GG + Q L
Sbjct: 207 LERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAAL 266
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLK---------------------RVKFLVLDE 158
+ P ++ATPGRL H+ NS + ++ + LVLDE
Sbjct: 267 RSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDE 326
Query: 159 ADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVE 218
AD +L E F + + + RQ LLF+ATMT+++ L+ + PV F E
Sbjct: 327 ADRMLEEAFRDQMNELIRLCA--QNRQTLLFSATMTEEIDELASMSLQK---PVKIFINE 381
Query: 219 SVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKS 278
+ D A+ E + + L + + +++ I+FV + ++ L
Sbjct: 382 NTDT-ALKLRQEFIRIRAGRETDREAMVAALVTRTF-QTNTIVFVRTKKDCQRMQILLGL 439
Query: 279 LDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPD 338
L ++V + S + Q +R S+ +F+ VL++TD+ASRGLDI V+ V+N ++P +
Sbjct: 440 LGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIK 499
Query: 339 TFIXXXXXXXXXXXXXESLCFVTE------KDI----------------QRVEAIEERIN 376
+I S+ V E K+I + VEA RI+
Sbjct: 500 QYIHRVGRTARAGKAGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRID 559
Query: 377 KKMEEFTDVGDTAVIRKSL--TKVTAAKRESLMAMDKEGFG-ERRKLQKRKNESKEKTHR 433
+ E + + K L + + AK ++ + + + G R++ K EK +
Sbjct: 560 ELEETIQQIDEEDRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMKESQIEKQRK 619
Query: 434 R 434
R
Sbjct: 620 R 620
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 159 bits (401), Expect = 1e-38
Identities = 114/372 (30%), Positives = 182/372 (48%), Gaps = 30/372 (8%)
Query: 23 KIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED-----PQGM---- 73
K V+PT +Q+ IP +L RD + A TGSGKT AF P+++ +D P+G
Sbjct: 170 KYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVY 229
Query: 74 -FGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGR 132
F ++L+PTRELA QI ++ F ++V + GG I QQ EL++ ++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 133 LAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL--PPKNKRQNLLFT 190
L + E ++ ++FL LDEAD +L F + V + PP+ RQ +LF+
Sbjct: 290 LNDLL----ERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFS 345
Query: 191 ATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYL-LVPEHVKESYLYQIL 249
AT Q++ L+ + + +V V L T + V E K S+L +L
Sbjct: 346 ATFPSQIQRLAADFMSN-------YIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL 398
Query: 250 TSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARV 309
+++ + A+ L L + TS+H QQER +++ F+ +
Sbjct: 399 HAQRETQDKT------KRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPI 452
Query: 310 LIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVE 369
L+ATDVA+RGLDIP V VVN+D+P + D ++ + F E + Q
Sbjct: 453 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 512
Query: 370 AIEERINKKMEE 381
++ E + + +E
Sbjct: 513 SLAELMQEANQE 524
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 158 bits (400), Expect = 1e-38
Identities = 107/338 (31%), Positives = 170/338 (49%), Gaps = 14/338 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT- 64
F+S+G S + + + PT IQ+ IP IL G+D + A TGSGKT F PM
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 65 -KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
K G ++L+PTRELA+Q + G ++ A+++GG+ + Q L + P
Sbjct: 158 LKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENP 217
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
IIATPGRL H + L+ V+++V DEAD L F++ L ++ LP
Sbjct: 218 DIIIATPGRLVHVAVEMSLK----LQSVEYVVFDEADRLFEMGFAEQLQEIIARLP--GG 271
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
Q +LF+AT+ + + A TE P + +V++ N + L+T++ LV E K +
Sbjct: 272 HQTVLFSATLPKLLVEFARAGLTE--PVLIRLDVDTKLN----EQLKTSFFLVREDTKAA 325
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L +L + + ++FV AE L L + V ++S + R ++ +F
Sbjct: 326 VLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFT 385
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
LI TD+A+RGLDIP+++ V+NY P F+
Sbjct: 386 LGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFL 423
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 158 bits (400), Expect = 1e-38
Identities = 119/397 (29%), Positives = 197/397 (48%), Gaps = 43/397 (10%)
Query: 15 LVEALNA----MKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED- 69
L EALN K V+PT +Q+ IP + GRD + A TGSGKT AF P+++ +D
Sbjct: 153 LGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 212
Query: 70 ----PQGMFGI-----VLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
P+G+ G+ +L+PTRELA QI ++ F ++V + GG + QQ EL+
Sbjct: 213 HIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELE 272
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL-- 178
+ ++ATPGRL + +L G + L+ V+FL LDEAD +L F + V +
Sbjct: 273 RGVDILVATPGRL-NDLLERGRVS---LQMVRFLALDEADRMLDMGFEPQIRKIVQQMDM 328
Query: 179 PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP- 237
PP RQ +LF+AT +++ L+ + + F +A+ + +T L+V
Sbjct: 329 PPPGVRQTMLFSATFPREIQRLASDFLSN-----YIF-------LAVGRVGSSTDLIVQR 376
Query: 238 -----EHVKESYLYQILTSEKY-----VKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLH 287
+ K S+L +L +++ ++ ++FV A+ L L T++H
Sbjct: 377 VEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIH 436
Query: 288 SQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXX 347
QQER +++ F+ +L+ATDVA+RGLDIP V VVN+D+P + D ++
Sbjct: 437 GDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 496
Query: 348 XXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFTD 384
+ F + + + + E + + +E D
Sbjct: 497 GRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPD 533
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 157 bits (398), Expect = 2e-38
Identities = 114/381 (29%), Positives = 171/381 (43%), Gaps = 23/381 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + L+ + A +P+AIQ+ I IL RD + A +G+GKT F+ +L K
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ ++L PTRELA QI + A G MN+ +GG + LQ H
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
++ TPGR+ + T V+ VLDEAD +L+ F + +LPP Q
Sbjct: 141 VVGTPGRVHDMIQRRALPT----DAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPT--AQ 194
Query: 186 NLLFTATMTDQV-----KALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
+L +ATM V K + D + K T E VA+ K E
Sbjct: 195 VVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEK----------EEW 244
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
K L + E + +IF N + L L D V+S+H M Q +R +
Sbjct: 245 KLDTLCDLY--ETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMH 302
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFV 360
FR ++R+LI TD+ +RG+D+ V LV+NYD+P N + +I S+ FV
Sbjct: 303 EFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFV 362
Query: 361 TEKDIQRVEAIEERINKKMEE 381
T D++ + IE+ N +EE
Sbjct: 363 TNDDVRMMREIEQFYNTHIEE 383
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 157 bits (397), Expect = 3e-38
Identities = 105/361 (29%), Positives = 185/361 (51%), Gaps = 24/361 (6%)
Query: 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELA 85
+P+AIQ+ I I++G D + A +G+GKT F+ L + + ++L PTRELA
Sbjct: 44 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 103
Query: 86 MQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTI 145
+QI + A M+I+V +GG S V+ A L+ ++ TPGR+ ++ T
Sbjct: 104 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRT- 161
Query: 146 GGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQ 205
++K +LDEAD +L+ F + + ++LPP Q +L +ATM + V ++
Sbjct: 162 ---DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT--QVVLLSATMPNDVLEVT---- 212
Query: 206 TEGKPPVFTFEVESVDNVAIPK---TLETTYLLVPEHVKESYLYQILTS--EKYVKSSCI 260
T + + + + K TLE +E Y Y+ LT + + +
Sbjct: 213 --------TKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAV 264
Query: 261 IFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGL 320
IF N E L L++ V++++S +PQQER ++ FR+ ++R+LI+TD+ +RG+
Sbjct: 265 IFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 324
Query: 321 DIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKME 380
D+ V LV+NYD+P N + +I ++ FVT +D+ + +E+ + ++E
Sbjct: 325 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 384
Query: 381 E 381
E
Sbjct: 385 E 385
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 157 bits (397), Expect = 3e-38
Identities = 105/361 (29%), Positives = 185/361 (51%), Gaps = 24/361 (6%)
Query: 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELA 85
+P+AIQ+ I I++G D + A +G+GKT F+ L + + ++L PTRELA
Sbjct: 44 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 103
Query: 86 MQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTI 145
+QI + A M+I+V +GG S V+ A L+ ++ TPGR+ ++ T
Sbjct: 104 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRT- 161
Query: 146 GGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQ 205
++K +LDEAD +L+ F + + ++LPP Q +L +ATM + V ++
Sbjct: 162 ---DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT--QVVLLSATMPNDVLEVT---- 212
Query: 206 TEGKPPVFTFEVESVDNVAIPK---TLETTYLLVPEHVKESYLYQILTS--EKYVKSSCI 260
T + + + + K TLE +E Y Y+ LT + + +
Sbjct: 213 --------TKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAV 264
Query: 261 IFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGL 320
IF N E L L++ V++++S +PQQER ++ FR+ ++R+LI+TD+ +RG+
Sbjct: 265 IFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 324
Query: 321 DIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKME 380
D+ V LV+NYD+P N + +I ++ FVT +D+ + +E+ + ++E
Sbjct: 325 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 384
Query: 381 E 381
E
Sbjct: 385 E 385
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 157 bits (396), Expect = 4e-38
Identities = 121/395 (30%), Positives = 189/395 (47%), Gaps = 31/395 (7%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64
+F S + L+E + +PT +QK IP + KGRD + A TGSGKT F P+ T
Sbjct: 155 DFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFT 214
Query: 65 KW--------SEDPQGMFG-------IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGG 109
+ E Q + +VL PTRELA QI E+ F +R +V GG
Sbjct: 215 ELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGG 274
Query: 110 ESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSK 169
I Q E+ + ++ATPGRL + +L G+ + L +K+LVLDEAD +L F
Sbjct: 275 APIGNQMREVDRGCDLLVATPGRL-NDLLERGKVS---LANIKYLVLDEADRMLDMGFEP 330
Query: 170 DLATCVSI--LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNV-AIP 226
+ V +P RQ L+F+AT ++ L+ + + + SV V +
Sbjct: 331 QIRHIVEECDMPSVENRQTLMFSATFPVDIQHLA-------RDFLDNYIFLSVGRVGSTS 383
Query: 227 KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSL 286
+ + L V + K+S L +L++E K +IFV A+ L L + + T++
Sbjct: 384 ENITQRILYVDDMDKKSALLDLLSAEH--KGLTLIFVETKRMADQLTDFLIMQNFKATAI 441
Query: 287 HSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXX 346
H Q ER ++ F+A A +L+AT VA+RGLDIP V V+NYD+P + D ++
Sbjct: 442 HGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGR 501
Query: 347 XXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEE 381
+ F + V+ + E +N+ +E
Sbjct: 502 TGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQE 536
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 157 bits (396), Expect = 4e-38
Identities = 113/372 (30%), Positives = 174/372 (46%), Gaps = 43/372 (11%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
S F+S+G ++ L+ A+ PT IQ+ IP +L+GRD +G A TGSGKT AF PM+
Sbjct: 69 SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI 128
Query: 64 --TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
K + ++L+P RELA+Q + F ++R +VGG S+ +Q L
Sbjct: 129 EHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
+P ++ATPGR H + + L ++++V DEAD L F+ L + LP
Sbjct: 189 KPDIVVATPGRFLHLKVEMKLE----LSSIEYVVFDEADRLFEMGFAAQLTEILHALP-- 242
Query: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFT-FEVESVDNVAIP------KTLETTYL 234
RQ LLF+AT+ + L D + + PV +VES + + KT E
Sbjct: 243 TSRQTLLFSATLP---RTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAA 299
Query: 235 LV-------------------------PEHVKESYLYQILTSEKYVKSSCIIFVNRTVTA 269
L+ P+ K + + SE S ++FV
Sbjct: 300 LLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHV 359
Query: 270 EILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVV 329
E + L V+ ++ + Q+ R N + FR +L+ TDVASRG+DIP++ V+
Sbjct: 360 EYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVI 419
Query: 330 NYDIPGNPDTFI 341
NYD P P F+
Sbjct: 420 NYDFPPQPKVFV 431
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 156 bits (395), Expect = 5e-38
Identities = 107/384 (27%), Positives = 179/384 (45%), Gaps = 23/384 (5%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + + L+ + +P+AIQK I G+D I A +G+GKT F+ +L +
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ + +V+ PTRELA QI + +A G +N+ + +GG S+ +L+ H
Sbjct: 91 IDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHV 150
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
++ TPGR+ + + DT R+K VLDEAD +L+ F + +P Q
Sbjct: 151 VVGTPGRVGDMINRNALDT----SRIKMFVLDEADEMLSRGFKDQIYEVFRSMP--QDVQ 204
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPK---TLETTYLLVPEHVKE 242
+L +ATM +V D + P+ + + K TLE K+
Sbjct: 205 VVLLSATMPSEV---LDVTNRFMRNPI---------RILVKKDELTLEGIRQFYINVQKD 252
Query: 243 SYLYQILTSEKYV--KSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
+ + L V + +IF N + L + V+ LH M Q ER ++
Sbjct: 253 EWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMR 312
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFV 360
FR+ ++RVLI TD+ +RG+D+ V LV+NYD+P N + +I ++ FV
Sbjct: 313 EFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFV 372
Query: 361 TEKDIQRVEAIEERINKKMEEFTD 384
TE D ++++ IE ++EE +
Sbjct: 373 TENDARQLKEIESYYTTQIEEMPE 396
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 156 bits (395), Expect = 5e-38
Identities = 115/357 (32%), Positives = 184/357 (51%), Gaps = 49/357 (13%)
Query: 15 LVEALNA----MKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED- 69
L EALN K V+PT +Q+ IP +L+GRD + A TGSGKT AF P+++ +D
Sbjct: 166 LGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 225
Query: 70 ----PQGM-----FGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
P+G ++L+PTRELA QI ++ F ++V + GG I QQ EL+
Sbjct: 226 HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 285
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL-- 178
+ ++ATPGRL + E ++ ++FL LDEAD +L F + V +
Sbjct: 286 RGVDILVATPGRLNDLL----ERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 341
Query: 179 PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDN---VAIPKTLETTYLL 235
PP+ RQ LLF+AT +++ L+ + + N +A+ + +T L+
Sbjct: 342 PPRGVRQTLLFSATFPREIQRLA---------------ADFLANYIFLAVGRVGSSTDLI 386
Query: 236 VP------EHVKESYLYQILTSEKY-----VKSSCIIFVNRTVTAEILRRTLKSLDVRVT 284
V + K S+L +L +++ ++ ++FV A+ L L T
Sbjct: 387 VQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPAT 446
Query: 285 SLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
S+H QQER +++ F++ +L+ATDVA+RGLDIP V VVN+D+P + D ++
Sbjct: 447 SIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 503
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 156 bits (395), Expect = 5e-38
Identities = 121/393 (30%), Positives = 188/393 (47%), Gaps = 31/393 (7%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML- 63
+F SK +AL K V PT +Q+ I L+G+D +G A TGSGKT+AF P+L
Sbjct: 73 KFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLE 132
Query: 64 ----TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
KWS G+ I+++PTRELA QI E G + +++GG+++ + +
Sbjct: 133 HLFMNKWSR-TDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRM 191
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ + +I TPGRL H+ E+ + ++ LVLDEAD L F K L + + P
Sbjct: 192 D-QCNILICTPGRLLQHM---DENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFP 247
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFT----FEVESVDNVAIPKTLETTYLL 235
P RQ LLF+AT T+ V+ D + K PV+ + + KT T L
Sbjct: 248 P--VRQTLLFSATQTNTVQ---DLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLA 302
Query: 236 VPEHVKESYLYQILTS---------EKYVKSSCIIFVNRTVTAEILRRTLKSL--DVRVT 284
VPE +++SY+ L + ++K I+FV A+ L L +
Sbjct: 303 VPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLL 362
Query: 285 SLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXX 344
+L+ + Q R + F ++ V+ +TDVASRGLD P V VV D P + +I
Sbjct: 363 ALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRA 422
Query: 345 XXXXXXXXXXESLCFVTEKDIQ-RVEAIEERIN 376
E L +T + + + A++E++N
Sbjct: 423 GRSARNKTRGECLLVLTPSEEEYMISALKEQLN 455
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 156 bits (394), Expect = 7e-38
Identities = 116/382 (30%), Positives = 185/382 (48%), Gaps = 19/382 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F K L+EA+ + QPT IQ IP L GRD +G A TGSGKT A+ P +
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 326
Query: 66 WSEDP-----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
+ P +G +++ PTRELA+Q+ ++ F NI GG S +Q+ ELQ
Sbjct: 327 IMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQ 386
Query: 121 KR-PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
++ TPGR+ V + + R FLV DEAD + F + + +
Sbjct: 387 NEGAEMVVCTPGRIIDLVKMGATNFL----RTTFLVFDEADRMFDMGFEAQVKSISDHVR 442
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
P RQ L+F+AT +V+ L+ + PV + E + A + +++ +
Sbjct: 443 P--DRQCLMFSATFKQKVERLARDALVD---PVRIVQGEVGE--ANADIEQKVFVMQNQD 495
Query: 240 VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
VK +L + L E +IFV + + +E + + LK D + LH M Q ER ++
Sbjct: 496 VKLHWLIRNLV-EFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENL 554
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF 359
+FR + +++L+ATDVA+RGLDI + V+N+D+ + DT + +
Sbjct: 555 LKFR-KKSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTL 613
Query: 360 VTEKDIQRVEAIEERINKKMEE 381
VTEKDI+ V + + + +E
Sbjct: 614 VTEKDIEMVGHLVKNLESVSQE 635
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 155 bits (393), Expect = 9e-38
Identities = 115/386 (29%), Positives = 189/386 (48%), Gaps = 26/386 (6%)
Query: 9 LGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKW-- 66
LG S +V+AL I + IQKA + ++GRD IG A TG+GKT+AF P++ K
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
Query: 67 -------SEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
++PQ + VL PTRELA Q+ ++F SA ++ + GG I QQ EL
Sbjct: 181 FNAKHGRGKNPQCL---VLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMREL 235
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ TPGR+ + + L V+F+VLDEAD +L F++D+ + LP
Sbjct: 236 NYGIDVAVGTPGRIIDLMKRGALN----LSEVQFVVLDEADQMLQVGFAEDVEIILQKLP 291
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
K RQ+++F+ATM +++L+ + P +S +A T+ Y + +
Sbjct: 292 AK--RQSMMFSATMPSWIRSLTK--KYLNNPLTIDLVGDSDQKLADGITM---YSIAADS 344
Query: 240 VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
+ + L E CI+F A+ L L + +LH + Q +R ++
Sbjct: 345 YGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTL 403
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF 359
FR +L+ATDVA+RGLD+P V+LV++Y++P N +TF+ ++
Sbjct: 404 AGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILI 463
Query: 360 VTEKDIQRVEAIEERINKKMEEFTDV 385
+ + V+ IE+ + + E +
Sbjct: 464 HGQDQTRAVKMIEKEVGSRFNELPSI 489
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 155 bits (393), Expect = 9e-38
Identities = 111/343 (32%), Positives = 170/343 (49%), Gaps = 17/343 (4%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64
EF+ G +++ + +PTAIQ P + GRD +G A TGSGKT+A+ P +
Sbjct: 151 EFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVV 210
Query: 65 KWSEDPQ-----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+ P+ G +VL PTRELA QI + FGS ++R + GG QQA +L
Sbjct: 211 HINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDL 270
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
++ +IATPGRL + E LKR +LVLDEAD +L F + + +
Sbjct: 271 ERGVEIVIATPGRLIDFL----ERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIR 326
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
P RQ L+++AT +V+ L++ E + S+ A L+ + E+
Sbjct: 327 PD--RQVLMWSATWPKEVRQLAE----EFLNNYIQVNIGSLSLSANHNILQIVDVC-DEN 379
Query: 240 VKESYLYQILTS-EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
K L ++LT ++ IIFV + + R + R ++H QQER
Sbjct: 380 EKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFV 439
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ FR +L+ATDVA+RGLD+ V+ V+NYD P N + ++
Sbjct: 440 LSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYV 482
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 155 bits (391), Expect = 1e-37
Identities = 106/324 (32%), Positives = 166/324 (50%), Gaps = 15/324 (4%)
Query: 23 KIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ--GMFGIVLTP 80
K +PT IQ P +L G+D +G A TGSGKT AF P ++ D + G+ +V++P
Sbjct: 131 KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISP 190
Query: 81 TRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNS 140
TRELA QI + + ++ V GG +Q I+L K+ ++ATPGRL +
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQL-KKSQVVVATPGRLLDLLQEG 249
Query: 141 GEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKAL 200
D L +V +LVLDEAD +L + F +D+ + +KRQ L+FTAT +V+ L
Sbjct: 250 SVD----LSQVNYLVLDEADRMLEKGFEEDIKNIIRETDA-SKRQTLMFTATWPKEVREL 304
Query: 201 SDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILT---SEKYVKS 257
+ T P+ + + D + K + +V KE L ++L S
Sbjct: 305 AS---TFMNNPI-KVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNE 360
Query: 258 SCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVAS 317
+IF A + R LK V ++H + QQ+RT ++ F++ + +L+ATDVA+
Sbjct: 361 KVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAA 420
Query: 318 RGLDIPIVELVVNYDIPGNPDTFI 341
RGLDIP V+ V+N P + ++
Sbjct: 421 RGLDIPNVKTVINLTFPLTVEDYV 444
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 155 bits (391), Expect = 1e-37
Identities = 108/345 (31%), Positives = 174/345 (50%), Gaps = 25/345 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ +G +++E + +PT IQ P +KGRD IG A TGSGKT+++ P +
Sbjct: 101 FRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVH 160
Query: 66 WSEDPQ-----GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
+ P G +VL PTRELA+QI ++ + FGS+ I+ + GG Q +LQ
Sbjct: 161 VNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQ 220
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
K +IATPGRL ++ E L+RV +LVLDEAD +L F + VS + P
Sbjct: 221 KGVEIVIATPGRL----IDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESV----DNVAIPKTLETTYLLV 236
RQ L ++AT +V+ LS F + V ++ + + ++
Sbjct: 277 D--RQTLYWSATWPKEVEQLSKK---------FLYNPYKVIIGSSDLKANRAIRQIVDVI 325
Query: 237 PEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERT 296
E K + L ++L + S ++F++ + + R L+ S+H Q ER
Sbjct: 326 SESQKYNKLVKLL-EDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD 384
Query: 297 NSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ FR+ + ++ ATDVA+RGLD+ V+ V+NYD PG+ + ++
Sbjct: 385 WVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 429
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 154 bits (390), Expect = 2e-37
Identities = 117/396 (29%), Positives = 192/396 (47%), Gaps = 31/396 (7%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF S L+E + + +PT +QK +P + GRD + A TGSGKT F P+L
Sbjct: 142 TEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVL 201
Query: 64 TKWSE-------DPQGMF--------GIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVG 108
++ + + QG F +++ PTRELA QI ++ F ++ +V G
Sbjct: 202 SESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYG 261
Query: 109 GESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFS 168
G I Q E+++ ++ATPGRL + +L G+ + L VK+LVLDEAD +L F
Sbjct: 262 GSPIGNQLREIERGCDLLVATPGRL-NDLLERGKIS---LANVKYLVLDEADRMLDMGFE 317
Query: 169 KDLATCVSI--LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNV-AI 225
+ V + P +RQ L+F+AT ++ L+ + + + SV V +
Sbjct: 318 PQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLA-------RDFLSDYIFLSVGRVGST 370
Query: 226 PKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTS 285
+ + L V K+S L +L++ +IFV A+ L L + R T+
Sbjct: 371 SENITQKVLYVENQDKKSALLDLLSAS--TDGLTLIFVETKRMADQLTDFLIMQNFRATA 428
Query: 286 LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXX 345
+H Q ER ++ FR+ AA +L+AT VA+RGLDIP V V+NYD+P + D ++
Sbjct: 429 IHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIG 488
Query: 346 XXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEE 381
+ F ++ V+ + E + + +E
Sbjct: 489 RTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQE 524
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 154 bits (390), Expect = 2e-37
Identities = 113/349 (32%), Positives = 181/349 (51%), Gaps = 22/349 (6%)
Query: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
M+N F+SL S +++ M + T IQ IP ++ G D +G A TGSGKT+AF
Sbjct: 151 MTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLI 210
Query: 61 P---MLTKWSEDPQGMFGI-VLTPTRELAMQ---IAEQFTAFGSAMNIRVAIVVGGESIV 113
P +L + P+ G+ V+ PTRELA+Q +A++ + S V V+GGE
Sbjct: 211 PAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQ---TVGKVIGGEKRK 267
Query: 114 QQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGL-KRVKFLVLDEADILLTETFSKDLA 172
+A L K + ++ATPGRL H+ E+T G + K +KFLV+DEAD +L + F +DL
Sbjct: 268 TEAEILAKGVNLLVATPGRLLDHL----ENTNGFIFKNLKFLVMDEADRILEQNFEEDLK 323
Query: 173 TCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETT 232
+++LP RQ LF+AT + +V+ L+ T PV+ +V+ + LE
Sbjct: 324 KILNLLP--KTRQTSLFSATQSAKVEDLARVSLTS---PVY-IDVDEGRKEVTNEGLEQG 377
Query: 233 YLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQ 292
Y +VP ++ +L L K ++F + + + + + + + Q
Sbjct: 378 YCVVPSAMRLLFLLTFL-KRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQ 436
Query: 293 QERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+RT + +F +L+ T+VA+RGLD P V+ +V YD P NP +I
Sbjct: 437 NKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYI 485
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 154 bits (390), Expect = 2e-37
Identities = 117/387 (30%), Positives = 188/387 (48%), Gaps = 23/387 (5%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64
+F + ++++ + PTAIQ P + G + +G A TGSGKT+ + P +
Sbjct: 140 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV 199
Query: 65 KWSEDP-----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+ G +VL PTRELA QI + T FGS+ +R V GG Q +L
Sbjct: 200 HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 259
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
Q+ +IATPGRL L++G LKR +LVLDEAD +L F + VS +
Sbjct: 260 QRGCEIVIATPGRLIDF-LSAGSTN---LKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR 315
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
P RQ L+++AT +VK L++ + + S++ ++ + + E
Sbjct: 316 PD--RQTLMWSATWPKEVKQLAE----DFLGNYIQINIGSLE-LSANHNIRQVVDVCDEF 368
Query: 240 VKESYLYQIL-----TSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQE 294
KE L +L TSE K IIFV + L R ++S VR ++H Q E
Sbjct: 369 SKEEKLKTLLSDIYDTSESPGK--IIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSE 426
Query: 295 RTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXX 354
R ++ FR+ + +L+ATDVA+RGLD+ ++ V+N+D P N + +I
Sbjct: 427 RDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKG 486
Query: 355 ESLCFVTEKDIQRVEAIEERINKKMEE 381
S F T+ + ++ +A+ + + + +E
Sbjct: 487 TSFAFFTKNNAKQAKALVDVLREANQE 513
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 154 bits (389), Expect = 2e-37
Identities = 114/351 (32%), Positives = 177/351 (49%), Gaps = 30/351 (8%)
Query: 6 FKSLGCSKWLVEALNAMK-IVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64
F + K L+E + K IV PTAIQ IP L GRD IG A+TGSGKT+ F P++
Sbjct: 191 FLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
Query: 65 KWSEDP--------QGMFGIVLTPTRELAMQI----AEQFTAFGSA--MNIRVAIVVGGE 110
E +G FG+++ P+RELA QI E F A G A +R + +GG
Sbjct: 251 FCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGV 310
Query: 111 SIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKD 170
I +QA +++ H ++ATPGRL+ + I L+ ++LVLDEAD +L F +
Sbjct: 311 PIGEQAKDVRDGIHIVVATPGRLSDMLTKK----IINLEVCRYLVLDEADRMLDMGFEDE 366
Query: 171 LATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLE 230
+ + K +RQ LLF+ATM +++ + + KP V ++ + + LE
Sbjct: 367 IKSIFYFF--KAQRQTLLFSATMPRKIQFFAKSALV--KPIVVNVGRAGAASLNVLQELE 422
Query: 231 TTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQM 290
E+ L ++L + +IF + V + + L V V S+H
Sbjct: 423 FVR-------SENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGK 475
Query: 291 PQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
Q +R ++ FR VL+ATDVAS+GLD +E V+N+D+P + + ++
Sbjct: 476 DQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYV 526
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 154 bits (388), Expect = 3e-37
Identities = 111/350 (31%), Positives = 173/350 (48%), Gaps = 29/350 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
FK + ++ L I PT IQ IP IL GRD IG A TGSGKT+ F P++
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242
Query: 66 WSEDP--------QGMFGIVLTPTRELAMQ---IAEQFTAF---GSAMNIRVAIVVGGES 111
E +G +G+++ P+RELA Q I E + S+ +R A+ +GG S
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302
Query: 112 IVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDL 171
+ +Q ++ H ++ATPGRL ++ + + L ++L LDEAD ++ F D+
Sbjct: 303 VKEQMETIRHGVHMMVATPGRL----MDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 358
Query: 172 ATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLET 231
T S K +RQ LLF+ATM +++ + + + PV T V ++ E
Sbjct: 359 RTIFSYF--KGQRQTLLFSATMPKKIQNFAKSALVK---PV-TINVGRAGAASLDVIQEV 412
Query: 232 TYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMP 291
Y V E K YL + L +IF + + + L V ++H
Sbjct: 413 EY--VKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD 467
Query: 292 QQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
Q+ERT +++ FR VL+ATDVAS+GLD P ++ V+NYD+P + ++
Sbjct: 468 QEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYV 517
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 153 bits (386), Expect = 6e-37
Identities = 108/393 (27%), Positives = 184/393 (46%), Gaps = 39/393 (9%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
++SLG L++ + + P+ +Q A IP +L G++ + + G+GKT ++ PML
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM 169
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ + GI+L P RELA+QI+ + A VVGG S+ I + H
Sbjct: 170 INSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHV 229
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
++ TPGR+ V E +G L + LV DEAD LL TF + + + +LP ++Q
Sbjct: 230 MVGTPGRIVDLV----EKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLP--REKQ 283
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFT--FEVESVDNVAIPKTLETTYLLVPEHVKES 243
LL++AT P F F + N P + L P VK+
Sbjct: 284 MLLYSATF-----------------PYFVTGFIRRYMKN---PLCINLMKELAPVGVKQF 323
Query: 244 YLYQILTSEKYV----------KSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQ 293
Y Y + SEK + + C+IF N T E+L + + + +HS+M Q+
Sbjct: 324 YTY-VKPSEKLLCLKSLLLRLSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQE 382
Query: 294 ERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXX 353
+R F ++L+ATD+ +RG+D P V+N+DI +P++++
Sbjct: 383 DRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAP 442
Query: 354 XESLCFVTEKDIQRVEAIEERINKKMEEFTDVG 386
++ VT ++ + + IE ++ K++ +D G
Sbjct: 443 GVAISLVTTEEKEMLMDIEAKLGKEISPLSDKG 475
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 152 bits (385), Expect = 7e-37
Identities = 107/327 (32%), Positives = 168/327 (50%), Gaps = 21/327 (6%)
Query: 23 KIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFG-----IV 77
K +PT IQ P + GRD I A TGSGKT+AF P L ++ G +V
Sbjct: 148 KFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLV 207
Query: 78 LTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHV 137
L PTRELA Q+ E F ++ +++ + GG S QA +L++ ++ATPGRL +
Sbjct: 208 LLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFL 267
Query: 138 LNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQV 197
N + +K+ +LVLDEAD +L F + + + P RQ L+F+AT +V
Sbjct: 268 DNGTTN----MKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPD--RQTLMFSATWPKEV 321
Query: 198 KALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILT---SEKY 254
+AL+ Q + V S++ A + +L EH K++ L ++L ++K
Sbjct: 322 RALASDFQKDAA----FLNVGSLELAANHNITQVVDIL-EEHAKQAKLMELLNHIMNQKE 376
Query: 255 VKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATD 314
K+ IIFV A+ L R ++ +H Q ER +Q F+A +++ATD
Sbjct: 377 CKT--IIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATD 434
Query: 315 VASRGLDIPIVELVVNYDIPGNPDTFI 341
VA+RGLD+ ++ V+NYD P N + ++
Sbjct: 435 VAARGLDVDDIKFVINYDYPNNSEDYV 461
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 152 bits (385), Expect = 7e-37
Identities = 131/434 (30%), Positives = 203/434 (46%), Gaps = 34/434 (7%)
Query: 1 MSNSEFKSLG---CSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIA 57
MS ++ SL S +++ + + Q T +Q A IP +L +D A TGSGKT+A
Sbjct: 1 MSRKKWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLA 60
Query: 58 FAAPML---------TKWSEDPQGMFGIVLTPTRELAMQIAE---QFTAFGSAMNIRVAI 105
F PML T W P+ + +V++PTRELA QI+E QF ++ +
Sbjct: 61 FLVPMLEILQRRHKETPWG--PKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQL 118
Query: 106 VVGGESIVQQAIELQKR-PHFIIATPGRLAHHVLNSGEDT--IGGLKRVKFLVLDEADIL 162
+VGG SI + L++ P ++ TPGRL G+D +K ++FLVLDEAD L
Sbjct: 119 IVGGNSIEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRL 178
Query: 163 LTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDN 222
L F + + LP +R+ LF+AT T +V +D + + PV V+ +
Sbjct: 179 LDLGFKTSVNNILGYLP--RQRRTGLFSATQTTEV---TDLIRAGLRNPVLV-SVKEKAS 232
Query: 223 VAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVR 282
V P L+ Y +V +K L + L+S V ++F E L L +
Sbjct: 233 VNTPARLQNFYRIVEPELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPK 292
Query: 283 --VTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340
V +H +M + +R N V++FR VL+ TDV +RGLD+P +E VV +D P +F
Sbjct: 293 RTVLGIHGKM-KNKRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSF 351
Query: 341 IXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKME---EFTDVGDTAVIRKSLTK 397
+ +L F+ + V + +IN+K+E T+ + A K
Sbjct: 352 VHRVGRTARQGNEGNALVFLLPSEDAYVHFL--KINQKVELTKLLTEEAEDADREKKKLP 409
Query: 398 VTAAKRESLMAMDK 411
+ L A DK
Sbjct: 410 AVLDQLHRLQAADK 423
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 152 bits (385), Expect = 7e-37
Identities = 104/338 (30%), Positives = 166/338 (48%), Gaps = 14/338 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+S+G L++ + PT IQ+ IP IL+GRD + A TGSGKT F P+ K
Sbjct: 97 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 156
Query: 66 WS--EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
E +G ++L+PTRELA+Q + G M ++ +V+GG+S+ Q + P
Sbjct: 157 LQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCP 216
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
I+ATPGR H + L ++++V DEAD L F + L + LP +
Sbjct: 217 DVIVATPGRFLHLCVEMDLK----LNSIEYVVFDEADRLFEMGFGEQLNETLHRLP--SS 270
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ ++F+AT+ + + A + P + +VES +P L +L + +
Sbjct: 271 RQTVMFSATLPKLLVEFARAGLND--PVLIRLDVES----KLPDALALKFLYCRPDDRYT 324
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L +L V+S ++F E++ L + S++S + R + +F
Sbjct: 325 ALVVLLKYVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFV 384
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ VLI TDVA+RG+DIP ++ VVN PG P F+
Sbjct: 385 NKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFV 422
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 152 bits (384), Expect = 9e-37
Identities = 113/380 (29%), Positives = 187/380 (48%), Gaps = 31/380 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + + ++ + + +PT +QK IP I + RD + A TGSGKT AF P+L++
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241
Query: 66 -WSEDP---------QGMFG--------IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVV 107
+S+ P G +G +VL PTRELA+QI E+ F +R +V
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301
Query: 108 GGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETF 167
GG I QQ +L++ H ++ATPGRL ++ G+ GL K+LVLDEAD +L F
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLV-DMMERGKI---GLDFCKYLVLDEADRMLDMGF 357
Query: 168 SKDLATCV--SILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAI 225
+ V +PPK R ++F+AT +++ L+ + V V + +
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLA----RDFLDEYIFLAVGRVGSTS- 412
Query: 226 PKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTS 285
+ + + V E K S+L +L + S ++FV A+ L L TS
Sbjct: 413 -ENITQKVVWVEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTS 470
Query: 286 LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXX 345
+H Q++R ++ +FR+ + +L+AT VA+RGLDI V+ V+N+D+P + + ++
Sbjct: 471 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 530
Query: 346 XXXXXXXXXESLCFVTEKDI 365
+ F E++I
Sbjct: 531 RTGRVGNLGLATSFFNERNI 550
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 152 bits (384), Expect = 9e-37
Identities = 116/335 (34%), Positives = 171/335 (50%), Gaps = 23/335 (6%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ--- 71
++EA+ + +PT IQ P LKGRD IG A TGSGKT+A+ P L S P+
Sbjct: 149 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ 208
Query: 72 --GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIAT 129
G ++L PTRELA+QI E+ FG +R + GG Q +L++ +IAT
Sbjct: 209 DDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 268
Query: 130 PGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLF 189
PGRL ++ E LKRV +LVLDEAD +L F + VS + P RQ LL+
Sbjct: 269 PGRL----IDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPD--RQTLLW 322
Query: 190 TATMTDQVKALSDAPQTEGKPPVFTFEVESVD---NVAIPKTLETTYLLVPEHVKESYLY 246
+AT +V+ L A Q P + + S D N +I + +E +VP K + L
Sbjct: 323 SATWPREVETL--ARQFLRDP--YKAIIGSTDLKANQSINQVIE----IVPTPEKYNRLL 374
Query: 247 QILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQA 306
+L + S +IFV + + R L+ ++H Q ER + F++
Sbjct: 375 TLL-KQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 433
Query: 307 ARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ ++ ATDVA+RGLD+ ++ VVNYD P + +I
Sbjct: 434 SPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYI 468
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 152 bits (384), Expect = 9e-37
Identities = 105/380 (27%), Positives = 181/380 (47%), Gaps = 17/380 (4%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+ F +G + ++ + +P+AIQ+ + IL+GRD I A +G+GKT A +
Sbjct: 35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVC 94
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
+ + ++L+PTRELA Q + A G NI+ +GG S+ + +L+
Sbjct: 95 QVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGV 154
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
H + TPGR+ + T + +K L+LDE+D +L+ F + LPP
Sbjct: 155 HVVSGTPGRVCDMIKRRSLRT----RAIKLLILDESDEMLSRGFKDQIYDVYRYLPPD-- 208
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
Q L +AT+ ++ ++ TE P + + + TLE KE
Sbjct: 209 LQVCLVSATLPHEILEMTSKFMTE--PVKILVKRDEL-------TLEGIKQFFVAVEKEE 259
Query: 244 YLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQR 301
+ + L + + +IF N + L ++S + V+S+H MPQ+ER +
Sbjct: 260 WKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNE 319
Query: 302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVT 361
FR+ +RVLI TDV +RG+D+ V LV+NYD+P N + +I ++ FV
Sbjct: 320 FRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 379
Query: 362 EKDIQRVEAIEERINKKMEE 381
DI+ + IE+ + +++E
Sbjct: 380 SDDIKILRDIEQYYSTQIDE 399
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 152 bits (384), Expect = 9e-37
Identities = 108/340 (31%), Positives = 168/340 (48%), Gaps = 24/340 (7%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP---- 70
++E + +PTAIQ P L GRD +G A TGSGKT+A+ P + P
Sbjct: 248 VIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIR 307
Query: 71 -QGMFGIVLTPTRELAMQIAEQFTAFGSAMN--IRVAIVVGGESIVQQAIELQKRPHFII 127
+G +VL PTRELA QI +G IR + GG S V QA +L + II
Sbjct: 308 GEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVII 367
Query: 128 ATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNL 187
ATPGRL + N + L+R +LVLDEAD +L F + + + P RQ +
Sbjct: 368 ATPGRLIDFLENRNTN----LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD--RQVV 421
Query: 188 LFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQ 247
+++AT +V+AL+ + + S+ N++ + + E K L
Sbjct: 422 MWSATWPKEVQALAGDFLND----YIQINIGSM-NLSANHNIRQIVEICTEIEKPQRLVC 476
Query: 248 ILTSEKYVKSS------CIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQR 301
+L +K+S I+FV + E + + +++ TS+H Q ER + ++
Sbjct: 477 LLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKD 536
Query: 302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
FR + +LIATDVASRGLD+ ++ V+NYD P + + ++
Sbjct: 537 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYV 576
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 152 bits (383), Expect = 1e-36
Identities = 113/366 (30%), Positives = 183/366 (49%), Gaps = 19/366 (5%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F G +++ + A +PT IQ P L GRD +G A TGSGKT+++ P +
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174
Query: 66 WSEDP-----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
+ P G +VL PTRELA+QI + + FG + IR V GG QQ +L
Sbjct: 175 INAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLS 234
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
+ +IATPGRL +L G+ LKRV +LVLDEAD +L F + V + P
Sbjct: 235 RGSEIVIATPGRLID-MLEIGKTN---LKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
Query: 181 KNKRQNLLFTATMTDQVKALS-DAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
RQ L+++AT +VK L+ D + V + E+ + N+ + +E +V +
Sbjct: 291 D--RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNIT--QIVE----VVSDF 342
Query: 240 VKESYLYQIL-TSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
K L + L T+ + + +IF + + + + L+ ++H Q+ER
Sbjct: 343 EKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWV 402
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+Q FR + +++ATDVA+RG+D+ + V+NYD+PGN + ++ ++
Sbjct: 403 LQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAIS 462
Query: 359 FVTEKD 364
F TE++
Sbjct: 463 FFTEQN 468
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 152 bits (383), Expect = 1e-36
Identities = 121/344 (35%), Positives = 169/344 (48%), Gaps = 22/344 (6%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64
+F+ G S +V +L +PTAIQ P L GRD +G A TGSGKT++F P L
Sbjct: 88 KFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALV 147
Query: 65 KWSEDPQ------GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIE 118
++D Q G +VL PTREL MQI + F N+R V GG S Q
Sbjct: 148 H-AKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRA 206
Query: 119 LQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL 178
L + +IATPGRL ++ + L RV FLVLDEAD +L F L I+
Sbjct: 207 LHEGAEVVIATPGRL----IDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLR---KII 259
Query: 179 PPKN-KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP 237
P N RQ L+++AT +V+ L+++ E V E E N I + +E +
Sbjct: 260 PKTNANRQTLMWSATWPREVRGLAESYMNEYIQVVVGNE-ELKTNSKIKQIVE----VCS 314
Query: 238 EHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
KE L +L + K K I+F N T + L L +LH Q R
Sbjct: 315 GREKEDKLIGVLDNFKGDK--VIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDK 372
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ FR+ +LIAT+VA RGLD+ V+LV+N+D PG+ + ++
Sbjct: 373 VLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYV 416
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 151 bits (382), Expect = 2e-36
Identities = 120/429 (27%), Positives = 186/429 (42%), Gaps = 67/429 (15%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F S G SK ++ + QPT IQ+ IP IL+ RD +G A TGSGKT AF PM+ K
Sbjct: 139 FPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEK 198
Query: 66 WSEDPQ--GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
G ++L+P+RELAMQ F F +R ++ GG+S+ +Q + P
Sbjct: 199 LKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNP 258
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
IIATPGR H + D LK V+++V DEAD L F + L ++ LP
Sbjct: 259 DVIIATPGRFLHLKVEMNLD----LKSVEYVVFDEADRLFEMGFQEQLNELLASLP--TT 312
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ LLF+AT+ + + A P + + E+ + + LE +L +E+
Sbjct: 313 RQTLLFSATLPNSLVDFVKAGLV--NPVLVRLDAET----KVSENLEMLFLSSKNADREA 366
Query: 244 YLYQIL---------TSEKYVK-------------------------------------- 256
L IL TSE+ K
Sbjct: 367 NLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAA 426
Query: 257 ------SSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVL 310
+ I+FV E + + L+ ++ ++ + Q R + FRA +L
Sbjct: 427 NELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSIL 486
Query: 311 IATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEA 370
+ TDVA+RG+DIP++ V+NY +PG+ F+ + V E ++ +
Sbjct: 487 VVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLD 546
Query: 371 IEERINKKM 379
+E + KK+
Sbjct: 547 LELFLGKKI 555
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 151 bits (382), Expect = 2e-36
Identities = 108/387 (27%), Positives = 183/387 (46%), Gaps = 15/387 (3%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF+ + L++ + +P+ IQ+ IP L G D + A G+GKT AF P+L
Sbjct: 124 NEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
K + + ++L PTRELA+Q ++ +NI+V + GG S+ + L +
Sbjct: 184 EKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV 243
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
H ++ TPGR +L+ + + LK LV+DEAD LL+ F L + LP
Sbjct: 244 HLLVGTPGR----ILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLP--QN 297
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ L+F+AT VKA D + KP + + +D + + T Y E ++
Sbjct: 298 RQFLMFSATFPVTVKAFKD--RHLRKP----YVINLMDQLTLMGV--TQYYAFVEERQKV 349
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+ L S+ + S IIF N E+L + + L +H++M Q R FR
Sbjct: 350 HCLNTLFSKLQINQS-IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFR 408
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
A R L+ TD+ +RG+DI V +V+N+D P ++++ ++ VT +
Sbjct: 409 NGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYE 468
Query: 364 DIQRVEAIEERINKKMEEFTDVGDTAV 390
D ++ E+ + +++ D A+
Sbjct: 469 DRFKMYQTEQELGTEIKPIPSNIDQAI 495
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 150 bits (379), Expect = 4e-36
Identities = 115/377 (30%), Positives = 177/377 (46%), Gaps = 21/377 (5%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT 64
+F L S L K V T +Q A IP L GRD +G A TGSGKT+AF P+L
Sbjct: 72 KFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131
Query: 65 K-----WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
K WS + G+ I+++PTRELA Q G +++GG V E
Sbjct: 132 KLHRERWSPE-DGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKER 190
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ ++ PGRL H+ E +++ L+LDEAD +L F L +S LP
Sbjct: 191 VHEMNILVCAPGRLLQHM---DETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLP 247
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
RQ LLF+AT T +VK L+ + P + E+V A P +L T ++VP
Sbjct: 248 --KHRQTLLFSATQTKKVKDLARLSLRD--PEYISVHAEAV--TATPTSLMQTVMIVPVE 301
Query: 240 VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL--DVRVTSLHSQMPQQERTN 297
K L+ + + ++ S ++F++ + + L + + SLH +M Q++R
Sbjct: 302 KKLDMLWSFI--KTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMG 359
Query: 298 SVQRFRAQAARVLIATDVASRGLDI-PIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXES 356
+F + VL TDV +RGLD V+ VV D P + ++I +S
Sbjct: 360 VYSQF-IERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKS 418
Query: 357 LCFVTEKDIQRVEAIEE 373
L F+T + + +E ++E
Sbjct: 419 LLFLTPSEEKMIEKLQE 435
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 150 bits (378), Expect = 5e-36
Identities = 117/363 (32%), Positives = 178/363 (48%), Gaps = 16/363 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP---M 62
F+S G ++ L + PT IQ P L+ RD + A TGSGKT+ + P +
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496
Query: 63 LTKWSEDPQ-GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
L D + G ++L PTRELA QI ++ FG + I + GG Q EL++
Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER 556
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
++ATPGRL + +L E + ++V LVLDEAD +L F + V+ +PP+
Sbjct: 557 GADIVVATPGRL-NDIL---EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPR 612
Query: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK 241
RQ L++TAT +V+ ++ PV + VD +A K + +VP+ K
Sbjct: 613 --RQTLMYTATWPKEVRKIASDLLVN---PV-QVNIGRVDELAANKAITQYVEVVPQMEK 666
Query: 242 ESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQR 301
E L QIL S++ S IIF + + L R++ +H Q ER + +
Sbjct: 667 ERRLEQILRSQER-GSKVIIFCSTKRLCDHLARSV-GRHFGAVVIHGDKTQGERDWVLNQ 724
Query: 302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVT 361
FR+ + VLIATDVA+RGLDI + +V+NYD P + ++ + F T
Sbjct: 725 FRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFT 784
Query: 362 EKD 364
E+D
Sbjct: 785 EQD 787
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 148 bits (374), Expect = 1e-35
Identities = 104/377 (27%), Positives = 173/377 (45%), Gaps = 15/377 (3%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF+ + L+ + +P+ IQ+ IP L GRD + A G+GKT AF P L
Sbjct: 44 TEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
K + ++L PTRELA+Q ++ G MN++V + GG ++ I L
Sbjct: 104 EKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTV 163
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
H ++ TPGR VL+ + V+DEAD LL+ F+ + +S P
Sbjct: 164 HIVVGTPGR----VLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFP--KN 217
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ L++AT VK D + KP +E+ +D + + T Y + ++
Sbjct: 218 RQISLYSATFPLIVKNFMD--KHLNKP----YEINLMDELTLRGV--TQYYAFVDESQKV 269
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+ L S+ + S IIF N T E+L + + L H++M Q R FR
Sbjct: 270 HCLNTLFSKLQINQS-IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFR 328
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
R L+ +D+ +RG+DI V +V+N+D P N +T++ ++ F++
Sbjct: 329 NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWA 388
Query: 364 DIQRVEAIEERINKKME 380
D + IE + +++
Sbjct: 389 DRFNLYRIENELGTEIQ 405
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 148 bits (374), Expect = 1e-35
Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 31/380 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + + ++ + + +PT +QK IP I RD + A TGSGKT AF P+L++
Sbjct: 180 FSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQ 239
Query: 66 -WSEDP---------QGMFG--------IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVV 107
+++ P G +G +VL PTRELA+QI E+ F +R +V
Sbjct: 240 IYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 299
Query: 108 GGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETF 167
GG I QQ +L++ H ++ATPGRL ++ G+ GL K+LVLDEAD +L F
Sbjct: 300 GGADIGQQIRDLERGCHLLVATPGRLV-DMMERGKI---GLDFCKYLVLDEADRMLDMGF 355
Query: 168 SKDLATCV--SILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAI 225
+ V +PPK R ++F+AT +++ L+ + V V + +
Sbjct: 356 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLA----RDFLDEYIFLAVGRVGSTS- 410
Query: 226 PKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTS 285
+ + + V + K S+L IL + S ++FV A+ L L TS
Sbjct: 411 -ENITQKVVWVEDLDKRSFLLDILGATG-SDSLTLVFVETKKGADSLEDFLYHEGYACTS 468
Query: 286 LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXX 345
+H Q++R ++ +FR+ + +L+AT VA+RGLDI V V+N+D+P + + ++
Sbjct: 469 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIG 528
Query: 346 XXXXXXXXXESLCFVTEKDI 365
+ F EK++
Sbjct: 529 RTGRVGNLGLATSFFNEKNM 548
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 148 bits (374), Expect = 1e-35
Identities = 107/362 (29%), Positives = 174/362 (47%), Gaps = 36/362 (9%)
Query: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
+S + F S ++A+ T +Q+A +P IL+G+D + A TG+GKT+AF
Sbjct: 356 LSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 415
Query: 61 PMLTKWSEDPQG--------MFGIVLTPTRELAMQIA-EQFTAFGSAMNIRVAIVVGGES 111
P + + P + +V+ PTRELA Q A E T +I V +V+GG
Sbjct: 416 PAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTK 475
Query: 112 IVQQAIELQKRP-HFIIATPGRLAHHVLN-SGEDTIGGLKRVKFLVLDEADILLTETFSK 169
+ + +Q P ++ATPGRL H+ N SG T L VK LVLDEAD LL F +
Sbjct: 476 LPTEQRRMQTNPCQILVATPGRLKDHIENTSGFAT--RLMGVKVLVLDEADHLLDMGFRR 533
Query: 170 DLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQT----------EGKPPVFTFEVES 219
D+ ++ +P +RQ LF+AT+ ++V+ + EG +
Sbjct: 534 DIERIIAAVP--KQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQM 591
Query: 220 VDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL 279
++ + ++L+ EH+ ++ Y++ IIF + ++ L L
Sbjct: 592 YMIASLDRHFSLLHVLLKEHIADNVDYKV-----------IIFCTTAMVTRLVADLLSQL 640
Query: 280 DVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDT 339
+ V +HS+ PQ RT FR A +L+ +DV++RG+D P V LVV +P + +
Sbjct: 641 SLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQ 700
Query: 340 FI 341
+I
Sbjct: 701 YI 702
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 148 bits (373), Expect = 2e-35
Identities = 114/366 (31%), Positives = 183/366 (49%), Gaps = 35/366 (9%)
Query: 19 LNAMKIVQPTAIQKACIPEIL---KGRDCIGGANTGSGKTIAFAAPMLTKWSEDP----- 70
+ ++ PT IQ+ IP + + RD +G A+TGSGKT+AF P+L K S P
Sbjct: 189 IQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPS 248
Query: 71 ----QGMFGIVLTPTRELAMQIAEQ------FTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
G ++L PTREL QI ++ + S + +V +VGG S+ + + L
Sbjct: 249 LKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLS 308
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
+ ++ATPGRL ++S E+ + +K+V+ LVLDEAD ++ F + ++ +
Sbjct: 309 EGCDILVATPGRL----IDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDI 364
Query: 181 KN----KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLV 236
RQ L+FTATMT ++ ++ KP T VE+ I + +E
Sbjct: 365 NADSAVNRQTLMFTATMTPVIEKIAAGYMQ--KPVYATIGVETGSEPLIQQVVEYA---- 418
Query: 237 PEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTL-KSLDVRVTSLHSQMPQQER 295
++ ++ + KY IIF+N TA+ L K +++VT LH Q++R
Sbjct: 419 -DNDEDKFKKLKPIVAKY-DPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQR 476
Query: 296 TNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXE 355
+S+Q FR +++IAT+VA+RGLDIP V LVVN+ I D +I
Sbjct: 477 EHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGT 536
Query: 356 SLCFVT 361
++ FV+
Sbjct: 537 AVSFVS 542
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 148 bits (373), Expect = 2e-35
Identities = 106/350 (30%), Positives = 174/350 (49%), Gaps = 29/350 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT- 64
F+ + K ++ L A I PT IQ +P +L GRD IG A TGSGKT+ F P++
Sbjct: 179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMF 238
Query: 65 ----KWS---EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMN------IRVAIVVGGES 111
++S E +G +G+++ P+RELA Q E + + IR + +GG
Sbjct: 239 ALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLP 298
Query: 112 IVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDL 171
+ + + + H ++ATPGRL ++ + I L ++L +DEAD ++ F +D+
Sbjct: 299 VSEALDVISRGVHIVVATPGRL----MDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDV 354
Query: 172 ATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLET 231
T S K +RQ LLF+ATM +++ + + + PV T V ++ T +
Sbjct: 355 RTIFSFF--KGQRQTLLFSATMPKKIQNFARSALVK---PV-TINVGRAGAASMNVTQQV 408
Query: 232 TYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMP 291
Y V + K YL L +IF + + + L V ++H
Sbjct: 409 EY--VKQEAKVVYLLDCLQK---TAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKD 463
Query: 292 QQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
Q+ER+ +V +R VL+ATDVAS+GLD P V+ V+NYD+P + + ++
Sbjct: 464 QEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYV 513
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 147 bits (372), Expect = 2e-35
Identities = 113/379 (29%), Positives = 177/379 (45%), Gaps = 18/379 (4%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + S+ L+ + A +P+AIQ+ I +KG D I A +G+GKT FA +L +
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ-KRPH 124
D + +VL PTRELA QI + A G M +GG ++ + +LQ + PH
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
I+ TPGR V + K +K VLDEAD +L+ F + L +
Sbjct: 154 IIVGTPGR----VFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL--NSNT 207
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
Q +L +ATM V L + P + E + TLE +E +
Sbjct: 208 QVVLLSATMPSDV--LEVTKKFMRDPIRILVKKEEL-------TLEGIRQFYINVEREEW 258
Query: 245 LYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRF 302
L E + +IF+N + L + + D V+++H M Q+ER ++ F
Sbjct: 259 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF 318
Query: 303 RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
R+ ++RVLI TD+ +RG+D+ V LV+NYD+P N + +I ++ VTE
Sbjct: 319 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE 378
Query: 363 KDIQRVEAIEERINKKMEE 381
+D + + IE N +EE
Sbjct: 379 EDKRTLRDIETFYNTSIEE 397
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 147 bits (372), Expect = 2e-35
Identities = 119/382 (31%), Positives = 187/382 (48%), Gaps = 26/382 (6%)
Query: 11 CSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT------ 64
C ++E + +PT IQ P +L+G D IG A TG+GKT+ + P
Sbjct: 249 CYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQP 308
Query: 65 --KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKR 122
K + GM +VLTPTRELA+Q+ + + S +R V GG + +Q EL+K
Sbjct: 309 SLKGQRNRPGM--LVLTPTRELALQVEGECCKY-SYKGLRSVCVYGGGNRDEQIEELKKG 365
Query: 123 PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKN 182
IIATPGRL +++ LK + +LVLDEAD +L F + +L +
Sbjct: 366 VDIIIATPGRLNDLQMSN----FVNLKNITYLVLDEADKMLDMGFEPQIMKI--LLDVRP 419
Query: 183 KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKE 242
RQ ++ +AT V L+ Q+ K P+ + V ++D VA+ +++ ++ E K
Sbjct: 420 DRQTVMTSATWPHSVHRLA---QSYLKEPMIVY-VGTLDLVAV-SSVKQNIIVTTEEEKW 474
Query: 243 SYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRF 302
S++ L S I+FV+R A+ L L ++ V SLH Q++R +++ F
Sbjct: 475 SHMQTFLQSMSST-DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENF 533
Query: 303 RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
+ R+LIATD+ASRGLD+ V V N+D P N + ++ S+ +T
Sbjct: 534 KTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTR 593
Query: 363 KD---IQRVEAIEERINKKMEE 381
D + I ER N+ + E
Sbjct: 594 NDWRVASELINILERANQSIPE 615
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 147 bits (372), Expect = 2e-35
Identities = 111/381 (29%), Positives = 179/381 (46%), Gaps = 17/381 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+ F ++G + L+ + A +P+AIQ+ I KG D I A +G+GKT F + +
Sbjct: 38 HESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGV 97
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKR 122
L + +VL PTRELA QI + A G + ++V VGG S+ + LQ
Sbjct: 98 LQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAG 157
Query: 123 PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKN 182
H ++ TPGR+ + +K VLDEAD +L+ F + +LPPK
Sbjct: 158 VHVVVGTPGRVFDMLKRQSLRA----DNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213
Query: 183 KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKE 242
Q +F+ATM + AL + KP + + + TLE KE
Sbjct: 214 --QVGVFSATMPPE--ALEITRKFMSKPVRILVKRDEL-------TLEGIKQFYVNVEKE 262
Query: 243 SYLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
+ + L E + +IFVN + L ++S D V++ H M Q R ++
Sbjct: 263 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 322
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFV 360
FR+ ++RVLI TD+ +RG+D+ V LV+N+D+P P+ ++ ++ FV
Sbjct: 323 EFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
Query: 361 TEKDIQRVEAIEERINKKMEE 381
T D + + I++ N +EE
Sbjct: 383 TRDDERMLFDIQKFYNVVVEE 403
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 147 bits (371), Expect = 3e-35
Identities = 115/392 (29%), Positives = 186/392 (47%), Gaps = 23/392 (5%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F++ G L+ + + PT IQ P ++GRD + A TGSGKT+ + P
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
Query: 66 W----SEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
++ G +VL+PTRELA QI E+ FG + I + GG Q +L++
Sbjct: 220 LQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLER 279
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
++ATPGRL + +L + L+++ +LVLDEAD +L F + V +P
Sbjct: 280 GADIVVATPGRL-NDILEMRRIS---LRQISYLVLDEADRMLDMGFEPQIRKIVKEIP-- 333
Query: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK 241
KRQ L++TAT V+ ++ A V + +VD + K++ +V K
Sbjct: 334 TKRQTLMYTATWPKGVRKIA-ADLLVNPAQV---NIGNVDELVANKSITQHIEVVAPMEK 389
Query: 242 ESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQR 301
+ L QIL S++ S IIF + + L R L + ++H Q ER N + +
Sbjct: 390 QRRLEQILRSQE-PGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQ 447
Query: 302 FRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVT 361
FR+ VL+ATDVA+RGLD+ + VVNYD P + ++ ++ F
Sbjct: 448 FRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFG 507
Query: 362 EKD-------IQRVEAIEERINKKMEEFTDVG 386
++D I+ +E +R+ ++ E G
Sbjct: 508 DQDSKHASDLIKILEGANQRVPPQIREMATRG 539
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 147 bits (371), Expect = 3e-35
Identities = 105/387 (27%), Positives = 180/387 (46%), Gaps = 15/387 (3%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF+ + L+ + +P+ IQ+ IP L G D + A G+GKT AF P L
Sbjct: 154 NEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTL 213
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
K + + ++L PTRELA+Q ++ + I V + GG S+ + L +
Sbjct: 214 EKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPV 273
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
H ++ TPGR +L+ + + LK LV+DEAD LL+ F + + LP
Sbjct: 274 HLLVGTPGR----ILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLP--ES 327
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
RQ L+F+AT VK+ D + KP + + +D + + T Y E ++
Sbjct: 328 RQILMFSATFPVTVKSFKD--RYLKKP----YIINLMDQLTLMGV--TQYYAFVEERQKV 379
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+ L S+ + S IIF N E+L + + L +H++M Q R FR
Sbjct: 380 HCLNTLFSKLQINQS-IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFR 438
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
A R L+ TD+ +RG+DI V +V+N+D P ++++ ++ VT +
Sbjct: 439 NGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYE 498
Query: 364 DIQRVEAIEERINKKMEEFTDVGDTAV 390
D ++ E+ + +++ + D A+
Sbjct: 499 DRFKMYQTEQELGTEIKPIPSLIDKAI 525
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 147 bits (370), Expect = 4e-35
Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 15/316 (4%)
Query: 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELA 85
+P+ IQ+ IP + GRD + A G+GKT AF P L K + +++ PTRELA
Sbjct: 68 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELA 127
Query: 86 MQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTI 145
+Q ++ G I + GG ++ + L + H ++ TPGR VL+ +
Sbjct: 128 LQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGR----VLDLASRKV 183
Query: 146 GGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQ 205
L ++DEAD +L+ F + +S LPP + Q+LLF+AT VK +
Sbjct: 184 ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH--QSLLFSATFPLTVKEF--MVK 239
Query: 206 TEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNR 265
KP +E+ ++ + + K + Y V E K L + + K + IIF N
Sbjct: 240 HLHKP----YEINLMEELTL-KGITQYYAFVEERQKLHCLNTLFS--KLQINQAIIFCNS 292
Query: 266 TVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIV 325
T E+L + + L H++M QQER FR R L+ +D+ +RG+DI V
Sbjct: 293 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 352
Query: 326 ELVVNYDIPGNPDTFI 341
+V+N+D P +T++
Sbjct: 353 NVVINFDFPKTAETYL 368
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 147 bits (370), Expect = 4e-35
Identities = 99/355 (27%), Positives = 173/355 (47%), Gaps = 15/355 (4%)
Query: 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELA 85
+P+ IQ+A I L G+D + A G+GKT A+ P++ K + + +V+ PTRELA
Sbjct: 65 KPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELA 124
Query: 86 MQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTI 145
+Q ++ + ++V + GG + + L H +IATPGR +L+ E +
Sbjct: 125 LQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGR----ILDLMEKGV 180
Query: 146 GGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQ 205
++ K LVLDEAD LL++ F L ++ LP +RQ +L++AT + V + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLP--KERQVMLYSATFPNTVTSFMQ--K 236
Query: 206 TEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNR 265
KP +E+ ++ + + + Y V E K L + K + IIF N
Sbjct: 237 HMHKP----YEINLMEELTLLGVTQ-YYAFVQEKQKVHCLNTLF--RKLQINQSIIFCNS 289
Query: 266 TVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIV 325
T E+L + + + +HS+M Q R FR R L+ +D+ +RG+DI V
Sbjct: 290 TQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAV 349
Query: 326 ELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKME 380
+V+N+D P N +T++ ++ +T +D + IE+ + ++E
Sbjct: 350 NVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIE 404
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 146 bits (369), Expect = 5e-35
Identities = 121/371 (32%), Positives = 176/371 (46%), Gaps = 25/371 (6%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML- 63
+F L S L E L K +PT IQ A P +L GRD +G A TGSGKT+AF P L
Sbjct: 168 QFDELDVSAKLREGLKNYK--EPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 64 --TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
S++ +V++PTRELA+Q E + N++ +V GG +QA K
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAK 284
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
II TPGRL + + D +V +LVLDEAD +L F +D+ +S P
Sbjct: 285 NASVIIGTPGRLLDLINDGSIDC----SQVGYLVLDEADRMLDTGFEQDIRNIISHTPDP 340
Query: 182 NK---RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPE 238
+ RQ + F+AT + V+AL+ T K PV + S + A + +L
Sbjct: 341 TRNGSRQTVFFSATWPESVRALA---ATFLKDPV-KITIGSDELAASQNITQIVEILDDP 396
Query: 239 HVKESYLYQILTSEKYVKSS-----CIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQ 293
KE L +L K++ S +IFV A + TL + V +H M Q
Sbjct: 397 RSKERMLDNLL--RKHLSSGGKDDKILIFVLYKKEAARVEGTL-ARKYNVVGIHGDMSQG 453
Query: 294 ERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXX 353
R ++ F++ VL+ATDVA+RGLDIP V+LV+N P + ++
Sbjct: 454 ARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTK 513
Query: 354 XESLCFVTEKD 364
++ F T +D
Sbjct: 514 GTAITFFTPQD 524
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 146 bits (368), Expect = 7e-35
Identities = 109/383 (28%), Positives = 185/383 (47%), Gaps = 27/383 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F +G + ++ + +P+ IQ+ + ILKGRD I A +G+GKT A +
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ + + +VL+P+RELA Q + A G+ NI+ +GG+SI + +L++ H
Sbjct: 84 VNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHA 143
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
+ TPGR+ + T K VK LVLDE+D +L++ + LP + Q
Sbjct: 144 VSGTPGRVYDMIKRGSLQT----KAVKLLVLDESDEMLSKGLKDQIYDVYRALP--HDIQ 197
Query: 186 NLLFTATMTDQV-----KALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
L +AT+ ++ K ++D + KP T E ++ Y+ V
Sbjct: 198 VCLISATLPQEILEMTEKFMTDPVRILVKPDELTLE-----------GIKQYYVDVD--- 243
Query: 241 KESYLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
KE + + L + + IIF N + L ++S + V+S+H Q+ER +
Sbjct: 244 KEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDI 303
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+ +FR+ +RVLIA+DV +RG+D+ V V+NYDIP NP+ +I ++
Sbjct: 304 MNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAIN 363
Query: 359 FVTEKDIQRVEAIEERINKKMEE 381
FV D++ ++ IE K+ E
Sbjct: 364 FVKSSDMKDLKDIERHYGTKIRE 386
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 146 bits (368), Expect = 7e-35
Identities = 111/329 (33%), Positives = 164/329 (49%), Gaps = 26/329 (7%)
Query: 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFG---------I 76
+P+ IQ P +L GRD IG A TGSGKT+AF P + + + + G +
Sbjct: 136 KPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCL 195
Query: 77 VLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHH 136
VL+PTRELA+QI++ G ++ V GG S Q ++ +I TPGRL
Sbjct: 196 VLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDL 255
Query: 137 VLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK-RQNLLFTATMTD 195
+ E + L V F+VLDEAD +L F + + IL NK RQ ++F+AT
Sbjct: 256 I----ESNVLRLSDVSFVVLDEADRMLDMGFEEPVRF---ILSNTNKVRQMVMFSATWPL 308
Query: 196 QVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYV 255
V L+ V V+ N + + +E ++ E ++ L +L EKY
Sbjct: 309 DVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIE----VLDERARDQRLIALL--EKYH 362
Query: 256 KSS---CIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIA 312
KS ++F V AE L R L+ + S+H Q ERT S+ F+ + +L+A
Sbjct: 363 KSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVA 422
Query: 313 TDVASRGLDIPIVELVVNYDIPGNPDTFI 341
TDVA+RGLDIP VE+V+NY P + ++
Sbjct: 423 TDVAARGLDIPDVEVVINYTFPLTTEDYV 451
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 145 bits (367), Expect = 9e-35
Identities = 108/334 (32%), Positives = 175/334 (52%), Gaps = 22/334 (6%)
Query: 16 VEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP---MLTKWSEDPQG 72
++A+ M T IQ I +L+GRD + A TGSGKT+AF P ++ K +
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRN 250
Query: 73 MFGI-VLTPTRELAMQIAEQFTAFGSAMNIRV---AIVVGGESIVQQAIELQKRPHFIIA 128
G+ +L+PTRELAMQ F M V +++GG + +A +L + I+A
Sbjct: 251 GTGVLILSPTRELAMQT---FGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVA 307
Query: 129 TPGRLAHHVLNSGEDTIGGL-KRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNL 187
TPGRL H+ N T G + K ++ LV+DEAD +L F ++L + +LP +RQ +
Sbjct: 308 TPGRLLDHMQN----TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP--TRRQTM 361
Query: 188 LFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQ 247
LF+AT T +V+ L A + K P++ + N + LE Y++ P + L+
Sbjct: 362 LFSATQTRKVEDL--ARISLKKEPLYVGVDDDKANATVDG-LEQGYVVCPSEKRFLLLFT 418
Query: 248 ILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAA 307
L + K ++F + ++ + L +D+ V ++H + Q +RT + +F +
Sbjct: 419 FLKKNR--KKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADS 476
Query: 308 RVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
L+ TDVA+RGLDIP V+ +V YD P +P +I
Sbjct: 477 GTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYI 510
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 145 bits (367), Expect = 9e-35
Identities = 101/317 (31%), Positives = 167/317 (51%), Gaps = 14/317 (4%)
Query: 27 PTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAM 86
PT IQ IP L GRD + A+TGSGKT AF P++ + + + ++LTPTRELA+
Sbjct: 226 PTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAI 285
Query: 87 QIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTI 145
QI Q S + ++ ++VGG + Q LQ+ IIATPGRL + S +
Sbjct: 286 QIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELC 345
Query: 146 GGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQ 205
G VK +V+DEAD +L F + + + +P N Q +L +AT+ ++ L A Q
Sbjct: 346 G----VKIVVVDEADTMLKMGFQQQVLDILENIP--NDCQTILVSATIPTSIEQL--ASQ 397
Query: 206 TEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNR 265
P +++ + + + L V + K+ L++IL +K K ++FV+
Sbjct: 398 LLHNPVRIITGEKNLPCANVRQII----LWVEDPAKKKKLFEILNDKKLFKPPVLVFVDC 453
Query: 266 TVTAEILRRTLKSL-DVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPI 324
+ A++L ++ + ++ S+HS+ Q ER N ++ V+++T V RGLD+
Sbjct: 454 KLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLIS 513
Query: 325 VELVVNYDIPGNPDTFI 341
V LVVN+D+P + D ++
Sbjct: 514 VRLVVNFDMPSSMDEYV 530
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 145 bits (366), Expect = 1e-34
Identities = 106/377 (28%), Positives = 180/377 (47%), Gaps = 21/377 (5%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMF 74
L+ A+ P+ +Q+ CIP+ + G D + A +G GKT F L + +
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVS 121
Query: 75 GIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQ---KRPHFIIATP 130
+VL TRELA QI ++ F + ++R A+ GG +I Q + K PH ++ATP
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATP 181
Query: 131 GRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSILPPKNKRQNLLF 189
GRL V + I + VK VLDE D LL +D+ PP+ +Q ++F
Sbjct: 182 GRLNALV----REKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQ--KQVMMF 235
Query: 190 TATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIP-KTLETTYLLVPEHVKESYLYQI 248
+AT++++++ + E+ D + L+ Y+ + E K + +
Sbjct: 236 SATLSNEIRPICKKFMQN------PLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDL 289
Query: 249 LTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAAR 308
L S ++ + +IFV A L R L+ + +H +PQ+ER + F+ R
Sbjct: 290 LDSLEF--NQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347
Query: 309 VLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF-VTEKDIQR 367
+ +ATDV RG+DI V +V+NYD+P +PD+++ ++ F +E+D Q
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQI 407
Query: 368 VEAIEERINKKMEEFTD 384
++ I+ER + E D
Sbjct: 408 LDKIQERFEVNITELPD 424
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 145 bits (366), Expect = 1e-34
Identities = 105/325 (32%), Positives = 165/325 (50%), Gaps = 22/325 (6%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP---------QGMFGIVL 78
T +QK IP IL GRD + A TGSGKT AF P+L D Q I++
Sbjct: 312 TPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIV 371
Query: 79 TPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVL 138
PTREL QI + F +R ++ GG + ++ + + + ATPGRL +
Sbjct: 372 APTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDII- 430
Query: 139 NSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSI--LPPKNKRQNLLFTATMTDQ 196
G++ IG LK++K+LVLDEAD +L F ++ +S +P K +RQ L+F+AT ++
Sbjct: 431 --GKEKIG-LKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEE 487
Query: 197 VKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVK 256
++ L+ E + F A + ++ T L V + K L +IL + +
Sbjct: 488 IQRLA----AEFLKSNYLFVAVGQVGGAC-RDVQQTVLQVGQFSKREKLVEILRNIGDER 542
Query: 257 SSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVA 316
+ ++FV A+ + L + TS+H Q+ER ++ FR VL+AT VA
Sbjct: 543 T--MVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVA 600
Query: 317 SRGLDIPIVELVVNYDIPGNPDTFI 341
+RGLDI V+ V+N+D+P D ++
Sbjct: 601 ARGLDIENVQHVINFDLPSTIDEYV 625
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 144 bits (363), Expect = 3e-34
Identities = 119/438 (27%), Positives = 205/438 (46%), Gaps = 61/438 (13%)
Query: 2 SNSEFKSLGCSKWLVEALNA-MKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
+++ F LG L+ +N +K+ T++QK IP +L+GRD + + TGSGKT+A+
Sbjct: 228 TSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCI 287
Query: 61 PMLTKWS------EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMN-IRVAIVVGGESIV 113
P++ + G + +VL PTRELA+Q + I +++GGE
Sbjct: 288 PVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRK 347
Query: 114 QQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLAT 173
+ L+K + +I+TPGRL H+ ++ R+++LV DEAD +L F KD+
Sbjct: 348 SEKARLRKGINILISTPGRLVDHIKSTKNI---HFSRLRWLVFDEADRILDLGFEKDITV 404
Query: 174 CVSILPPK-NKRQNLLFTATMTDQVKALSD------------------------APQTEG 208
++ + + KRQN+L +AT+T+ V L+D A Q
Sbjct: 405 ILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVC 464
Query: 209 KPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK----ESYLYQILTSEKYVK-----SSC 259
PP + +D+ AIP++L+ +VP ++ +++ Q E+ K SSC
Sbjct: 465 PPPA----GDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSC 520
Query: 260 -IIFVNRTVTAEIL----------RRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAAR 308
++ + ++ + L + S+ ++ LH M Q+ERT Q F
Sbjct: 521 ELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRG 580
Query: 309 VLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRV 368
VL+ TDVA+RGLD+P V +V Y+ P +P +I SL + + + V
Sbjct: 581 VLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYV 640
Query: 369 EAI-EERINKKMEEFTDV 385
++ +IN + D+
Sbjct: 641 NSLASHKINVSEIKMEDI 658
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 144 bits (363), Expect = 3e-34
Identities = 111/381 (29%), Positives = 178/381 (46%), Gaps = 17/381 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+ F ++G + L+ + A +P+AIQ+ I KG D I A +G+GKT F + +
Sbjct: 38 HESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGV 97
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKR 122
L + +VL PTRELA QI + A G ++V VGG S+ + LQ
Sbjct: 98 LQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAG 157
Query: 123 PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKN 182
H ++ TPGR+ + +K VLDEAD +L+ F + +LPPK
Sbjct: 158 VHVVVGTPGRVFDMLRRQSLRP----DCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213
Query: 183 KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKE 242
Q +F+ATM + AL + KP + + + TLE KE
Sbjct: 214 --QVGVFSATMPPE--ALEITRKFMSKPVRILVKRDEL-------TLEGIKQFYVNVEKE 262
Query: 243 SYLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
+ + L E + +IFVN + L ++S D V++ H M Q R ++
Sbjct: 263 DWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 322
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFV 360
FR+ ++RVLI TD+ +RG+D+ V LV+N+D+P P+ ++ ++ FV
Sbjct: 323 EFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
Query: 361 TEKDIQRVEAIEERINKKMEE 381
T D + + I++ N +EE
Sbjct: 383 TLDDQRMLFDIQKFYNVVVEE 403
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 144 bits (362), Expect = 3e-34
Identities = 101/334 (30%), Positives = 164/334 (48%), Gaps = 34/334 (10%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQG--------MFGIVLT 79
T +Q+A +P ILKG+D + A TG+GKT+AF P + + P + +V+
Sbjct: 78 TVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVIC 137
Query: 80 PTRELAMQIA-EQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP-HFIIATPGRLAHHV 137
PTRELA Q A E T +I V +V+GG + + +Q P ++ATPGRL H+
Sbjct: 138 PTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHI 197
Query: 138 LNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQV 197
N+ LK VK LVLDEAD LL F KD+ +S +P +RQ LF+AT+ ++V
Sbjct: 198 ENT-PGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVP--KERQTFLFSATVPEEV 254
Query: 198 KALSDAPQTEGKPPVFTFEVESVDN----------VAIPKTLETTYLLVPEHVKESYLYQ 247
+ + V +++ ++ + Y L+ EH+ + Y+
Sbjct: 255 RQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYK 314
Query: 248 ILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAA 307
+ I+F + +++ L L++ V +HS+ PQ RT FR
Sbjct: 315 V-----------IVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKG 363
Query: 308 RVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+L+ +DV++RG+D P V LV+ +P + + +I
Sbjct: 364 LILVTSDVSARGVDYPDVTLVLQVGLPKDREQYI 397
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 143 bits (361), Expect = 4e-34
Identities = 105/351 (29%), Positives = 167/351 (46%), Gaps = 26/351 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP---M 62
F+S+ KWL A+ A + T +Q IP LK +D + A TGSGKT+A+ P
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQI--------AEQFTAFGSAMNIRVAIVVGGESIVQ 114
+T+ D G+ +++ PTRELA QI A Q + + + +GG+ +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 115 Q--AIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLA 172
A +K P +I TPGRL + + K ++ L+LDEAD L+ F + L
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEMLSHISS------KHLEILILDEADTLIDMGFQRTLQ 176
Query: 173 TCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETT 232
+ +S LP +R+ LF+ATM D V + V + P +L
Sbjct: 177 SIISQLP--KQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQ 234
Query: 233 YLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKS--LDVRVTSLHSQM 290
L++P K + +L + +Y K+ I+F + + E + L + +LH Q
Sbjct: 235 SLVIPPIYKVQCMIHLLCTIEYEKA--IVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQ 292
Query: 291 PQQERTNSVQRF-RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340
Q R+ + ++F ++ VL TD+ASRGLDIP V+ V+ D P +P +F
Sbjct: 293 VQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 143 bits (361), Expect = 4e-34
Identities = 113/380 (29%), Positives = 181/380 (46%), Gaps = 24/380 (6%)
Query: 13 KWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP-- 70
+++++ L +PT IQ P L GRD +G A TGSGKT+A+ P + + P
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 160
Query: 71 ---QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFII 127
G +VL PTRELA Q+ + +G ++ + GG Q +L++ I
Sbjct: 161 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 220
Query: 128 ATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNL 187
ATPGRL L SG+ L+R +LVLDEAD +L F + V + P RQ L
Sbjct: 221 ATPGRLIDF-LESGKTN---LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD--RQTL 274
Query: 188 LFTATMTDQVKALS-DAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLY 246
+++AT +V+ L+ D + + V E+ + N+ + ++ +H K L
Sbjct: 275 MWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNIL--QIVDVCMESEKDH-KLIQLM 331
Query: 247 QILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQA 306
+ + +EK K+ IIFV + L R ++ +H Q ER + FR+
Sbjct: 332 EEIMAEKENKT--IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389
Query: 307 ARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQ 366
A +LIATDVASRGLD+ V+ V+NYD P + + ++ + F T +++
Sbjct: 390 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 449
Query: 367 R-------VEAIEERINKKM 379
+ +E + IN K+
Sbjct: 450 QARELIKVLEEANQAINPKL 469
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 143 bits (360), Expect = 6e-34
Identities = 111/359 (30%), Positives = 177/359 (48%), Gaps = 35/359 (9%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ----GMFG-----IVL 78
T IQ+ +P + +G D + A TGSGKT AF P++T+ +D G G I+L
Sbjct: 365 TPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIIL 424
Query: 79 TPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVL 138
TPTRELA QI + F + + V GG ++ +++K I+ T GR+ H
Sbjct: 425 TPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFC- 483
Query: 139 NSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSI--LPPKNKRQNLLFTATMTD 195
E+ L + +F VLDEAD ++ F D+ T V+ +P K RQ L+F+AT D
Sbjct: 484 ---EEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPD 540
Query: 196 QVKALSDAPQTEGKPPVFTFEVESVDNV-AIPKTLETTYLLVPEHVKESYLYQIL----- 249
V+ + A E + + ++D + A K + + K+ L ++L
Sbjct: 541 SVQEAARAFLREN------YVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGIDID 594
Query: 250 ------TSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
++E Y K + ++FV++ A+ L L S V ++H Q+ER+ ++++FR
Sbjct: 595 SYTTEKSAEVYTKKT-MVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR 653
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
+ VLIAT VA RGLDI V+ V+NYD+P N D +I + F++E
Sbjct: 654 NGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFISE 712
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 143 bits (360), Expect = 6e-34
Identities = 108/361 (29%), Positives = 182/361 (49%), Gaps = 35/361 (9%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGR-DCIGGANTGSGKTIAFAAPMLTKW---SEDP 70
++EA+ M +PT IQ A +P ++ R D +G A TGSGKT+AF P++ + S+D
Sbjct: 166 VLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDS 225
Query: 71 Q--------GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGG-ESIVQQAIELQK 121
Q G +++ PTREL +QI + A S + +VGG + Q+ I Q+
Sbjct: 226 QETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQ 285
Query: 122 RPHFIIATPGRLAHHVLNSGE--DTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL- 178
RP ++ATPGRL ++ E + + K +K LV+DE D ++ E + +L ++ +
Sbjct: 286 RPDIVVATPGRL-WAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIH 344
Query: 179 --PPKNKRQNLLFTATMT------------DQVKALSDAPQTEGKPPVFTFEVESVDNVA 224
K K Q L+F+AT+T + K LS + + + +
Sbjct: 345 EESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVID 404
Query: 225 IPKTLETTYLLVPEHVKESYLYQILTSEKYVKSS----CIIFVNRTVTAEILRRTLKSLD 280
+ + + T LV + L + TS Y+ + I+FVN A L LKS++
Sbjct: 405 LTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVLKSVN 464
Query: 281 VRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340
+ LH++M Q++R ++++F VL+ATDVA+RGLDI ++ V++Y +P + +
Sbjct: 465 IDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKVEIY 524
Query: 341 I 341
I
Sbjct: 525 I 525
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 143 bits (360), Expect = 6e-34
Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 29/350 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
FK + + +++ L IVQPT IQ +P IL GRD IG A TGSGKT+ F PM+
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 66 WSEDP--------QGMFGIVLTPTRELAMQ---IAEQFTA---FGSAMNIRVAIVVGGES 111
++ +G G+++ P+RELA Q + EQF A +R + +GG
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGID 267
Query: 112 IVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDL 171
+ Q +++ H ++ATPGRL + L ++L LDEAD L+ F D+
Sbjct: 268 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMS----LDACRYLTLDEADRLVDLGFEDDI 323
Query: 172 ATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLET 231
K++RQ LLF+ATM +++ + + KP N+ + + +E
Sbjct: 324 REVFDHF--KSQRQTLLFSATMPTKIQIFARSALV--KPVTVNVGRAGAANLDVIQEVE- 378
Query: 232 TYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMP 291
V + K YL + L +IF + + L V ++H
Sbjct: 379 ---YVKQEAKIVYLLECLQK---TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKD 432
Query: 292 QQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
Q++R ++ F+A VL+ATDVAS+GLD P ++ V+NYD+P + ++
Sbjct: 433 QEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 482
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 142 bits (359), Expect = 7e-34
Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 16/332 (4%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT-----KWSED 69
L++A+ + T IQ I +L+G+D + A TGSGKT+AF P + W +
Sbjct: 79 LLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQH 138
Query: 70 PQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIAT 129
G I+++PTREL+MQ + N+ +V+GG + + +L K ++AT
Sbjct: 139 -NGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVAT 197
Query: 130 PGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLF 189
PGRL H+ N+ + + +K L++DEAD +L F ++ + LP +RQ++LF
Sbjct: 198 PGRLLDHLQNTDNFLV---RNMKCLIIDEADRILDIGFEIEMQQVLRHLP--KQRQSMLF 252
Query: 190 TATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQIL 249
+AT + +V L PV E + + + L+ Y++ P + L+ L
Sbjct: 253 SATHSPKVDELVKLALHSN--PVRVSVHEKAEEATV-EGLQQGYIVAPSDKRLLLLFTFL 309
Query: 250 TSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARV 309
K K ++F + + + L +D+ S+H + QQ+RT + +F +
Sbjct: 310 KKNKTKK--VMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGI 367
Query: 310 LIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
L+ TDVA+RGLDIP V+ +V YD P +I
Sbjct: 368 LLCTDVAARGLDIPAVDWIVQYDPTDEPREYI 399
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 142 bits (359), Expect = 7e-34
Identities = 106/362 (29%), Positives = 173/362 (47%), Gaps = 36/362 (9%)
Query: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
+S + F S ++ + T +Q+A +P IL+G+D + A TG+GKT+AF
Sbjct: 77 LSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLL 136
Query: 61 PMLTKWSEDPQG--------MFGIVLTPTRELAMQIA-EQFTAFGSAMNIRVAIVVGGES 111
P + + P + +V+ PTRELA Q A E +I V +V+GG
Sbjct: 137 PSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTK 196
Query: 112 IVQQAIELQKRP-HFIIATPGRLAHHVLN-SGEDTIGGLKRVKFLVLDEADILLTETFSK 169
+ + LQK P ++ATPGRL H+ N SG T L VK LVLDEAD LL F +
Sbjct: 197 LPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFAT--RLMGVKVLVLDEADHLLDMGFRR 254
Query: 170 DLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQT----------EGKPPVFTFEVES 219
++ ++ +P +RQ LF+AT++D+V+ + EG +
Sbjct: 255 EIERIIAAVP--KQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQM 312
Query: 220 VDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL 279
++ + Y L+ +H+ ++ Y++ IIF + ++ L L
Sbjct: 313 YMIASLDRHFSLLYGLLKKHITDNVGYKV-----------IIFCTTAMVTRLVADLLGKL 361
Query: 280 DVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDT 339
+ V +HS+ PQ RT FR + +L+ +DV++RG+D P V LVV +P + +
Sbjct: 362 SLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQ 421
Query: 340 FI 341
+I
Sbjct: 422 YI 423
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 142 bits (358), Expect = 1e-33
Identities = 108/392 (27%), Positives = 184/392 (46%), Gaps = 24/392 (6%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+S+ L+ + + P++IQ I +I+ G+D I A +G+GKT F +
Sbjct: 22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGL 81
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKR 122
L + + ++L+PTRELA QI + G MN+ + GG+++ ++QK
Sbjct: 82 LQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
Query: 123 P-HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET--FSKDLATCVSILP 179
+ TPGR+ + T + V+ LVLDEAD LL+ET F + + + LP
Sbjct: 142 GCQAVSGTPGRVLDMIKKQMLQT----RNVQMLVLDEADELLSETLGFKQQIYDIFAKLP 197
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
Q ++ +ATM + L + P + + + +LE V
Sbjct: 198 --KNCQVVVVSATMNKDI--LEVTRKFMNDPVKILVKRDEI-------SLEGIKQYVVNV 246
Query: 240 VKESYLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
KE + + L + + C+IF N + L + L + V S+H M Q+ER
Sbjct: 247 DKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDK 306
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL 357
+ FR +RVLI+TDV +RG+D+ V LV+NYD+P + +I ++
Sbjct: 307 VMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAI 366
Query: 358 CFVTEKDIQRVEAIEE----RINKKMEEFTDV 385
F+T+ D+ ++ IE+ +IN F ++
Sbjct: 367 NFITKADLAKLREIEKFYSIKINPMPANFAEL 398
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 142 bits (358), Expect = 1e-33
Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 28/391 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ G ++++ + + PT IQ+ P + GRD +G + TGSGKT+++ P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 66 WSEDP-----QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
+ P G +VL PTRELA+QI ++ T FG + IR V GG Q +L
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
+ IATPGRL +L+S + L+RV +LVLDEAD +L F + V + P
Sbjct: 244 RGVEICIATPGRLLD-MLDSNKTN---LRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
RQ ++F+AT +V+ L+ + V S+D +A ++ +V
Sbjct: 300 D--RQTVMFSATWPKEVQRLARDYLND----YIQVTVGSLD-LAASHNIKQIVEVVDNAD 352
Query: 241 KESYLYQILTSEKYVK---SSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
K + L + + E+ +K + +IF A+ + R L+ ++H Q ER
Sbjct: 353 KRARLGKDI--EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDW 410
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL 357
+ FR + +++ATDVASRG+D+ + V NYD PGN + ++ +
Sbjct: 411 VLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAY 470
Query: 358 CFVTEKDIQRVEAI-------EERINKKMEE 381
+ T + ++ + ++ I+ K+EE
Sbjct: 471 TYFTSDNAKQARELVSILSEAKQDIDPKLEE 501
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 142 bits (358), Expect = 1e-33
Identities = 103/328 (31%), Positives = 161/328 (48%), Gaps = 23/328 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F +G + L+ + A +P+AIQ+ IP ILK RD I A +G+GKT F+ +L
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQS 87
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ ++L+PTRELA+QI + A G MN++ +GG ++ + +L H
Sbjct: 88 LDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHV 147
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
+ TPGR+ + T + +K LVLDEAD +L + F + L LPP Q
Sbjct: 148 VSGTPGRVFDMIRRRNLRT----RAIKLLVLDEADEMLNKGFKEQLYDIYRYLPP--GAQ 201
Query: 186 NLLFTATMTDQV-----KALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
+L +AT+ ++ K ++D + K T E VA+ + L+
Sbjct: 202 VVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID--- 258
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
LY LT + ++F N + L +K + V+S+H M Q++R ++
Sbjct: 259 ----LYDTLTI-----TQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMK 309
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELV 328
FRA RVLI+TDV +RGLD+P V LV
Sbjct: 310 EFRAGTTRVLISTDVWARGLDVPQVSLV 337
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 142 bits (358), Expect = 1e-33
Identities = 108/361 (29%), Positives = 165/361 (44%), Gaps = 19/361 (5%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWS-- 67
GC +++ L + +PT IQ+ IP +L GR+C A TGSGKT AF PML K
Sbjct: 147 GCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVL 206
Query: 68 ---EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
G+ ++L+P RELA Q A + N + ++ + +V+ A +
Sbjct: 207 NCRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMT--KPLVKTADFSKLWCD 264
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
+I+TP RL + D L +V++LVLDE+D L ++ K + CV
Sbjct: 265 VLISTPMRLKRAIKAKKID----LSKVEYLVLDESDKLFEQSLLKQI-DCVVKACSNPSI 319
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
LF+AT+ D V+ L+ + + + N A + E K
Sbjct: 320 IRSLFSATLPDSVEELARSIMHDAVRVII-----GRKNTASETVKQKLVFAGSEEGKLLA 374
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRA 304
L Q + +IFV A+ L LK ++R +HS +P ER N+V +FRA
Sbjct: 375 LRQSFAES--LNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRA 432
Query: 305 QAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD 364
VLIATDV +RG+D + V+NYD P + +I E++ F TE+D
Sbjct: 433 GEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 492
Query: 365 I 365
+
Sbjct: 493 V 493
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 142 bits (358), Expect = 1e-33
Identities = 114/381 (29%), Positives = 183/381 (47%), Gaps = 28/381 (7%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML--TKWSEDPQG 72
++E + M +P+ IQ P +L+G D IG A TG+GKT+AF P + T++ P+G
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRG 353
Query: 73 MFG----IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIA 128
G +VL PTRELA+QI + + S ++ V GG + Q +L++ II
Sbjct: 354 TRGGANVLVLAPTRELALQIEMEVKKY-SFRGMKAVCVYGGGNRNMQISDLERGAEIIIC 412
Query: 129 TPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLL 188
TPGRL ++ + D + + +LVLDEAD +L F + + + P RQ ++
Sbjct: 413 TPGRLNDLIMANVID----VSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD--RQTIM 466
Query: 189 FTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQI 248
+AT V+ L+ Q+ K P+ V S+D A + L+ + K +
Sbjct: 467 TSATWPPGVRRLA---QSYMKNPIQVC-VGSLDLAATHSVKQIIKLMEDDMDK----FNT 518
Query: 249 LTSEKYVKS-----SCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+TS +VK+ IIF R V A+ L L +H Q +R ++ +
Sbjct: 519 ITS--FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIK 576
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
+ R+L+ATDVASRGLDI + V+NYD P N + ++ S+ F T +
Sbjct: 577 SGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTRE 636
Query: 364 DIQRVEAIEERINKKMEEFTD 384
D + + E + + +E D
Sbjct: 637 DWAMAKELIEILQEAEQEVPD 657
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 142 bits (357), Expect = 1e-33
Identities = 112/359 (31%), Positives = 174/359 (48%), Gaps = 35/359 (9%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ----GMFG-----IVL 78
T IQ+ +P I +G D + A TGSGKT AF P++ + ++ G G I+L
Sbjct: 576 TPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIIL 635
Query: 79 TPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVL 138
TPTREL QI + F + + V GG ++ +++K I+ T GR+ H
Sbjct: 636 TPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFC- 694
Query: 139 NSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSI--LPPKNKRQNLLFTATMTD 195
E+ L + +F VLDEAD ++ F D+ T V+ +P K RQ L+F+AT D
Sbjct: 695 ---EEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPD 751
Query: 196 QVKALSDAPQTEGKPPVFTFEVESVDNV-AIPKTLETTYLLVPEHVKESYLYQIL----- 249
V+ + EG + + ++D + A K + + K+ L +IL
Sbjct: 752 SVQEAARNHLKEG------YIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDID 805
Query: 250 ------TSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
SE Y K + I+FV++ A+ L L S V ++H Q+ER+ ++++FR
Sbjct: 806 SYTTEKNSEVYTKKT-IVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFR 864
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
+ VLIAT VA RGLDI V+ V+NYD+P N D +I + F++E
Sbjct: 865 NGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISE 923
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 142 bits (357), Expect = 1e-33
Identities = 107/388 (27%), Positives = 181/388 (46%), Gaps = 23/388 (5%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF+ + L+ + +P+ IQ+ IP L GRD + A G+GKT AF P+L
Sbjct: 131 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 190
Query: 64 TKWSEDPQGMFG-IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKR 122
K +D + G VL T ++ ++ G + I+V + GG S+ + L +
Sbjct: 191 EKIDQDNNVIQGNCVLDHTSQVCKEL-------GKHLKIQVMVTTGGTSLKDDIMRLYQP 243
Query: 123 PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKN 182
H ++ TPGR +L+ + + LK LV+DEAD LL++ F + +S LP
Sbjct: 244 VHLLVGTPGR----ILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP--E 297
Query: 183 KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKE 242
RQ L+F+AT VK D T + + +D + + K + Y V E K
Sbjct: 298 SRQILMFSATFPVTVKDFKDRFLTN------PYVINLMDELTL-KGITQFYAFVEERQKI 350
Query: 243 SYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRF 302
L + + + +S IIF N E+L + + L +H++M Q R F
Sbjct: 351 HCLNTLFSKLQINQS--IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDF 408
Query: 303 RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
R A R L+ TD+ +RG+DI V +V+N+D P N +T++ ++ +T
Sbjct: 409 RNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITY 468
Query: 363 KDIQRVEAIEERINKKMEEFTDVGDTAV 390
+D + IE+ + ++++ D A+
Sbjct: 469 EDRFNLYRIEQELGTEIKQIPPHIDQAI 496
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 142 bits (357), Expect = 1e-33
Identities = 102/377 (27%), Positives = 187/377 (49%), Gaps = 15/377 (3%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + + L+ + +P+AIQ+ I ++GRD I A +G+GKT F+ +L +
Sbjct: 18 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 77
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ ++L PTRELA QI A G M + +GG ++ + A L+ H
Sbjct: 78 IDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHV 137
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
++ TPGR+ + ++N + + +K VLDEAD +L+ F + +LPP Q
Sbjct: 138 VVGTPGRV-YDMINR---KVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPP--DVQ 191
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLV-PEHVKESY 244
+L +ATM V +S + + E +++ + + Y+ V E+ K
Sbjct: 192 VILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGI------KQFYVNVKQENWKLGT 245
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRA 304
L + + +S +IF N + L + + + V+++H M Q++R +++FR+
Sbjct: 246 LCDLYDTLSITQS--VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRS 303
Query: 305 QAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD 364
++RVLI TD+ +RG+D+ V LV+NYD+P N + +I ++ F+T+ D
Sbjct: 304 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDD 363
Query: 365 IQRVEAIEERINKKMEE 381
+ ++ IE+ + +EE
Sbjct: 364 RRILKDIEQFYHTTIEE 380
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 141 bits (356), Expect = 2e-33
Identities = 109/467 (23%), Positives = 213/467 (45%), Gaps = 43/467 (9%)
Query: 1 MSNSEFKSLGC----SKWLVEALNAMKIV---------QPTAIQKACIPEILKGRDCIGG 47
+ N + K GC +KW L+ +V T IQ +P I+ GRD IG
Sbjct: 240 LDNIKIKGTGCPKPVTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGI 299
Query: 48 ANTGSGKTIAFAAPMLTK------WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSA-MN 100
+ TGSGKTI++ P+L + S+ G G++L PTRELA+QI E+ T F A +
Sbjct: 300 SKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTS 359
Query: 101 IRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEAD 160
IR GG + +Q +L++ ++ATPGR +L + + KR+ F+V+DEAD
Sbjct: 360 IRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFID-ILTLNDGKLLSTKRITFVVMDEAD 418
Query: 161 ILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESV 220
L F + + + P +Q +LF+AT +++++ A + P T + +
Sbjct: 419 RLFDLGFEPQITQIMKTVRPD--KQCVLFSATFPNKLRSF--AVRVLHSPISITINSKGM 474
Query: 221 DNVAIPKTLETTY--------LLVPEHVKESYLYQILTSE-------KYVKSSCIIFVNR 265
N + + + L+ H + + ++ + + V + IIFV+
Sbjct: 475 VNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAIIFVSS 534
Query: 266 TVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIV 325
+ + + L + + ++H+ P QER ++++F+ + +L+ T+V SRGL++P V
Sbjct: 535 QNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEV 594
Query: 326 ELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFTDV 385
LV+ Y+ ++ ++ + ++ + + + + + D
Sbjct: 595 SLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKAMRDEEIKALDP 654
Query: 386 GDTAVIRKSLTKVTAAKRESLMAMDKEGFGER--RKLQKRKNESKEK 430
+++ K + ++ + K GFG + ++ ++ E++ K
Sbjct: 655 LQAKELQEMSAKFESGMKKGKFRLSK-GFGGKGLENIKSKREEAQNK 700
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 141 bits (356), Expect = 2e-33
Identities = 113/385 (29%), Positives = 180/385 (46%), Gaps = 30/385 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + + L+ + A +P+AIQ+ I +KG D I A +G+GKT FA +L +
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ-KRPH 124
+ + +VL PTRELA QI + A G M +GG ++ + +LQ + PH
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGR V + K +K VLDEAD +L+ F + I N
Sbjct: 155 IVVGTPGR----VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI---YEIFQKLNTS 207
Query: 185 QNLLF-TATMTDQV-----KALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPE 238
++F +ATM V K + D + K T E ++ Y+ V
Sbjct: 208 IQVVFASATMPTDVLEVTKKFMRDPIRILVKKEELTLE-----------GIKQFYINVE- 255
Query: 239 HVKESYLYQILTS--EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERT 296
+E + L E + +IF+N + L + + D V++LH M Q+ER
Sbjct: 256 --REEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 297 NSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXES 356
++ FR+ ++RVLI TD+ +RG+D+ V LV+NYD+P N + +I +
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 357 LCFVTEKDIQRVEAIEERINKKMEE 381
+ FVTE+D + + IE N +EE
Sbjct: 374 INFVTEEDKRILRDIETFYNTTVEE 398
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 141 bits (356), Expect = 2e-33
Identities = 104/387 (26%), Positives = 181/387 (45%), Gaps = 15/387 (3%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF+ + L+ + +P+ IQ+A IP L G+D + A G+GKT A+ P+L
Sbjct: 57 NEFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVL 116
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
+ + +V+ PTRELA+Q ++ ++IRV + GG + + + ++
Sbjct: 117 EQIDPTKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKV 176
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
IIATPGR +L+ + + + + LVLDEAD LL+ F L + LP
Sbjct: 177 QLIIATPGR----ILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLP--KD 230
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
Q LLF+AT VK + E +E+ ++ + + K + Y V E K
Sbjct: 231 PQILLFSATFPLTVKNFMEKHLRE------PYEINLMEELTL-KGVTQYYAFVQERQKVH 283
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L + + K + IIF N T E+L + + L +H++M Q R FR
Sbjct: 284 CLNTLFS--KLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFR 341
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
R L+ +D+ +RG+D+ V +V+N+D P +T++ ++ +T +
Sbjct: 342 QGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYE 401
Query: 364 DIQRVEAIEERINKKMEEFTDVGDTAV 390
D + IE+ + +++ V D A+
Sbjct: 402 DRFDLHRIEKELGTEIKPIPKVIDPAL 428
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 141 bits (355), Expect = 2e-33
Identities = 101/362 (27%), Positives = 170/362 (46%), Gaps = 35/362 (9%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
++ +G + +A+ QPT IQ+ IP I+ G+D + + TGSGKT AF PML K
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 66 WSE-DPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
D G+ ++++PTRELA+Q + G +R A +VGG+ I +Q + + P
Sbjct: 86 LKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPD 145
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ATPGRL H ++ L V+++V DEAD L F L + +P R
Sbjct: 146 ILLATPGRLLHVIVEMDLR----LSYVQYVVFDEADRLFEMGFQDQLTETLKRIP--ESR 199
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVES------------------------- 219
Q LLF+AT+ + + A T+ P + +V+
Sbjct: 200 QTLLFSATLPKMLVDFAKAGLTD--PMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHL 257
Query: 220 VDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL 279
N K LET+ K+ L + + ++ K + ++F E + L
Sbjct: 258 CRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQT-VVFCATMKHVEYVVGILHRA 316
Query: 280 DVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDT 339
+ + ++SQ+ R ++Q+F + +L+ TDVA+RG+DIP+++ V+N P
Sbjct: 317 GIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKL 376
Query: 340 FI 341
F+
Sbjct: 377 FV 378
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 140 bits (353), Expect = 4e-33
Identities = 119/474 (25%), Positives = 202/474 (42%), Gaps = 82/474 (17%)
Query: 2 SNSEFKSLGCSKWLVEALNA-MKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
++ F SLG L + L M PT +Q IP IL GRD + A TG+GKTIA+ A
Sbjct: 27 ASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLA 86
Query: 61 PML------TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMN-IRVAIVVGGESIV 113
P++ + + G F +V+ PTREL +Q+ E + I V+GGE
Sbjct: 87 PLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKA 146
Query: 114 QQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLAT 173
++ L+K +IATPGRL H+ N+ K +++++ DEAD +L + K++
Sbjct: 147 KEKARLRKGISILIATPGRLLDHLKNTASFV---HKNLRWVIFDEADSILELGYGKEIEQ 203
Query: 174 CVSIL--------------PPKNKRQNLLFTATMTDQVKALSD----------------- 202
+ +L P ++QNLL +AT+ D+V L+
Sbjct: 204 IIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQ 263
Query: 203 ---------APQTEGKPPVFTFEVES---VDNVAIPKTLETTYLLVPEHVKESYLYQILT 250
AP ++ + V + ++ IP L YL VP + L +L
Sbjct: 264 QNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLK 323
Query: 251 S--EKYVKSSCIIFVNRTVTAEILRRTLKS------------------LDVRVTSLHSQM 290
+ E+ ++F + + L L + LH M
Sbjct: 324 NLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSM 383
Query: 291 PQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXX 350
Q++R ++ F+ + VL++TDVA+RGLD P V ++ YD PG ++
Sbjct: 384 EQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARI 443
Query: 351 XXXXESLCFVTEKDIQRVEAIEER--------INKKMEEFTDVGDTAVIRKSLT 396
E+L F+ +I ++ +++ + K +++F G+ I+K L+
Sbjct: 444 GEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMPRIKKVLS 497
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 140 bits (352), Expect = 5e-33
Identities = 101/386 (26%), Positives = 190/386 (49%), Gaps = 17/386 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+ L+ A+ P+ +Q CIP+ + G D + A +G GKT F
Sbjct: 44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQK 121
L + + +V+ TRELA QI++++ F M N++VA+ GG SI + L+K
Sbjct: 104 LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 163
Query: 122 R-PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSILP 179
PH ++ TPGR+ N + LK +K +LDE D +L + +D+ + P
Sbjct: 164 NCPHIVVGTPGRILALARNKSLN----LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
+++Q ++F+AT++ +++ + + P+ F V+ + + L+ Y+ + ++
Sbjct: 220 --HEKQVMMFSATLSKEIRPVCRKFMQD---PMEIF-VDDETKLTL-HGLQQYYVKLKDN 272
Query: 240 VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
K L+ +L ++ + +IFV L + L + ++H MPQ+ER +
Sbjct: 273 EKNRKLFDLLDVLEF--NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 330
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF 359
Q+F+ R+L+AT++ RG+DI V + NYD+P + DT++ ++ F
Sbjct: 331 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 390
Query: 360 VT-EKDIQRVEAIEERINKKMEEFTD 384
V+ E D + + +++R + E D
Sbjct: 391 VSDENDAKILNDVQDRFEVNISELPD 416
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 140 bits (352), Expect = 5e-33
Identities = 110/371 (29%), Positives = 180/371 (47%), Gaps = 23/371 (6%)
Query: 27 PTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP----MLTKWSEDPQGMFGIVLTPTR 82
P+ IQ P ++ RD + A TGSGKT+ + P + ++ G +VL+PTR
Sbjct: 252 PSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTR 311
Query: 83 ELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGE 142
ELA QI + FG + I A + GG Q E+++ ++ATPGRL + +L
Sbjct: 312 ELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRL-NDILEMKR 370
Query: 143 DTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSD 202
+ L +V +LVLDEAD +L F + V+ +P KRQ L++TAT +V+ ++
Sbjct: 371 IS---LHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP--TKRQTLMYTATWPKEVRKIA- 424
Query: 203 APQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIF 262
A V + +VD + K++ T ++ K S L QIL S++ S IIF
Sbjct: 425 ADLLVNPAQV---NIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQE-PGSKIIIF 480
Query: 263 VNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDI 322
+ + L R L + ++H Q ER + + +FR+ VL+ATDVA+RGLD+
Sbjct: 481 CSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDV 539
Query: 323 PIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD-------IQRVEAIEERI 375
+ +VVNYD P + ++ + F ++D I+ +E +++
Sbjct: 540 KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKV 599
Query: 376 NKKMEEFTDVG 386
++ E G
Sbjct: 600 PPQVREMATRG 610
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 139 bits (351), Expect = 6e-33
Identities = 107/361 (29%), Positives = 170/361 (46%), Gaps = 19/361 (5%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP---- 70
+++ + +PTAIQ P L G D +G A TGSGKT+++ P + + P
Sbjct: 105 VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER 164
Query: 71 -QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIAT 129
G +VL PTRELA Q+ + + A ++ + GG Q +L++ IAT
Sbjct: 165 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 130 PGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLF 189
PGRL L G+ L+R +LVLDEAD +L F + V + P RQ L++
Sbjct: 225 PGRLIDF-LECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD--RQTLMW 278
Query: 190 TATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLL--VPEHVKESYLYQ 247
+AT +V+ L++ + + +++ A L+ + V + K L +
Sbjct: 279 SATWPKEVRQLAE----DFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLME 334
Query: 248 ILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAA 307
+ SEK K+ I+FV + L R ++ +H QQER + F+ A
Sbjct: 335 EIMSEKENKT--IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 308 RVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQR 367
+LIATDVASRGLD+ V+ V+NYD P + + +I + F T +I++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 368 V 368
V
Sbjct: 453 V 453
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 139 bits (351), Expect = 6e-33
Identities = 106/369 (28%), Positives = 172/369 (45%), Gaps = 17/369 (4%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMF 74
L+ + A +P+AIQ+ I KG D I A +G+GKT F + +L +
Sbjct: 52 LLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ 111
Query: 75 GIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLA 134
+VL PTRELA QI + A G + ++ VGG S+ + LQ H ++ TPGR+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 135 HHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMT 194
+ +K VLDEAD +L+ F + +LP +K Q +F+ATM
Sbjct: 172 DLLRRQSLRA----DAIKMFVLDEADEMLSRGFKDQIYDIFQLLP--SKVQVGVFSATMP 225
Query: 195 DQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTS--E 252
+ AL + KP + + + TLE KE + + L E
Sbjct: 226 PE--ALEITRKFMNKPVRILVKRDEL-------TLEGIKQFYVNVDKEEWKLETLCDLYE 276
Query: 253 KYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIA 312
+ +IFVN + L ++S D V++ H M Q R ++ FR+ ++RVLI
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336
Query: 313 TDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIE 372
TD+ +RG+D+ V LV+N+D+P P+ ++ ++ F+T +D + + I+
Sbjct: 337 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQ 396
Query: 373 ERINKKMEE 381
N +EE
Sbjct: 397 RFYNVVVEE 405
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 139 bits (351), Expect = 6e-33
Identities = 118/451 (26%), Positives = 202/451 (44%), Gaps = 81/451 (17%)
Query: 2 SNSEFKSLGCSKWLVEAL-NAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
+ S+ +LG V+ L + + I + T++Q+ IPE+L+G+D + + TGSGKT+A+A
Sbjct: 325 TGSKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYAL 384
Query: 61 PMLTKWSED------PQGMFGIVLTPTRELAMQIAEQFTAFGSAMN-IRVAIVVGGESIV 113
P++ + G+ +V+ PTREL MQ E I ++GGES
Sbjct: 385 PLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRK 444
Query: 114 QQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLAT 173
+ L+K + +I TPGRL H+L++ L +++FL+LDEAD LL + +D+
Sbjct: 445 SEKARLRKGINILIGTPGRLVDHLLHTASFK---LTKLQFLILDEADRLLELGYERDVKQ 501
Query: 174 CVSILPPKN---------KRQNLLFTATMTDQVKAL-------------SDAPQTEGKPP 211
V + + + Q +L +AT+T QV+ L SD +
Sbjct: 502 LVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKS 561
Query: 212 VFTFEVESVDN------------------VAIPKTLETTYLLVPEHVKESYLYQILTSE- 252
++ E+++ ++IP+ L+ +Y++VP ++ L +L E
Sbjct: 562 KDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEV 621
Query: 253 --KYVKSSCIIFVNRT---------VTAEILRRTLKSLD------------------VRV 283
+ I+F++ T + + RR L D +R
Sbjct: 622 DASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRF 681
Query: 284 TSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXX 343
LH M Q ER + FR A+ VL+ATDV RG+D+P ++LVV Y P F+
Sbjct: 682 FKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHR 741
Query: 344 XXXXXXXXXXXESLCFVTEKDIQRVEAIEER 374
++ F+T + Q V +E++
Sbjct: 742 VGRTARAGRKGRAVLFLTPSEAQFVRHLEKK 772
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 139 bits (350), Expect = 8e-33
Identities = 102/378 (26%), Positives = 185/378 (47%), Gaps = 16/378 (4%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF+ + L+ + M +P+ IQ+ IP L GRD + A G+GK+ A+ P+L
Sbjct: 85 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 144
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMN-IRVAIVVGGESIVQQAIELQKR 122
+ + +V+ PTRELA+Q+++ M +V GG ++ + L
Sbjct: 145 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 204
Query: 123 PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKN 182
H +IATPGR +L+ + + + V+ +VLDEAD LL++ F + + + LP
Sbjct: 205 VHVVIATPGR----ILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP--K 258
Query: 183 KRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKE 242
RQ LL++AT V+ ++ KP +E+ ++ + + K + Y V E K
Sbjct: 259 NRQILLYSATFPLSVQKFMNSHLQ--KP----YEINLMEELTL-KGVTQYYAYVTERQKV 311
Query: 243 SYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRF 302
L + + + +S IIF N + E+L + + L +H++M Q+ R F
Sbjct: 312 HCLNTLFSRLQINQS--IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDF 369
Query: 303 RAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
R R L+ TD+ +RG+DI V +V+N+D P +T++ ++ +T
Sbjct: 370 RNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITY 429
Query: 363 KDIQRVEAIEERINKKME 380
D +++IEE++ +++
Sbjct: 430 DDRFNLKSIEEQLGTEIK 447
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 139 bits (350), Expect = 8e-33
Identities = 117/399 (29%), Positives = 178/399 (44%), Gaps = 65/399 (16%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGK----------- 54
F L S+ L+ A + +PT IQ IP+ + RD A TGSGK
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQVQFIPQ--EWRDLCASAITGSGKVSTRLMVLCNT 226
Query: 55 ---------TIAFAAPMLTKWSEDPQGMFG---IVLTPTRELAMQIAEQFTAFGSAMNIR 102
T AFA P L + P+ +F ++LTPTRELA+QI +I+
Sbjct: 227 EILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIK 286
Query: 103 VAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADIL 162
++VGG S+ +Q + L+ P ++ATPGR+ H+ NS + L L+LDEAD L
Sbjct: 287 CGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLA---VLILDEADRL 343
Query: 163 LTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDN 222
L F+ ++ V + P +RQ +LF+ATMT++VK L + KP + + +
Sbjct: 344 LQTGFATEITELVRLCP--KRRQTMLFSATMTEEVKEL--VKLSLNKP----LRLSADPS 395
Query: 223 VAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVR 282
P L YL ++ SC + A L+ ++
Sbjct: 396 ARRPPGLTEEYL-----------------REFFVPSCASGTKQA--AHRLKILFGLAGLK 436
Query: 283 VTSLHSQMPQQERTN----------SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYD 332
LH + Q +R + S++ FR Q LIATDVA+RGLDI V+ V+NY
Sbjct: 437 AAELHGNLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYA 496
Query: 333 IPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAI 371
P D+++ ++ FVT+ D ++ I
Sbjct: 497 CPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 535
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 139 bits (350), Expect = 8e-33
Identities = 108/357 (30%), Positives = 174/357 (48%), Gaps = 27/357 (7%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
S F S ++AL+A I++ T +Q A + E L G+D + A TG+GK++AF P
Sbjct: 326 SAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLP 385
Query: 62 MLT---------KWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMN-IRVAIVVGGES 111
+ K +F ++L PTRELA QIA + A + I V ++GG
Sbjct: 386 AIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTR 445
Query: 112 IVQQAIELQKRP-HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKD 170
L+ P +IATPGRL H+ N T L +K ++DEAD+LL F +D
Sbjct: 446 FKLDQQRLESEPCQILIATPGRLLDHIENKSGLT-SRLMALKLFIVDEADLLLDLGFRRD 504
Query: 171 LATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFE---VESVDNV---A 224
+ + LP +RQ+LLF+AT+ +V+ +S + T VE+ D V
Sbjct: 505 VEKIIDCLP--RQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSC 562
Query: 225 IPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVT 284
I E+ + LVP +KE I + Y I+F + + ++ L+ + + V
Sbjct: 563 IVAPHESHFHLVPHLLKE----HINNTPDY---KIIVFCSTGMVTSLMYTLLREMKLNVR 615
Query: 285 SLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+H++ PQ RT F+ +L+ +DV++RG++ P V LV+ IP + + +I
Sbjct: 616 EIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYI 672
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 139 bits (349), Expect = 1e-32
Identities = 117/399 (29%), Positives = 186/399 (46%), Gaps = 33/399 (8%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
+EF S + L++ + QPT +QK IP + GRD + A TGSGKT F P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 64 TKWSE--------DPQGMFG----------IVLTPTRELAMQIAEQFTAFGSAMNIRVAI 105
+ + D G ++L PTREL QI E+ F +R
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 106 VVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTE 165
V GG I Q ++ + + ATPGRL +++ G + L +KFLVLDEAD +L
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVD-LIDRGRIS---LANIKFLVLDEADRMLDM 344
Query: 166 TFSKDLATCV--SILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNV 223
F + V + + +RQ L+F+AT ++ L+ + K VF SV V
Sbjct: 345 GFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLA---RDFLKDYVFL----SVGRV 397
Query: 224 -AIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVR 282
+ + + + V + K SYL IL + + +IFV A+ L L + +
Sbjct: 398 GSTSENITQKVVHVEDSEKRSYLLDILHTLP-PEGLTLIFVETKRMADTLTDYLLNSNFP 456
Query: 283 VTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIX 342
TS+H Q+ER +++ FR+ +++AT VASRGLDIP V V+NYD+P + D ++
Sbjct: 457 ATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
Query: 343 XXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEE 381
+++ F + + + E + + +E
Sbjct: 517 RIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQE 555
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 138 bits (348), Expect = 1e-32
Identities = 104/396 (26%), Positives = 185/396 (46%), Gaps = 19/396 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+ L+ A+ P+ +Q CIP+ + G D I A +G GKT F
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESI-VQQAIELQ 120
L + P + +VL TRELA QI +F F + + + +V++ GG +I + + +
Sbjct: 105 LQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKN 164
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSILP 179
+ PH ++ TPGR VL + LK V+ +LDE D +L +D+ + P
Sbjct: 165 ECPHIVVGTPGR----VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIP-KTLETTYLLVPE 238
+ +Q ++F+AT++ +++ + + E+ D + L Y+ + E
Sbjct: 221 --HDKQVMMFSATLSKEIRPVCKKFMQD------PMEIYVDDEAKLTLHGLVQHYIKLSE 272
Query: 239 HVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
K L +L + + + +IFV A L + L + +HS M Q+ER
Sbjct: 273 MEKNRKLNDLLDALDF--NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTR 330
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+ F+ R+L+ATD+ RG+DI V +V+NYD+P + DT++ ++
Sbjct: 331 YKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
Query: 359 FV-TEKDIQRVEAIEERINKKMEEFTDVGDTAVIRK 393
FV + D + + ++ER ++E + DT+ K
Sbjct: 391 FVASASDSEVLNQVQERFEVDIKELPEQIDTSTYSK 426
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 138 bits (347), Expect = 2e-32
Identities = 104/396 (26%), Positives = 185/396 (46%), Gaps = 19/396 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+ L+ A+ P+ +Q CIP+ + G D I A +G GKT F
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESI-VQQAIELQ 120
L + P + +VL TRELA QI +F F + + + +V++ GG +I + + +
Sbjct: 105 LQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKN 164
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSILP 179
+ PH ++ TPGR VL + LK V+ +LDE D +L +D+ + P
Sbjct: 165 ECPHIVVGTPGR----VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIP-KTLETTYLLVPE 238
+ +Q ++F+AT++ +++ + + E+ D + L Y+ + E
Sbjct: 221 --HDKQVMMFSATLSKEIRPVCKKFMQD------PMEIYVDDEAKLTLHGLVQHYIKLSE 272
Query: 239 HVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
K L +L + + + +IFV A L + L + +HS M Q+ER
Sbjct: 273 MEKTRKLNDLLDALDF--NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTR 330
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+ F+ R+L+ATD+ RG+DI V +V+NYD+P + DT++ ++
Sbjct: 331 YKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
Query: 359 FV-TEKDIQRVEAIEERINKKMEEFTDVGDTAVIRK 393
FV + D + + ++ER ++E + DT+ K
Sbjct: 391 FVASASDSEVLNQVQERFEVDIKELPEQIDTSTYSK 426
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 138 bits (347), Expect = 2e-32
Identities = 119/418 (28%), Positives = 193/418 (45%), Gaps = 35/418 (8%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML------TKWSE 68
++EALN T +Q A IP + +D A TGSGKT+AF P++ T +
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP 86
Query: 69 DPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESI-VQQAIELQKRPHFI 126
P + G++++PTREL+ QI F S + N+ ++VGG + I ++ + +
Sbjct: 87 KPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVL 146
Query: 127 IATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQN 186
I TPGRL+ ++ E I + ++ L+LDEAD LL F + + +S LP +R+
Sbjct: 147 IGTPGRLSD-IMERME--ILDFRNLEILILDEADRLLEMGFQRQVNYIISRLP--KQRRT 201
Query: 187 LLFTATMTDQVKALSDAP-----QTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK 241
LF+AT T+ V+ L+ A + E + + + + N P L Y+ K
Sbjct: 202 GLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKK 261
Query: 242 ESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL----DVRVTSLHSQMPQQERTN 297
S L +L K I+F + + L + + + +H M Q R
Sbjct: 262 SSQLVDLLIKNSDKK--LIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDK 319
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL 357
++ F ++ L+ TDVA+RGLDIP ++ VV YD P +P+ F ++
Sbjct: 320 ALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAI 379
Query: 358 CFVTEKDIQRVE-------AIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMA 408
F+ K+ VE +EER K E+ +DV +IR + K A + L A
Sbjct: 380 VFLLPKEEAYVEFMRIRRVPLEER--KCSEDASDV--IPIIRSAAMKDRAVMEKGLKA 433
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 138 bits (347), Expect = 2e-32
Identities = 103/341 (30%), Positives = 161/341 (47%), Gaps = 29/341 (8%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP---- 70
L+ L I+ PT IQ +P +L GRD IG A TGSGKT+ F PM+ ++
Sbjct: 108 LLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMP 167
Query: 71 ----QGMFGIVLTPTRELAMQ---IAEQFTAF---GSAMNIRVAIVVGGESIVQQAIELQ 120
+G +V+ P+RELA Q + EQF A +R + +GG + Q ++
Sbjct: 168 IAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVK 227
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
K H ++ATPGRL + L + L LDEAD L+ F D+
Sbjct: 228 KGVHIVVATPGRLKDILAKKKMS----LDACRLLTLDEADRLVDLGFEDDIRHVFDHF-- 281
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
K++RQ LLF+ATM +++ + + KP N+ + + +E V +
Sbjct: 282 KSQRQTLLFSATMPAKIQIFATSALV--KPVTVNVGRAGAANLDVIQEVE----YVKQEA 335
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
K YL + L +IF + + L V ++H Q++R ++
Sbjct: 336 KIVYLLECLQK---TTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAIS 392
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
F+A VL+ATDVAS+GLD P ++ V+NYD+PG + ++
Sbjct: 393 LFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYV 433
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 137 bits (346), Expect = 2e-32
Identities = 113/411 (27%), Positives = 196/411 (47%), Gaps = 24/411 (5%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP---- 70
L++++ + IV+PT IQ P IL+G D I A TG+GKT+++ P P
Sbjct: 233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 292
Query: 71 --QGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIA 128
G +VLTPTRELA+ + + + + S ++ + GG + Q ++ K IIA
Sbjct: 293 QRNGPGMLVLTPTRELALHVEAECSKY-SYKGLKSICIYGGRNRNGQIEDISKGVDIIIA 351
Query: 129 TPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLL 188
TPGRL +N+ + L+ + +LV+DEAD +L F + +L + RQ ++
Sbjct: 352 TPGRLNDLQMNNSVN----LRSITYLVIDEADKMLDMEFEPQIRKI--LLDVRPDRQTVM 405
Query: 189 FTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQI 248
+AT D V+ L+ + K P+ + V +++ VA+ T++ ++ E K + L Q
Sbjct: 406 TSATWPDTVRQLA---LSYLKDPMIVY-VGNLNLVAV-NTVKQNIIVTTEKEKRA-LTQE 459
Query: 249 LTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAAR 308
I+FV++ A+ L + SLH Q ++ +V+ F++ +
Sbjct: 460 FVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIK 519
Query: 309 VLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRV 368
+LI TD+ SRGLD+ V V NYD P N D ++ S+ +T++D +
Sbjct: 520 ILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMA 579
Query: 369 EAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRK 419
+ + +++ + V + V+ K+ KR K G+RRK
Sbjct: 580 GELIKILDRANQ---SVPEDLVVMAEQYKLNQQKRHRETRSRKP--GQRRK 625
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 137 bits (346), Expect = 2e-32
Identities = 107/395 (27%), Positives = 181/395 (45%), Gaps = 27/395 (6%)
Query: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
M +F+ L + + + L V +Q+ IP L+G D IG + TG+GKT+AF
Sbjct: 1 MRPMKFEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLV 60
Query: 61 PMLTK-----WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQ 115
P L + W G+ +V+TPTRELA+QI + + + +++GG +
Sbjct: 61 PTLQRLVSLGWGGG-DGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDE 119
Query: 116 AIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCV 175
+++ + + ++ TPGRL H+ E+ V+ L+LDEAD ++ F + L +
Sbjct: 120 LLKVNQM-NILVCTPGRLLQHLQ---ENPYLSTANVQILILDEADKMIEMGFKEVLEDIL 175
Query: 176 SILPPKNKRQNLLFTAT---MTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETT 232
+P K+Q LLF+AT T ++ L D P + + E P L
Sbjct: 176 EYIP--QKKQTLLFSATPKASTARILKLED-------PRIISIYKEE----GFPSQLRQY 222
Query: 233 YLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQ 292
+ ++ K +YL+ + S VK + V L L R+ L M Q
Sbjct: 223 FYMMRTGDKINYLHTFIGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQ 282
Query: 293 QERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXX 352
++R + +RF + +L TD+ SRGLD P V++V+ YD P N +T++
Sbjct: 283 KQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSE 342
Query: 353 XXESLCFVTEKDIQRVEAIEER-INKKMEEFTDVG 386
ES ++ + + + I+++ KK E D G
Sbjct: 343 RGESYVYLVHGEEKLLTDIQKKGWIKKQEGMEDKG 377
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 137 bits (346), Expect = 2e-32
Identities = 109/357 (30%), Positives = 173/357 (47%), Gaps = 27/357 (7%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
S F S ++AL+A IV+ T +Q A + E L G+D + A TG+GK++AF P
Sbjct: 373 SAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLP 432
Query: 62 MLT---------KWSEDPQGMFGIVLTPTRELAMQIAEQFTAF-GSAMNIRVAIVVGGES 111
+ K +F ++L PTRELA QIA + A + I V ++GG
Sbjct: 433 AIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTR 492
Query: 112 IVQQAIELQKRP-HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKD 170
L+ P +IATPGRL H+ N T L +K ++DEAD+LL F +D
Sbjct: 493 FRLDQQRLESEPCQILIATPGRLLDHIENKSGLT-SRLMALKLFIVDEADLLLDLGFKRD 551
Query: 171 LATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFE---VESVDNV---A 224
+ + LP +RQ+LLF+AT+ +V+ +S + T VE+ D V
Sbjct: 552 VEKIIDCLP--RQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSC 609
Query: 225 IPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVT 284
I E+ + LVP +KE I Y I+F + + ++ L+ + + V
Sbjct: 610 IVAPHESHFHLVPHLLKE----HINNMPDY---KIIVFCSTGMVTSLMYTLLREMKLNVR 662
Query: 285 SLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+H++ PQ RT F+ +L+ +DV++RG++ P V LV+ IP + + +I
Sbjct: 663 EIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYI 719
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 137 bits (344), Expect = 4e-32
Identities = 120/416 (28%), Positives = 190/416 (44%), Gaps = 34/416 (8%)
Query: 12 SKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML------TK 65
S+ ++EAL+ T +Q IP + +D + A TGSGKT+AF P +
Sbjct: 24 SEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNS 83
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQKR-P 123
+ P + G++++PTREL+ QI + F S + N+ ++VGG + L++
Sbjct: 84 YPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGA 143
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
+ +I TPGRL+ + + ++ L+LDEAD LL F K + +S LP +
Sbjct: 144 NLLIGTPGRLSDMMKRM---EFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLP--KQ 198
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
R+ LF+AT T V L+ A + E +S + L YL K S
Sbjct: 199 RRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSG----LYCEYLKCEADQKSS 254
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAE----ILRR--TLKSLDVRVTSLHSQMPQQERTN 297
L +L K K ++F + +L + TLKS+ S H +M Q+ R
Sbjct: 255 QLVHLLIENKNKK--LVVFFMTCACVDYWGLVLSKIPTLKSISF--FSTHGKMDQKGRDT 310
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL 357
++ F ++ VL+ TDVA+RGLDIP ++ VV YD P +PD FI ++
Sbjct: 311 ALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAI 370
Query: 358 CFVTEK-----DIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMA 408
F+ K + R+ + + K E +DV +IR K A + L A
Sbjct: 371 VFLMPKETDYVEFMRIRRVPLQERKCSENASDV--IPIIRSLAIKDRAVLEKGLQA 424
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 136 bits (343), Expect = 5e-32
Identities = 112/420 (26%), Positives = 194/420 (45%), Gaps = 61/420 (14%)
Query: 20 NAMKIVQPTAIQKACIPEILK--GRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ------ 71
N M I PTAIQ C+P +L +D A TGSGKT+A+ P++ + P+
Sbjct: 155 NKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRT 214
Query: 72 -GMFGIVLTPTRELAMQI---AEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFII 127
G++ +++ PTREL QI A + + I V+GGE + ++K + +I
Sbjct: 215 SGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILI 274
Query: 128 ATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK------ 181
TPGRLA H+ N+ + +V+++VLDE D L+ F + L +S L +
Sbjct: 275 GTPGRLADHLENTEALDV---SQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKK 331
Query: 182 -----NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVA-IPKTLETTYLL 235
+++ +L +ATM D VK LSD+ + + E+ D + P+ L Y++
Sbjct: 332 DLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVV 391
Query: 236 VPEHVKESYLYQILTSEKYVKSSCIIFVNRT-------------VTAEILRRTLKSL--- 279
VP ++ L +L S IIF++ + + A+ + +K
Sbjct: 392 VPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDS 451
Query: 280 --DV-------------RVTSLHSQMPQQERTNSVQRFRA---QAARVLIATDVASRGLD 321
D+ V LH + QQ RT+++ F + + +L+ TDVA+RGLD
Sbjct: 452 EGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLD 511
Query: 322 IPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEE 381
+P V+LVV YD P + D ++ ++ F+ K+ + + ++ ++ + E
Sbjct: 512 LPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILE 571
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 136 bits (343), Expect = 5e-32
Identities = 94/295 (31%), Positives = 150/295 (49%), Gaps = 31/295 (10%)
Query: 73 MFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGR 132
++G+VLTPTRELA+Q+ A IRVA + GG ++ +Q L++ P ++ATPGR
Sbjct: 341 LYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGR 400
Query: 133 LAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSIL----PPKNKRQNLL 188
L + G +G ++ V FLV+DE D ++ + ++L + + +L K++RQN +
Sbjct: 401 L-WELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFV 459
Query: 189 FTATMTDQVKALSDAPQTE--GKPPVFTFE--------------------VESVDNVAIP 226
++AT+T V L D Q GK P F + V+ +
Sbjct: 460 YSATLT-LVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTA 518
Query: 227 KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSL 286
+TL + LL P K+ +LY + I+F N + L LD L
Sbjct: 519 QTLTESRLLCPIDHKDYHLYYFIQRHP---GRTIVFCNSIDCVKRLATLFGLLDCNPLPL 575
Query: 287 HSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
H+ M Q++R +++RFR +LIATDVA+RGLDIP VE V++Y +P + ++
Sbjct: 576 HANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYV 630
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 135 bits (341), Expect = 9e-32
Identities = 105/367 (28%), Positives = 179/367 (48%), Gaps = 21/367 (5%)
Query: 27 PTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAM 86
P+ +Q+ IP+ + G D + A +G GKT F L + P + +V+ RELA
Sbjct: 85 PSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAY 144
Query: 87 QIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQKR---PHFIIATPGRLAHHVLNSGE 142
QI ++ F M +++ A+ GG I + A L+ + PH ++ATPGRL V
Sbjct: 145 QIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYI 204
Query: 143 DTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSD 202
D L VK V+DE D +L E + + P++K Q ++F+AT++ +++ +
Sbjct: 205 D----LSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDK-QVMMFSATLSQEIRPIC- 258
Query: 203 APQTEGKPPVFTFEVESVDNVA--IPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCI 260
+ + P+ F VD+ A L+ Y+ + E K L Q+L ++ + I
Sbjct: 259 --RRFLQNPLEIF----VDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEF--NQVI 310
Query: 261 IFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGL 320
IFV T A L + L + + ++H M Q+ER + F+ R+ ++TDV RG+
Sbjct: 311 IFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGI 370
Query: 321 DIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEA-IEERINKKM 379
DI + L +NYD+ D ++ ++ FV+ K+ + V A I+ER + K+
Sbjct: 371 DIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKI 430
Query: 380 EEFTDVG 386
EF + G
Sbjct: 431 AEFPEEG 437
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 135 bits (341), Expect = 9e-32
Identities = 98/329 (29%), Positives = 160/329 (47%), Gaps = 32/329 (9%)
Query: 73 MFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGR 132
+ G+VLTPTRELA+Q+ + A I+ AI+VGG S +Q L +RP ++ATPGR
Sbjct: 388 LLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGR 447
Query: 133 LAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKN---KRQNLLF 189
L ++ + L++++ LV+DEAD ++ + +L+ + +L KRQ L+F
Sbjct: 448 L-WELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVF 506
Query: 190 TATMT------------------DQVKALSDAPQT---EGKPPVFTFEVESVDNVAIPKT 228
+AT+T D+ L Q GKP V ++ N A +T
Sbjct: 507 SATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKV----IDLTRNEATVET 562
Query: 229 LETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHS 288
L T + K+ YLY L ++F N + L LK LD+ +LH+
Sbjct: 563 LTETKIHCETDEKDFYLYYFLMQ---YPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHA 619
Query: 289 QMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXX 348
M Q++R ++++F VL+ATDVA+RGLDIP V+ V++Y +P + ++
Sbjct: 620 CMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTA 679
Query: 349 XXXXXXESLCFVTEKDIQRVEAIEERINK 377
SL + +D+ + I + + K
Sbjct: 680 RATNEGLSLMLIGPEDVINFKKIYKTLKK 708
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 135 bits (341), Expect = 9e-32
Identities = 100/392 (25%), Positives = 189/392 (47%), Gaps = 19/392 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+ ++ A+ P+ +Q CIP+ + G D + A +G GKT F
Sbjct: 40 SSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITT 99
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQK 121
L + + + + TRELA QI++++ F + ++VA+ GG +I + L
Sbjct: 100 LQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLAN 159
Query: 122 R-PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSILP 179
PH ++ TPGR+ + SG+ L +VK+ VLDE D ++ + +D+ V + P
Sbjct: 160 DCPHIVVGTPGRMLA-LARSGKLK---LDKVKYFVLDECDKMIGDADMRRDVQEIVKMTP 215
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIP-KTLETTYLLVPE 238
++Q ++F+AT+ +++ + + EV D + L+ Y+ + E
Sbjct: 216 --QQKQVMMFSATLPKELRTVCKRFMQD------PMEVYVDDEAKLTLHGLQQHYVKLKE 267
Query: 239 HVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
K L +L + ++ + +IFV E L + L + ++H QM Q+ER +
Sbjct: 268 AEKNRRLLNLLDALEF--NQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSR 325
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
Q F+ R+L+ATD+ RG+DI V +V NYD+P + D+++ ++
Sbjct: 326 YQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAIT 385
Query: 359 FVT-EKDIQRVEAIEERINKKMEEFTDVGDTA 389
FV+ E D + + ++++R + + E + D +
Sbjct: 386 FVSDENDAKTLNSVQDRFDISITELPEKIDVS 417
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 135 bits (339), Expect = 2e-31
Identities = 116/374 (31%), Positives = 178/374 (47%), Gaps = 30/374 (8%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFA 59
S F LG + L++ + AMK +P+ IQ+ +P +L R+ I + +G+GKT AF+
Sbjct: 90 SAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 149
Query: 60 APMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
MLT+ + + I L P+RELA Q E G I ++V + I
Sbjct: 150 LTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINA 209
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
Q I+ TPG VL+ + L+++K VLDEAD +L + D V
Sbjct: 210 Q----VIVGTPGT----VLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL 261
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
PK+ Q +LF+AT D V+ + + P T E+++ N ++ Y+ +
Sbjct: 262 PKDT-QLVLFSATFADAVRQYAK----KIVPNANTLELQT--NEVNVDAIKQLYM---DC 311
Query: 240 VKESYLYQILTSEKY---VKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERT 296
E+ + +LT E Y S IIFV TA +L LKS V+ LH + QER
Sbjct: 312 KNEADKFDVLT-ELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 370
Query: 297 NSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP------GNPDTFIXXXXXXXXX 350
+ FR ++VLI T+V +RG+DIP V +VVNYD+P +P T+I
Sbjct: 371 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 430
Query: 351 XXXXESLCFVTEKD 364
++ FV +K+
Sbjct: 431 GRKGVAISFVHDKN 444
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 134 bits (336), Expect = 3e-31
Identities = 115/422 (27%), Positives = 197/422 (46%), Gaps = 36/422 (8%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWS-EDPQGM 73
L E L I + T IQ+ IP I RD + A TGSGKTIA+ P+L K P G
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGY 116
Query: 74 FGIVLTPTRELAMQIAEQFT--AFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPG 131
I++ PTREL QI Q +FG+++ I + + E I ++A +L+++ I TP
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKI-IELSKSNEKIQEKAPKLREKYDMCIGTPM 175
Query: 132 RLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTA 191
RL + T ++V+F V+DEAD L F + +S N ++L F+A
Sbjct: 176 RLVQAI-----QTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSL-FSA 229
Query: 192 TMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTS 251
T+ +V+ L+ + + + + D++ + L V + + + + S
Sbjct: 230 TIPSRVEELAKVVTVDPIRIIVGLKDAATDSI------DQRLLFVGSDTSKIVILRQMIS 283
Query: 252 EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLI 311
+K +IFV A+ L L ++ V +H ++PQ +R ++ +FR VLI
Sbjct: 284 NGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLI 343
Query: 312 ATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAI 371
ATD+ +RG+D V++V+N+D P + ++I +++ F T++D + ++ I
Sbjct: 344 ATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLI 403
Query: 372 EERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQKRKNESKEKT 431
V+R S +V +MA+ K ++KL+K + K T
Sbjct: 404 ----------------AGVMRSSGCEVP----NWVMALPKPSKEMKKKLKKSPPKRKRIT 443
Query: 432 HR 433
R
Sbjct: 444 TR 445
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 134 bits (336), Expect = 3e-31
Identities = 102/386 (26%), Positives = 188/386 (48%), Gaps = 17/386 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+ L+ A+ P+ +Q CIP+ + G D + A +G GKT F
Sbjct: 43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQK 121
L + + +V+ TRELA QI++++ F M +++V++ GG SI + L+K
Sbjct: 103 LQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK 162
Query: 122 R-PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSILP 179
PH ++ TPGR+ V N LK VK VLDE D +L + +D+ + P
Sbjct: 163 NCPHVVVGTPGRILALVRNRSFS----LKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEH 239
+++Q ++F+AT++ ++ + + P+ F V+ + + L+ Y+ + +
Sbjct: 219 --HEKQCMMFSATLSKDIRPVCRKFMQD---PMEVF-VDDETKLTL-HGLQQYYVKLKDS 271
Query: 240 VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSV 299
K L+ +L ++ + IIFV L + L + ++H M Q+ER +
Sbjct: 272 EKNRKLFDLLDVLEF--NQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRY 329
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCF 359
Q+F+ R+L+AT++ RG+DI V +V NYD+P + DT++ ++ F
Sbjct: 330 QQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 389
Query: 360 VT-EKDIQRVEAIEERINKKMEEFTD 384
V+ E D + + +++R + E +
Sbjct: 390 VSDENDAKILNDVQDRFEVNVAELPE 415
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 133 bits (334), Expect = 6e-31
Identities = 111/367 (30%), Positives = 173/367 (46%), Gaps = 35/367 (9%)
Query: 2 SNSEFKSLGCSKWLVEALN--AMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFA 59
S F LG ++ AL A ++VQPT +Q + IP +L+GR + A TGSGKT+++
Sbjct: 124 SKGSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYL 183
Query: 60 APMLTKWSEDPQ-------GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESI 112
P+L + P G+VL P+RELA Q+ G ++ + V + GG +
Sbjct: 184 LPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGM 243
Query: 113 VQQAIELQKRPH--FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETF--- 167
+ ++L ++P ++ATPG L + + + L+++ FLVLDEAD LL E+F
Sbjct: 244 RRIRLQLSRQPSADVLVATPGALWKAL----KSRLISLEQLSFLVLDEADTLLDESFLEL 299
Query: 168 ------SKDLATCVSIL--PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVES 219
+A + L P K Q +L AT + V L + + P T S
Sbjct: 300 VDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVAS---PDAVTTITSS 356
Query: 220 VDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVK-----SSCIIFVNRTVTAEILRR 274
+ +P ++ T+L + K + L IL + + ++F N + T L
Sbjct: 357 KLHCIMPH-VKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGY 415
Query: 275 TLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP 334
L ++ L QMP R Q F+ + +L+ TD+ASRGLD VELVVNYD P
Sbjct: 416 ILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFP 475
Query: 335 GNPDTFI 341
+I
Sbjct: 476 PTLQDYI 482
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 133 bits (334), Expect = 6e-31
Identities = 116/399 (29%), Positives = 189/399 (47%), Gaps = 59/399 (14%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML-- 63
F +G S L++A+ +P+ IQK+ IP IL+G + + + +G+GKTIA+ +L
Sbjct: 53 FSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLGN 112
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRP 123
TK E Q M V+TPTREL+ Q+ E + + I+V S ++ I
Sbjct: 113 TKIGERTQVM---VVTPTRELSTQVTEVISGLAGPLGIKVF------SALKNKITDSIGE 163
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDL--ATCVSILPPK 181
++ +PG + ++ G+ G VK +VLDEADILL KD+ IL
Sbjct: 164 EVVVGSPGTILK-LMELGKLNYKG---VKMIVLDEADILL----DKDMMGTQTFRILKLI 215
Query: 182 NKRQNLLFTATMTDQVK---------ALSDAPQTEGKPP---VFTFEVESVDNVAIPKTL 229
+ Q + F+AT ++QVK A+ + GKP +F E E + K+L
Sbjct: 216 SGAQMIFFSATFSEQVKQTIEFYAPDAVKMYEERNGKPDEIKLFYIEAEGENKRRALKSL 275
Query: 230 ETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQ 289
Y+ L+ S IIFV+ T LR+ L+ V+ LH
Sbjct: 276 ----------------YEYLSI-----SQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGD 314
Query: 290 MPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP-----GNPDTFIXXX 344
+ +ER +V FR+ +++L+ TDV SRG+DIP V L+VNYD+P + T+I
Sbjct: 315 LEIEEREKAVGDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRI 374
Query: 345 XXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFT 383
+ FV +++++ + ++ + ++FT
Sbjct: 375 GRSGRFGRTGFVVDFVRDEELEAYLSFQKELKFASKKFT 413
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 132 bits (332), Expect = 1e-30
Identities = 105/389 (26%), Positives = 185/389 (46%), Gaps = 24/389 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
++ G + L++ + ++ P+ IQKA I I+ GRD A +G+GKT AFA L
Sbjct: 40 WEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQI 99
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+VL TRE+A Q A +F G M RVA++ GG I + L+K+PH
Sbjct: 100 CDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHI 159
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
++ TPGR+ H++N E + + +K V+DEAD +L F + + + + K++ Q
Sbjct: 160 VVGTPGRV-EHMININELS---MDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQ 215
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFE-----VESVDNVAIPKTLETTY------L 234
+F+AT ++ +S+ + P + ++ + I E +
Sbjct: 216 IAMFSATYDEEELRVSE--EILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDY 273
Query: 235 LVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQE 294
L+P+ V LY I ++ +S I+F+N A I+ L + + +++ Q E
Sbjct: 274 LLPKLVT---LYDIFRKQRLGQS--IVFINSKEDARIVYDWLIRHEWECELISAELTQAE 328
Query: 295 RTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPG--NPDTFIXXXXXXXXXXX 352
R ++ RFR R LI++ + SRG+DI + +V D+P T+I
Sbjct: 329 RERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGR 388
Query: 353 XXESLCFVTEKDIQRVEAIEERINKKMEE 381
++ V E +++ ++AIE N ++E
Sbjct: 389 KGIAINIVYEHELKNLKAIERFYNTTIKE 417
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 131 bits (330), Expect = 2e-30
Identities = 100/388 (25%), Positives = 184/388 (46%), Gaps = 20/388 (5%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+ ++ A+ P+ +Q CIP+ + G D + A +G GKT F
Sbjct: 40 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 99
Query: 63 LTKWS-EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQ 120
L + D +V+ TRELA QI++++ F M ++VA+ GG +I + L+
Sbjct: 100 LQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLK 159
Query: 121 K-RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSIL 178
PH ++ TPGR+ + N + LK +K VLDE D +L + +D+
Sbjct: 160 SGTPHIVVGTPGRILALIRNKKLN----LKLLKHFVLDECDKMLEQLDMRRDVQEIFRST 215
Query: 179 PPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIP-KTLETTYLLVP 237
P + +Q ++F+AT++ ++ + + EV D + L+ Y+ +
Sbjct: 216 P--HGKQVMMFSATLSKDIRPVCKKFMQD------PMEVYVDDEAKLTLHGLQQHYVNLK 267
Query: 238 EHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
E+ K L+++L ++ + +IFV L + L + +H M Q+ER N
Sbjct: 268 ENEKNKKLFELLDVLEF--NQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLN 325
Query: 298 SVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESL 357
Q+F+ R+L+AT++ RG+DI V +V NYD+P + DT++ ++
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 358 CFVT-EKDIQRVEAIEERINKKMEEFTD 384
FV+ E D + + +++R + + E +
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNISELPE 413
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 131 bits (329), Expect = 2e-30
Identities = 113/442 (25%), Positives = 198/442 (44%), Gaps = 33/442 (7%)
Query: 13 KWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQ- 71
K L+ L +PT IQ CIP L RD + TGSGKT+AF P++ + +D Q
Sbjct: 131 KRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQT 190
Query: 72 -GMFGIVLTPTRELAMQIAEQFTAFGSAMNIR----VAIVVGGESI---VQQAIELQKRP 123
G+ G++++PT+ELA QI + + + + + + +S+ ++ + K+
Sbjct: 191 AGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKY 250
Query: 124 HFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNK 183
II+TP RL V N D L +VK L+ DEAD L +TF + +S +
Sbjct: 251 DIIISTPLRLIDVVKNEALD----LSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSL 306
Query: 184 RQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKES 243
R+ +F+AT+ V+ ++ + + + + + N+ E + +
Sbjct: 307 RK-AMFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNI------EQKLIFCGNEEGKL 359
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
+ L E K IIF+ A+ L L + V +H++ +R ++RF+
Sbjct: 360 IAIRQLVQEGEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFK 419
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEK 363
LI TDV +RG+D V LV+NYD+PG+ ++ +++ F T++
Sbjct: 420 TGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQ 479
Query: 364 DIQRVEAIEERINKKMEEFTDVGD--TAVIRKSLTKVTAAK----RESLMAMDKEGFGER 417
D ++ I + + E ++ D + RK + K R+ + + K +R
Sbjct: 480 DSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERKQITTVPKMDKAKR 539
Query: 418 RKLQ-------KRKNESKEKTH 432
R+ Q +RKNE K H
Sbjct: 540 RRQQEMIAASKRRKNEELSKKH 561
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 130 bits (328), Expect = 3e-30
Identities = 103/338 (30%), Positives = 169/338 (49%), Gaps = 35/338 (10%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFG---------IVL 78
T IQ+ +P + G+D + A TGSGKT AF P++++ + +G I+L
Sbjct: 322 TPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIIL 381
Query: 79 TPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVL 138
TPTRELA QI + F + + V GG ++ ++ K I+ T GR+ H
Sbjct: 382 TPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFC- 440
Query: 139 NSGEDTIGGLKRVKFLVLDEADILLTET-FSKDLATCVSI--LPPKNKRQNLLFTATMTD 195
ED L + ++LVLDEAD ++ F ++ ++ +P +KRQ ++F+AT
Sbjct: 441 ---EDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSATFPS 497
Query: 196 QVKALSDAPQTEGKPPVFTFEVESVDNV-AIPKTLETTYLLVPEHVKESYLYQIL----- 249
V+ + E + + ++D + A K + + L K L ++L
Sbjct: 498 SVQEAARKLLRED------YTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDID 551
Query: 250 --TSEK----YVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
T+EK +VK + I+FV + A+ L + + V ++H Q+ER+ +++ FR
Sbjct: 552 TYTTEKNSDVFVKKT-IVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFR 610
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ A VLIAT V RGLDI V+ V+NYD+P N D +I
Sbjct: 611 SGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYI 648
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 130 bits (327), Expect = 4e-30
Identities = 108/394 (27%), Positives = 180/394 (45%), Gaps = 72/394 (18%)
Query: 12 SKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK----WS 67
S ++++L + ++PT IQK IP I++G D +G A+TGSGKT+A+ P++ K +S
Sbjct: 179 SMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFS 238
Query: 68 EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM----NIRVAIVVGGESI--VQQAIELQK 121
+ + ++ TPTRELA Q+ + + + + GG SI Q+ ++
Sbjct: 239 QKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDN 298
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
+IATPGR +L I +V L+LDEAD LL + + + L +
Sbjct: 299 SGQIVIATPGRFL-ELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVE 357
Query: 182 NKR------------QNLLFTATMT-DQVKALSDAPQTE--------------------- 207
++ Q L+F+AT + D LS + Q +
Sbjct: 358 RRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSK 417
Query: 208 ----GKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFV 263
KP + ES + ++ + + P ++ Y Y LT + +IF
Sbjct: 418 IHFNSKPVIIDTNPES----KVSSQIKESLIECPPLERDLYCYYFLT---MFPGTTLIFC 470
Query: 264 NRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAAR--------------- 308
N + + L L +L + +HS M Q+ R S++RF+ Q+A+
Sbjct: 471 NAIDSVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLS 530
Query: 309 -VLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
VLIA+DVA+RGLDIP V+ V++Y +P + D +I
Sbjct: 531 TVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYI 564
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 130 bits (327), Expect = 4e-30
Identities = 108/396 (27%), Positives = 174/396 (43%), Gaps = 26/396 (6%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
NS ++ G + ++ + +P+ IQ P +L G+DCIG + TGSGKT+AF P
Sbjct: 83 NSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPA 142
Query: 63 LTKWS-----------EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGES 111
L E F +VL+PTRELA QI + + S + + GG S
Sbjct: 143 LLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKY-SYNGYKSVCLYGGGS 201
Query: 112 IVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDL 171
+Q + +IATPGRL + D + L V ++VLDEAD +L F +
Sbjct: 202 RPEQVEACRGGVEIVIATPGRLT----DLSNDGVISLASVTYVVLDEADRMLDMGFEVAI 257
Query: 172 ATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLET 231
+ + P R L +AT + V+ L+D E V ++ K++
Sbjct: 258 RRILFEIRPD--RLVALTSATWPEGVRKLTDKYTKEA-----VMAVNGSLDLTSCKSVTQ 310
Query: 232 TYLLVPEH---VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHS 288
+ VP ++ + LT+ IIFV V A+ L + LH
Sbjct: 311 FFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHG 370
Query: 289 QMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXX 348
Q +R S+ R+ ++L+ATD+ASRG+D+P + V+NYD P + + ++
Sbjct: 371 GRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTG 430
Query: 349 XXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFTD 384
E++ F+ D E + + + K +E D
Sbjct: 431 RAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPD 466
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 130 bits (326), Expect = 5e-30
Identities = 111/351 (31%), Positives = 169/351 (47%), Gaps = 32/351 (9%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLT-----KWSEDPQGMFGIVLTPTR 82
T +Q CIPE+LKG+D + + TG+GKT+AF AP+L+ K P G+ +V+TPTR
Sbjct: 28 TEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRP-GVTAVVITPTR 86
Query: 83 ELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGE 142
ELA+QI E F +++ +GG SI + +++ + TPGRL V G+
Sbjct: 87 ELALQIREVAGLF----DVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIV---GK 139
Query: 143 DTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSD 202
+T + LVLDEAD LL F + L ++ LP R LF+AT D V LS
Sbjct: 140 ET-KKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLP--RNRVTGLFSATRNDSVDKLS- 195
Query: 203 APQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIF 262
+ + PV +V N +P LE Y++V K L I+T + CI+F
Sbjct: 196 --RVFLRNPVSI----NVGNNEMPVALE--YIVVSPMEKLLVLMDIVTGRR-----CIVF 242
Query: 263 VNRTVTAEILRRTLKSLDV-RVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLD 321
+ + + +H ++ Q ER + F Q +L TDVA+RG+D
Sbjct: 243 FATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEF-FQRDGLLFCTDVAARGID 301
Query: 322 IPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIE 372
V+LVV++D+P + + ES+ FV + VE ++
Sbjct: 302 FRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMPNERAYVEFLK 352
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 129 bits (324), Expect = 9e-30
Identities = 116/390 (29%), Positives = 181/390 (45%), Gaps = 42/390 (10%)
Query: 1 MSNS-EFKSLGCS--KWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIA 57
MS S E+ +LG S W+ L+ M T +Q + IP + +D + + TGSGKT A
Sbjct: 1 MSKSLEWDNLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAA 60
Query: 58 FAAPMLTKWSEDPQG--------MFGIVLTPTRELAMQIAEQFTAF-----GSAMNIRVA 104
F P+L K ++ +++ PTREL+ QI +F I+
Sbjct: 61 FVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQ 120
Query: 105 IVVG-GESIVQQAIE--LQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADI 161
++VG E+ V+ + L+ RP +I TPGR+ + T +V+DEAD
Sbjct: 121 LLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKT----SACSMVVMDEADR 176
Query: 162 LLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVD 221
LL +F KD + +LP +R+ LF+ATM A SD +T + PV V S +
Sbjct: 177 LLDMSFIKDTEKILRLLP--KQRRTGLFSATMRS---AGSDIFKTGLRNPV-RITVNSKN 230
Query: 222 NVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEIL--------R 273
P +L+ Y +V K L IL + K+ K CI++ V+ +
Sbjct: 231 QA--PSSLKLNYCVVNPAEKLQLLVSILNNYKFKK--CIVYFPTCVSVSYFYSFIQYLGK 286
Query: 274 RTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAAR-VLIATDVASRGLDIPIVELVVNYD 332
R + +V + SLH ++ RT ++ F + VL TDVA+RG+DIP V+LV+ D
Sbjct: 287 RNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLD 346
Query: 333 IPGNPDTFIXXXXXXXXXXXXXESLCFVTE 362
P N D F+ +++ F+ E
Sbjct: 347 PPTNTDMFMHRCGRTGRANRVGKAITFLNE 376
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 127 bits (320), Expect = 2e-29
Identities = 102/343 (29%), Positives = 156/343 (44%), Gaps = 34/343 (9%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGM- 73
L E L A I IQ + +L G D +G A TG GKT+AF P+L P
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSK 166
Query: 74 ----FG-----IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPH 124
+G +VL PTRELA Q+A F A+G ++ + + GG+S Q +L++
Sbjct: 167 RKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVD 226
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
++ TPGR+ H+ D ++F VLDEAD +L F +D+ + + K
Sbjct: 227 IVVGTPGRIKDHIERQNLD----FSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKV 282
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTF------EVESVDNVAIPKTLETTYLLVPE 238
Q LLF+AT+ VK +S+ + + SV ++AIP L+P+
Sbjct: 283 QTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPD 342
Query: 239 HVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNS 298
+ S IIF V L L +LH ++PQ +R +
Sbjct: 343 ----------IISCYSSGGQTIIFAETKVQVSELSGLLDG----SRALHGEIPQSQREVT 388
Query: 299 VQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ FR L+AT+VA+RGLDI V+L++ + P + +I
Sbjct: 389 LAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYI 431
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 127 bits (319), Expect = 3e-29
Identities = 109/405 (26%), Positives = 186/405 (45%), Gaps = 46/405 (11%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML- 63
+F L + +++A+ + QPT IQ IP +L+G+D + A TGSGKT +A P++
Sbjct: 10 QFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQ 69
Query: 64 ----TKWSEDPQGMFGIVLTPTRELAMQ---IAEQFTAFGSAMNIRVA-IVVGGESIVQQ 115
+K + Q + +VL PT++L Q + EQ +RVA I V Q
Sbjct: 70 KILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVE-SCGKVVRVADIADSSNDTVTQ 128
Query: 116 AIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCV 175
L + P ++ATP L + + ++ LK V+ LV+DEAD++ + KD +
Sbjct: 129 RHALSESPDIVVATPANLLAY---AEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLI 185
Query: 176 SILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLL 235
LPP Q +L +AT+TD V + PV T ++E + V L +L
Sbjct: 186 KHLPP--IYQAVLVSATLTDDVVRMKGLCLNN---PV-TLKLEEPELVP-QDQLSHQRIL 238
Query: 236 VPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQER 295
E+ K + LY +L + ++ IIFVN +R L+ +R L+S++P R
Sbjct: 239 AEENDKPAILYALL-KLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIR 297
Query: 296 TNSVQRFRAQAARVLIATD-------------------------VASRGLDIPIVELVVN 330
+++ +F ++IA+D ASRG+D V V+N
Sbjct: 298 IHTISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVIN 357
Query: 331 YDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERI 375
+D P + ++I L FV+ K+ + +++E+++
Sbjct: 358 FDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEKKL 402
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 125 bits (315), Expect = 9e-29
Identities = 111/415 (26%), Positives = 187/415 (44%), Gaps = 49/415 (11%)
Query: 1 MSNSE---FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIA 57
M +SE F+ +G L++A+ + +PT IQ+ IP L+G+D + A TGSGKT A
Sbjct: 1 MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA 60
Query: 58 FAAPMLT----KWSEDP---QGMFGIVLTPTRELAMQIAE--QFTAFGSAMNIRVAIVVG 108
+A PML + + P Q + G+VL PT+ELA Q Q A A ++RVA V
Sbjct: 61 YAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSA 120
Query: 109 GESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFS 168
E V Q L ++P ++ TP R+ H+ +D++ ++ LV+DEAD+L + F
Sbjct: 121 AEDSVSQRAVLMEKPDVVVGTPSRILSHL---QQDSLKLRDSLELLVVDEADLLFSFGFE 177
Query: 169 KDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKT 228
++L + + LP Q L +AT + V+AL + PV T +++ + P
Sbjct: 178 EELKSLLCHLP--RIYQAFLMSATFNEDVQALKELILHN---PV-TLKLQE-SQLPGPDQ 230
Query: 229 LETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHS 288
L+ ++ + L L ++ ++FVN + LR L+ + L+
Sbjct: 231 LQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNG 290
Query: 289 QMPQQERTNSVQRFRAQAARVLIATDV---------------------------ASRGLD 321
++P + R + + +F +IATD +RG+D
Sbjct: 291 ELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGID 350
Query: 322 IPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERIN 376
V V+N+D+P P+ +I L FV + + IEE ++
Sbjct: 351 FHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLS 405
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 125 bits (314), Expect = 1e-28
Identities = 121/418 (28%), Positives = 188/418 (44%), Gaps = 38/418 (9%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
S FK L CS L++AL + PT IQK CIP ++ GR+ I A TG GKT+ F P++
Sbjct: 99 SSFKDL-CSPLLIKALGK-EYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPII 156
Query: 64 TKWSE--DPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK 121
+ + PQ +++PTREL QI + + + IRV + G + Q +
Sbjct: 157 ERHRQMKKPQAC---IISPTRELCEQIRVEASKLVAGSRIRVVSIYGKK----QDLPSYS 209
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPK 181
++ATPGRL + D L ++ VLDEAD LL F + +P
Sbjct: 210 GVDIVVATPGRLIDLLHRKKVD----LSEIRMFVLDEADKLLDMGFEIPIREIHGFVPKN 265
Query: 182 NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDN-------VAIPKTLETTYL 234
Q LF+AT + ++ + + E K + E++ N V K + L
Sbjct: 266 T--QTCLFSATYSPKLTRMINYFLPEDKVSI-EISSETLKNIRQEIVEVRNKKKMLLNIL 322
Query: 235 LVPE-HVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQ 293
P+ ++K S+ ++ + ++FV R + + LK + SLH Q
Sbjct: 323 KGPDINLKGSWRMEVQPDK------VLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQA 376
Query: 294 ERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXX 353
+R +++ FR V++AT VA+RG+DI V+LV+NYDIP + +I
Sbjct: 377 DRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKS 436
Query: 354 XESLCFV---TEKDIQR--VEAIEERINKKMEEFTDVGDTAV-IRKSLTKVTAAKRES 405
+S+ F D+++ VE + E N T D R KVTA K S
Sbjct: 437 GKSISFYDGGMTADLKKALVEVLRESKNAVPPFLTGASDEDFNARFERLKVTADKEMS 494
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 124 bits (311), Expect = 3e-28
Identities = 118/428 (27%), Positives = 195/428 (44%), Gaps = 58/428 (13%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
S F L A++ + +PT++Q IP L+G+D + A TGSGKT A+ P
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIP 71
Query: 62 ML------TKWSEDPQGMFGIVLTPTRELAMQ---IAEQFTAFGSAMNIRVAIVVGGESI 112
+L + E+ +G+F ++L PTRELA Q + E+ TAF S +IR V S
Sbjct: 72 ILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCS-KHIRFINVATNSSD 130
Query: 113 VQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLA 172
Q L P +IATP R HV + + L ++KFLV+DEAD++L+ +++D+
Sbjct: 131 TVQRPLLLDLPDIVIATPSRCVVHVASG----VLPLDKLKFLVIDEADLMLSFGYNEDMK 186
Query: 173 TCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETT 232
T LP Q+ L +AT++ + +L F + D A K T
Sbjct: 187 TLSRSLP--RGTQSFLMSATLSKNIASLQKLVCRN------PFILAVKDKEASGKL--TQ 236
Query: 233 YLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQ 292
Y++ + L IL + +K +IFVN L+ L+ ++ L+S++P
Sbjct: 237 YVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPV 296
Query: 293 QERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXX 352
R + ++++ +++IATD G+ I EL N D
Sbjct: 297 NSRLHILEQYNKGLYQIIIATD--ESGMMGEIEELENNVD-------------------- 334
Query: 353 XXESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKE 412
FV E+ I + +++ K +E DV D +++ + K +K++ + DKE
Sbjct: 335 ------FVEEEVISTDQPTLDKM--KDQENADVNDESILAAAKDK---SKKKKRVKQDKE 383
Query: 413 GFGERRKL 420
+G R L
Sbjct: 384 -YGVARGL 390
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 122 bits (307), Expect = 8e-28
Identities = 105/401 (26%), Positives = 182/401 (45%), Gaps = 25/401 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + S+ ++ L + IQ + G+D I A TG+GKT +FA P++ K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 66 WSEDPQGMFG------IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+ Q +VL PTRELA Q+++ F+ ++ VA GG Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 237
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ ++ TPGR+ H+ N D L ++K +VLDE D +L F+ + +S+
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLD----LTKLKHVVLDEVDQMLDMGFADQVEEILSVAY 293
Query: 180 PKNKRQN---LLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETT-YLL 235
K+ N LLF+AT V ++ K T+E + KT T +L
Sbjct: 294 KKDSEDNPQTLLFSATCPHWVFNVAK------KYMKSTYEQVDLIGKKTQKTAITVEHLA 347
Query: 236 VPEH--VKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQ 293
+ H + + + ++ + IIF A+ L + ++ SLH +PQ+
Sbjct: 348 IKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN-SAIKQDAQSLHGDIPQK 406
Query: 294 ERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXX 353
+R +++ FR + VL+AT+VA+RGLDIP V+LV+ P + +++I
Sbjct: 407 QREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRT 466
Query: 354 XESLCFVTEKDIQRVEAIEERINKKMEEFTDVGDTAVIRKS 394
+CF K+ ++ +E++ K + T +I+ S
Sbjct: 467 GVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKAS 507
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 120 bits (302), Expect = 3e-27
Identities = 114/393 (29%), Positives = 178/393 (45%), Gaps = 40/393 (10%)
Query: 13 KWLVEALNAMKIVQPTAIQKACIPEILKGRD--CIGGANTGSGKTIAFAAPM---LTKWS 67
K + +A+ M+ T +Q+ I IL D I A TG+GKT AF P+ L
Sbjct: 115 KEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 174
Query: 68 EDPQGMF-GIVLTPTRELAMQIAEQFTAFGSAMNIRV-----AIVVGGESIVQQAIELQK 121
D Q M +++ PTR+LA+QI + MN + +VGG ++ K
Sbjct: 175 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHD-MNYGLKKYACVSLVGGTDFRAAMNKMNK 233
Query: 122 -RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
RP+ +IATPGRL VL + + V + VLDEAD LL F DL T IL
Sbjct: 234 LRPNIVIATPGRLID-VLEKYSNKF--FRFVDYKVLDEADRLLEIGFRDDLETISGILNE 290
Query: 181 KNKR-----QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEV--------ESVD-NVAIP 226
KN + + LLF+AT+ D+V+ L++ + K +F V E +D +V I
Sbjct: 291 KNSKSADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNEPEAHERIDQSVVIS 349
Query: 227 KTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKS---LDVRV 283
+ + EH+K+ E+ IIF L LK+ D+ +
Sbjct: 350 EKFANSIFAAVEHIKKQI------KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPI 403
Query: 284 TSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXX 343
H ++ Q +RT+ V+RF+ + +L+ TDV +RG+D P V V+ +P +I
Sbjct: 404 LEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 463
Query: 344 XXXXXXXXXXXESLCFVTEKDIQRVEAIEERIN 376
S+ F+ + ++ V +E+ N
Sbjct: 464 IGRTARSGKEGSSVLFICKDELPFVRELEDAKN 496
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 118 bits (296), Expect = 2e-26
Identities = 95/316 (30%), Positives = 162/316 (51%), Gaps = 20/316 (6%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAMQ 87
T IQ A ++ +G + G A TG+GKT+AF P+L++ + ++L P++ELAMQ
Sbjct: 19 TPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQVLILAPSQELAMQ 78
Query: 88 IAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK-RPHFIIATPGRLAHHVLNSGEDTIG 146
+G+ +++ V ++GG + +QA +L+K +PH ++ T GR+ +L+ G +
Sbjct: 79 TTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVL-TMLDGGALKLN 137
Query: 147 GLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQT 206
GL+ V + DEAD +L++ L + LP Q LF+AT +K ++D
Sbjct: 138 GLQTV---IFDEADAMLSDERRDSLQALAAQLP--TDVQLGLFSATSGVDLKYVADTFGQ 192
Query: 207 EGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRT 266
E +P SV A P + + V + K S L Q+ + K ++F N
Sbjct: 193 EVRP-------VSVGTDA-PAAITHEFQYVDQKAKASLLIQLARN----KQQALVFFNTI 240
Query: 267 VTAEILRRTLKSLDVRVTSLHSQMPQQ-ERTNSVQRFRAQAARVLIATDVASRGLDIPIV 325
++ TL+ V S+ S +Q +R ++++ F+ +L+ TDVA+RGLDI +
Sbjct: 241 SGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTDVAARGLDIEDL 300
Query: 326 ELVVNYDIPGNPDTFI 341
LVVN +P T+I
Sbjct: 301 PLVVNAQLPQRKKTYI 316
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 118 bits (296), Expect = 2e-26
Identities = 105/397 (26%), Positives = 186/397 (46%), Gaps = 43/397 (10%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED----- 69
L + L MK+ +PT IQ+A I+ G D + A+TGSGKT+AF P + K E+
Sbjct: 747 LHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDR 806
Query: 70 ------PQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQK-- 121
P +++ PTREL Q ++ + GG S L+
Sbjct: 807 DVTDEKPSPRL-LIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFS 865
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILL-TETFSKDLATCVSILPP 180
+ + ++AT GRL V N+GE + L ++K++VLDEAD ++ + F ++++ + P
Sbjct: 866 QLNILVATMGRLQDFV-NAGEVS---LSKMKYIVLDEADRMVDSNDFGEEVSKIIGS-PG 920
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQ--TEGKPPVFTFEVESVDNVAIP-KTLETTYLLVP 237
+ +Q +LF+A+ ++ +++ D P+ EG + + VD + ++ L VP
Sbjct: 921 ERTQQTVLFSASFSEDLQS-DDLPKFVKEG------YTMLQVDKFGTANEKIDQKILPVP 973
Query: 238 EHVKESYLYQILTSEKYV----------KSSCIIFVNRTVTAEILRRTLKSLDVRVTSLH 287
K +Y++L ++ K +IFVN + L + S V S+H
Sbjct: 974 RTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMH 1033
Query: 288 SQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNP--DTFIXXXX 345
S Q++R ++ FR + ++A++V +RGL+I ++ VVNYD+P D ++
Sbjct: 1034 SYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIG 1093
Query: 346 XXXXXXXXXESLCFV-TEKDIQRVEAIEERINKKMEE 381
S FV E D + + +N+ +E
Sbjct: 1094 RTGRAGFTGTSTAFVDVENDTDIIPCLVSILNEAKKE 1130
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 117 bits (294), Expect = 3e-26
Identities = 100/423 (23%), Positives = 178/423 (41%), Gaps = 48/423 (11%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ LG L+ AL I +PT IQ++ IP IL+G+D + A TGSGKT+A+ P+L K
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQK 107
Query: 66 W------SEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIV--VGGESIVQQAI 117
S+ +L P+REL Q+ + ++ +++ V S
Sbjct: 108 LFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRN 167
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSI 177
L P +++TP + + + + LVLDEAD+LL+ + +L + SI
Sbjct: 168 ALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSI 227
Query: 178 LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP 237
+P + Q LL +AT + V+ L P V T ++ A+P ++ ++
Sbjct: 228 IP--RRCQCLLMSATTSSDVEKLKKL--ILHNPIVLTLTEDNDKEEAVPSNVQQFWISCS 283
Query: 238 EHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
K ++ +L E V+ +IF+N L+ L+ ++ L+ ++PQ R +
Sbjct: 284 AQDKLLHILALLKLE-VVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLH 342
Query: 298 SVQRFRAQAARVLIATDVAS-----------------------------------RGLDI 322
+++F A LIATD S RG+D
Sbjct: 343 ILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDF 402
Query: 323 PIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEF 382
V V+N+D+P + +I S+ ++ +++ E I+ + +
Sbjct: 403 KKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKD 462
Query: 383 TDV 385
D+
Sbjct: 463 IDI 465
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 117 bits (292), Expect = 4e-26
Identities = 96/324 (29%), Positives = 154/324 (46%), Gaps = 20/324 (6%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG-RDCIGGANTGSGKTIAFAAP 61
++ F++ L++A+ + PT IQ IP L+ RD I A TGSGKT+A+ P
Sbjct: 16 STTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIP 75
Query: 62 MLTKWSE--------DPQGMFGIVLTPTRELAMQI---AEQFTAFGSAMNIRVAIVVGGE 110
++ E + G GI+L PTRELA Q+ E+ + S +IR +
Sbjct: 76 VIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSK-DIRTLNISSDM 134
Query: 111 SIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKD 170
S + L +P I+ TPG+L +L + ++I L +KFLV+DE D++LT + D
Sbjct: 135 SDSVLSTLLMDQPEIIVGTPGKLLD-LLQTKINSIS-LNELKFLVVDEVDLVLTFGYQDD 192
Query: 171 LATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLE 230
L LP K Q L +AT+ D ++AL + P + F E ++ L
Sbjct: 193 LNKIGEYLPLKKNLQTFLMSATLNDDIQALKQ--KFCRSPAILKFNDEEINK--NQNKLL 248
Query: 231 TTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQM 290
Y+ V E K Y ++ +K +IFVN L+ ++ ++ L+S++
Sbjct: 249 QYYVKVSEFDKFLLCY-VIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSEL 307
Query: 291 PQQERTNSVQRFRAQAARVLIATD 314
P R + V +F ++LIATD
Sbjct: 308 PVNSRQHIVDQFNKNVYQLLIATD 331
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 117 bits (292), Expect = 4e-26
Identities = 116/428 (27%), Positives = 190/428 (44%), Gaps = 68/428 (15%)
Query: 1 MSNSEFKSLGCSKWLVEALNA-MKIVQPTAIQKACIPEILKG---RDCIGGANTGSGKTI 56
+ +F SLG S LV L M+I +PT+IQK IP+I+ D A TGSGKT+
Sbjct: 140 LKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTL 199
Query: 57 AFAAPMLTK------WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRV-AIVVGG 109
++ P+++ + G F +V+ PTRELA QI + S + V +++GG
Sbjct: 200 SYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGG 259
Query: 110 ESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSK 169
E + L+K +FII TPGR+ H+ N+ + ++++VLDE D L+ F +
Sbjct: 260 ERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDE 319
Query: 170 DLATCVSILP---------PK--NKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVE 218
++ + I+ PK +K ++L +AT+TD V L + + K + +
Sbjct: 320 TISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKD 379
Query: 219 SVDNVAIPKTLETTYLLVPEHVKESYLYQILT--SEKYVKSS-------CIIFV------ 263
S P L +VP ++ L L ++ ++ S I+FV
Sbjct: 380 SDIVTVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSV 439
Query: 264 -------------NRTVTAEILRRTLK------------SLDVRVTSLHSQMPQQERTNS 298
++ +T + +R K DV + LH + QQ RT++
Sbjct: 440 EFHYDAFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTST 499
Query: 299 VQRFRA--QAAR----VLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXX 352
+Q F +A + ++ TDVASRGLD+P V V+ D P + +
Sbjct: 500 LQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGE 559
Query: 353 XXESLCFV 360
ESL F+
Sbjct: 560 KGESLLFL 567
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 117 bits (292), Expect = 4e-26
Identities = 110/385 (28%), Positives = 181/385 (46%), Gaps = 33/385 (8%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFA 59
S F+ L L++ + +MK +P+ IQ+ +P +L R+ IG + +G+GKT AFA
Sbjct: 112 SVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFA 171
Query: 60 APMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
ML++ I L P+RELA QI + T G ++ A + I+
Sbjct: 172 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDA 231
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
Q +I TPG + + D + +K VLDEAD +L + D + + L
Sbjct: 232 Q----IVIGTPGTVMDLMKRRQLDA----RDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 283
Query: 180 PKNKRQNLLFTATMTDQVKALSD--APQT-EGKPPVFTFEVESVDNVAIP-KTLETTYLL 235
P+N Q +LF+AT +++V+ ++ AP E + VE + + + ++ E Y +
Sbjct: 284 PRNT-QIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNV 342
Query: 236 VPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQER 295
+ E LY +LT IIF + TAE + R + + V L + +R
Sbjct: 343 LVE------LYGLLTI-----GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQR 391
Query: 296 TNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP----GNPD--TFIXXXXXXXX 349
+ FR ++VL+ T+V +RG+D+ V LVVNYD+P G PD T++
Sbjct: 392 DAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGR 451
Query: 350 XXXXXESLCFV-TEKDIQRVEAIEE 373
S+ FV +K + + AI+E
Sbjct: 452 FGRVGVSINFVHDKKSWEEMNAIQE 476
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 117 bits (292), Expect = 4e-26
Identities = 114/452 (25%), Positives = 201/452 (44%), Gaps = 43/452 (9%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F S L+ L+ I QP+ IQ IP + + R+ + A TGSGKT+AFA P++ +
Sbjct: 128 FSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDE 187
Query: 66 W----------SEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQ 115
S + + +VL PTRELA Q +F + + +I A G E+ +Q
Sbjct: 188 ILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISAANFSGEETDIQH 247
Query: 116 AIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLT------ETFSK 169
A +++TP R+ H+ D I +++LV+DE+D L + F
Sbjct: 248 A-------DILVSTPNRIVFHL-----DKID-TSSLRWLVVDESDRLFEVVEGQDKCFRN 294
Query: 170 DLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTL 229
LA K R F+AT + +V+ + + + + N ++ + L
Sbjct: 295 QLAAIYKACDAKCTRV-AFFSATFSHEVEKW--CKENIDEIGMVCVGERNSSNTSVKQKL 351
Query: 230 ETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLD--VRVTSLH 287
TY + K + + TS K ++FV A L + L ++D ++V S++
Sbjct: 352 --TYCGTEDGKKIAIRNLLRTS---FKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSIN 406
Query: 288 SQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXX 347
S +ER +++RFR VL+ T++ RGLD+ V LV+NYD+P + ++I
Sbjct: 407 SGKSDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRT 466
Query: 348 XXXXXXXESLCFVTEKDIQRVEAIEERINKK----MEEFTDVGDTAVIRKSLTKVTAAKR 403
++ + T+ D++ +++I I + E ++ + RK A KR
Sbjct: 467 GRAGKSGHAVTYFTDADMKYIKSIATVIRQSGFDVPEYLMEMKKVSRDRKKDMLKHAPKR 526
Query: 404 ESLMAMDKEGFGERRKLQKRKNESKEKTHRRT 435
+ + ++ +++ L K E K K T
Sbjct: 527 HKIAIVKEQVIKKKKMLAKAAAEEKAKNKTET 558
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 116 bits (290), Expect = 7e-26
Identities = 116/418 (27%), Positives = 181/418 (42%), Gaps = 50/418 (11%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
S F +GCS+ +++AL +P IQ ++ G+ CI +GSGKT+A+ P
Sbjct: 372 SRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVP 431
Query: 62 MLTKWSED---------PQGMFGIVLTPTRELAMQIAEQFTAFG-SAMNIRVAIVVGGES 111
++ + E+ P IVL PT ELA Q+ + S + R +V GG
Sbjct: 432 VIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFR 491
Query: 112 IVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILL-TETFSKD 170
Q L++ +IATPGR +++N G I GL ++ +LDE DIL + F
Sbjct: 492 QRTQLENLEQGVDVLIATPGRFT-YLMNEG---ILGLSNLRCAILDEVDILFGDDEFEAA 547
Query: 171 LATCVSILPPKNKRQNLLFTATMTDQV--KALSDAPQTE-----------GKPPVFTFEV 217
L ++ P Q L TAT+ ++ K + P E F +
Sbjct: 548 LQNLINSSPV--TAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDC 605
Query: 218 ESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLK 277
DN KT ET + K++ L QI+ E+ S IIF N+ T + K
Sbjct: 606 SGDDNA--EKTPETAF-----QNKKTALLQIM--EENPVSKTIIFCNKIETCRKVENIFK 656
Query: 278 SLD-----VRVTSLHSQMPQQERTNSVQRFRA----QAARVLIATDVASRGLDIPIVELV 328
+D + V H+ + Q+ R ++Q F + + + L+ TD ASRG+D V+ V
Sbjct: 657 RVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHV 716
Query: 329 VNYDIPGNPDTFI-XXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFTDV 385
V +D P +P ++ ++ FV K + I ER N+K DV
Sbjct: 717 VLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIER-NEKGHPVHDV 773
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 115 bits (287), Expect = 2e-25
Identities = 87/299 (29%), Positives = 147/299 (49%), Gaps = 17/299 (5%)
Query: 43 DCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIR 102
D + A +G+GKT+ F+ + + +++TPTRE+++QI E R
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAPT-GAR 109
Query: 103 VAIVVGGESIVQQAIEL-QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADI 161
++ VGG + I+L Q RP +I TPGR+A V + + V F VLDEAD
Sbjct: 110 TSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMN----MSHVDFFVLDEADK 165
Query: 162 LLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVD 221
L+ E F D+ ++ LP RQ +F+AT + L + + F + V
Sbjct: 166 LMDEVFRDDINIIINSLP--QIRQVAVFSATYPRNLDNLLSTFLRDAA--LVRFNADDVQ 221
Query: 222 NVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDV 281
I + Y++ L +L S +YV++ ++F ++ E + LKS +
Sbjct: 222 LFGIKQ-----YVVAKCSPMLEKLTHVLKSIRYVQA--LVFCDQISKCEPIATHLKSSGL 274
Query: 282 RVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTF 340
VT + S M Q++R +V + RA+ ++L+++D+ +RG+D V LVVN D N +T+
Sbjct: 275 DVTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETY 333
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 114 bits (286), Expect = 2e-25
Identities = 105/423 (24%), Positives = 194/423 (45%), Gaps = 43/423 (10%)
Query: 27 PTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP-QGMFGIVLTPTRELA 85
PT IQ IP +L GR+ + A TGSGKT+AF+ P+L + + +G ++++PTRELA
Sbjct: 80 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELA 139
Query: 86 MQIAEQFTAFGSAMNIRVAIVVGGESIVQQ-AIELQKRPHFIIATPGRLAHHVLNSGEDT 144
QI + R+ ++ ++ + K+ ++ TP RL + + +D
Sbjct: 140 SQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLK---QDP 196
Query: 145 IG-GLKRVKFLVLDEADILLTE--TFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALS 201
G L V++LV+DE+D L + T +D + + +K + +F+AT V+
Sbjct: 197 PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWC 256
Query: 202 DAPQTEGKPPVFTFEVESVDNVAIP------KTLETTYLLVPEHVKESYLYQILTSEKYV 255
+++V +V+I +T+E L V + + L + +
Sbjct: 257 K------------LNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGF- 303
Query: 256 KSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDV 315
++FV A+ L L + V +H++ QQ+R N+V FRA VLI T +
Sbjct: 304 NPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTAL 363
Query: 316 ASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKD---IQRVEAIE 372
+RG+D V LV+NYD P + +I +++ F TE D ++ V +
Sbjct: 364 LARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVI 423
Query: 373 ERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLM--AMDKEGFGERRK--LQKRKNESK 428
++ + E+ K K+ + +++ ++ +++E K L+K K++ K
Sbjct: 424 QQAGCPVPEYI---------KGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKAKDKQK 474
Query: 429 EKT 431
+ T
Sbjct: 475 KVT 477
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 113 bits (282), Expect = 6e-25
Identities = 99/365 (27%), Positives = 171/365 (46%), Gaps = 60/365 (16%)
Query: 2 SNSEFKSLGCSKWLVEALNA-MKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
+++ F LG L+ +N +K+ T++QK IP +L+GRD + + TGSGKT+A+
Sbjct: 228 TSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCI 287
Query: 61 PMLTKWS------EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMN-IRVAIVVGGESIV 113
P++ + G + +VL PTRELA+Q + I +++GGE
Sbjct: 288 PVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRK 347
Query: 114 QQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLAT 173
+ L+K + +I+TPGRL H+ ++ R+++LV DEAD +L F KD+
Sbjct: 348 SEKARLRKGINILISTPGRLVDHIKSTKNI---HFSRLRWLVFDEADRILDLGFEKDITV 404
Query: 174 CVSILPPK-NKRQNLLFTATMTDQVKALSD------------------------APQTEG 208
++ + + KRQN+L +AT+T+ V L+D A Q
Sbjct: 405 ILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVC 464
Query: 209 KPPVFTFEVESVDNVAIPKTLETTYLLVPEHVK----ESYLYQILTSEKYVK-----SSC 259
PP + +D+ AIP++L+ +VP ++ +++ Q E+ K SSC
Sbjct: 465 PPPA----GDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSC 520
Query: 260 -IIFVNRTVTAEIL----------RRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAAR 308
++ + ++ + L + S+ ++ LH M Q+ERT Q F
Sbjct: 521 ELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRG 580
Query: 309 VLIAT 313
VL+ T
Sbjct: 581 VLLCT 585
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 112 bits (281), Expect = 8e-25
Identities = 102/420 (24%), Positives = 182/420 (43%), Gaps = 58/420 (13%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML-- 63
F G + +++++ + + +Q++ I L+ ++ +G A TGSGKT AF P++
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQK 150
Query: 64 ----TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+K ++ G +++ PT+EL QI + F A+ AI + + + ++ L
Sbjct: 151 LIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEENSVWL 210
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ R H ++ TPG+L E V +LV+DEAD+LL+ + +++ S LP
Sbjct: 211 EDRSHVVVTTPGKLLRMCSLRPE----YCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLP 266
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLE-TTYLLVPE 238
P Q L+ +AT+ D + L T PV T ++ D +P + + T Y L
Sbjct: 267 P--TYQCLMTSATLKDDMTTLKKLFMT---GPVITIKLTEGD---LPNSDQLTQYQLTCG 318
Query: 239 HVKESYLYQI-LTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTN 297
+E + + + K + I+FVN L L+ ++ L+S MP R +
Sbjct: 319 SDEERFAILVAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCH 378
Query: 298 SVQRFRAQAARVLIATDVA--------------------------------------SRG 319
+ +F + +++IA+DV+ SRG
Sbjct: 379 VINQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRG 438
Query: 320 LDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKM 379
+D V VVN+D P D +I +L F + +E I+E IN++M
Sbjct: 439 IDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEINQQM 498
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 110 bits (275), Expect = 4e-24
Identities = 103/382 (26%), Positives = 181/382 (46%), Gaps = 53/382 (13%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAP 61
S F+ LG L+++L PT +Q A +P I+KG D + + TGSGKT+A+ P
Sbjct: 108 SAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLP 167
Query: 62 MLTK-----------WSEDPQ--GMFGIVLTPTRELAMQIAEQF-TAFGSAMNIRVAIVV 107
+L++ SE+ + + +++ P+REL MQI + G V +V
Sbjct: 168 ILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLV 227
Query: 108 GGESIVQQAIELQK-RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTET 166
GG + ++Q L+K +P ++ TPGR+A T G +FLVLDE D LL+
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHG----CRFLVLDEVDELLSFN 283
Query: 167 FSKDLATCV------SILPPKNK------RQNLLFTATMTDQV----KALSDAP---QTE 207
F +D+ + S PK + RQ +L +AT+ V K+ S P Q
Sbjct: 284 FREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQAN 343
Query: 208 GKPPVFTFEVESVDNVAIPKT------LETTYLLVPEHVKESYL-----YQILTSEKYVK 256
P+ T + + P T ++TT +P +K Y +++ T + V
Sbjct: 344 KVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVH 403
Query: 257 S----SCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIA 312
+ S I F+N + + + L++ + +H + + R+ +++F+ +VL+
Sbjct: 404 ALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVT 463
Query: 313 TDVASRGLDIPIVELVVNYDIP 334
++++RGLD+ +LVVN ++P
Sbjct: 464 NELSARGLDVAECDLVVNLELP 485
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 110 bits (274), Expect = 5e-24
Identities = 79/275 (28%), Positives = 130/275 (46%), Gaps = 51/275 (18%)
Query: 68 EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFII 127
E+ G ++LTPTRELAMQ ++ F + ++VA GG I +Q +L++ ++
Sbjct: 112 EEGDGPIAVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVV 171
Query: 128 ATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNL 187
TPGR+ VL + + L+RV +LVLDEAD + + F
Sbjct: 172 CTPGRMI-DVLAANSGKVTNLRRVTYLVLDEADRMFHKGFE------------------- 211
Query: 188 LFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQ 247
PQ GK V + + ++ EH K L +
Sbjct: 212 ----------------PQVGGKSVVCS-------------DITQNAVICAEHQKFLKLLE 242
Query: 248 ILTSEKYVKSSCIIFVNRTVTA-EILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQA 306
+L Y + S I+FV++ A +I+ + +++ V SLH + Q +R +S+ F+
Sbjct: 243 LL-GMYYDEGSSIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGV 301
Query: 307 ARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+VL+AT VA+RGLD+ + LVVNYD P + + ++
Sbjct: 302 IKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYV 336
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 109 bits (273), Expect = 7e-24
Identities = 92/382 (24%), Positives = 170/382 (44%), Gaps = 27/382 (7%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + S+ ++ L + IQ + +G+D I A TG+GKT +FA P++ +
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 66 WSEDPQGMFG------IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+ + + +VL PTRELA Q+A+ F + VA GG S Q +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDI--TRKLSVACFYGGTSYQSQINHI 256
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSI-- 177
+ ++ TPGR+ H+ + D L +++ +VLDE D +L F++ + +
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLD----LSKLRHVVLDEVDQMLDLGFAEQVEDIIHESY 312
Query: 178 -LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLV 236
++ Q LLF+AT V ++ +V+ V + +L +
Sbjct: 313 KTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE-----QVDLVGKMTQKAATTVEHLAI 367
Query: 237 PEHVKE--SYLYQILTSEKYVKSSCIIF--VNRTVTAEILRRTLKSLDVRVTSLHSQMPQ 292
H + + + +L + IIF + VT + +K LH + Q
Sbjct: 368 QCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ---NAQCLHGDIAQ 424
Query: 293 QERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXX 352
+R +++ FR + +VL+AT+VA+RGLDIP V+LV+ P + +++I
Sbjct: 425 SQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGR 484
Query: 353 XXESLCFVTEKDIQRVEAIEER 374
+CF ++ ++ +E++
Sbjct: 485 TGICICFYQPRERGQLRYVEQK 506
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 109 bits (273), Expect = 7e-24
Identities = 100/398 (25%), Positives = 168/398 (42%), Gaps = 77/398 (19%)
Query: 42 RDCIGGANTGSGKTIAFAAPMLTKWSEDP-QGMFGIVLTPTRELAMQIAEQFTAFGSAMN 100
RD + TGSGKT+++A P++ + P + + +V+ PTR+LA+Q+ + F A A+
Sbjct: 25 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 84
Query: 101 IRVAIVVGGESIVQQAIELQKRP---------------------HFIIATPGRLAHHVLN 139
+ V VG SI + +L K P ++ATPGRL H+ N
Sbjct: 85 LSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINN 144
Query: 140 SGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCV--------SILP------------ 179
+ T L+ +++LV+DE D LL E + L T + S+ P
Sbjct: 145 TKGFT---LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGS 201
Query: 180 ----------------PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNV 223
P + ++ +AT+T L Q + P+F
Sbjct: 202 LQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLI---QLDLHHPLFM--TTGGSRY 256
Query: 224 AIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLD--- 280
+P+ LE L+ +K YL +L S + CIIF T + E RR K L+
Sbjct: 257 RLPEKLECLRLICETGMKPVYLVALLKS--WEGEKCIIF---TSSVETTRRLCKLLNFFG 311
Query: 281 ---VRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNP 337
++ + Q R+ ++ FR +VL+A+D +RG+D+ V V+NYD+P
Sbjct: 312 DPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFA 371
Query: 338 DTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERI 375
TFI ++ +++R + E++
Sbjct: 372 KTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKV 409
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 109 bits (272), Expect = 9e-24
Identities = 108/407 (26%), Positives = 184/407 (44%), Gaps = 35/407 (8%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFA 59
S F+ L L++ + AM +P+ IQ+ +P +L ++ I + +G+GKT AF
Sbjct: 89 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFV 148
Query: 60 APMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQ-QAI 117
ML++ + + L+PT ELA+Q + G +++A V G + + Q I
Sbjct: 149 LAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSI 177
Q +I TPG + + K++K VLDEAD+++ +D + +
Sbjct: 209 SEQ----IVIGTPGTVLDWC---SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQR 261
Query: 178 LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP 237
+ P+N Q LLF+AT D V + + E E++D T++ Y+L
Sbjct: 262 MLPRNC-QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD------TIKQYYVLCS 314
Query: 238 EHVKESY----LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQ 293
++ LY +T + +IF + TA L L +V L +M +
Sbjct: 315 SRDEKFQALCNLYGAITI-----AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVE 369
Query: 294 ERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP----GNPD--TFIXXXXXX 347
+R ++RFR +VL+ T+V +RG+D+ V +V+N+D+P GNPD T++
Sbjct: 370 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 429
Query: 348 XXXXXXXESLCFVTEKDIQRV-EAIEERINKKMEEFTDVGDTAVIRK 393
++ V K + I+E NKK+E D D I K
Sbjct: 430 GRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL-DTDDLDEIEK 475
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 109 bits (272), Expect = 9e-24
Identities = 91/370 (24%), Positives = 166/370 (44%), Gaps = 22/370 (5%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMF 74
L+ + +P+AIQK+ + G+D + GSGKT+ +L + +
Sbjct: 7 LLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDCEDAHLQ 66
Query: 75 GIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLA 134
I+L P R +A + EQ + G +N+ A +G ++ + K H ++ TP
Sbjct: 67 VILLAPQRGMAQRAHEQLKSLGRNLNVN-ATCLGFDTTAEN----DKISHVLMGTP---K 118
Query: 135 HHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMT 194
+ N DT R+K VLDEAD +L++ F + +P Q +L +ATM
Sbjct: 119 DFLSNIPSDT----SRIKMFVLDEADEMLSKGFKDQIYEVFRSMP--QDVQVVLLSATMP 172
Query: 195 DQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKY 254
+V D + P+ + D + + + + + K + L +L + +
Sbjct: 173 SEVL---DVTNRFMRDPIRILVKK--DELTLEGIRQFYINVQKDEWKFNCLCDLLKTSR- 226
Query: 255 VKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATD 314
++ +IF N L L S+ ++V+ H M ER + V+ F ++ RVL+ TD
Sbjct: 227 -ETQALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTD 285
Query: 315 VASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEER 374
+ +RG++I L++NYD+ GN + ++ + F TE DI ++ IE
Sbjct: 286 LMARGMNIR-KSLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIENH 344
Query: 375 INKKMEEFTD 384
+ ++EE +
Sbjct: 345 YSTRIEEMPE 354
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 108 bits (271), Expect = 1e-23
Identities = 95/328 (28%), Positives = 155/328 (46%), Gaps = 46/328 (14%)
Query: 27 PTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAM 86
PT +Q+ IP IL G + TGSGKT+++ P + + + +V+ PTREL
Sbjct: 79 PTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLLESGDKRL--LVIVPTRELVS 136
Query: 87 QIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIG 146
Q+ + F F + +R+ + G SI Q +++ + I+TPGRL + +IG
Sbjct: 137 QVGQVFRKFSEGL-LRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRELL---ELKSIG 192
Query: 147 GLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQT 206
G +++V+DEAD L+ D+ + + P+ F+AT +
Sbjct: 193 GF---EYVVVDEADRLMQHDIRSDVTFILERMKPEVAS---FFSATPF----------EW 236
Query: 207 EGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTS-EKYVKSS------- 258
G + V NV++ + +E ++ V + K L +IL S E ++ +
Sbjct: 237 SGGTRIL------VGNVSVGRDVEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGVDRNG 290
Query: 259 -----CIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIAT 313
I+F N T E L + + L V LHS+ QER ++ + A VLIAT
Sbjct: 291 LEVKKIIVFCNSIRTCENLHKRFRQLLV----LHSRRTMQERKAVIEALEGERA-VLIAT 345
Query: 314 DVASRGLDIPIVELVVNYDIPGNPDTFI 341
D+ RG+DI V+LVVNYD+P D ++
Sbjct: 346 DLGGRGIDIKDVDLVVNYDLPRAVDGYV 373
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 108 bits (271), Expect = 1e-23
Identities = 96/376 (25%), Positives = 160/376 (42%), Gaps = 36/376 (9%)
Query: 10 GCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKW--- 66
G ++E L +K IQ A IP++L G D +G A T +GKT AF P++ K
Sbjct: 387 GLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRM 446
Query: 67 -------SEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+ G ++L PTRELA QI E + +I V + G + E+
Sbjct: 447 DEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEI 506
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
+ +I T GR+ + S L ++FLV DEAD LL + L +I+
Sbjct: 507 RNGCDILIGTCGRIMDFTVKSHIS----LLHLRFLVFDEADRLLQDMKKDPLGHLGAIIK 562
Query: 180 PKN------KRQNLLFTATMTDQVKALSDA--PQTEGKPPVFTFEVESVDNVAIPKTLET 231
RQ ++ +AT V +++ + G+ + + N + K +
Sbjct: 563 DAGFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLA---NGRLSKRVNL 619
Query: 232 TYL----LVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLH 287
+ L ++ K + + + K +K+ IIFV + + L S + +LH
Sbjct: 620 EFFECKGLAEKNAKLREILKQNVNGKTLKT--IIFVQKKDQCDACAAKLTSGGMLAQTLH 677
Query: 288 SQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP-GNP----DTFIX 342
Q R + F++ +L+ TD+ SRG+D+ ++ V+N+D+P G+P DTFI
Sbjct: 678 GDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIH 737
Query: 343 XXXXXXXXXXXXESLC 358
LC
Sbjct: 738 RAGRTGRTGRKENGLC 753
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 108 bits (269), Expect = 2e-23
Identities = 95/391 (24%), Positives = 171/391 (43%), Gaps = 18/391 (4%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSE---DPQGMFGIVLTPTREL 84
T +Q +L D + + TGSGKT+AF PM+ P + ++L+P+REL
Sbjct: 33 TDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSREL 92
Query: 85 AMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL--QKRPHFIIATPGRLAHHVLNSGE 142
QI F +N+ V V GG+ V + I++ K + ++ATPGRL + +
Sbjct: 93 CSQIVSVIQPFAEKLNLTVETVTGGQK-VDKNIKMFKNKNVNILVATPGRLFQIIQHEKT 151
Query: 143 DTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSD 202
++ ++ LV+DEAD F + +S +P +R+ LF+AT QVK D
Sbjct: 152 LIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIP--KQRRTGLFSAT---QVKEEDD 206
Query: 203 APQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIF 262
G +V N A P TL+ Y+ K S + + ++ K I F
Sbjct: 207 L-MVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIR-QRTDKKILIFF 264
Query: 263 VNRTVTAEILRRTLKSLDVR-VTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLD 321
+ + + L R + ++H + R + ++ F V+I+TDV +RG+D
Sbjct: 265 PSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGID 324
Query: 322 IPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEE 381
I ++ V+ +D+P + F+ +L + + + V ++ K++E
Sbjct: 325 ISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQLAYVNFLDNHEKVKLDE 384
Query: 382 F----TDVGDTAVIRKSLTKVTAAKRESLMA 408
+ + +R+ + K+ + R L A
Sbjct: 385 IKVPTNNSRKSEELRQKMIKIQVSDRAILEA 415
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 107 bits (268), Expect = 3e-23
Identities = 99/395 (25%), Positives = 172/395 (43%), Gaps = 71/395 (17%)
Query: 5 EFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILK----------GRDCIGGANTGSGK 54
EF SL S LVE L I + A+Q A +P +L+ G D A TGSGK
Sbjct: 127 EFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGK 186
Query: 55 TIAFAAPMLTKWSEDPQGMFG-IVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIV 113
T+++ P++ S +V+ PTREL +Q+A+ F + S ++V G +S+
Sbjct: 187 TLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLR 246
Query: 114 QQAIEL-----QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFS 168
+ +L + R +++TPGRL H+ N D L+ ++++V+DEAD LL ++F
Sbjct: 247 HETYQLNGDENECRIDVLVSTPGRLVDHIRN---DESFSLQHLRYMVIDEADRLLDQSFQ 303
Query: 169 KDLATCV-------------------------------SILPPK--NKRQNLLFTATMTD 195
+ T + ++LP + + Q L+F+AT+T
Sbjct: 304 DWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTR 363
Query: 196 QVKALSDAPQTEGKPPVFTFEVESVDN----------VAIPKTLETTYLLVPEHVKESYL 245
++ + + + VD+ ++P TL+ ++ V K L
Sbjct: 364 DPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILL 422
Query: 246 YQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTS------LHSQMPQQERTNSV 299
Y ++ S+ C FV A L R L+ + + S + + ER +
Sbjct: 423 YHLIHSKNLTNILC--FVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKII 480
Query: 300 QRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP 334
RF +L+ +D+ +RG+D+ + V+NYD P
Sbjct: 481 SRFATGDLNLLVCSDLMARGIDVANTQNVINYDPP 515
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 107 bits (267), Expect = 3e-23
Identities = 108/407 (26%), Positives = 184/407 (44%), Gaps = 35/407 (8%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFA 59
S F+ L L++ + AM +P+ IQ+ +P +L ++ I + +G+GKT AF
Sbjct: 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 60 APMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQ-QAI 117
ML++ + + L+PT ELA+Q + G +++A V G + + Q I
Sbjct: 150 LAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSI 177
Q +I TPG + + K++K VLDEAD+++ +D + +
Sbjct: 210 SEQ----IVIGTPGTVLDWC---SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQR 262
Query: 178 LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP 237
+ P+N Q LLF+AT D V + + E E++D T++ Y+L
Sbjct: 263 MLPRNC-QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD------TIKQYYVLCS 315
Query: 238 EHVKESY----LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQ 293
++ LY +T + +IF + TA L L +V L +M +
Sbjct: 316 SRDEKFQALCNLYGAITI-----AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVE 370
Query: 294 ERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP----GNPD--TFIXXXXXX 347
+R ++RFR +VL+ T+V +RG+D+ V +V+N+D+P GNPD T++
Sbjct: 371 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 430
Query: 348 XXXXXXXESLCFVTEKDIQRV-EAIEERINKKMEEFTDVGDTAVIRK 393
++ V K + I+E NKK+E D D I K
Sbjct: 431 GRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL-DTDDLDEIEK 476
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 107 bits (267), Expect = 3e-23
Identities = 100/352 (28%), Positives = 166/352 (46%), Gaps = 33/352 (9%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
++F+SL S+ ++E L A +P+ +Q IP G D I A +G+GKT F+ L
Sbjct: 62 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL 121
Query: 64 TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMN-IRVAIVVGGESIVQQAIELQKR 122
+ ++L PTRE+A+QI TA G M + + +GG + Q L K+
Sbjct: 122 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KK 180
Query: 123 PHFIIATPGRLAHHV----LNSGEDTIGGLKRVKFLVLDEADILLTE-TFSKDLATCVSI 177
H + +PGR+ + LN G ++ +LDEAD LL E +F + + S
Sbjct: 181 CHIAVGSPGRIKQLIELDYLNPGS--------IRLFILDEADKLLEEGSFQEQINWIYSS 232
Query: 178 LPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVP 237
LP +Q L +AT + L++A + P F + S D I L+ Y +V
Sbjct: 233 LPAS--KQMLAVSATYPE---FLANALTKYMRDPTFV-RLNSSDPSLIG--LKQYYKVVN 284
Query: 238 EHV--------KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQ 289
+ K +L ++ + + + ++F N A+ L L S +
Sbjct: 285 SYPLAHKVFEEKTQHLQELFSRIPF--NQALVFSNLHSRAQHLADILSSKGFPAECISGN 342
Query: 290 MPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
M Q +R +++ + + RVLI+TD+ SRG+D V LVVN D+P + +T++
Sbjct: 343 MNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYM 394
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 107 bits (266), Expect = 5e-23
Identities = 103/349 (29%), Positives = 153/349 (43%), Gaps = 22/349 (6%)
Query: 2 SNSEFKSLGCSKWLVEALNA-MKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAF 58
S S F+ L S L++ L MK +P+ IQ +P I+ + I A+ GSGKT F
Sbjct: 89 SASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCF 148
Query: 59 AAPMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIE 118
ML++ + + + PTRELA Q E G I + V + A
Sbjct: 149 VLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAAT 208
Query: 119 --LQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEAD-ILLTETFSKDLATCV 175
H +I TPG L + GL +K LV DEAD +L T+ F D +
Sbjct: 209 RGAPVSAHVVIGTPGTLKKWMAFKRL----GLNHLKILVFDEADHMLATDGFRDDSLKIM 264
Query: 176 SILPPKNKR-QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYL 234
+ N Q LLF+AT + VK + E ++D+V K +
Sbjct: 265 KDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYK------V 318
Query: 235 LVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQE 294
+ P+ + + + E IIFV +A+ + + L + VTS+H + + +
Sbjct: 319 VCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESD 378
Query: 295 RTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP-----GNPD 338
R V+ F+ +VLIATDV +RG D V LVVNY++P G PD
Sbjct: 379 RDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPD 427
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 106 bits (265), Expect = 6e-23
Identities = 94/386 (24%), Positives = 171/386 (43%), Gaps = 36/386 (9%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ L + L+ L V PT IQ A IP L D I + +G+GKT+ + ++
Sbjct: 27 FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQS 86
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAF-GSAMNIRVAIVVGGESIVQQAIELQKRPH 124
++ + +++ PTRELA+Q+ + F S + + + +GG + + + +
Sbjct: 87 FNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNE-SR 145
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILL-TETFSKDLATCVSILPPKNK 183
II TPGRL H E+ + + +++ LVLDEAD L T++ ++ + +P
Sbjct: 146 VIIGTPGRLLHLY----ENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMP--KN 199
Query: 184 RQNLLFTAT----MTDQVKALSDAPQTEGKPP---------VFTFEVESVDNVAIPKTLE 230
RQ + +AT + +++ + D P F +E+ +N L
Sbjct: 200 RQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRL- 258
Query: 231 TTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQM 290
K L QI Y IIF + + A+ + L + + + M
Sbjct: 259 ----------KLQILGQIFNQLPY--EQAIIFASSQMRADSYKNYLTASGIDCHLISGAM 306
Query: 291 PQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXX 350
Q ER + + +R R+L+ATD+ +RG+D P LV+N D P + T++
Sbjct: 307 EQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRF 366
Query: 351 XXXXESLCFV-TEKDIQRVEAIEERI 375
++ F+ ++K+ QR + ++I
Sbjct: 367 GSKGIAITFIASKKESQRFREMSKKI 392
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 105 bits (262), Expect = 1e-22
Identities = 90/350 (25%), Positives = 161/350 (45%), Gaps = 38/350 (10%)
Query: 25 VQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMF-GIVLTPTRE 83
V P+ + P L+ RD A TGSGKTI + P+L P + ++L P +
Sbjct: 243 VLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQT 302
Query: 84 LAMQIAEQFTAFGSAMNI-RVAIVVGGESIVQQAIELQKRP-HFIIATPGRLAHHVLNSG 141
L QI ++F + + +V + G ++A +L P + I+ATP RL H+ +
Sbjct: 303 LVAQIVDEFKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKI 362
Query: 142 EDTIGGLKRVKFLVLDEADI---LLTETF----------SKDLATCVSILPPKNKRQNLL 188
I L +++FL++DEAD L+ E + + +A I+ + Q ++
Sbjct: 363 PPPID-LSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIV 421
Query: 189 FTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNV--------------AIPKTLETTYL 234
+AT++ V+ L KP +F+ SV ++ A+P ++ +
Sbjct: 422 LSATLSKDVEELH--LWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLV 479
Query: 235 LVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL---DVRVTSLHSQMP 291
+ +YQ +T K+ ++ +IFVN ++ L LK L V +Q+
Sbjct: 480 VTDPKFHPLAVYQQITRNKFNRT--LIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLF 537
Query: 292 QQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ R +++F RVLI +DV +RG D+ V+ V+NY++P + F+
Sbjct: 538 GKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFV 587
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 105 bits (262), Expect = 1e-22
Identities = 92/346 (26%), Positives = 155/346 (44%), Gaps = 30/346 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ LG S+ ++ AL + I PT IQ IP +++ + + G++TGSGKT+A+ P++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQV 173
Query: 66 WSE-------------DPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESI 112
SE P+ +VL PTREL+ Q+ + R +V GG I
Sbjct: 174 LSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCLHQDYHHA--RFRSILVSGGSRI 231
Query: 113 VQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLA 172
Q L ++ TPGR+ H+ G G + +LVLDEAD + F ++
Sbjct: 232 RPQEDSLNNAIDMVVGTPGRILQHI-EEGNMVYGD---IAYLVLDEADTMFDRGFGPEIR 287
Query: 173 TCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETT 232
L P N+ ++ V+ L D + +G + T S + I
Sbjct: 288 ---KFLAPLNQHIKVVNEIVSFQAVQKLVD-EEFQGIEHLRT----STLHKKIANARHDF 339
Query: 233 YLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQ 292
L K L Q+L S ++F N ++ + L + + H ++P
Sbjct: 340 IKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPA 399
Query: 293 QERTNSVQRFRAQA--ARVLIATDVASRGLDIPIVELVVNYDIPGN 336
++R ++++F+ + L+ TD+A+RGLD+ V+ VV +D P N
Sbjct: 400 EQRVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKN 444
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 104 bits (259), Expect = 3e-22
Identities = 105/411 (25%), Positives = 178/411 (42%), Gaps = 21/411 (5%)
Query: 27 PTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKW-SEDPQGMFGIVLTPTRELA 85
PT IQ +P +L+ R + A TGSGKT+AF P++ + G+ +VL PTRELA
Sbjct: 142 PTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTRELA 201
Query: 86 MQIAEQFTAFGSAMNIRVAIVVG-GESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDT 144
QI + +R + E+ + E ++R +++TP R+ L E
Sbjct: 202 QQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRV--RFLLQQEPP 259
Query: 145 IGGLKRVKFLVLDEADILLTE---TFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALS 201
+ L V++ VLDEAD L+ E F + L + K F+AT T V
Sbjct: 260 LLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKCV-AFFSATYT--VPVAK 316
Query: 202 DAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCII 261
A + T V++ + +T++ L V + + L + ++ ++
Sbjct: 317 WALRHLKNLVRITIGVQN----SATETVQQELLFVGSEGGKLVAIRDLVRQG-LQPPVLV 371
Query: 262 FVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLD 321
FV A+ L L + V +H++ Q +R N V+ FR + VLI T++ RG+D
Sbjct: 372 FVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMGRGID 431
Query: 322 IPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEE 381
V LV+NYD P ++I ++ F T++D + I I
Sbjct: 432 FKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIKNSGGT 491
Query: 382 FTD-VGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQKRKNESKEKT 431
+ + +RKS K+ A K +D+E + + + + +E + T
Sbjct: 492 VPEYMLQMKKVRKSEAKMRAKK-----PLDREDISTKIRPETKGDEKHKST 537
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 103 bits (258), Expect = 4e-22
Identities = 88/330 (26%), Positives = 156/330 (46%), Gaps = 64/330 (19%)
Query: 16 VEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFG 75
++A+ M + T IQ I +L+GRD + A TGS + M T + G+F
Sbjct: 381 LKAIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGSVELTVKLKFMPT----NRPGVF- 435
Query: 76 IVLTPTRELAMQIAEQFTAFGSAMNIRV---AIVVGGESIVQQAIELQKRPHFIIATPGR 132
+L+PTRELAMQI FG A + +++GG++ +A +L + I+ATPG
Sbjct: 436 -ILSPTRELAMQI------FGGANTHHMHTYGLIMGGDNTSAEAQKLANGINIIVATPG- 487
Query: 133 LAHHVLNSGEDTIGGL-KRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFTA 191
H+L+ ++T G + K +++LV+DEAD +L F ++L + +LP R +L +A
Sbjct: 488 ---HLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLP--TCRHTMLLSA 542
Query: 192 TMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTS 251
T T +V+ L+ +G +
Sbjct: 543 TQTRKVEDLARISLKKG------------------------------------------A 560
Query: 252 EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLI 311
K K ++F + +++ + L +D+ + ++H + Q + T + +F + +L+
Sbjct: 561 IKNRKRKIMVFFSSSMSVKYHYELLNYMDLPILAIHGKQKQNKGTTTFFQFCKADSGILL 620
Query: 312 ATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
DVA+RGLDIP V+ +V +D +P +I
Sbjct: 621 CMDVAARGLDIPEVDWIVQHDPLDDPKEYI 650
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 103 bits (258), Expect = 4e-22
Identities = 93/349 (26%), Positives = 161/349 (45%), Gaps = 38/349 (10%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFA 59
S S F+ L +++AL+ M PT IQ+ +P +L + I A +G+GKT AF
Sbjct: 207 SISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFV 266
Query: 60 APMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVV-GGESIVQQAI 117
ML + + I L PT ELA QI E G + N+++ + GG +
Sbjct: 267 LTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 326
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCV-- 175
+L ++ +I TPG ++ +++ LVLDEAD+++ D++T +
Sbjct: 327 KLTEQ--IVIGTPGITRDYLQKY---KCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYN 381
Query: 176 SILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLL 235
+ + Q++LF+AT + PV F + + N AI L+
Sbjct: 382 MVEDASDSVQSMLFSATYDE---------------PVINFATKIIKN-AIVVMLKREEQA 425
Query: 236 VPEHVKESYLYQILTSEKYVK----------SSCIIFVNRTVTAEILRRTLKSLDVRVTS 285
+P ++K+ Y+ KY +S +IF + + L +++ +V
Sbjct: 426 LP-NIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDV 484
Query: 286 LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP 334
LH M ER +++ F+ +VLI T+V +RG+D+ V +V+NYD+P
Sbjct: 485 LHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 533
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 103 bits (258), Expect = 4e-22
Identities = 93/349 (26%), Positives = 161/349 (45%), Gaps = 38/349 (10%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFA 59
S S F+ L +++AL+ M PT IQ+ +P +L + I A +G+GKT AF
Sbjct: 232 SISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFV 291
Query: 60 APMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVV-GGESIVQQAI 117
ML + + I L PT ELA QI E G + N+++ + GG +
Sbjct: 292 LTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 351
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCV-- 175
+L ++ +I TPG ++ +++ LVLDEAD+++ D++T +
Sbjct: 352 KLTEQ--IVIGTPGITRDYLQKY---KCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYN 406
Query: 176 SILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLL 235
+ + Q++LF+AT + PV F + + N AI L+
Sbjct: 407 MVEDASDSVQSMLFSATYDE---------------PVINFATKIIKN-AIVVMLKREEQA 450
Query: 236 VPEHVKESYLYQILTSEKYVK----------SSCIIFVNRTVTAEILRRTLKSLDVRVTS 285
+P ++K+ Y+ KY +S +IF + + L +++ +V
Sbjct: 451 LP-NIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDV 509
Query: 286 LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP 334
LH M ER +++ F+ +VLI T+V +RG+D+ V +V+NYD+P
Sbjct: 510 LHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 558
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 103 bits (258), Expect = 4e-22
Identities = 93/349 (26%), Positives = 161/349 (45%), Gaps = 38/349 (10%)
Query: 2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFA 59
S S F+ L +++AL+ M PT IQ+ +P +L + I A +G+GKT AF
Sbjct: 616 SISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFV 675
Query: 60 APMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVV-GGESIVQQAI 117
ML + + I L PT ELA QI E G + N+++ + GG +
Sbjct: 676 LTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR 735
Query: 118 ELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCV-- 175
+L ++ +I TPG ++ +++ LVLDEAD+++ D++T +
Sbjct: 736 KLTEQ--IVIGTPGITRDYLQKY---KCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYN 790
Query: 176 SILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLL 235
+ + Q++LF+AT + PV F + + N AI L+
Sbjct: 791 MVEDASDSVQSMLFSATYDE---------------PVINFATKIIKN-AIVVMLKREEQA 834
Query: 236 VPEHVKESYLYQILTSEKYVK----------SSCIIFVNRTVTAEILRRTLKSLDVRVTS 285
+P ++K+ Y+ KY +S +IF + + L +++ +V
Sbjct: 835 LP-NIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDV 893
Query: 286 LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIP 334
LH M ER +++ F+ +VLI T+V +RG+D+ V +V+NYD+P
Sbjct: 894 LHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 942
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 101 bits (251), Expect = 2e-21
Identities = 116/483 (24%), Positives = 194/483 (40%), Gaps = 76/483 (15%)
Query: 13 KWLVEALNAMKIVQPTAIQKACIPEILKG---------RDCIGGANTGSGKTIAFAAPML 63
K+ +AL MKI + +QK IP IL+ RD A TGSGKT+AFA P++
Sbjct: 146 KYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIV 205
Query: 64 TKWSEDPQ-GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGG---ESIVQQAIEL 119
S+ + +V+ P ELA+Q+ + S + V ++ E ++ +E
Sbjct: 206 QLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQ 265
Query: 120 QKRPHF-----IIATPGRLAHHVLNSGEDTIG-GLKRVKFLVLDEADILLTETFSKDL-- 171
K ++ ++ TPGRL H+ T G LK +KFLV+DEAD ++ F L
Sbjct: 266 YKGKYYSKADIVVTTPGRLVDHL----HATKGFCLKSLKFLVIDEADRIMDAVFQNWLYH 321
Query: 172 ------------------ATCVSILPPKNKRQ--NLLFTATMTDQ--------------- 196
C + L +Q LLF+AT++
Sbjct: 322 LDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLF 381
Query: 197 -----VKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTS 251
+ L DA + T + V P L Y + +K ++ ++
Sbjct: 382 ATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALV-- 439
Query: 252 EKYVKSSCIIFVNRTVTAEILRRTLKSL----DVRVTSLHSQMPQQERTNSVQRFRAQAA 307
EKY + F N + A L LK L +V+ L + + R ++ F A
Sbjct: 440 EKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKI 499
Query: 308 RVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQR 367
LI +D +RG+D+ V++V++Y+ P + T+I ++ +TE+D+
Sbjct: 500 NGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTL 559
Query: 368 VEAIEERINKKMEEFTDVGDTAVIRKSLTKVTAAKRESLMAMDKEGFGERRKLQKRKNES 427
+ I NK + E V I+ ++ +E+L + E + + KN
Sbjct: 560 FKKILSDANKGLGEEIHVSPDIEIQHAV-----EYKEALAGLRSEKVKNKNQKMAEKNRV 614
Query: 428 KEK 430
K
Sbjct: 615 ATK 617
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 98.6 bits (244), Expect = 2e-20
Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 39/318 (12%)
Query: 12 SKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML------TK 65
S+ ++EAL+ T +Q IP + +D + A TGSGKT+AF P +
Sbjct: 25 SEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNS 84
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF 125
+ P + G++++PTREL+ QI + A +R+ E ++ +
Sbjct: 85 YPPKPHQVMGVIISPTRELSAQIHKVARA------VRLDFAKCREVEADMNTLEEEGANL 138
Query: 126 IIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQ 185
+I TPGRL+ + + ++ L+LDEAD LL F K + +S LP +R+
Sbjct: 139 LIGTPGRLSDMMKRM---EFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLP--KQRR 193
Query: 186 NLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYL 245
LF+AT T +A++D + + P E + K+ + +LL+ K+ +
Sbjct: 194 TGLFSATQT---QAVADLAKAGLRNPYLKCEADQ-------KSSQLVHLLIENKNKKLVV 243
Query: 246 YQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQ 305
+ ++ +C+ + ++ +LKS+ T H +M Q+ R ++ F
Sbjct: 244 F-------FMTCACVDYWGLVISKI---PSLKSISFFPT--HGKMDQKGRDTALASFTEA 291
Query: 306 AARVLIATDVASRGLDIP 323
++ VL+ TDVA+RGLDIP
Sbjct: 292 SSGVLLCTDVAARGLDIP 309
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 98.2 bits (243), Expect = 2e-20
Identities = 99/388 (25%), Positives = 170/388 (43%), Gaps = 53/388 (13%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRD-CIGGANTGSGKTIAFAAPM 62
SE SL S +L+ + T +Q+ + E+ + + A TG+GKT+AF +
Sbjct: 40 SEVASL--SSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAF---L 94
Query: 63 LTKWSEDPQG--------MFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQ 114
L + + +G + ++L+PTRELA+QI E+ IRV+ +GG S ++
Sbjct: 95 LVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMR 154
Query: 115 QAIELQK-RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLAT 173
+ +++ + +IATPGRL H+ N + L F +LDEAD L+ F++ +
Sbjct: 155 EENAIRRGNANLLIATPGRLEDHLQNPR--ILESLSTDSF-ILDEADRLMDMGFAESILN 211
Query: 174 CVSILPPKNKRQNLLFTATMTDQVKAL----------------SDAPQTEGKPPVFTFEV 217
+ K + L F+ATM +V + + P T + P F E
Sbjct: 212 IHEAVTT-TKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIET 270
Query: 218 ESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLK 277
+ + K ++ L+ Q LTS S I+F+ + + L+
Sbjct: 271 K------LDKVFSSSLSLL----------QQLTSSN-PSSRIIVFLPTISMVDFVGGVLE 313
Query: 278 S-LDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGN 336
+ L + LHS + +R + + FR + +L ATDV +RG+D P + VV P N
Sbjct: 314 NHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSN 373
Query: 337 PDTFIXXXXXXXXXXXXXESLCFVTEKD 364
D +I E+ + E++
Sbjct: 374 TDDYIHRIGRTGRAGKTGEAYLILLEQE 401
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 95.1 bits (235), Expect = 2e-19
Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 43/338 (12%)
Query: 28 TAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDP-------QGMFGIVLTP 80
T IQK +P + C+ A TG GKTI + P++ K + ++LTP
Sbjct: 133 TGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTP 192
Query: 81 TRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHF-----IIATPGRLAH 135
RELA QIA N++V ++GG + +L P F ++AT G L+
Sbjct: 193 GRELATQIAGVTEKLTQGTNLKVQSLLGGNTK-----QLMMNPQFEEVDILVATLGALSK 247
Query: 136 HVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP------PKNKRQNLLF 189
V I +++V+ LVLDEAD LL +TF+ L+ + P Q +L
Sbjct: 248 LVTTG----IYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILA 303
Query: 190 TATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKT------LETTYLLVPEHVKES 243
+ATM + + +V+++ V P + +L + + + +
Sbjct: 304 SATMPTNTREILHK----------VIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPA 353
Query: 244 YLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFR 303
L ++ + + I+F N++ T++ + L + V +L+ M + R ++F+
Sbjct: 354 TLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQ 413
Query: 304 AQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
VL TDV SRGLD VVN+D P + +I
Sbjct: 414 NGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYI 451
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 93.2 bits (230), Expect = 7e-19
Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 23/315 (7%)
Query: 26 QPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRE 83
+P+ IQ+ +P +L ++ I + +G+GKT AF ML++ + + L PT E
Sbjct: 5 RPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYE 64
Query: 84 LAMQ---IAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNS 140
LA+Q + EQ F ++++V + G I + ++ K+ II TPG +
Sbjct: 65 LALQTGRVVEQMGKF--CVDVQVMYAIRGNRI-PRGTDITKQ--IIIGTPGTVLDWCFKL 119
Query: 141 GEDTIGGLKRVKFLVLDEADILL-TETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKA 199
+ L +++ VLDEAD+++ T+ FS LP ++ Q LLF+AT D V
Sbjct: 120 ---KLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP--SECQMLLFSATFEDSVWH 174
Query: 200 LSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSC 259
++ + E +++N+ Y ++ EH K+ Y
Sbjct: 175 FAERIIPDPNVIKLRKEELTLNNIR-------QYYVLCEHRKDKYQALCNIYGSITIGQA 227
Query: 260 IIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRG 319
IIF A+ L + +V+ L ++ ++R + +QRFR +VLI T+V +RG
Sbjct: 228 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 287
Query: 320 LDIPIVELVVNYDIP 334
+D+ V +VVN+D+P
Sbjct: 288 IDVKQVTIVVNFDLP 302
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 92.4 bits (228), Expect = 1e-18
Identities = 85/316 (26%), Positives = 148/316 (45%), Gaps = 40/316 (12%)
Query: 15 LVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSED----- 69
L + L MK+ +PT IQ+A I+ G D + A+TGSGKT+AF P + K E+
Sbjct: 710 LHDNLKRMKMNRPTPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDR 769
Query: 70 ------PQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ--K 121
P +++ PTREL Q ++ + GG S L+
Sbjct: 770 DVTDEKPSPRL-LIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFS 828
Query: 122 RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTE-TFSKDLATCVSILPP 180
+ + ++AT GRL V N+GE + L ++K++VLDEAD ++ F ++++ + P
Sbjct: 829 QLNILVATMGRLQDFV-NAGEVS---LSKMKYIVLDEADRMVDSIDFGEEVSKIIG-SPG 883
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQ--TEGKPPVFTFEVESVDNVAIP-KTLETTYLLVP 237
+ +Q +LF+A+ ++ +++ D P+ EG + + VD + ++ L VP
Sbjct: 884 ERTQQTVLFSASFSEDLQS-DDLPKFVKEG------YTMLQVDKFGTANEKIDQKILPVP 936
Query: 238 EHVKESYLYQILTSEKYV----------KSSCIIFVNRTVTAEILRRTLKSLDVRVTSLH 287
K +Y++L ++ K +IFVN + L + S V S+H
Sbjct: 937 RTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMH 996
Query: 288 SQMPQQERTNSVQRFR 303
S Q++R ++ FR
Sbjct: 997 SYQNQEQRDRTLDDFR 1012
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 92.0 bits (227), Expect = 2e-18
Identities = 86/315 (27%), Positives = 150/315 (47%), Gaps = 23/315 (7%)
Query: 26 QPTAIQKACIPEILKG--RDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRE 83
+P+ IQ+ +P +L ++ I + +G+GKT AF ML++ + + L PT E
Sbjct: 5 RPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYE 64
Query: 84 LAMQ---IAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNS 140
LA+Q + EQ F ++++V + G I + ++ K+ II TPG +
Sbjct: 65 LALQTGRVVEQMGKF--CVDVQVMYAIRGNRI-PRGTDITKQ--IIIGTPGTVLDWCFKL 119
Query: 141 GEDTIGGLKRVKFLVLDEADILL-TETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKA 199
+ L +++ VLDEAD+++ T+ FS LP ++ Q LLF+AT D V
Sbjct: 120 ---KLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP--SECQMLLFSATFEDSVWH 174
Query: 200 LSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSC 259
++ + E +++N+ Y ++ EH K+ Y
Sbjct: 175 FAERIIPDPNVIKLRKEELTLNNIR-------QYYVLCEHRKDKYQALCNIYGSITIGQA 227
Query: 260 IIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRG 319
IIF A+ L + +V+ L ++ ++R + QRFR +VLI T+V +RG
Sbjct: 228 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARG 287
Query: 320 LDIPIVELVVNYDIP 334
+D+ V +VVN+D+P
Sbjct: 288 IDVKQVTIVVNFDLP 302
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 91.7 bits (226), Expect = 2e-18
Identities = 88/300 (29%), Positives = 135/300 (44%), Gaps = 21/300 (7%)
Query: 18 ALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML-------TKWSEDP 70
AL + T +Q A IP ++ +D A TGSGKT+AF P+L K +
Sbjct: 23 ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQ 82
Query: 71 QGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIEL-QKRPHFIIA 128
G I++TPTRELA+QI E + F + +GG + + Q+ + I+A
Sbjct: 83 VG--AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVA 140
Query: 129 TPGRLAHHVLNSGE--DTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQN 186
TPGRL E D ++ + LVLDEAD LL F + T + LP +R+
Sbjct: 141 TPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLP--KQRRT 198
Query: 187 LLFTATMTDQVKALSDAP-QTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYL 245
LF+AT T +V+ L A + + V V + P LE Y++ K + L
Sbjct: 199 GLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQL 258
Query: 246 YQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL--DVRVTSLHSQMPQQERTNSVQRFR 303
L + K K ++F + E + L+ L V++ +H +M + +R FR
Sbjct: 259 VHFLRNHKQEKH--LVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFMEFR 315
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 89.0 bits (219), Expect = 1e-17
Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 61/333 (18%)
Query: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
+ FK++G L L + PT IQ+ IP IL+ R +G TGSGKT+ +
Sbjct: 7 IKGGSFKTMGLDYRL---LRNILYEGPTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLI 63
Query: 61 PMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ 120
P + + G +V+ PT+EL +Q A + + G +++A +L
Sbjct: 64 PAIQRAIS---GEKTLVIVPTKELVIQ----------ARRVLKRLARG----IEEAWKLI 106
Query: 121 KRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPP 180
+ I TPG+ I G+ LV+DE D +L E K + ++
Sbjct: 107 E-----ICTPGK------------IEGMS-ADMLVVDEIDRILEEPSLKSVFDRIN---E 145
Query: 181 KNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHV 240
Q + F+AT+ D + E+E+ I +T++ + +P
Sbjct: 146 SLSCQKVFFSATLPDHPLNMK------------VVEIET----RINETVKHFFFYIPSES 189
Query: 241 KESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQ 300
KE+ L +IL + I+F E+L L + ++S M + R + +
Sbjct: 190 KEAALLRILDKTR----KTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFR 245
Query: 301 RFRAQAARVLIATDVASRGLDIPIVELVVNYDI 333
F +L+ TDVA+RGLDIP ++ VVNYD+
Sbjct: 246 DFNTSKFSILVVTDVAARGLDIPYLDTVVNYDL 278
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 87.0 bits (214), Expect = 5e-17
Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 42/333 (12%)
Query: 43 DCIGGANTGSGKTIAFAAPML-TKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNI 101
D + A TGSGKT+A++ P++ T + + I++ PT+ L Q+ T ++
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSL 288
Query: 102 RVAIVVGGESIVQQAIELQK-RPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEAD 160
V+I S+ + +L P +I TPGRL H+ + LK +KFL++DEAD
Sbjct: 289 IVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSIN----LKNLKFLIIDEAD 344
Query: 161 ILLTETFSKDLATCVSILP-------PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVF 213
LL ++F +S L P N + ++F+AT+T + L+ KP +F
Sbjct: 345 RLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIK-MIFSATLTTNTEKLNGLNLY--KPKLF 401
Query: 214 TFEVESVD---------NVAIPKTLETTY-----------LLVPEHVKESYLYQILTSEK 253
+ + + N+ IP T ++ Y + + L + ++E
Sbjct: 402 LKQTDKLYQLPNKLNEFNINIP-TAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNES 460
Query: 254 YVKSSCII-FVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRF----RAQAAR 308
++ S ++ + + + + + L++L V + S++S + E V F +
Sbjct: 461 SIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGIT 520
Query: 309 VLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+LI TD+ SRG+DI + V+NYD P + ++
Sbjct: 521 ILITTDIMSRGIDINDITQVINYDPPMSSQQYV 553
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 85.9 bits (211), Expect = 1e-16
Identities = 66/240 (27%), Positives = 108/240 (44%), Gaps = 8/240 (3%)
Query: 147 GLKRVKFLVLDEADILLTETFSKDLATCVSI--LPPKNKRQNLLFTATMTDQVKALSDAP 204
G++ ++LVLDEAD +L F + V +P K +R +F+AT +++ L+
Sbjct: 7 GMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDF 66
Query: 205 QTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVN 264
E + V S + K + V E K SYL +L + S ++FV
Sbjct: 67 LKENYVFLAVGRVGSTSENIMQKIV-----WVEEDEKRSYLMDLLDATGD-SSLTLVFVE 120
Query: 265 RTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPI 324
A L L + V ++H + Q ER + FR A +L+AT VA+RGLDIP
Sbjct: 121 TKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPN 180
Query: 325 VELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRVEAIEERINKKMEEFTD 384
V+ V+NYD+P + D ++ + F +K+ + + I + +E D
Sbjct: 181 VKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELPD 240
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 85.5 bits (210), Expect = 1e-16
Identities = 59/199 (29%), Positives = 102/199 (50%), Gaps = 9/199 (4%)
Query: 3 NSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPM 62
+S F+ L+ A+ P+ +Q CIP+ + G D + A +G GKT F
Sbjct: 43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102
Query: 63 LTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQK 121
L + + +V+ TRELA QI++++ F M +++V++ GG SI + L+K
Sbjct: 103 LQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK 162
Query: 122 R-PHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTE-TFSKDLATCVSILP 179
PH ++ TPGR+ V N LK VK VLDE D +L + +D+ + P
Sbjct: 163 NCPHVVVGTPGRILALVRNRS----FSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 180 PKNKRQNLLFTATMTDQVK 198
+++Q ++F+AT++ ++
Sbjct: 219 --HEKQCMMFSATLSKDIR 235
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 85.5 bits (210), Expect = 1e-16
Identities = 81/317 (25%), Positives = 132/317 (41%), Gaps = 52/317 (16%)
Query: 70 PQGMFGIVLTPTRELAMQIAEQFTAFG---SAMNIRVAIVVGGESIVQQAIELQKRPHFI 126
P I++ P+RELA Q Q F S +R +++GG + +Q +L + H +
Sbjct: 284 PNAPQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIV 343
Query: 127 IATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSK----------------- 169
+ TPGRL ++NSG + L +F VLDEAD LL + +++
Sbjct: 344 VGTPGRL-EEMINSG---LVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGR 399
Query: 170 --DLATCVSIL---PPKNKRQNLLFTATMTDQVKALSDAPQT-----------------E 207
+ C + L K + L+ T D +K P+T
Sbjct: 400 RLQMVVCSATLHAFEVKKMAERLMHFPTWVD-LKGEDAVPETVHHVVCLVDPQMDTTWQS 458
Query: 208 GKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTV 267
+ P+ T V DNV + T + +K Y + +K+ IIF
Sbjct: 459 LRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAI--DKHNMDRAIIFCRTKQ 516
Query: 268 TAEILRRTLKSLDVRVTS---LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPI 324
+ L R L+ + S LH QER +++ F+ Q + LI TDVA+RGLDI
Sbjct: 517 DCDNLERFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITG 576
Query: 325 VELVVNYDIPGNPDTFI 341
+ ++N +P + ++
Sbjct: 577 LPFMINVTLPDDKTNYV 593
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 82.4 bits (202), Expect = 1e-15
Identities = 69/259 (26%), Positives = 115/259 (43%), Gaps = 27/259 (10%)
Query: 106 VVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTE 165
V+GG S L +IATPG H+++ E+ L ++VLDEAD ++
Sbjct: 366 VIGGISREDWGFRLLMGCEIVIATPG----HLIDVLENRYLVLSCCTYVVLDEADRMIDV 421
Query: 166 TFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAI 225
F D+ + +P R + D K L++ + KP E V+ V
Sbjct: 422 GFEPDVQKILEHMPQSEARHD-----ESEDPEKMLANFESGKRKPH------ERVEQV-- 468
Query: 226 PKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTS 285
L+ E K L +IL ++ + IFVN+ ++L ++L+ + +
Sbjct: 469 --------FLMSESEKRKKLLEIL--KQGFDPAITIFVNQKKGCDVLAKSLEKMGYNACT 518
Query: 286 LHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXX 345
LH Q++R ++ + A VL+ TDVA G+DI V +VVNYD+ N D +I
Sbjct: 519 LHGGKGQEQREFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIG 578
Query: 346 XXXXXXXXXESLCFVTEKD 364
++ F+T++D
Sbjct: 579 RMGQAGKSGVAITFLTKED 597
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 74.7 bits (182), Expect = 2e-13
Identities = 78/323 (24%), Positives = 135/323 (41%), Gaps = 57/323 (17%)
Query: 70 PQGMFGIVLTPTRELAMQIA---EQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFI 126
P +++ P+RELA Q +QF + +R +++GG + Q L+ +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV 343
Query: 127 IATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP----PKN 182
+ TPGRL ++++G+ L +V+FLVLDEAD LL++ +S + + +P
Sbjct: 344 VGTPGRL-DDLVSTGKLN---LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK 399
Query: 183 KRQNLLFTATM-TDQVKALSDA----------------------------PQTE------ 207
+ Q ++ +AT+ + VK LS+ P+T+
Sbjct: 400 RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERL 459
Query: 208 GKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTV 267
GK + T +V + DN + + +K Y + + K IIF +
Sbjct: 460 GKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHK--MDQAIIFCRTKI 517
Query: 268 TAEILRRTL---------KSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASR 318
+ L + K LH ER +++RF+ R LI TDVA+R
Sbjct: 518 DCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAAR 577
Query: 319 GLDIPIVELVVNYDIPGNPDTFI 341
G+DI V V+N +P ++
Sbjct: 578 GIDIHGVPYVINVTLPDEKQNYV 600
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 73.6 bits (179), Expect = 6e-13
Identities = 91/373 (24%), Positives = 154/373 (40%), Gaps = 42/373 (11%)
Query: 27 PTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAM 86
P QK IP LK + I A TGSGKT+++ P++ + +FG +L P + L
Sbjct: 48 PLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEM--ARGRSLFGAILVPGKPLVR 105
Query: 87 QIAEQFTAFGSAMNIRVAIVVG----------GES--IVQQAIELQKRPHFIIATPGRLA 134
Q+ ++V V G GE +VQ+AI+ + R IA R +
Sbjct: 106 QVYRVVREIKHE-GLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRER--IAESLRAS 162
Query: 135 HHVLNSGEDTIGGL------KRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLL 188
VL ++ GL + V LV+DEAD+L+ A+ +S++ ++ +
Sbjct: 163 ARVLIGTPRSVLGLMSMSEIRNVTHLVIDEADLLINPETVGVFASILSVIEMEDIHISC- 221
Query: 189 FTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQI 248
F+ATM + V + + ++ K V + + +D+ + T +K L QI
Sbjct: 222 FSATMNEYVSEVIETVKSITKIRVVSKRL--IDHEFVFGT--------SRKIKHLSLLQI 271
Query: 249 LTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAAR 308
+ ++S +IFV T E L L V + Q+ + FR +
Sbjct: 272 IADG--IESPTLIFVKDEKTGEALSMLLGKSAVY------REDQEGSGEVLDGFRLKKIW 323
Query: 309 VLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLCFVTEKDIQRV 368
L TD SRG+D + V+NYD+P F+ + + +D R+
Sbjct: 324 YLFTTDSLSRGIDFYNIRSVINYDLPSTKTQFVHRIGRINRNCQGQKIYTIYSSEDFGRI 383
Query: 369 EAIEERINKKMEE 381
+ E + + E
Sbjct: 384 GVVAEFLEENGHE 396
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 73.2 bits (178), Expect = 7e-13
Identities = 74/308 (24%), Positives = 138/308 (44%), Gaps = 35/308 (11%)
Query: 51 GSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAMQIAE--QFTAFGSAMNIR----VA 104
GSGKT+ + + + + + +++ PTREL MQ+ + + A S ++++ +A
Sbjct: 81 GSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMA 140
Query: 105 IVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLT 164
++ GG ++ + P ++AT L H + E I + V+ LV+DE D L
Sbjct: 141 LLDGGTLRRHKSWLKAEPPAILVATVASLCHML----EKHIFRIDSVRVLVVDEVDFLFY 196
Query: 165 ETFSKDLATCVSILPPKN---KRQNLLFTATMTDQVKALSDAPQTEG-KPPVFTFEVESV 220
SK + + +L + KRQ + +A++ + D Q + K V V ++
Sbjct: 197 S--SKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAI 254
Query: 221 DNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNR--------------T 266
+ +P L +++ + K L +L S+ S IIFV T
Sbjct: 255 --MPMPLCLLHRFVMCEKTNKHQVLLALLESD--APESAIIFVGEQSEKSKKAGNDPSTT 310
Query: 267 VTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVE 326
+ E L+ + K + + L M R S+ R +L++TD+A+RG+D+P
Sbjct: 311 LLMEFLKTSYKG-SLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETT 369
Query: 327 LVVNYDIP 334
+ N+D+P
Sbjct: 370 HIFNFDLP 377
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 72.0 bits (175), Expect = 2e-12
Identities = 57/220 (25%), Positives = 98/220 (43%), Gaps = 25/220 (11%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
+KSLG S + AL +P+ Q CIP IL G+D I A TGSGKT + AP++ +
Sbjct: 82 WKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQ 141
Query: 66 WSED--------------PQGMFGIVLTPTRELAMQIAEQFTAF----GSAMNIRVAIVV 107
+ P ++L P L Q+ G+ + +RV V
Sbjct: 142 LTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPL-LRVEAVC 200
Query: 108 GGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETF 167
G + + P I++TP L +++ + L+ VK++V DEAD+LL +F
Sbjct: 201 GSQGWP------DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSF 254
Query: 168 SKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTE 207
+ +++L K+ + L + + ++ + PQ +
Sbjct: 255 QNQIIRLINMLRFDEKQVSRLAKSNLGRPMEIDASVPQID 294
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 68.6 bits (166), Expect = 2e-11
Identities = 69/346 (19%), Positives = 144/346 (40%), Gaps = 24/346 (6%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F+ G + +++ L PT IQ +G++ + + G+GKT+ + P + K
Sbjct: 34 FERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMK 93
Query: 66 WS------EDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIEL 119
+ +G ++L RE A+ + + + + + +R ++G A
Sbjct: 94 MHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGNSQWQGHA--- 150
Query: 120 QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILP 179
++A+ GRL + N + L+R +LVLD D ++ ++ + L
Sbjct: 151 --ECDLLVASAGRLLQMIDNKKH--VVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLR 206
Query: 180 PKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIP-KTLETTYLLVPE 238
P Q ++ + + + +K +++ + V ++N+ + + + +V
Sbjct: 207 PH--AQLIVSSTSWSSNLKRMANKFLGQ----YTAIRVGEINNIGVRLQNIRQRVEVVNG 260
Query: 239 HVKESYLYQILTS---EKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQER 295
K L + LT+ + +I+V R E L +++ V +H QE
Sbjct: 261 LSKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNC-VPCEGIHGGRTAQEN 319
Query: 296 TNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+ F A +++AT + S LD+P + V+NYD P N D ++
Sbjct: 320 QGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYV 365
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 65.1 bits (157), Expect = 2e-10
Identities = 64/242 (26%), Positives = 102/242 (41%), Gaps = 72/242 (29%)
Query: 108 GGESIVQQAIEL--------QKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEA 159
G S +QQ I + + PH I+ TPGR++ +LN K +K VLDEA
Sbjct: 37 GKPSDIQQCINMCAKVQKLQMEAPHIIMGTPGRVSD-MLNW---RYLSPKYIKMFVLDEA 92
Query: 160 DILLTETFSKDLATCVSILPPKNKRQNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVES 219
D +L+ F + +L + Q +L +AT+ V
Sbjct: 93 DEMLSHRFKDQICDIFQML--NSNTQVVLLSATIPSDV---------------------- 128
Query: 220 VDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSL 279
LE T +K+++ I V + TLK
Sbjct: 129 ---------LEVT-------------------KKFMRDPIRILVKKE------ELTLK-- 152
Query: 280 DVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDT 339
D V+++H M Q+ER ++ +R+ ++RVLI TD+ RG+D+ + LV+NYD P N +
Sbjct: 153 DFTVSAMHGDMDQKERDVVMREYRSGSSRVLITTDLLPRGIDVQQLSLVINYDPPTNREN 212
Query: 340 FI 341
+I
Sbjct: 213 YI 214
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 57.0 bits (136), Expect = 5e-08
Identities = 34/101 (33%), Positives = 49/101 (47%), Gaps = 16/101 (15%)
Query: 4 SEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML 63
S F L +W+ E + +PT +QK IP + GRD + A TGSGKT AF P++
Sbjct: 363 SLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLV 422
Query: 64 TKWSED----------------PQGMFGIVLTPTRELAMQI 88
+D Q +VL+PTREL++Q+
Sbjct: 423 NAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 56.2 bits (134), Expect = 9e-08
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 26 QPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELA 85
+P+ Q+ IP L GRD + A G+GK+ A P+L + + IV+ PT A
Sbjct: 71 KPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRLDLKKDTIQTIVIVPTGGPA 130
Query: 86 MQIAEQFTAFGSAM-NIRVAIVVGGESIVQQAIELQKRPHFIIATPGRL 133
+Q+++ M ++V + GG + + L H +IA PGR+
Sbjct: 131 LQVSQICIQVSKHMGGVKVVMTTGGTNSGDDVLRLDDTVHMVIAAPGRI 179
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 55.1 bits (131), Expect = 2e-07
Identities = 65/290 (22%), Positives = 121/290 (41%), Gaps = 25/290 (8%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + + L+ + A +P+AIQ+ I ++G I A +G+GK F+ +L +
Sbjct: 79 FDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSISILHQ 138
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQ-KRPH 124
D + T+ L ++ A G M+ +GG ++ + +LQ + PH
Sbjct: 139 IELD--------VKATQALIQKVV---IALGDHMDASCHTCIGGTNVHAEVQKLQMEAPH 187
Query: 125 FIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKR 184
I+ TPG HV + K +K VLD+ D +L+ F + L +
Sbjct: 188 IIVGTPG----HVFDMLNWRYLSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQEL--NSNT 241
Query: 185 QNLLFTATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESY 244
Q +L +ATM V ++ E + + + + + + + E K
Sbjct: 242 QVVLPSATMPSDVLEVTKKFMRE-----HIWILVKKEELTLEGICQFYINMEREEWKLDT 296
Query: 245 LYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQE 294
L + E + +IF+N A+ L + + + D V+++H M Q+E
Sbjct: 297 LGDLY--ETLTIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 54.7 bits (130), Expect = 3e-07
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 6 FKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTK 65
F + S+ L+ + A + +P+AIQ+ I +KG I A +G+GK FA +L +
Sbjct: 18 FDDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAILILQQ 77
Query: 66 WSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKR 122
D + ++L PT+ELA QI + A G M + G ++ + +LQ +
Sbjct: 78 IELDLKATQALLLAPTQELAQQIQKVVMALGDYMGASCHACIRGTNMRAEVQKLQTK 134
>Hs13449289 [A] KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases
Length = 1924
Score = 53.5 bits (127), Expect = 6e-07
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 260 IIFVNRTVTAEILRRTLKSLDVRVTSL----------HSQMPQQERTNSVQ--------- 300
IIFV R TA +L R +K + L H Q R N+++
Sbjct: 447 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNNTMEAEFRKQEEV 506
Query: 301 --RFRAQAARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIXXXXXXXXXXXXXESLC 358
+FRA +LIAT + G+DIP LVV +D+P +++ L
Sbjct: 507 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLA 566
Query: 359 FVT-----EKDIQRVEAIEERINKKMEEFTDVGDTAV 390
E+D++ +AIE+ + K + D G+T +
Sbjct: 567 DTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDI 603
>At5g20320 [A] KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases
Length = 1589
Score = 53.5 bits (127), Expect = 6e-07
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 259 CIIFVNRTVTAEILRRTLKSLD----------VRVTSLHSQMPQQERTNSVQRFRAQAAR 308
CIIFVNR VTA L L +L+ V ++S M ++ ++RF+++
Sbjct: 469 CIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKELN 528
Query: 309 VLIATDVASRGLDIPIVELVVNYDIPGNPDTFI 341
+L+AT V GLDI LV+ YD+P +FI
Sbjct: 529 LLVATKVGEEGLDIQTCCLVIRYDLPETVTSFI 561
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 52.4 bits (124), Expect = 1e-06
Identities = 62/271 (22%), Positives = 111/271 (40%), Gaps = 27/271 (9%)
Query: 80 PTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLN 139
P +E + E+ F + +V G I QQ L+ H ++ATPG L ++
Sbjct: 196 PQQENWLYRYEEVRKFSYQPRVHPCVVYGDADIGQQIQVLEHGCHLLVATPGGLV-DLME 254
Query: 140 SGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCV--SILPPKNKRQNLLFTATMTDQV 197
G+ GL K+LVLDEAD +L F + + +P K ++F+AT +++
Sbjct: 255 RGKI---GLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPLKGIHHIMMFSATFPNEI 311
Query: 198 KALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKS 257
+ L+ + V V + + T E ++ P+ K S+L +L + S
Sbjct: 312 QMLA----RDFLDEYIFLAVGRVGSTSETITQEVVWVEEPD--KRSFLLDLLNAPG-KDS 364
Query: 258 SCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVLIATDVAS 317
++FV + L L TS+H Q++R + VL+ + S
Sbjct: 365 LTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQSQRDREGG-------PSSVLLGENPNS 417
Query: 318 RGLDIPIV-------ELVVNYDIPGNPDTFI 341
G + E N+D+P + + ++
Sbjct: 418 SGYSCGSMKTRHFKCETCFNFDLPSDIEEYV 448
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,143,110
Number of Sequences: 60738
Number of extensions: 907049
Number of successful extensions: 3958
Number of sequences better than 1.0e-05: 234
Number of HSP's better than 0.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2977
Number of HSP's gapped (non-prelim): 293
length of query: 435
length of database: 30,389,216
effective HSP length: 109
effective length of query: 326
effective length of database: 23,768,774
effective search space: 7748620324
effective search space used: 7748620324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)