ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1421 check: MH A KOG0108 RNA processing and modification mRNA cleavage and polyadenylation factor I complex, subunit RNA15
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1421 485886 488507 874
(874 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR250c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 278 3e-74
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 70 2e-11
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 69 4e-11
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 67 9e-11
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 67 1e-10
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 65 5e-10
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 65 5e-10
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 64 8e-10
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 64 8e-10
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 64 8e-10
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 62 5e-09
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 61 7e-09
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 60 1e-08
Hs7657506 [R] KOG4733 FOG: RRM domain 60 1e-08
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 60 2e-08
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 60 2e-08
At3g23830 [R] KOG0118 FOG: RRM domain 59 2e-08
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 59 2e-08
CE28070 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 59 4e-08
CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 59 4e-08
Hs8400724 [R] KOG4733 FOG: RRM domain 58 6e-08
Hs8400722 [R] KOG4733 FOG: RRM domain 58 6e-08
Hs8400720 [R] KOG4733 FOG: RRM domain 58 6e-08
Hs8400718 [R] KOG4733 FOG: RRM domain 58 6e-08
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 58 6e-08
Hs4506447 [R] KOG4733 FOG: RRM domain 58 6e-08
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 58 6e-08
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 58 6e-08
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 58 7e-08
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 58 7e-08
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 58 7e-08
At5g06210 [R] KOG0118 FOG: RRM domain 57 1e-07
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 57 2e-07
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 56 2e-07
At2g37510 [R] KOG0118 FOG: RRM domain 56 2e-07
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 56 2e-07
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 56 3e-07
At5g61030 [R] KOG0118 FOG: RRM domain 56 3e-07
At5g54580 [R] KOG0118 FOG: RRM domain 56 3e-07
At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 56 3e-07
7291799 [R] KOG0118 FOG: RRM domain 56 3e-07
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 55 4e-07
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 55 4e-07
CE24152 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans i... 55 5e-07
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 55 5e-07
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 55 5e-07
At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 55 5e-07
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 55 5e-07
At1g01080 [R] KOG0118 FOG: RRM domain 55 6e-07
7290149 [R] KOG0118 FOG: RRM domain 55 6e-07
SPAC343.07 [R] KOG0118 FOG: RRM domain 54 8e-07
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 54 8e-07
At3g52380 [R] KOG0118 FOG: RRM domain 54 8e-07
YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 54 1e-06
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 54 1e-06
HsM14916449 [R] KOG0118 FOG: RRM domain 54 1e-06
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 54 1e-06
Hs21314767 [R] KOG0118 FOG: RRM domain 54 1e-06
At1g07350 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold at... 54 1e-06
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 54 1e-06
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 53 2e-06
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 53 2e-06
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 53 2e-06
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 53 2e-06
YNL016w [R] KOG0118 FOG: RRM domain 53 2e-06
Hs8922073 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 53 2e-06
Hs4506449 [R] KOG4733 FOG: RRM domain 53 2e-06
At5g64200 [A] KOG4207 Predicted splicing factor SR protein super... 53 2e-06
7290796 [R] KOG0118 FOG: RRM domain 52 3e-06
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 52 4e-06
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 52 4e-06
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 52 4e-06
At1g74230 [R] KOG0118 FOG: RRM domain 52 4e-06
At1g73530 [R] KOG0118 FOG: RRM domain 52 4e-06
7300034 [R] KOG0118 FOG: RRM domain 52 4e-06
7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 52 4e-06
Hs7657504 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 52 5e-06
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 5e-06
7294821 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 52 5e-06
Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 51 7e-06
Hs5803137 [R] KOG0118 FOG: RRM domain 51 7e-06
7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 51 7e-06
YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily) 51 9e-06
At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 51 9e-06
>YGR250c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 781
Score = 278 bits (710), Expect = 3e-74
Identities = 176/478 (36%), Positives = 254/478 (52%), Gaps = 90/478 (18%)
Query: 12 KETSPSRDVANGNGSNDNATSTN-STEYFANTNVLTCRLKWVDPDTFITDPKKSQLLTSL 70
++TS S + + + + TST E ANTN+LT R+KW + D S++ +
Sbjct: 24 QQTSASAEAGDQSIKIERKTSTGLQLEQLANTNLLTIRIKWQLQEEE-DDHCNSRITDQI 82
Query: 71 NQLVHSNKGLLINPKEMENYQYFSDHERIAHLKENLDVYLFERGNAEVDSWYRDSDLENE 130
+ KG+ +N + E Y++ D R+ L++N D+YL+E G+ E + Y+D++ E++
Sbjct: 83 MDTIQHYKGISVNNSDTETYEFLPDTRRLQVLEQNKDIYLYEHGSQEYEKSYKDNEEEDD 142
Query: 131 KTTWFYDVVIQAQFKPYKDLQATKEGFLSELTKFSGNGNKSSSILECWSISENPHALNHP 190
W YD V+QAQFK K L+ +SEL K G ++ WSI N HAL +P
Sbjct: 143 ---WRYDTVLQAQFKYPKSLENACTD-ISELLKSEPIGQH----IDKWSIGVNKHALTYP 194
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIK 250
GN++V GI K+L+ +L +F+K+GPIL +K+I D E G+GF+SY LGSQAS CIK
Sbjct: 195 GNIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIK 254
Query: 251 ELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTEN--K 308
ELNG +NGS LF+NYHVERKERERIH+D K+N +++ F+ +F+GNLP E
Sbjct: 255 ELNGRTVNGSTLFINYHVERKERERIHWDHVKENNNDDN--FRCLFIGNLPYHNPEKVET 312
Query: 309 LLTPSIVLEKFKKAL----PDCEMVSYFFPKTNSQTNVEYSETDEDSKSESPLHLNAESF 364
L+TP V+E KK L PD +++SY+FPK ++ ++S S + N E
Sbjct: 313 LITPKEVIEVIKKELSKKFPDFDIISYYFPKRSN------------TRSSSSVSFNEEG- 359
Query: 365 PVKSKHNSDETNKRNNEKIEDPQLKTIEKHHDNGDEDIVMKNDATXXXXXXXXXXXXXXX 424
S E+NK +N + Q DED+
Sbjct: 360 -------SVESNKSSNNTNGNAQ-----------DEDM---------------------- 379
Query: 425 XXXXXXXXXXCSSQNEESPLKGYGFFRFATHEMALKCIETFNDSQWYGHQLVVNKAIQ 482
LKGYGF + HE AL IETFN W+G++LVVNKA+Q
Sbjct: 380 -------------------LKGYGFIKLINHEQALAAIETFNGFMWHGNRLVVNKAVQ 418
Score = 130 bits (328), Expect = 7e-30
Identities = 72/161 (44%), Positives = 94/161 (57%), Gaps = 24/161 (14%)
Query: 714 PMFNTPLPIPRSDEQESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXX 773
P + LPIP S++QESNLYVKH+PL W DEDLY F++ FGEIIS K+ITVGGS
Sbjct: 524 PSTSYSLPIPMSNQQESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQ 583
Query: 774 XXXXXXXX----FGKSKGYGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRR---S 826
G S+GYGFV F++PLDA++A+ +TDG +++ D L VSFAQ+R S
Sbjct: 584 QSNDSSSDNDLPVGSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRGNLS 643
Query: 827 KSIDSIKGPVSNN-----------------VNYNKKFLNAM 850
S D + N+ YNKKF+NA+
Sbjct: 644 SSDDDDQSQTDNSSKFQNFQPHNDYHKAYPTKYNKKFINAL 684
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 69.7 bits (169), Expect = 2e-11
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 187 LNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQAS 246
L+ GN++++ + ++ + L F+ FG IL K+ +D T S G+GFV + A
Sbjct: 132 LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQ 190
Query: 247 NCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTE 306
I +LNG LMN +FV + + R+ER R +E + +F V+V NLP E
Sbjct: 191 AAIDKLNGMLMNDKQVFVGHFIRRQERAR--------DENTPTPRFTNVYVKNLPKEIGE 242
Query: 307 NKL 309
++L
Sbjct: 243 DEL 245
Score = 55.1 bits (131), Expect = 5e-07
Identities = 36/121 (29%), Positives = 66/121 (53%), Gaps = 5/121 (4%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ +PK + +++L F KFG I ++ D + N S FGFV++ A++ +++
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 252 LNGNLMNGSPLFVNYHVERKERE---RIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENK 308
+NG + L+V ++ ERE R F+Q + N E+S + +++ NL + K
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS-QGANLYLKNLDDSVDDEK 347
Query: 309 L 309
L
Sbjct: 348 L 348
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/86 (31%), Positives = 50/86 (57%), Gaps = 2/86 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY++ + ++ E L +F+++G + K++L+ S GFGFV+Y+ +A + E
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSE 391
Query: 252 LNGNLMNGSPLFVNYHVERKERERIH 277
+NG ++ PL++ +RKE R H
Sbjct: 392 MNGKMIGRKPLYIAL-AQRKEDRRAH 416
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 68.6 bits (166), Expect = 4e-11
Identities = 42/123 (34%), Positives = 64/123 (51%), Gaps = 3/123 (2%)
Query: 189 HPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNC 248
H NLYV+ I T E +FAKFGPI+ + D++ + GFGFV+Y A
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKA 275
Query: 249 IKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGV--FVGNLPIFTTE 306
++ LN + +NG L+V ++ ER + Q++ E+ K++GV FV NL +
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 307 NKL 309
KL
Sbjct: 336 EKL 338
Score = 66.6 bits (161), Expect = 2e-10
Identities = 75/311 (24%), Positives = 119/311 (38%), Gaps = 28/311 (9%)
Query: 178 WSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFV 237
WS + GN++++ + ++ + L F+ FG IL KI D N +S GFGFV
Sbjct: 113 WSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFV 171
Query: 238 SYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFV 297
+ A I LNG L+NG ++V H+ RKER+ +E + ++V
Sbjct: 172 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERD--------SQLEETKAHYTNLYV 223
Query: 298 GNLPIFTTENKLLTPSIVLEKFKKALP--DCEMVSYFFPKTNSQTNVEYSETDEDSKSES 355
N+ TT+ + E F K P + K V Y + ++ K+
Sbjct: 224 KNINSETTDEQF------QELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVE 277
Query: 356 PLH---LNAESFPVKSKHNSDETNKRNNEKIEDPQLKTIEKHHDNGDEDIVMKNDATXXX 412
L+ LN E V +E ++ E +L+ + K+ ++ +KN
Sbjct: 278 ALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ---GVNLFVKN-----L 329
Query: 413 XXXXXXXXXXXXXXXXXXXXXXCSSQNEESPLKGYGFFRFATHEMALKCIETFNDSQWYG 472
+ E KG+GF F+T E A K I N G
Sbjct: 330 DDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 389
Query: 473 HQLVVNKAIQK 483
L V A +K
Sbjct: 390 KPLYVAIAQRK 400
Score = 50.8 bits (120), Expect = 9e-06
Identities = 33/98 (33%), Positives = 51/98 (51%), Gaps = 17/98 (17%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NL+VK+L DE L + F +G I SAK++ GKSKG
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN----------------GKSKG 363
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRR 825
+GFVCF P +A++A+ + ++ + L+V+ AQR+
Sbjct: 364 FGFVCFSTPEEATKAITEKN-QQIVAGKPLYVAIAQRK 400
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 67.4 bits (163), Expect = 9e-11
Identities = 38/119 (31%), Positives = 65/119 (53%), Gaps = 11/119 (9%)
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIK 250
GN++++ + +++ + L F+ FG I+ K+ +DS+ +S G+GFV YA A I+
Sbjct: 124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIE 182
Query: 251 ELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
+LNG L+N ++V + R+ER+ TKF V+V NL TT++ L
Sbjct: 183 KLNGMLLNDKQVYVGPFLRRQERD----------STANKTKFTNVYVKNLAESTTDDDL 231
Score = 59.3 bits (142), Expect = 2e-08
Identities = 45/160 (28%), Positives = 80/160 (49%), Gaps = 15/160 (9%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ + ++ T +DL F ++G I +++ +S GFGFV++ A+ ++
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKI-TSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKLLT 311
LNG+ + +V ++ ERE +++QN +E + KF+ NL + K L
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQS---SNLYV-----KNLD 326
Query: 312 PSIVLEKFKKALPDCEMVSYFFPKTNSQTNVEYSETDEDS 351
PSI EK K E+ S F T+S+ + + T + S
Sbjct: 327 PSISDEKLK------EIFSPFGTVTSSKVMRDPNGTSKGS 360
Score = 55.8 bits (133), Expect = 3e-07
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + +++ E L IF+ FG + K++ D N S G GFV++A +A+ + +
Sbjct: 319 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQ 377
Query: 252 LNGNLMNGSPLFVNYHVERKERERI 276
L+G ++ PL+V +RKE R+
Sbjct: 378 LSGKMIESKPLYVAI-AQRKEDRRV 401
Score = 53.9 bits (128), Expect = 1e-06
Identities = 35/98 (35%), Positives = 54/98 (54%), Gaps = 17/98 (17%)
Query: 730 SNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKGYG 789
+N+YVK+L D+DL F ++G+I SA ++ G GKSKG+G
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE----------------GKSKGFG 258
Query: 790 FVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSK 827
FV F+N DA+RA+ +G K + D +V AQ++S+
Sbjct: 259 FVNFENADDAARAVESLNGHKFD-DKEWYVGRAQKKSE 295
Score = 53.1 bits (126), Expect = 2e-06
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q SNLYVK+L DE L + F FG + S+K++ G SKG
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN----------------GTSKG 359
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRR 825
GFV F P +A+ AM G K+ L+V+ AQR+
Sbjct: 360 SGFVAFATPEEATEAMSQLSG-KMIESKPLYVAIAQRK 396
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 67.0 bits (162), Expect = 1e-10
Identities = 37/120 (30%), Positives = 70/120 (57%), Gaps = 3/120 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+Y++ + + E L +F++FG L +K++ D N +S GFGFVSY A+ ++E
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEE 250
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGV--FVGNLPIFTTENKL 309
+NG ++G +FV ++ ER+ +++Q +QE ++++GV ++ NL + KL
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Score = 58.9 bits (141), Expect = 3e-08
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 170 KSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTN 229
K I WS + + GN++++ + K++ + L F+ FG IL K++ D N
Sbjct: 78 KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG- 136
Query: 230 ESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERE 274
S G+ FV + A I+++NG L+N +FV RKERE
Sbjct: 137 -SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Score = 55.5 bits (132), Expect = 4e-07
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NLY+K+L DE L + F FG I SAK++ G +SKG
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG-----------------RSKG 334
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSK 827
+GFVCF +P +A++A+ +G ++ L+V+ AQR+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNG-RIVGSKPLYVALAQRKEE 373
Score = 55.5 bits (132), Expect = 4e-07
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY++ + + E L F+ FG I K++L+ S GFGFV ++ +A+ + E
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 352
Query: 252 LNGNLMNGSPLFVNYHVERKERERIH 277
+NG ++ PL+V +RKE + H
Sbjct: 353 MNGRIVGSKPLYVAL-AQRKEERKAH 377
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 65.1 bits (157), Expect = 5e-10
Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+Y++ +++ E L +F KFGP L +K++ D + +S GFGFVS+ A + E
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFK--GVFVGNL 300
+NG +NG ++V ++ ER+ ++Q +Q+ T+++ ++V NL
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Score = 62.0 bits (149), Expect = 4e-09
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 170 KSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTN 229
K + WS + + GN++V+ + K++ + L + FG IL ++ D N
Sbjct: 78 KGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG- 136
Query: 230 ESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERE 274
S G+GFV + A IK++NG L+NG +FV RKERE
Sbjct: 137 -SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 180
Score = 58.2 bits (139), Expect = 6e-08
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 18/100 (18%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NLYVK+L DE L + F FG I SAK++ GG +SKG
Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG-----------------RSKG 334
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSK 827
+GFVCF +P +A++A+ +G ++ + L+V+ AQR+ +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNG-RIVATKPLYVALAQRKEE 373
Score = 53.5 bits (127), Expect = 1e-06
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + + E L F+ FG I K++++ S GFGFV ++ +A+ + E
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTE 352
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQ 283
+NG ++ PL+V ++ER+ +++ Q
Sbjct: 353 MNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 52.0 bits (123), Expect = 4e-06
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 731 NLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKGYGF 790
N+Y+K+ D DE L F KFG +S K++T GKSKG+GF
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT----------------DESGKSKGFGF 235
Query: 791 VCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSKSIDSIK 833
V F+ DA +A+ +G +LN ++V AQ++ + +K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNG-KQIYVGRAQKKVERQTELK 277
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 65.1 bits (157), Expect = 5e-10
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIK 250
GNL+V+ + K++ + L F+ G I+ K+ D + +S G+GFV + A N I+
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIE 192
Query: 251 ELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKLL 310
+LNG ++N +FV + ++ERE + KF V+V NL TT+++L
Sbjct: 193 KLNGKVLNDKQIFVGPFLRKEERE----------SAADKMKFTNVYVKNLSEATTDDELK 242
Query: 311 T 311
T
Sbjct: 243 T 243
Score = 63.5 bits (153), Expect = 1e-09
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + +T E L +FA+FG I K++ D + S G GFV+++ S+AS + E
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNE 387
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFV----GNLPIFT 304
+NG ++ G PL+V +RKE R Q + ++ + F+ +PIFT
Sbjct: 388 MNGKMVGGKPLYVAL-AQRKEERRAKL-------QAQFSQMRPAFIPGVGPRMPIFT 436
Score = 52.0 bits (123), Expect = 4e-06
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 25/115 (21%)
Query: 721 PIPRSDEQES--------NLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXX 772
P R +E+ES N+YVK+L D++L F ++G I SA ++ G
Sbjct: 208 PFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD------ 261
Query: 773 XXXXXXXXXFGKSKGYGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSK 827
GKS+ +GFV F+NP DA+RA+ +G K + D +V AQ++S+
Sbjct: 262 ----------GKSRCFGFVNFENPEDAARAVEALNGKKFD-DKEWYVGKAQKKSE 305
Score = 51.2 bits (121), Expect = 7e-06
Identities = 32/120 (26%), Positives = 60/120 (49%), Gaps = 3/120 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ + + T ++L F ++G I ++ D + +S FGFV++ A+ ++
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA 284
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKG--VFVGNLPIFTTENKL 309
LNG + +V ++ ERE +++Q + KF G ++V NL T+ KL
Sbjct: 285 LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKL 344
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 64.3 bits (155), Expect = 8e-10
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+Y++ + +T+++ +F +FG I L ++ D N ++ GFGFV+YA A + E
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDE 320
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGV--FVGNL 300
LN G L+V ++ ERE +++Q + E+ K++GV F+ NL
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNL 371
Score = 60.8 bits (146), Expect = 9e-09
Identities = 64/295 (21%), Positives = 118/295 (39%), Gaps = 22/295 (7%)
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIK 250
GN++++ + + + L F+ FG IL K+ +D N + G+GFV + A+ I+
Sbjct: 168 GNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIE 226
Query: 251 ELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKLL 310
+NG L+N ++V +HV R+ER+ + F V++ NL TE +
Sbjct: 227 HVNGMLLNDKKVYVGHHVSRRERQ--------SKVEALKANFTNVYIKNLDTEITEQEF- 277
Query: 311 TPSIVLEKFKKALPDCEMVSYFFPKTNSQTNVEYSETDEDSKSESPLHLNAESFPVKSKH 370
S + +F + + +V K V Y+ + K+ LN + + K +
Sbjct: 278 --SDLFGQFGE-ITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD--ELNDKEYKGKKLY 332
Query: 371 --NSDETNKRNNEKIEDPQLKTIEKHHDNGDEDIVMKNDATXXXXXXXXXXXXXXXXXXX 428
+ + ++R E + + +EK + ++ +KN
Sbjct: 333 VGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITS 392
Query: 429 XXXXXXCSSQNEESPLKGYGFFRFATHEMALKCIETFNDSQWYGHQLVVNKAIQK 483
+E+ KG+GF + T E A K + N G L V A +K
Sbjct: 393 AKIMT-----DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
Score = 52.0 bits (123), Expect = 4e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL+++ + + E L F+ FG I KI+ D +S GFGFV Y +A+ + E
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTE 423
Query: 252 LNGNLMNGSPLFVNYHVERKERER 275
+N ++ G PL+V +RKE R
Sbjct: 424 MNQRMLAGKPLYVAL-AQRKEVRR 446
Score = 51.6 bits (122), Expect = 5e-06
Identities = 34/98 (34%), Positives = 52/98 (52%), Gaps = 17/98 (17%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NL++K+L + DE L F FG I SAKI+T GKSKG
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT----------------DEQGKSKG 405
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRR 825
+GFVC+ P +A++A+ + ++ + L+V+ AQR+
Sbjct: 406 FGFVCYTTPEEANKAVTEMN-QRMLAGKPLYVALAQRK 442
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 64.3 bits (155), Expect = 8e-10
Identities = 38/123 (30%), Positives = 63/123 (50%), Gaps = 9/123 (7%)
Query: 187 LNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQAS 246
L+ GN++++ + ++ + L F+ FG IL K+ +D S G+GFV + A
Sbjct: 128 LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQ 186
Query: 247 NCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTE 306
I +LNG L+N +FV + V R++R R +E F V+V NLP T+
Sbjct: 187 AAIDKLNGMLLNDKQVFVGHFVRRQDRAR--------SESGAVPSFTNVYVKNLPKEITD 238
Query: 307 NKL 309
++L
Sbjct: 239 DEL 241
Score = 56.2 bits (134), Expect = 2e-07
Identities = 41/148 (27%), Positives = 75/148 (49%), Gaps = 9/148 (6%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ +PK +T ++L F K+G I ++ D + N S FGFV++ A+ +++
Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEK 284
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKLLT 311
+NG + L+V ++ +RE + ++ EQE ++F+ + NL + K L
Sbjct: 285 MNGISLGEDVLYVGRAQKKSDREE---ELRRKFEQERISRFEKLQGSNLYL-----KNLD 336
Query: 312 PSIVLEKFKKALPDCEMVSYFFPKTNSQ 339
S+ EK K+ + V+ NSQ
Sbjct: 337 DSVNDEKLKEMFSEYGNVTSCKVMMNSQ 364
Score = 55.5 bits (132), Expect = 4e-07
Identities = 28/86 (32%), Positives = 52/86 (59%), Gaps = 2/86 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY++ + ++ E L +F+++G + K++++S S GFGFV+Y+ +A +KE
Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKE 387
Query: 252 LNGNLMNGSPLFVNYHVERKERERIH 277
+NG ++ PL+V +RKE + H
Sbjct: 388 MNGKMIGRKPLYVAL-AQRKEERQAH 412
Score = 51.2 bits (121), Expect = 7e-06
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q SNLY+K+L DE L + F ++G + S K++ G S+G
Sbjct: 326 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVM----------------MNSQGLSRG 369
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSK 827
+GFV + NP +A AM +G K+ L+V+ AQR+ +
Sbjct: 370 FGFVAYSNPEEALLAMKEMNG-KMIGRKPLYVALAQRKEE 408
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 64.3 bits (155), Expect = 8e-10
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 158 LSELTKFSGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPI 217
L+EL + NG +I +S+ + + GN++++ + K++ + L F+ FGPI
Sbjct: 103 LNELNFMALNGR---AIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPI 159
Query: 218 LVLKIILDSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIH 277
L K+ +D + +S G+GFV Y A I +LNG L+N ++V V + +R+
Sbjct: 160 LSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRD--- 215
Query: 278 FDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
E KF V+V NL ++ +L
Sbjct: 216 -------PSGEKVKFTNVYVKNLSESLSDEEL 240
Score = 60.1 bits (144), Expect = 1e-08
Identities = 35/120 (29%), Positives = 66/120 (54%), Gaps = 3/120 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ + ++L+ E+L +F +FG + +I+ +S GFGFV++ A+ +
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKG--VFVGNLPIFTTENKL 309
LNG + FV ++ ERE +++Q+ +E + K +G ++V NL T++KL
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Score = 52.4 bits (124), Expect = 3e-06
Identities = 31/94 (32%), Positives = 52/94 (54%), Gaps = 4/94 (4%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + +++T + L FA FG I K++ D + S G GFV+++ +A+ I E
Sbjct: 328 NLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAITE 386
Query: 252 LNGNLMNGSPLFV---NYHVERKERERIHFDQWK 282
+NG ++ PL+V +RK R + F Q +
Sbjct: 387 MNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMR 420
Score = 52.0 bits (123), Expect = 4e-06
Identities = 25/77 (32%), Positives = 41/77 (52%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
+LYV + +T L F + G ++ +++ D T S+G+G+V+YA AS + E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 252 LNGNLMNGSPLFVNYHV 268
LN +NG + V Y V
Sbjct: 106 LNFMALNGRAIRVMYSV 122
Score = 51.6 bits (122), Expect = 5e-06
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 17/104 (16%)
Query: 730 SNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKGYG 789
+N+YVK+L DE+L + F +FG S I+ G GKSKG+G
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE----------------GKSKGFG 267
Query: 790 FVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSKSIDSIK 833
FV F+N DA+RA+ +G K D FV AQ++S+ +K
Sbjct: 268 FVNFENSDDAARAVDALNG-KTFDDKEWFVGKAQKKSERETELK 310
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 61.6 bits (148), Expect = 5e-09
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ +P ++ ++ L +F++FG +L +K++ D N+ S FGFV++ +A +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGV--FVGNLPIFTTENKL 309
+NG ++G L+ +R ER+ +++Q +Q+ +++GV +V NL ++KL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 310 ---LTPSIVLEKFKK 321
+P V+ KK
Sbjct: 311 RKEFSPYGVITSAKK 325
Score = 60.1 bits (144), Expect = 1e-08
Identities = 39/140 (27%), Positives = 63/140 (44%), Gaps = 10/140 (7%)
Query: 170 KSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTN 229
K I WS + + GN++++ + ++ + L F+ FG IL K+ D +
Sbjct: 78 KGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG- 136
Query: 230 ESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEES 289
S GFGFV + A I +NG L+N +FV + R+ERE +
Sbjct: 137 -SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERE--------AELGARA 187
Query: 290 TKFKGVFVGNLPIFTTENKL 309
+F ++V NLP+ E L
Sbjct: 188 LEFTNIYVKNLPVDVDEQGL 207
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 61.2 bits (147), Expect = 7e-09
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 170 KSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTN 229
K + WS + + GN++++ + K++ + L F+ FG IL K++ D N
Sbjct: 78 KGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG- 136
Query: 230 ESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERE 274
S G+GFV + A I+++NG L+N +FV RKERE
Sbjct: 137 -SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Score = 59.7 bits (143), Expect = 2e-08
Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+Y++ +++ E L +F GP L +K++ D + +S GFGFVS+ A + E
Sbjct: 192 NVYIKNFGEDMDDERLKDLF---GPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 247
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGV--FVGNL 300
+NG +NG ++V ++ ER+ +++Q +Q+ T+++GV +V NL
Sbjct: 248 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Score = 57.8 bits (138), Expect = 7e-08
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 18/100 (18%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NLYVK+L DE L + F FG I SAK++ GG +SKG
Sbjct: 289 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG-----------------RSKG 331
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSK 827
+GFVCF +P +A++A+ +G ++ + L+V+ AQR+ +
Sbjct: 332 FGFVCFSSPEEATKAVTEMNG-RIVATKPLYVALAQRKEE 370
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/92 (30%), Positives = 50/92 (53%), Gaps = 2/92 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + + E L F+ FG I K++++ S GFGFV ++ +A+ + E
Sbjct: 292 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTE 349
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQ 283
+NG ++ PL+V ++ER+ +Q+ Q
Sbjct: 350 MNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 381
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 60.5 bits (145), Expect = 1e-08
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+Y++ ++ E L +F+K+G L +K++ DS+ +S GFGFVS+ A ++E
Sbjct: 308 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEE 366
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGV--FVGNLPIFTTENKL 309
+NG +NG +FV ++ ER+ ++Q ++E +GV ++ NL + KL
Sbjct: 367 MNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKL 426
Score = 58.5 bits (140), Expect = 4e-08
Identities = 37/130 (28%), Positives = 64/130 (48%), Gaps = 10/130 (7%)
Query: 170 KSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTN 229
K SI WS + + GN++++ + K++ + L F+ FG IL K++ D
Sbjct: 194 KGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG- 252
Query: 230 ESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEES 289
S G+ FV + S A I+E+NG L+ G +FV RK+RE + ++
Sbjct: 253 -SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE--------AELRSKA 303
Query: 290 TKFKGVFVGN 299
++F V++ N
Sbjct: 304 SEFTNVYIKN 313
>Hs7657506 [R] KOG4733 FOG: RRM domain
Length = 411
Score = 60.1 bits (144), Expect = 1e-08
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 23/118 (19%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY+RG+P T +DL+ + +G I+ K ILD NTN+ G+GFV + + A +
Sbjct: 53 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 112
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
L N + KQ EQ+ + +++ NLPI E +L
Sbjct: 113 LKAN-------------------GVQAQMAKQQEQDPT----NLYISNLPISMDEQEL 147
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 59.7 bits (143), Expect = 2e-08
Identities = 36/106 (33%), Positives = 57/106 (52%), Gaps = 2/106 (1%)
Query: 154 KEGFLSELTKFSGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAK 213
+E L ++ F+G ++ +I ++ N NLYV GIPK++T +L IF
Sbjct: 93 EEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKG--SNLYVSGIPKSMTLHELESIFRP 150
Query: 214 FGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKELNGNLMNG 259
FG I+ +I+ D+ T S G GFV + +A IK LNG++ +G
Sbjct: 151 FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 59.7 bits (143), Expect = 2e-08
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 178 WSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFV 237
WS + + GN++++ + + + + + F+ FG IL K+ D N S G+GFV
Sbjct: 77 WSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFV 135
Query: 238 SYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFV 297
+ A+ I ++NG L+NG ++V + RKERE+ E++ F V+V
Sbjct: 136 HFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK--------ELGEKAKLFTNVYV 187
Query: 298 GNLPIFTTENKL 309
N + KL
Sbjct: 188 KNFTEDFDDEKL 199
Score = 56.2 bits (134), Expect = 2e-07
Identities = 35/121 (28%), Positives = 61/121 (49%), Gaps = 25/121 (20%)
Query: 722 IPRSDEQE---------SNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXX 772
IPR + ++ +N+YVK+ D+ DE L +FFE +G+I S K+++
Sbjct: 166 IPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED------ 219
Query: 773 XXXXXXXXXFGKSKGYGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSKSIDSI 832
GKSKG+GFV F+ A A+ +G + +L+V+ AQ++++ +
Sbjct: 220 ----------GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 833 K 833
K
Sbjct: 270 K 270
Score = 53.5 bits (127), Expect = 1e-06
Identities = 29/86 (33%), Positives = 46/86 (52%), Gaps = 2/86 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + + + L F+ +G I K++ D S GFGFV + S+A+ + E
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTE 346
Query: 252 LNGNLMNGSPLFVNYHVERKERERIH 277
LNG ++ PL+V +RKE + H
Sbjct: 347 LNGRVVGSKPLYVAL-AQRKEERKAH 371
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 59.3 bits (142), Expect = 2e-08
Identities = 31/86 (36%), Positives = 42/86 (48%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
L+V G+ L F FG + +I D T S GFGFVS++ A+N IKE+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 253 NGNLMNGSPLFVNYHVERKERERIHF 278
+G +NG + VN ER R F
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRSSF 122
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 59.3 bits (142), Expect = 2e-08
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNE-----SMGFGFVSYALGSQAS 246
NLYV G+PKN+T+ DL +F+ +G I+ +I+ D+ T+E S G GF+ + +A
Sbjct: 197 NLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEAD 256
Query: 247 NCIKELNGNLMNGS--PLFVNY 266
IKELNG S P+ V +
Sbjct: 257 RAIKELNGTTPKNSTEPITVKF 278
Score = 52.0 bits (123), Expect = 4e-06
Identities = 40/162 (24%), Positives = 69/162 (41%), Gaps = 23/162 (14%)
Query: 151 QATKEGFLSELTKFSGNGNKSSSILECWSISENPHALNHPG---NLYVRGIPKNLTKEDL 207
QAT S + N N +++ + + N + N P NL V +P+ ++++++
Sbjct: 71 QATANNAASNNNNNNNNTNNNNNN----NATANNNNNNEPDPKTNLIVNYLPQTMSQDEI 126
Query: 208 VPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYH 267
+F FG + K+I D T +S+G+GFV+Y A I LNG + + V+
Sbjct: 127 RSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSI- 185
Query: 268 VERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
ES K ++V LP T++ L
Sbjct: 186 ---------------ARPSSESIKGANLYVSGLPKNMTQSDL 212
>CE28070 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 420
Score = 58.5 bits (140), Expect = 4e-08
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL++ +P++ DL+ FA FG IL K+ +D TN S FGFVSY A+N I
Sbjct: 336 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 395
Query: 252 LNGNLMNGSPLFVNYHVER 270
+NG + L V V+R
Sbjct: 396 MNGFQIGSKRLKVQLKVDR 414
>CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 584
Score = 58.5 bits (140), Expect = 4e-08
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL++ +P++ DL+ FA FG IL K+ +D TN S FGFVSY A+N I
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 559
Query: 252 LNGNLMNGSPLFVNYHVER 270
+NG + L V V+R
Sbjct: 560 MNGFQIGSKRLKVQLKVDR 578
>Hs8400724 [R] KOG4733 FOG: RRM domain
Length = 389
Score = 58.2 bits (139), Expect = 6e-08
Identities = 40/145 (27%), Positives = 61/145 (41%), Gaps = 30/145 (20%)
Query: 165 SGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIIL 224
S N N SSS W NLY+RG+P + T +DLV + +G I+ K IL
Sbjct: 10 SSNNNSSSSSNSGWDQLSKT-------NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAIL 62
Query: 225 DSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQN 284
D TN+ G+GFV + + A + L + + KQ
Sbjct: 63 DKTTNKCKGYGFVDFDSPAAAQKAVSALKAS-------------------GVQAQMAKQQ 103
Query: 285 EQEESTKFKGVFVGNLPIFTTENKL 309
EQ+ + +++ NLP+ E +L
Sbjct: 104 EQDPT----NLYISNLPLSMDEQEL 124
>Hs8400722 [R] KOG4733 FOG: RRM domain
Length = 373
Score = 58.2 bits (139), Expect = 6e-08
Identities = 40/145 (27%), Positives = 61/145 (41%), Gaps = 30/145 (20%)
Query: 165 SGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIIL 224
S N N SSS W NLY+RG+P + T +DLV + +G I+ K IL
Sbjct: 10 SSNNNSSSSSNSGWDQLSKT-------NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAIL 62
Query: 225 DSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQN 284
D TN+ G+GFV + + A + L + + KQ
Sbjct: 63 DKTTNKCKGYGFVDFDSPAAAQKAVSALKAS-------------------GVQAQMAKQQ 103
Query: 285 EQEESTKFKGVFVGNLPIFTTENKL 309
EQ+ + +++ NLP+ E +L
Sbjct: 104 EQDPT----NLYISNLPLSMDEQEL 124
>Hs8400720 [R] KOG4733 FOG: RRM domain
Length = 419
Score = 58.2 bits (139), Expect = 6e-08
Identities = 40/145 (27%), Positives = 61/145 (41%), Gaps = 30/145 (20%)
Query: 165 SGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIIL 224
S N N SSS W NLY+RG+P + T +DLV + +G I+ K IL
Sbjct: 43 SSNNNSSSSSNSGWDQLSKT-------NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAIL 95
Query: 225 DSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQN 284
D TN+ G+GFV + + A + L + + KQ
Sbjct: 96 DKTTNKCKGYGFVDFDSPAAAQKAVSALKAS-------------------GVQAQMAKQQ 136
Query: 285 EQEESTKFKGVFVGNLPIFTTENKL 309
EQ+ + +++ NLP+ E +L
Sbjct: 137 EQDPT----NLYISNLPLSMDEQEL 157
>Hs8400718 [R] KOG4733 FOG: RRM domain
Length = 406
Score = 58.2 bits (139), Expect = 6e-08
Identities = 40/145 (27%), Positives = 61/145 (41%), Gaps = 30/145 (20%)
Query: 165 SGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIIL 224
S N N SSS W NLY+RG+P + T +DLV + +G I+ K IL
Sbjct: 43 SSNNNSSSSSNSGWDQLSKT-------NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAIL 95
Query: 225 DSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQN 284
D TN+ G+GFV + + A + L + + KQ
Sbjct: 96 DKTTNKCKGYGFVDFDSPAAAQKAVSALKAS-------------------GVQAQMAKQQ 136
Query: 285 EQEESTKFKGVFVGNLPIFTTENKL 309
EQ+ + +++ NLP+ E +L
Sbjct: 137 EQDPT----NLYISNLPLSMDEQEL 157
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 58.2 bits (139), Expect = 6e-08
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 23/140 (16%)
Query: 690 STGSPRNNSIYGPMNMPLTYSSSNPMFNTPLPIPRSDEQESNLYVKHLPLDWRDEDLYQF 749
S G NN+ GP + N ++P+ +++ ++NL V +LP + E+L
Sbjct: 6 SNGPTCNNTANGPTTI-------NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSL 58
Query: 750 FEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKGYGFVCFQNPLDASRAMYHTDGL 809
F GEI S K++ G+S GYGFV + +P DA +A+ +GL
Sbjct: 59 FGSIGEIESCKLV---------------RDKITGQSLGYGFVNYIDPKDAEKAINTLNGL 103
Query: 810 KLNSDNTLFVSFAQRRSKSI 829
+L + T+ VS+A+ S SI
Sbjct: 104 RLQT-KTIKVSYARPSSASI 122
Score = 57.0 bits (136), Expect = 1e-07
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV G+PK +T+++L +F+++G I+ +I++D T S G GF+ + +A IK
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
LNG G+ + ++ + Q Q + ++ G F +N L
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLL 243
Score = 55.5 bits (132), Expect = 4e-07
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 177 CWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGF 236
C S ++ + + NL V +P+N+T+E+L +F G I K++ D T +S+G+GF
Sbjct: 25 CSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 237 VSYALGSQASNCIKELNGNLMNGSPLFVNY 266
V+Y A I LNG + + V+Y
Sbjct: 85 VNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114
>Hs4506447 [R] KOG4733 FOG: RRM domain
Length = 403
Score = 58.2 bits (139), Expect = 6e-08
Identities = 40/145 (27%), Positives = 61/145 (41%), Gaps = 30/145 (20%)
Query: 165 SGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIIL 224
S N N SSS W NLY+RG+P + T +DLV + +G I+ K IL
Sbjct: 43 SSNNNSSSSSNSGWDQLSKT-------NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAIL 95
Query: 225 DSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQN 284
D TN+ G+GFV + + A + L + + KQ
Sbjct: 96 DKTTNKCKGYGFVDFDSPAAAQKAVSALKAS-------------------GVQAQMAKQQ 136
Query: 285 EQEESTKFKGVFVGNLPIFTTENKL 309
EQ+ + +++ NLP+ E +L
Sbjct: 137 EQDPT----NLYISNLPLSMDEQEL 157
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/77 (36%), Positives = 48/77 (61%), Gaps = 2/77 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV G+PK +T+++L +F+++G I+ +I++D T S G GF+ + +A IK
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 252 LNGNLMNGS--PLFVNY 266
LNG +G+ P+ V +
Sbjct: 193 LNGQKPSGATEPITVKF 209
Score = 56.6 bits (135), Expect = 2e-07
Identities = 44/153 (28%), Positives = 73/153 (46%), Gaps = 28/153 (18%)
Query: 680 IPVLTNSSTNSTGSPRNNSIYGPMNMPLTYSSSNPMFNTPLPIPR---SDEQESNLYVKH 736
+ +++ + P +N+ GP SS+N N P P+ +D+ ++NL V +
Sbjct: 2 VMIISTMEPQVSNGPTSNTSNGP-------SSNNR--NCPSPMQTGATTDDSKTNLIVNY 52
Query: 737 LPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKGYGFVCFQNP 796
LP + E+ F GEI S K++ G+S GYGFV + +P
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVR---------------DKITGQSLGYGFVNYIDP 97
Query: 797 LDASRAMYHTDGLKLNSDNTLFVSFAQRRSKSI 829
DA +A+ +GL+L + T+ VS+A+ S SI
Sbjct: 98 KDAEKAINTLNGLRLQT-KTIKVSYARPSSASI 129
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL V +P+N+T+E+ +F G I K++ D T +S+G+GFV+Y A I
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 252 LNGNLMNGSPLFVNY 266
LNG + + V+Y
Sbjct: 107 LNGLRLQTKTIKVSY 121
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 58.2 bits (139), Expect = 6e-08
Identities = 35/121 (28%), Positives = 64/121 (51%), Gaps = 6/121 (4%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
+++V + K+++ E L F KFG + K+I D T +S G+GFVS+ A N I
Sbjct: 28 HVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAG 87
Query: 252 LNGNLMNGSPLFVNYHVER---KERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENK 308
+NG + + N+ + + R+++ F+Q + + ++T V+VGN+ TT+
Sbjct: 88 MNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNT---SVYVGNISQQTTDAD 144
Query: 309 L 309
L
Sbjct: 145 L 145
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 57.8 bits (138), Expect = 7e-08
Identities = 30/92 (32%), Positives = 47/92 (50%)
Query: 181 SENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYA 240
+E L G L+VR +P T+EDL +F+K+GP+ L +DS T + GF F+++
Sbjct: 392 NEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFM 451
Query: 241 LGSQASNCIKELNGNLMNGSPLFVNYHVERKE 272
A E++G + G L V +KE
Sbjct: 452 FPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKE 483
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 57.8 bits (138), Expect = 7e-08
Identities = 30/92 (32%), Positives = 47/92 (50%)
Query: 181 SENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYA 240
+E L G L+VR +P T+EDL +F+K+GP+ L +DS T + GF F+++
Sbjct: 392 NEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFM 451
Query: 241 LGSQASNCIKELNGNLMNGSPLFVNYHVERKE 272
A E++G + G L V +KE
Sbjct: 452 FPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKE 483
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 57.8 bits (138), Expect = 7e-08
Identities = 45/148 (30%), Positives = 74/148 (49%), Gaps = 24/148 (16%)
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIK 250
GN++V+ +P++ T +DL F+ FG I+ K+ S+ +S G+GFV + A IK
Sbjct: 96 GNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSH-GKSKGYGFVQFKEKKAAKKVIK 154
Query: 251 ---ELNGNLMNGSPLFVN-YHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTE 306
L+G L+ G+ + V Y+ E K+ E ++ S F F+ N P +E
Sbjct: 155 NFSSLDGLLLGGNRIVVELYNPEIKKGE----------SKKTSATFTNCFIKNFPFDASE 204
Query: 307 NKLLTPSIVLEKFKKALPDCEMVSYFFP 334
+LL +LE++ K + S FFP
Sbjct: 205 AELLE---LLERYGK------VTSLFFP 223
Score = 51.2 bits (121), Expect = 7e-06
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 715 MFNTPLPIPRSDE---QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXX 771
+ N + + + DE + N++VK+LP D+ +DL F FGEI+S K+ T
Sbjct: 78 LHNRQIRVMKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVAT-------- 129
Query: 772 XXXXXXXXXXFGKSKGYGFVCFQNPLDASRAMYH---TDGLKLNSD 814
GKSKGYGFV F+ A + + + DGL L +
Sbjct: 130 --------TSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGN 167
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 57.0 bits (136), Expect = 1e-07
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
L++ G+ T++ L F+K G ++ +I++D ++ S GFGFV++A +A + E
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 253 NGNLMNGSPLFVNY 266
NG +NG +FV+Y
Sbjct: 96 NGQQLNGRTIFVDY 109
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 56.6 bits (135), Expect = 2e-07
Identities = 28/83 (33%), Positives = 49/83 (58%)
Query: 190 PGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCI 249
P LYV + N+T++ L IF FG I +++++DS T S G+GF++++ A +
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 250 KELNGNLMNGSPLFVNYHVERKE 272
++LNG + G P+ V + ER +
Sbjct: 309 EQLNGFELAGRPMKVGHVTERTD 331
>At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 352
Score = 56.2 bits (134), Expect = 2e-07
Identities = 30/94 (31%), Positives = 53/94 (55%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
+YV GIP +LT+ DL+ +F+++G I+ + +I D T +S GF F++Y + L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 253 NGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQ 286
NG L+ G + V++ K+ E + +QN +
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEETRRQNRE 131
>At2g37510 [R] KOG0118 FOG: RRM domain
Length = 142
Score = 56.2 bits (134), Expect = 2e-07
Identities = 35/125 (28%), Positives = 60/125 (48%)
Query: 171 SSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNE 230
SSS+L S+ + L+V G+ + T E L FA FG ++ ++I D ++
Sbjct: 14 SSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGR 73
Query: 231 SMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEEST 290
S GFGFV+YA A E+N ++G +FV+ R+ R + + + + + T
Sbjct: 74 SKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQQEPLRPSSESGFT 133
Query: 291 KFKGV 295
K +
Sbjct: 134 TNKTI 138
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 56.2 bits (134), Expect = 2e-07
Identities = 36/151 (23%), Positives = 75/151 (48%), Gaps = 6/151 (3%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ + +T+E+L F++ G I K++ D +S GFGFV ++ +A + +K
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKT 363
Query: 252 LNGNLMNGSPLFVNYHVERKERE-RIHFDQWKQNEQEESTKFKGVFVGN-LPIFTTENKL 309
+G + +G PL+V ++++R+ ++ + E +S+ V G P++ T
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTH- 422
Query: 310 LTPSIVLEKFKKALPDCEMVSYFFPKTNSQT 340
P +V + + M+ +P + + T
Sbjct: 423 --PGMVYQSYPLMWKSANMIGSSYPNSEAVT 451
Score = 55.5 bits (132), Expect = 4e-07
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY++ + +++++ L FA+FG I+ L I D N G+ FV++ A +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDEN-RLCRGYAFVNFDNPEDARRAAET 260
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEES--TKFKGVFVGNLPIFTTENKL 309
+NG L+V ++ ERE++ +Q+K+ +E+ K ++V N+ + TE +L
Sbjct: 261 VNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320
Score = 50.8 bits (120), Expect = 9e-06
Identities = 60/295 (20%), Positives = 121/295 (40%), Gaps = 43/295 (14%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
+LYV + ++T+ L FA+F + +++ D+++ S+ +G+ ++ A+ I++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKLLT 311
N +L+NG + V + V + R VFV NLP + +T
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARR--------------NGVGNVFVKNLP------ESVT 124
Query: 312 PSIVLEKFKK--ALPDCEMVSYFFPKTNSQTNVEYSETDEDSKSESPLHLNAESFPVKSK 369
+++ + FKK + C++ + K+ V++ + ED+ + LN+ K
Sbjct: 125 NAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQ--EDAAHAAIQTLNSTIVADKEI 182
Query: 370 HNSDETNKRNNEKIEDPQLKTIEKHHD-NGDEDIVMKNDATXXXXXXXXXXXXXXXXXXX 428
+ K + K E+ K+ D + ED++ + A
Sbjct: 183 YVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI---------- 232
Query: 429 XXXXXXCSSQNEESPLKGYGFFRFATHEMALKCIETFNDSQWYGHQLVVNKAIQK 483
+++E +GY F F E A + ET N +++ L V +A +K
Sbjct: 233 --------AKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 55.8 bits (133), Expect = 3e-07
Identities = 34/122 (27%), Positives = 59/122 (47%), Gaps = 9/122 (7%)
Query: 178 WSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFV 237
WS + + GN++++ + K + + + F+ FG IL K+ +D + S G+GFV
Sbjct: 107 WSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFV 165
Query: 238 SYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFV 297
+ A N I+++NG L+ G +FV R +R R E + +F V+V
Sbjct: 166 HFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR--------ELGETAKQFTNVYV 217
Query: 298 GN 299
N
Sbjct: 218 KN 219
Score = 55.5 bits (132), Expect = 4e-07
Identities = 35/98 (35%), Positives = 52/98 (52%), Gaps = 17/98 (17%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NLYVK+L D+ L + FE +G I SAK++T G+SKG
Sbjct: 315 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN----------------GRSKG 358
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRR 825
+GFVCF+ P +A+ A+ + K+ L+V+ AQR+
Sbjct: 359 FGFVCFEKPEEATSAVTEMNS-KMVCSKPLYVAIAQRK 395
Score = 53.5 bits (127), Expect = 1e-06
Identities = 37/114 (32%), Positives = 65/114 (56%), Gaps = 8/114 (7%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N+YV+ + KE L +FAKFG I +++ + +S GFGFV++A +A ++
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQA 271
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQ---EESTKFKGV--FVGNL 300
L+ + + G+ L ++ +K+ ER H + K++EQ E K++GV +V NL
Sbjct: 272 LHDSTIEGTDLKLHVCRAQKKSER-HAELKKKHEQHKAERMQKYQGVNLYVKNL 324
Score = 50.8 bits (120), Expect = 9e-06
Identities = 36/108 (33%), Positives = 53/108 (48%), Gaps = 18/108 (16%)
Query: 727 EQESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSK 786
+Q +N+YVK+ + E L + F KFG I S +++TV GKSK
Sbjct: 210 KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-----------------GKSK 252
Query: 787 GYGFVCFQNPLDASRAMYHT-DGLKLNSDNTLFVSFAQRRSKSIDSIK 833
G+GFV F NP +A A+ D +D L V AQ++S+ +K
Sbjct: 253 GFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELK 300
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 55.8 bits (133), Expect = 3e-07
Identities = 26/78 (33%), Positives = 47/78 (59%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
L++ G+ ++ ++ L F K+G ++ ++ILD T S GFGFV++ AS+ I+ L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 253 NGNLMNGSPLFVNYHVER 270
+G ++G + VNY +R
Sbjct: 102 DGRDLHGRVVKVNYANDR 119
>At5g54580 [R] KOG0118 FOG: RRM domain
Length = 156
Score = 55.8 bits (133), Expect = 3e-07
Identities = 28/83 (33%), Positives = 45/83 (53%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL+V G+ K T E L FA+FG + K++ D + S GFGFV YA ++ I
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 252 LNGNLMNGSPLFVNYHVERKERE 274
++G ++G +F Y R++ +
Sbjct: 117 MDGKFLDGWVIFAEYARPREQSQ 139
>At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 492
Score = 55.8 bits (133), Expect = 3e-07
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL++ IP+ ++L F FG +L K+ +D T S FGFVSY + A N I
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENK 308
+NG + G L V + + F + Q + + K++ +F I T N+
Sbjct: 410 MNGRHLGGKKLKVQLKRDSNNGQPSKFRRKIQCCSKITEKYQIIFATKPNITTNRNR 466
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 55.8 bits (133), Expect = 3e-07
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIK 250
G +Y++ + +++ + + F+ FG IL + D + N S G+GFV + A I+
Sbjct: 113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGN-SRGYGFVHFDSEEAARAAIE 171
Query: 251 ELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
++NG L N + V + R++R EQE++T FK ++V NL TE L
Sbjct: 172 KVNGMLCNNQKVHVVKFIPRRDR-----------EQEKATHFKNLYVKNLSEEFTEQHL 219
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 55.5 bits (132), Expect = 4e-07
Identities = 25/87 (28%), Positives = 49/87 (55%), Gaps = 2/87 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY+ G+P+ +T++D+ +F++FG I+ ++++D T S G F+ + S+A I
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 252 LNGNLMNGS--PLFVNYHVERKERERI 276
NG+ GS P+ V + + + +
Sbjct: 167 FNGHKPPGSSEPIAVKFAANPNQNKNV 193
Score = 54.3 bits (129), Expect = 8e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL V +P+N+T+++L +F+ G + K+I D S+G+GFV+Y A I
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 252 LNGNLMNGSPLFVNY 266
LNG + + V+Y
Sbjct: 81 LNGLRLQSKTIKVSY 95
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 55.5 bits (132), Expect = 4e-07
Identities = 32/98 (32%), Positives = 51/98 (51%), Gaps = 2/98 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
+++V IP T+E L IF++ GP+L LK++ D + + GFGF Y A + ++
Sbjct: 17 SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRN 76
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEES 289
LNG + G L V+ E+ R+ Q Q Q E+
Sbjct: 77 LNGYEIGGRTLRVDNAC--TEKSRMEMQQLLQGPQVEN 112
>CE24152 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
Length = 331
Score = 55.1 bits (131), Expect = 5e-07
Identities = 30/102 (29%), Positives = 51/102 (49%), Gaps = 2/102 (1%)
Query: 184 PHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGS 243
PH N LYV G +++T++ L+ F FG ++ + I +D + + GFGFV + +
Sbjct: 6 PH--NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAE 63
Query: 244 QASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNE 285
A+ I +N + + G + VN+ K ER W +E
Sbjct: 64 DAAMAIDNMNESELFGKTIRVNFARPPKATERSQKPVWADDE 105
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 55.1 bits (131), Expect = 5e-07
Identities = 34/98 (34%), Positives = 50/98 (50%), Gaps = 17/98 (17%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NLYVK++ D D+ L F FG I SAK++ G+SKG
Sbjct: 341 QGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMV----------------DENGRSKG 384
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRR 825
+GFVCF+ P +A+ A+ + K+ L+V+ AQR+
Sbjct: 385 FGFVCFEKPEEATAAVTDMNS-KMIGAKPLYVALAQRK 421
Score = 53.9 bits (128), Expect = 1e-06
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ I ++L + L F+ FG I K+++D N S GFGFV + +A+ + +
Sbjct: 344 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTD 402
Query: 252 LNGNLMNGSPLFVNYHVERKERER 275
+N ++ PL+V +RKE R
Sbjct: 403 MNSKMIGAKPLYVAL-AQRKEDRR 425
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 55.1 bits (131), Expect = 5e-07
Identities = 34/98 (34%), Positives = 50/98 (50%), Gaps = 17/98 (17%)
Query: 728 QESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKSKG 787
Q NLYVK++ D D+ L F FG I SAK++ G+SKG
Sbjct: 341 QGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMV----------------DENGRSKG 384
Query: 788 YGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRR 825
+GFVCF+ P +A+ A+ + K+ L+V+ AQR+
Sbjct: 385 FGFVCFEKPEEATAAVTDMNS-KMIGAKPLYVALAQRK 421
Score = 53.9 bits (128), Expect = 1e-06
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ I ++L + L F+ FG I K+++D N S GFGFV + +A+ + +
Sbjct: 344 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTD 402
Query: 252 LNGNLMNGSPLFVNYHVERKERER 275
+N ++ PL+V +RKE R
Sbjct: 403 MNSKMIGAKPLYVAL-AQRKEDRR 425
>At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 453
Score = 55.1 bits (131), Expect = 5e-07
Identities = 31/104 (29%), Positives = 50/104 (47%), Gaps = 8/104 (7%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL++ IP+ ++L F FG +L K+ +D T S FGF+SY + A N I
Sbjct: 355 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 414
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGV 295
+NG ++G L V + Q +Q +Q ++ F G+
Sbjct: 415 MNGCQLSGKKLKVQLKRDN--------GQQQQQQQSKNPLFNGL 450
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 55.1 bits (131), Expect = 5e-07
Identities = 30/96 (31%), Positives = 49/96 (50%)
Query: 184 PHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGS 243
P + P LYV + N+T++ L IF FG I +++I+D+ T S G+GF++Y
Sbjct: 328 PKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNAD 387
Query: 244 QASNCIKELNGNLMNGSPLFVNYHVERKERERIHFD 279
A +++LNG + G + V ER + D
Sbjct: 388 DAKKALEQLNGFELAGRLMKVGNVTERLDMNTTSLD 423
>At1g01080 [R] KOG0118 FOG: RRM domain
Length = 293
Score = 54.7 bits (130), Expect = 6e-07
Identities = 46/166 (27%), Positives = 72/166 (42%), Gaps = 13/166 (7%)
Query: 149 DLQATKEGFLSELTKFSGNGNKSSSILECWSISENPHALNHPGNLYVRGIPKNLTKEDLV 208
+L E E+ K NK S + + P P LYV IP++ L+
Sbjct: 71 ELSVLDEEKEEEVVKGEAEPNKDSVVSKA-----EPVKKPRPCELYVCNIPRSYDIAQLL 125
Query: 209 PIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHV 268
+F FG ++ +++ + T ES G G+V+ + A I L+G + G + V Y V
Sbjct: 126 DMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSV 185
Query: 269 E-----RKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
+ R+ E ++ K E K V+VGNLP FT + L
Sbjct: 186 DMNPGTRRNPEVLNSTPKKILMYESQHK---VYVGNLPWFTQPDGL 228
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL + +P+++T +L +F+ GPI KI+ D T S G+GFV Y S + + I++
Sbjct: 94 NLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQK 153
Query: 252 LNGNLMNGSPLFVNY 266
LNG + L V+Y
Sbjct: 154 LNGFYVRNKRLKVSY 168
>SPAC343.07 [R] KOG0118 FOG: RRM domain
Length = 609
Score = 54.3 bits (129), Expect = 8e-07
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 190 PGNLYVRGIPKNLT--KEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASN 247
P NL+V+ + N+ + L +F+KFG I + +T S G+GFVS++ +A
Sbjct: 418 PCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQ 477
Query: 248 CIKELNGNLMNGSPLFVNYHVERKERER 275
I LNG L LFVNY +R++R++
Sbjct: 478 AINTLNGVLFGKKRLFVNYAEKREDRKK 505
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 54.3 bits (129), Expect = 8e-07
Identities = 26/77 (33%), Positives = 47/77 (60%), Gaps = 2/77 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV G+PK ++++++ +F+++G I+ +I++D T S G GF+ + +A IK
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 252 LNGNLMNGS--PLFVNY 266
LNG G+ P+ V +
Sbjct: 186 LNGQKPLGAAEPITVKF 202
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 54.3 bits (129), Expect = 8e-07
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 182 ENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYAL 241
+ A G LYV +P +T +L IF + G ++ ++I+ D T+ S GFGFV+
Sbjct: 107 QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS 166
Query: 242 GSQASNCIKELNGNLMNGSPLFVNY-HVERKERERIHFDQWKQNEQEESTKFKGVFVGNL 300
+A ++ N + + G + VN+ V R + + + N + V+ GNL
Sbjct: 167 IEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNL 226
>YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 685
Score = 53.9 bits (128), Expect = 1e-06
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
L+VR IP+++T E L F+ F PI ++ D+N S GFGFVS+A+ + +
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTN-KRSRGFGFVSFAVEDDTKEALAKA 86
Query: 253 NGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKG 294
NG L V+ +R++R + + +++ E S K G
Sbjct: 87 RKTKFNGHILRVDI-AKRRDRSKKTSEVVEKSTPESSEKITG 127
>At5g51300 [A] KOG0119 Splicing factor 1/branch point binding protein (RRM
superfamily)
Length = 804
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/73 (36%), Positives = 41/73 (55%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY+ +P L + L+ +F+ FG I++ K+I D T S G+GFV YA A+ ++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 252 LNGNLMNGSPLFV 264
+NG G L V
Sbjct: 541 MNGYRFEGRTLAV 553
>HsM14916449 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 53.5 bits (127), Expect = 1e-06
Identities = 32/102 (31%), Positives = 51/102 (49%), Gaps = 5/102 (4%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
+YV +P +LT DL IF+K+G ++ + I+ D +T +S G F+ + A NC + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 253 N-----GNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEES 289
N G ++ S N R R +FD+ K E ES
Sbjct: 72 NNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGES 113
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 53.5 bits (127), Expect = 1e-06
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
+++V IP T+E L IF++ GP++ +++ D T + G+GF Y A + ++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 252 LNGNLMNGSPLFVNYHVERKERERI 276
LNG +G L V+ K +E +
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEEL 101
>Hs21314767 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 53.5 bits (127), Expect = 1e-06
Identities = 32/102 (31%), Positives = 51/102 (49%), Gaps = 5/102 (4%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
+YV +P +LT DL IF+K+G ++ + I+ D +T +S G F+ + A NC + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 253 N-----GNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEES 289
N G ++ S N R R +FD+ K E ES
Sbjct: 72 NNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGES 113
>At1g07350 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment
factor (SAF-B)
Length = 385
Score = 53.5 bits (127), Expect = 1e-06
Identities = 32/89 (35%), Positives = 50/89 (55%), Gaps = 4/89 (4%)
Query: 189 HPGN-LYVRGIPKNLTKEDLVPIFAKFGPIL---VLKIILDSNTNESMGFGFVSYALGSQ 244
+PGN LYV G+ +T+ DL FAK G ++ + ++LD T ES GFGF+S
Sbjct: 72 NPGNSLYVTGLSHRVTERDLEDHFAKEGKVVDVTDVHLVLDPWTRESRGFGFISMKSVGD 131
Query: 245 ASNCIKELNGNLMNGSPLFVNYHVERKER 273
A+ CI+ L+ +++ G + V R+ R
Sbjct: 132 ANRCIRSLDHSVLQGRVITVEKARRRRGR 160
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 53.5 bits (127), Expect = 1e-06
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 725 SDEQESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGK 784
S E +NL V +LP ++++ F GEI S K+I + G+
Sbjct: 140 STETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSK--GQ 197
Query: 785 SKGYGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSKSIDSIKG 834
S GYGFV + P DA +A+ +GL+L + T+ VSFA+ S D+IKG
Sbjct: 198 SLGYGFVNYVRPQDAEQAVNVLNGLRL-QNKTIKVSFAR---PSSDAIKG 243
Score = 52.0 bits (123), Expect = 4e-06
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDS-NTNESMGFGFVSYALGSQASNCIK 250
NLYV G+PK +T+++L IFA FG I+ +I+ ++ N ++ G GF+ + +A+ I
Sbjct: 245 NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAII 304
Query: 251 ELNG 254
LNG
Sbjct: 305 ALNG 308
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/81 (34%), Positives = 47/81 (57%)
Query: 190 PGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCI 249
P LYV + N+T++ L IF FG I + ++ DS+T S G+GF++++ A +
Sbjct: 228 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 287
Query: 250 KELNGNLMNGSPLFVNYHVER 270
++LNG + G P+ V + ER
Sbjct: 288 EQLNGFELAGRPMRVGHVTER 308
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/81 (34%), Positives = 47/81 (57%)
Query: 190 PGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCI 249
P LYV + N+T++ L IF FG I + ++ DS+T S G+GF++++ A +
Sbjct: 246 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 305
Query: 250 KELNGNLMNGSPLFVNYHVER 270
++LNG + G P+ V + ER
Sbjct: 306 EQLNGFELAGRPMRVGHVTER 326
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 53.1 bits (126), Expect = 2e-06
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
+++V + + + L F FG + K+I D+NT +S G+GFVSY +A I++
Sbjct: 104 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 163
Query: 252 LNGNLMNGSPLFVNYHVER--KERERIHFDQWKQNE--QEESTKFKGVFVGNLPIFTTE 306
+NG + + N+ + + + H+++ +E + S V+VGN+ T +
Sbjct: 164 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTED 222
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 53.1 bits (126), Expect = 2e-06
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
+++V + + + L F FG + K+I D+NT +S G+GFVSY +A I++
Sbjct: 136 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 195
Query: 252 LNGNLMNGSPLFVNYHVER--KERERIHFDQWKQNE--QEESTKFKGVFVGNLPIFTTE 306
+NG + + N+ + + + H+++ +E + S V+VGN+ T +
Sbjct: 196 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTED 254
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 52.8 bits (125), Expect = 2e-06
Identities = 28/103 (27%), Positives = 46/103 (44%)
Query: 178 WSISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFV 237
W+ + + NL+V + N+ E L F F L ++ D T S G+GFV
Sbjct: 149 WAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 208
Query: 238 SYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQ 280
S+ A N + + G +NG PL +N+ +R ++ Q
Sbjct: 209 SFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQ 251
>Hs8922073 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 377
Score = 52.8 bits (125), Expect = 2e-06
Identities = 35/108 (32%), Positives = 53/108 (48%), Gaps = 6/108 (5%)
Query: 181 SENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYA 240
SEN + P L+V IP DL +F +FG IL ++II N S GFGFV++
Sbjct: 87 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF--NERGSKGFGFVTFE 144
Query: 241 LGSQASNCIKELNGNLMNGSPLFVNYHVER----KERERIHFDQWKQN 284
+ A ++L+G ++ G + VN R K+ + + WK N
Sbjct: 145 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLN 192
>Hs4506449 [R] KOG4733 FOG: RRM domain
Length = 407
Score = 52.8 bits (125), Expect = 2e-06
Identities = 33/118 (27%), Positives = 52/118 (43%), Gaps = 23/118 (19%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLY+RG+ T +DLV + +G I+ K ILD TN+ G+GFV + S A +
Sbjct: 57 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 116
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
L + + KQ EQ+ + +++ NLP+ E +L
Sbjct: 117 LKAS-------------------GVQAQMAKQQEQDPT----NLYISNLPLSMDEQEL 151
>At5g64200 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 303
Score = 52.8 bits (125), Expect = 2e-06
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 184 PHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGS 243
P ++ +L V I T +DL P+FAK+G ++ + I D T +S GF FV Y
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 244 QASNCIKELNGNLMNGSPLFVNYHVERKERERI 276
+A ++ L+G +++G + V + E+I
Sbjct: 69 EAHKAVERLDGRVVDGREITVQFAKYGPNAEKI 101
>7290796 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 52.4 bits (124), Expect = 3e-06
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 180 ISENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSY 239
+ +P A N NL V +P+++T +L +F GPI +I+ D T S G+ FV +
Sbjct: 76 LMNDPRASNT--NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDF 133
Query: 240 ALGSQASNCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGN 299
+ IK LNG + L V+Y ES K ++V N
Sbjct: 134 TSEMDSQRAIKVLNGITVRNKRLKVSY----------------ARPGGESIKDTNLYVTN 177
Query: 300 LPIFTTENKLLT 311
LP T+++L T
Sbjct: 178 LPRTITDDQLDT 189
Score = 51.2 bits (121), Expect = 7e-06
Identities = 30/89 (33%), Positives = 41/89 (45%), Gaps = 2/89 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV +P+ +T + L IF K+G I+ I+ D T G FV Y +A I
Sbjct: 172 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 231
Query: 252 LNGNLMNG--SPLFVNYHVERKERERIHF 278
LN + G PL V E + + HF
Sbjct: 232 LNNVIPEGGSQPLSVRLAEEHGKAKAAHF 260
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 52.0 bits (123), Expect = 4e-06
Identities = 28/96 (29%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Query: 187 LNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQAS 246
+N L+VR + ++DL F+ GPI ++ + T E+ G+GFV++++ A
Sbjct: 1 MNSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQ 60
Query: 247 NCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWK 282
KEL ++G L +++ RK R + DQ K
Sbjct: 61 RAAKELKNKKLHGRILRLDFATPRK-RSEVDTDQNK 95
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 52.0 bits (123), Expect = 4e-06
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
N++V+ I ++ E L +F ++GP +K+I D++ +S GFGFV Y A + +
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLD 258
Query: 252 LNGNLMNGSPLFV---NYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENK 308
L+G ++G L+V +ER R F++ + E+ +++ NL + K
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
Query: 309 L 309
L
Sbjct: 318 L 318
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 52.0 bits (123), Expect = 4e-06
Identities = 25/74 (33%), Positives = 39/74 (51%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
++YV P T+E+L F+ G I ++I+ D T GF F+ +A A +++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 252 LNGNLMNGSPLFVN 265
+NG NG PL VN
Sbjct: 66 MNGAEFNGRPLRVN 79
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 52.0 bits (123), Expect = 4e-06
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 157 FLSELTKF----SGNGNKSSSILE---CWSISENPHALNHPGNLYVRGIPKNLTKEDLVP 209
FLS++ + S + SSS+L+ C S S+ ++V GI + + L
Sbjct: 3 FLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSK----------IFVGGISYSTDEFGLRE 52
Query: 210 IFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVE 269
F+K+G ++ KII+D T S GF FV++ +ASN + +L+G ++G + VNY E
Sbjct: 53 AFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYATE 111
Query: 270 R 270
R
Sbjct: 112 R 112
>At1g73530 [R] KOG0118 FOG: RRM domain
Length = 181
Score = 52.0 bits (123), Expect = 4e-06
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 156 GFLSELTKFSGNGNKSSSILECWSISENPHALNHPGN-LYVRGIPKNLTKEDLVPIFAKF 214
G +S + G SS L S S P + + P LYV G+ T++ L F +F
Sbjct: 41 GVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQF 100
Query: 215 GPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKELNGNLMNGSPLFVNYHVERKERE 274
G ++ + +++D N GF F+ Y +A I+ ++G ++G +FV R +
Sbjct: 101 GNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMS 160
Query: 275 R 275
R
Sbjct: 161 R 161
>7300034 [R] KOG0118 FOG: RRM domain
Length = 251
Score = 52.0 bits (123), Expect = 4e-06
Identities = 34/118 (28%), Positives = 59/118 (49%), Gaps = 16/118 (13%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL + +P+++T+ +L +F+KFG I KII T S +GFV Y QA+ +
Sbjct: 42 NLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNG 101
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKL 309
++G + R +R ++ F + + E S+ ++VGNLP + E K+
Sbjct: 102 MDG------------YETRGKRLKVAFARPSEYESTSSS----LYVGNLPTYMDEKKV 143
>7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 168
Score = 52.0 bits (123), Expect = 4e-06
Identities = 32/136 (23%), Positives = 60/136 (43%), Gaps = 26/136 (19%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NL V +P+ +T+E++ +F+ G + K++ D + +S+G+GFV+Y A +
Sbjct: 27 NLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYVRAEDAEKAVNT 86
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLP---------- 301
LNG + + V+Y ES K ++V LP
Sbjct: 87 LNGLRLQNKVIKVSY----------------ARPSSESIKGANLYVSGLPKNLSQPDLEG 130
Query: 302 IFTTENKLLTPSIVLE 317
+F + K++T I+ +
Sbjct: 131 MFASFGKIITSRILCD 146
>Hs7657504 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 367
Score = 51.6 bits (122), Expect = 5e-06
Identities = 30/85 (35%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 181 SENPHALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYA 240
SEN + + P L+V IP DL +F +FG IL ++II N S GFGFV++
Sbjct: 102 SENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF--NERGSKGFGFVTFE 159
Query: 241 LGSQASNCIKELNGNLMNGSPLFVN 265
+ A ++L+G ++ G + VN
Sbjct: 160 NSADADRAREKLHGTVVEGRKIEVN 184
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 51.6 bits (122), Expect = 5e-06
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + ++T L +F FG IL K++ +S GFGFV + A +
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSA 170
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTENKLLT 311
L+G+++ G LFV + + ER + +Q N V+V NL T++ L T
Sbjct: 171 LHGSMVYGKKLFVAKFINKDERAAMAGNQDSTN----------VYVKNLIETVTDDCLHT 220
Score = 51.6 bits (122), Expect = 5e-06
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 192 NLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKE 251
NLYV+ + +++ + L IF +G I+ K++ N S GFGFV ++ ++ +
Sbjct: 305 NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRY 363
Query: 252 LNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTK 291
LNG L++G P+ V ERKE Q+ Q + + T+
Sbjct: 364 LNGFLVDGKPIVVRV-AERKEDRIKRLQQYFQAQPRQYTQ 402
Score = 51.2 bits (121), Expect = 7e-06
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 726 DEQESNLYVKHLPLDWRDEDLYQFFEKFGEIISAKIITVGGSIXXXXXXXXXXXXXFGKS 785
++ +N+YVK+L D+ L+ F ++G + S ++ G G+S
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG----------------MGRS 241
Query: 786 KGYGFVCFQNPLDASRAMYHTDGLKLNSDNTLFVSFAQRRSKSIDSIKGPVSNN 839
+G+GFV F NP +A +AM GL+L S LFV A ++ + + +K S+N
Sbjct: 242 RGFGFVNFCNPENAKKAMESLCGLQLGS-KKLFVGKALKKDERREMLKQKFSDN 294
>7294821 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 287
Score = 51.6 bits (122), Expect = 5e-06
Identities = 30/91 (32%), Positives = 48/91 (51%), Gaps = 2/91 (2%)
Query: 186 ALNHPGNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQA 245
A + P L+V IP DL +F +FG IL ++II N S GFGFV++A + A
Sbjct: 192 AKSQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIF--NERGSKGFGFVTFANSNDA 249
Query: 246 SNCIKELNGNLMNGSPLFVNYHVERKERERI 276
+ L+G ++ G + VN R + +++
Sbjct: 250 ERARERLHGTVVEGRKIEVNNATARVQTKKV 280
>Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 407
Score = 51.2 bits (121), Expect = 7e-06
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSY----ALGSQAS 246
G L+V G+ + T+E L F+++G ++ I+ D TN+S GFGFV + +G+ +
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 247 NCIKELNGNLMNGSPLFVNYHVERKERERIHFDQWKQNEQEESTKFKGVFVGNLPIFTTE 306
+ L+G ++ P + R + + W++ + + +K +FVG +P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPK---EGWQKGPRSDYSKSNKIFVGGIPHNCGE 126
Query: 307 NKL 309
+L
Sbjct: 127 TEL 129
>Hs5803137 [R] KOG0118 FOG: RRM domain
Length = 157
Score = 51.2 bits (121), Expect = 7e-06
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 191 GNLYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIK 250
G L+V G+ N ++ L F+ FGPI + ++ D T S GFGF+++ AS ++
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 251 ELNGNLMNGSPLFVNY 266
+NG ++G + V++
Sbjct: 66 AMNGESLDGRQIRVDH 81
>7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 673
Score = 51.2 bits (121), Expect = 7e-06
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 37/200 (18%)
Query: 188 NHPGN---LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQ 244
N PGN ++ IPK++ +++L+P+F G I L++++D T + G+ FV++
Sbjct: 158 NVPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREA 217
Query: 245 ASNCIKEL-NGNLMNGSPLFVNYHVE--RKERERIHFDQWKQNEQEESTKFKG------- 294
A N +++L N + G L +N V R I + K EE K G
Sbjct: 218 AVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTGKKIGVTI 277
Query: 295 ------VFVGNLPIFTTENKLLTPSIVLEKFKKALPDCEMVSYFFPKTNSQTNVEYSETD 348
+FVGN+P ++L +E+F K P V + YS D
Sbjct: 278 SFNNHRLFVGNIPKNRDRDEL------IEEFSKHAPGLYEV------------IIYSSPD 319
Query: 349 EDSKSESPLHLNAESFPVKS 368
+ K+ L ES S
Sbjct: 320 DKKKNRGFCFLEYESHKAAS 339
>YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 887
Score = 50.8 bits (120), Expect = 9e-06
Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 37/240 (15%)
Query: 193 LYVRGIPKNLTKEDLVPIFAK-------------FGPILV--LKIILDSNTNESMGFGFV 237
+ V+G+P LT ++L F K GP L+ +KI+ D N ES FGF+
Sbjct: 4 IIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRN-GESRRFGFI 62
Query: 238 SYALGSQASNCIKELNGNLMNGSPL-------FVNYHVER--KERERIHFDQWKQNE--- 285
Y A + ++ NG+ +N S + F + V + KE+ R ++++ E
Sbjct: 63 GYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEKRREALKRFREKEEKL 122
Query: 286 -QEESTKFKGVFV---GNLPIFTTENKLLTPSIVLEKFKKALPDCEMVSYFFPKTNSQTN 341
QEE+ K K V N+ +NK L E + P ++ S+ +
Sbjct: 123 LQEENRKKKKVDENKHSNIDDEIRKNKQLQ-----EFMETMKPSSQVTSWEKVGIDKSIE 177
Query: 342 VEYSETDEDSKSESPLHLNAESFPVKSKHNSDETNKRNNEKIEDPQLKTIEKHHDNGDED 401
E + +E+ S L A + +K ++N DE E D + + ++ D ED
Sbjct: 178 DEKLKREEEDSSVQGNSLLAHALALKEENNKDEAPNLVIENESDDEYSALNRNRDEDQED 237
>At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 169
Score = 50.8 bits (120), Expect = 9e-06
Identities = 27/92 (29%), Positives = 46/92 (49%), Gaps = 4/92 (4%)
Query: 193 LYVRGIPKNLTKEDLVPIFAKFGPILVLKIILDSNTNESMGFGFVSYALGSQASNCIKEL 252
+YV G+P KE L+ F +FG I+ + ++ D T+ S G+GFV++ A+ K+
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
Query: 253 N----GNLMNGSPLFVNYHVERKERERIHFDQ 280
N G + N FV V+ + + + Q
Sbjct: 75 NPTIEGRITNCKLAFVGAKVKPNQSQPSNLPQ 106
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,441,758
Number of Sequences: 60738
Number of extensions: 1926886
Number of successful extensions: 7485
Number of sequences better than 1.0e-05: 84
Number of HSP's better than 0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 6851
Number of HSP's gapped (non-prelim): 506
length of query: 874
length of database: 30,389,216
effective HSP length: 115
effective length of query: 759
effective length of database: 23,404,346
effective search space: 17763898614
effective search space used: 17763898614
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)