ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1459 good K KOG1598 Transcription Transcription initiation factor TFIIIB, Brf1 subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1459 497874 499541 556
(556 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR246c [K] KOG1598 Transcription initiation factor TFIIIB Brf1 ... 700 0.0
SPBC13E7.10c [K] KOG1598 Transcription initiation factor TFIIIB ... 321 2e-87
Hs22035556 [K] KOG1598 Transcription initiation factor TFIIIB Br... 251 2e-66
HsM4507355 [K] KOG1598 Transcription initiation factor TFIIIB Br... 231 2e-60
CE02738 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 ... 223 6e-58
ECU05g0500 [K] KOG1598 Transcription initiation factor TFIIIB Br... 156 9e-38
At3g09360 [K] KOG1598 Transcription initiation factor TFIIIB Brf... 154 3e-37
At2g45100 [K] KOG1598 Transcription initiation factor TFIIIB Brf... 146 7e-35
7300249 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 ... 123 8e-28
At2g01280 [K] KOG1598 Transcription initiation factor TFIIIB Brf... 107 5e-23
Hs22035558 [K] KOG1598 Transcription initiation factor TFIIIB Br... 105 1e-22
7300246 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 ... 103 7e-22
At1g30450_2 [K] KOG1598 Transcription initiation factor TFIIIB B... 89 2e-17
Hs22035560 [K] KOG1598 Transcription initiation factor TFIIIB Br... 72 2e-12
SPAC16E8.16 [K] KOG1597 Transcription initiation factor TFIIB 66 1e-10
Hs22035562 [K] KOG1598 Transcription initiation factor TFIIIB Br... 65 3e-10
CE27396 [K] KOG1597 Transcription initiation factor TFIIB 65 4e-10
7297699 [K] KOG1597 Transcription initiation factor TFIIB 64 5e-10
HsM8922844 [K] KOG1598 Transcription initiation factor TFIIIB Br... 63 1e-09
Hs4504193 [K] KOG1597 Transcription initiation factor TFIIB 62 2e-09
ECU06g1100i [K] KOG1597 Transcription initiation factor TFIIB 55 3e-07
At2g41630 [K] KOG1597 Transcription initiation factor TFIIB 55 4e-07
>YGR246c [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 596
Score = 700 bits (1806), Expect = 0.0
Identities = 369/602 (61%), Positives = 445/602 (73%), Gaps = 70/602 (11%)
Query: 12 CKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQA 71
CKNC T+F RD+SN N+L+CK CG+V+E+N IVSEVTFGE S GAAV+QG+F+ A Q+
Sbjct: 4 CKNCHGTEFERDLSNANNDLVCKACGVVSEDNPIVSEVTFGETSAGAAVVQGSFIGAGQS 63
Query: 72 HPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQGR 131
H F G +AL SRE TLNNARRKL+AVSYAL+IPEY+TDAAFQWY+LAL+NNFVQGR
Sbjct: 64 HAAF---GGSSALESREATLNNARRKLRAVSYALHIPEYITDAAFQWYKLALANNFVQGR 120
Query: 132 KSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVKLPLADPSL 191
+SQNVIA+CLY+ACRKE+THHMLIDFSSRLQVSVYSIGATFLK+ KKL I +LPLADPSL
Sbjct: 121 RSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITELPLADPSL 180
Query: 192 FIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRT 251
FIQHFAEKL+L DKKIKV++DAVKLAQ MS+DWM+EGRRP RMNNLRRT
Sbjct: 181 FIQHFAEKLDLADKKIKVVKDAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRT 240
Query: 252 HSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESKPPSFDKNR 311
H+EIVA+SHVAEETLQQRLNEFKNT +AKLSV++FR+++ E E++PPSF KNR
Sbjct: 241 HTEIVAVSHVAEETLQQRLNEFKNTKAAKLSVQKFRENDVE------DGEARPPSFVKNR 294
Query: 312 LKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLYYLKKLSERRKAEFSR 371
KE+KIKDSLD +EM +TSEEA+++NPILTQVLG QELSSKEVL+YLK+ SERR R
Sbjct: 295 KKERKIKDSLDKEEMFQTSEEALNKNPILTQVLGEQELSSKEVLFYLKQFSERRARVVER 354
Query: 372 IKATHGIDGEDLH------------------------------------------KTEKD 389
IKAT+GIDGE+++ KT ++
Sbjct: 355 IKATNGIDGENIYHEGSENETRKRKLSEVSIQNEHVEGEDKETEGTEEKVKKVKTKTSEE 414
Query: 390 KKRS-----LDEIDGYSLEKDPYRPRNLHLLPTTASLLSKVSDHPENLDDVDDAELDSHL 444
KK + D IDGYSLE DPY PRNLHLLPTT + LSKVSD P+NL+DVDD EL++HL
Sbjct: 415 KKENESGHFQDAIDGYSLETDPYCPRNLHLLPTTDTYLSKVSDDPDNLEDVDDEELNAHL 474
Query: 445 LDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASGNTSLRKKRSKRTNRNQS----- 499
L+EEASKLKERIWI +N D+L+EQESKRLKQEAD+A+GNTS++KKR++R N +S
Sbjct: 475 LNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATGNTSVKKKRTRRRNNTRSDEPTK 534
Query: 500 ---SASIVKVQVD-----GLPLXXXXXXXXXXXXXXXGGVKNLLQKTTFSKKINYDAING 551
+A+ + + D GL VKN+LQK +FSKKINYDAI+G
Sbjct: 535 TVDAAAAIGLMSDLQDKSGLH-AALKAAEESGDFTTADSVKNMLQKASFSKKINYDAIDG 593
Query: 552 LF 553
LF
Sbjct: 594 LF 595
>SPBC13E7.10c [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 500
Score = 321 bits (822), Expect = 2e-87
Identities = 201/553 (36%), Positives = 301/553 (54%), Gaps = 61/553 (11%)
Query: 6 QVSSRKCKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAF 65
Q+ + C NCGST F D ++ C CG+V E+++IVSEVTFGEAS GAAV+QG+
Sbjct: 5 QLFAMGCPNCGSTTFESDTAS--GNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSL 62
Query: 66 VSANQAHPTFMS--HSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLAL 123
VS +Q H + Q ++ SRE T+ N RR++ A++ AL + E +AA +++ LA+
Sbjct: 63 VSNDQTHARTFGGPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAI 122
Query: 124 SNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK 183
+NNF++GR+SQ V+A+CLYI CR +T HMLIDFS LQ++V+ +G+TFLKL + L+
Sbjct: 123 NNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLR-PN 181
Query: 184 LPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXX 243
LPL DPSL+I FA LE G + +V DA++L M+RDWM GRRP
Sbjct: 182 LPLLDPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIAA 241
Query: 244 RMNNLRRTHSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESK 303
RMNN RR+ E+V + VA+ T+Q+RL+EFK T S LS+ +FR+ E +S
Sbjct: 242 RMNNFRRSVREVVHVVKVADITIQKRLDEFKLTESGDLSIADFRNIWLE-------GQSD 294
Query: 304 PPSFDKNRLKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLYYLKKLSE 363
PPSF KN+ ++ + + + + R P E+ S+E LS+
Sbjct: 295 PPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTP----DFDGNEVKSEE-------LSQ 343
Query: 364 RRKAEFSRIKATHGIDGEDLHKTEKDKKRSLDEIDGYSLEKDPYRPRNLHLLPTTASLLS 423
K E D ++ K + + DE+ SL+ +
Sbjct: 344 TVKVESQETPVHLKADEREIRKEVTETLKG-DELRKISLQVN-----------------V 385
Query: 424 KVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASGN 483
K S+ L+DVDD E++ LLD++ K ++W+++N DYL E+E+K LK + DL G
Sbjct: 386 KFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAKNLKLQEDLKKG- 444
Query: 484 TSLRKKRSKRTNRNQSSASIVKVQVDGLPLXXXXXXXXXXXXXXXGGVKNLLQKTTFSKK 543
+R+ R +R R + S S DG+ K ++Q+ FSKK
Sbjct: 445 -IVRQPRKRRRYRPRDSTS------DGI------------ADTAAESAKEMMQQRAFSKK 485
Query: 544 INYDAINGLFGQK 556
INY+A++ LF ++
Sbjct: 486 INYEALDMLFDEE 498
>Hs22035556 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 677
Score = 251 bits (642), Expect = 2e-66
Identities = 183/583 (31%), Positives = 282/583 (47%), Gaps = 74/583 (12%)
Query: 7 VSSRKCKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFV 66
++ R C+ CG TD D + + +C CG V E+N IVSEV F E+S G + G FV
Sbjct: 1 MTGRVCRGCGGTDIELDAAR--GDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV 58
Query: 67 SANQAHPTFMSHSGQNALMSRET---TLNNARRKLKAVSYALNIPEYVTDAAFQWYRLAL 123
S + A T G + + +E+ TL N RR + + L + ++ D AF ++++A+
Sbjct: 59 SLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAV 118
Query: 124 SNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK 183
S + +GRK +VIAACLY+ CR E T HML+D S LQV+VY +G TFL LA++L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAREL-CIN 177
Query: 184 LPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXX 243
P DP L+I FA LE G+K +V A++L Q M RDWM+ GRRP
Sbjct: 178 APAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAA 237
Query: 244 RMNNLRRTHSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESK 303
RM++ RRT E++++ V E TL++RL EF++T +++L++ EF + E E
Sbjct: 238 RMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLE-------EECD 290
Query: 304 PPSFD--KNRLKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLYYLKK- 360
PPS+ + +L+ K+++ L +K++ E E S + L +K L L K
Sbjct: 291 PPSYTAGQRKLRMKQLEQVL-SKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKD 349
Query: 361 ---------LSERRKAEFSRIKATHGIDGEDLHKTEKDKKRSLDEIDGYSLE---KDPYR 408
L E ++A +DL++ E G S E + P
Sbjct: 350 GSTEDTASSLCGEEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAG-SPEWGGRPPAL 408
Query: 409 PRNLHLLPTTASL---------LSKVSDHPEN--------LDDVDDAELDSHLLDEEASK 451
L LPT ASL +S S P++ L +DD E+D ++L+E ++
Sbjct: 409 GSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEAR 468
Query: 452 LKERIWIDINGDYLIEQESK--RLKQEADLASGNTSLRKKRSKRTNRNQSSASIVKVQVD 509
+K +W+ N +YL EQ K R+ +E +L KK KR Q+S +
Sbjct: 469 VKAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTA------- 521
Query: 510 GLPLXXXXXXXXXXXXXXXGGVKNLLQKTTFSKKINYDAINGL 552
++ +L++ S KINY + GL
Sbjct: 522 ------------------REAIEKMLEQKKISSKINYSVLRGL 546
>HsM4507355 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 675
Score = 231 bits (590), Expect = 2e-60
Identities = 172/582 (29%), Positives = 273/582 (46%), Gaps = 74/582 (12%)
Query: 7 VSSRKCKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFV 66
++ R C+ CG TD D + + +C CG V E+N IVSEV F E+S G + G FV
Sbjct: 1 MTGRVCRGCGGTDIELDAAR--GDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFV 58
Query: 67 SANQAHPTFMSHSGQNALMSRET---TLNNARRKLKAVSYALNIPEYVTDAAFQWYRLAL 123
S + A T G + + +E+ TL + RR + + L + ++ D AF ++++A+
Sbjct: 59 SLDGAGKTPTLGGGFHVNLGKESRAQTLQDGRRHIHHLGNQLQLNQHCLDTAFNFFKMAV 118
Query: 124 SNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK 183
S + +GRK +VIAACLY+ CR E T HML+ S LQV+VY +G TFL LA++L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLVLSDLLQVNVYVLGKTFLLLAREL-CIN 177
Query: 184 LPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXX 243
P DP L+I FA LE G+K +V A++L Q M RDWM+ GR P
Sbjct: 178 APAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRGPSGLCGGALLVAA 237
Query: 244 RMNNLRRTHSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESK 303
RM++ RRT E++++ V E TL++RL EF++T +++L++ EF + E E
Sbjct: 238 RMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLE-------EECD 290
Query: 304 PPSF--DKNRLKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLYYLKKL 361
PPS+ + +L+ K+++ L K LE E +S ++ + L K+
Sbjct: 291 PPSYTAGQRKLRMKQLEQVLSKK--LEEVEGEISSYQDAIEIELENSRPKRGGLQPGKRW 348
Query: 362 SER--------RKAEFSRIKATHGIDGE-------------DLHKTEKDKKRSLDEIDGY 400
R R R + G E L + K + G
Sbjct: 349 LHRGHRVQLVWRGGHRGRGAGSRGQPPEQRLIPGAPWWCPRQLGSSRKPRVGRQTPALGS 408
Query: 401 SLEKDPYRPRNLHLLPTTASLLSKVSDHPEN--------LDDVDDAELDSHLLDEEASKL 452
L+ P +L + + +S S P++ L +DD E+D ++L+E +++
Sbjct: 409 LLDPLP-TAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARV 467
Query: 453 KERIWIDINGDYLIEQESK--RLKQEADLASGNTSLRKKRSKRTNRNQSSASIVKVQVDG 510
K +W+ N +YL EQ K R+ +E +L KK KR Q+S +
Sbjct: 468 KAELWMRENAEYLREQREKEARIAKEKELGIYKEHKPKKSCKRREPIQASTA-------- 519
Query: 511 LPLXXXXXXXXXXXXXXXGGVKNLLQKTTFSKKINYDAINGL 552
++ +L++ S KINY + GL
Sbjct: 520 -----------------REAIEKMLEQKKISSKINYSVLRGL 544
>CE02738 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 759
Score = 223 bits (568), Expect = 6e-58
Identities = 169/582 (29%), Positives = 273/582 (46%), Gaps = 98/582 (16%)
Query: 10 RKCKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAA-VIQGAFVSA 68
R C NCGS++ D + + C CG V EE+ +V+E F E + G+ + G FVS+
Sbjct: 3 RTCSNCGSSEIDEDAAR--GDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFVSS 60
Query: 69 NQAHPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLALSNNFV 128
+A + +G + SRE T R+ + + L I + + AF +Y++ +S N
Sbjct: 61 ERAAAN--NFNGMGSQESREMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKMCVSRNLT 118
Query: 129 QGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVKLPLAD 188
+GR +V+A C+YI CR E T H+L+DFS Q++V+ +G L++ L+I LP D
Sbjct: 119 RGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRI-NLPSTD 177
Query: 189 PSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNL 248
P L+I FA L+ GDK+ +V+ A +L Q M RDWM GRRP R N
Sbjct: 178 PCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMSTGRRPTGICGAALLIAARSLNF 237
Query: 249 RRTHSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESKPPSFD 308
R+ ++IV + H++E +++RL+EF T S L++ EF + E +E PP++
Sbjct: 238 NRSINDIVRVVHISEGVIRKRLDEFSQTPSGSLTIDEFSTVDLEHSE-------DPPAYR 290
Query: 309 KNRLKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLYYLKKLSERRKAE 368
++R K ++ ++ + +E+A S + + LG E + L ++RK +
Sbjct: 291 ESRRKARE-------DQLRKEAEQAES----MKEQLGEMEAHVEAA------LDKKRKEK 333
Query: 369 FSRIKATHGIDGEDLHKTEKDKKRSLDE--IDGYSLEK--------------------DP 406
FS+ I E+L K E DK ++L E ++ LEK DP
Sbjct: 334 FSKSPYARMI-SENLGK-ENDKMQTLTETVVESSGLEKGADEMVRNEIINTVFNAAEEDP 391
Query: 407 YRPRNLH----LLPTTASLLSKVSDHPE---------NLD---DVDDAELDSHLLDEEAS 450
+L P+ SL K + PE N D D+ D+E+DS++L E
Sbjct: 392 CTSNSLEKYDKYRPSLESLGIKRTSEPEPEPVPHPIVNADLEEDISDSEIDSYILTESEV 451
Query: 451 KLKERIWIDINGDYLIEQESKRLKQEADLASGNTSLRKKRSKRTNRNQSSASIVKVQVDG 510
+K W+ NG+ + E E K K+E +L G KK+ R+NR + S
Sbjct: 452 AIKTDYWMKANGEAMKEIEEK--KRERELNGG----VKKKKPRSNRKTDTTS-------- 497
Query: 511 LPLXXXXXXXXXXXXXXXGGVKNLLQKTTFSKKINYDAINGL 552
V+ ++ + S K+NY+ + L
Sbjct: 498 --------------TSVASAVEKVIAEKKLSNKVNYEMLKDL 525
>ECU05g0500 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 395
Score = 156 bits (394), Expect = 9e-38
Identities = 105/367 (28%), Positives = 173/367 (46%), Gaps = 21/367 (5%)
Query: 12 CKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQA 71
C NC DF D + + C CG+V EEN+IV+ + F A + G V +
Sbjct: 4 CSNCSCEDFAEDTAQ--GAVYCTTCGMVQEENAIVASLNFN-TEGPKATLNGQIVGID-- 58
Query: 72 HPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQGR 131
S + + + N + + +L + + +F+WY+L L N +G+
Sbjct: 59 -----SRNVGTGFVDSSYYIKNT---IGGICASLGLGVDHVECSFRWYKLLLQYNLSKGK 110
Query: 132 KSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVKLPLADPSL 191
++AC+YI CR+ERT HML+DFS+ L + V+ IG +FLK+ L I +PL DPSL
Sbjct: 111 SILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNMLGI-DIPLIDPSL 169
Query: 192 FIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRT 251
++ F +L + +V+ +++L M RDW+ GRRP R+ R+
Sbjct: 170 YMPRFVSRLRF--ESNEVLGLSLRLISRMKRDWIVVGRRPNNLCGAALLIASRIVGEERS 227
Query: 252 HSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESKPPSFDKNR 311
EI I HV+ T+ +RL E +T SA LS++EF + E + + K K +
Sbjct: 228 IYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNATWIDKEEDPPAVKMKRMEMAKKQ 287
Query: 312 LKEKKIKDSL--DTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLY---YLKKLSERRK 366
E ++L T + S+ + I +L +E +E+++ Y + ER K
Sbjct: 288 ECESGSTETLLYSTPQSSIDSDASSDSEEIERNILSPEESKKREIVWEEMYGDFMREREK 347
Query: 367 AEFSRIK 373
S ++
Sbjct: 348 RMKSGVR 354
>At3g09360 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 600
Score = 154 bits (390), Expect = 3e-37
Identities = 153/570 (26%), Positives = 238/570 (40%), Gaps = 84/570 (14%)
Query: 12 CKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQA 71
C +C V I L C +CG + E +EVTF + + G + G V + Q+
Sbjct: 4 CNHCVKN--VPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQS 61
Query: 72 HPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDA---AFQWYRLALSNNFV 128
T SRE AR +L + AL I + D A +++ +A+ NF
Sbjct: 62 GIT----------SSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFT 111
Query: 129 QGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVKL---- 184
+GR+++ V A+CLY+ CR+ +LIDFSS L+VSVY +G+ +L+L + L +V+
Sbjct: 112 KGRRTELVQASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYE 171
Query: 185 PLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXR 244
L DPS+F+ F+ L G V+ A + +M RDW+ GR+P
Sbjct: 172 KLVDPSIFMDRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAAL 231
Query: 245 MNNLRRTHSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESKP 304
+ ++ + ++IV I H+ E TL +RL EF +T S L+V E R+ E+ +RS KP
Sbjct: 232 SHGIKCSKTDIVNIVHICEATLTKRLIEFGDTDSGNLNVNELRERESH----KRSFTMKP 287
Query: 305 PSFDKNRLKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLYYLKKLSER 364
S ++EAV SK Y L E
Sbjct: 288 TS-----------------------NKEAVL----------CMHQDSKPFGY---GLCED 311
Query: 365 RKAEFSRIKA--THGIDGEDLHKTEKDK--KRSLDEIDG--YSLEKDPYRPRNLHLLPTT 418
+F + G + + EK++ K + +E +G SL D L
Sbjct: 312 CYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREENEGGISSLNHDEQLYHLRIYLGCV 371
Query: 419 ASLLSKVSD----HPENLDDVD------DAELDSHLLDEEASKLKERIWIDINGDYLIEQ 468
A K D H + D+ D D E++ ++ +EE + K W ++N DYL EQ
Sbjct: 372 AEKGEKDKDGAEEHADTSDESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQ 431
Query: 469 ESKRLKQEADLASGNTSLRKKRSK-----RTNRNQSSASIVKVQVDGLPLXXXXXXXXXX 523
+K EA L + + +L+ S R + A K + +
Sbjct: 432 AAK----EAALKAASEALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAP 487
Query: 524 XXXXXGGVKNLLQKTTFSKKINYDAINGLF 553
V+ L K S INYD + LF
Sbjct: 488 PATAVEAVRRTLDKKRLSSVINYDVLESLF 517
>At2g45100 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 565
Score = 146 bits (369), Expect = 7e-35
Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 19/300 (6%)
Query: 12 CKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQA 71
CK+CG V I L C +CG + E + +EVTF + + G + G + + Q
Sbjct: 4 CKHCGKN--VPGIRPYDAALSCDLCGRILENFNFSTEVTFVKNAAGQSQASGNILKSVQ- 60
Query: 72 HPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDA---AFQWYRLALSNNFV 128
SG ++ SRE + A +L + AL I + D A ++R+AL +NF
Sbjct: 61 -------SGMSS--SRERIIRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFT 111
Query: 129 QGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVKL---- 184
+GR + V ++CLY+ CR+ + +LIDFSS L+VSVY +G+ +L+L L I +
Sbjct: 112 KGRSKELVFSSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYE 171
Query: 185 PLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXR 244
L DPS+FI F+ L G K++ A + +M RDWM GR+P
Sbjct: 172 KLVDPSIFIPRFSNMLLKGAHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAAL 231
Query: 245 MNNLRRTHSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESKP 304
+ ++ + ++IV I H+ E TL +RL EF +T +A L+ E E E ++ KP
Sbjct: 232 SHGIKCSKTDIVNIVHICEATLTKRLIEFGDTEAASLTADELSKTEREKETAALRSKRKP 291
>7300249 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 184
Score = 123 bits (308), Expect = 8e-28
Identities = 69/178 (38%), Positives = 100/178 (55%), Gaps = 13/178 (7%)
Query: 11 KCKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSA-- 68
KC+NCGS + D N + +C CG V E++ IVSEV F E +GAA I G FVSA
Sbjct: 6 KCRNCGSNEIEED--NARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAI-GQFVSAES 62
Query: 69 -----NQAHPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLAL 123
N + F SG SRE T+ A++ + + L + ++ D A ++++AL
Sbjct: 63 SGGATNYGYGKFQVGSGTE---SREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMAL 119
Query: 124 SNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQI 181
+ +GRKS ++ AAC+Y+ CR E T H+LID S Q+ Y +G T+LKL+ L I
Sbjct: 120 GRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCI 177
>At2g01280 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 257
Score = 107 bits (267), Expect = 5e-23
Identities = 66/221 (29%), Positives = 111/221 (49%), Gaps = 9/221 (4%)
Query: 123 LSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIV 182
+ NF +GR+++ V ++CLY+ACR + + IDFSS L+VSVY +G+ +L+L + L +V
Sbjct: 1 MDQNFTKGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCEMLYLV 60
Query: 183 K----LPLADPSLFIQHFAEKLELG--DKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXX 236
+ L DPS+FI F L G K V A + +M RDW+ GR+P
Sbjct: 61 QNKNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICG 120
Query: 237 XXXXXXXRMNNLRRTHSEIVAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEG 296
+ + + ++I + H+ E T+ +RLNEF NT + L++ R +
Sbjct: 121 AAIYMAALSHGIMYSRADIAKVVHMCEATITKRLNEFANTEAGSLTLLVGR---ILLLIS 177
Query: 297 ERSAESKPPSFDKNRLKEKKIKDSLDTKEMLETSEEAVSRN 337
E+ +K +E D + ++E S+ AV+ +
Sbjct: 178 EQRKREWKKQLEKKTREELAANCPEDARNLVEASKAAVANS 218
>Hs22035558 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 473
Score = 105 bits (263), Expect = 1e-22
Identities = 99/374 (26%), Positives = 161/374 (42%), Gaps = 68/374 (18%)
Query: 213 AVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRTHSEIVAISHVAEETLQQRLNE 272
A++L Q M RDWM+ GRRP RM++ RRT E++++ V E TL++RL E
Sbjct: 3 ALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTE 62
Query: 273 FKNTTSAKLSVKEFRDDETEVNEGERSAESKPPSFD--KNRLKEKKIKDSLDTKEMLETS 330
F++T +++L++ EF + E E PPS+ + +L+ K+++ L +K++ E
Sbjct: 63 FEDTPTSQLTIDEFMKIDLE-------EECDPPSYTAGQRKLRMKQLEQVL-SKKLEEVE 114
Query: 331 EEAVSRNPILTQVLGAQELSSKEVLYYLKK----------LSERRKAEFSRIKATHGIDG 380
E S + L +K L L K L E ++A
Sbjct: 115 GEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLN 174
Query: 381 EDLHKTEKDKKRSLDEIDGYSLE---KDPYRPRNLHLLPTTASL---------LSKVSDH 428
+DL++ E G S E + P L LPT ASL +S S
Sbjct: 175 KDLYRELLGGAPGSSEAAG-SPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSD 233
Query: 429 PEN--------LDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESK--RLKQEAD 478
P++ L +DD E+D ++L+E +++K +W+ N +YL EQ K R+ +E +
Sbjct: 234 PKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKE 293
Query: 479 LASGNTSLRKKRSKRTNRNQSSASIVKVQVDGLPLXXXXXXXXXXXXXXXGGVKNLLQKT 538
L KK KR Q+S + ++ +L++
Sbjct: 294 LGIYKEHKPKKSCKRREPIQASTA-------------------------REAIEKMLEQK 328
Query: 539 TFSKKINYDAINGL 552
S KINY + GL
Sbjct: 329 KISSKINYSVLRGL 342
>7300246 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 495
Score = 103 bits (257), Expect = 7e-22
Identities = 98/377 (25%), Positives = 164/377 (42%), Gaps = 56/377 (14%)
Query: 196 FAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRTHSEI 255
FA +L+LG K +V A+++ Q M +D M+ GRRP RM++ RT ++
Sbjct: 3 FANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDV 62
Query: 256 VAISHVAEETLQQRLNEFKNTTSAKLSVKEFRDDETEVNEGERSAESKPPSFDKNRLKEK 315
+ + + E TL++RL+EF T S L+++EF + E E PPSF R K++
Sbjct: 63 IGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLE-------REQDPPSFKAARKKDR 115
Query: 316 KIKDSLDTKEMLETSEEAVSR---------NPILTQVLGAQELSSKEVLYYLKKLSERR- 365
+ + E+ E +E + N + Q+ + LS SE+
Sbjct: 116 ERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLSSPSTPNSSSEKDI 175
Query: 366 KAEFSR--IKATHGIDGEDLHKTEKDKKRSLDEIDGYSLEKDPYRPRNLHLLPTTASLLS 423
+ E SR I+ ++ ++L +D K+S E G + RP + T S L
Sbjct: 176 ELEESRQFIEQSNAEVIKELIAKNEDVKKS--EPGGLVAGIEGLRPDIEAICRVTQSDLE 233
Query: 424 KV--SDHPEN----LDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESK--RLKQ 475
V + P+ DD++D ELD ++L EE S K +W ++N +YL EQ+ + RL +
Sbjct: 234 DVEKAKQPQEQELITDDLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDERLAK 293
Query: 476 EADLASGNTSLRKKRSKRTNRNQSSASIVKVQVDGLPLXXXXXXXXXXXXXXXGGVKNLL 535
E + RK R K + ++ ++ +L
Sbjct: 294 EREEGKPERKKRKPRKKVIGPSSTAGE---------------------------AIEKML 326
Query: 536 QKTTFSKKINYDAINGL 552
Q+ S KINY+ + L
Sbjct: 327 QEKKISSKINYEILKTL 343
>At1g30450_2 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 356
Score = 89.0 bits (219), Expect = 2e-17
Identities = 89/354 (25%), Positives = 145/354 (40%), Gaps = 58/354 (16%)
Query: 153 MLIDFSSRLQVSVYSIGATFLKLAKKLQIVKLP----LADPSLFIQHFAEKLELGDKKIK 208
+LI FSS +VSVY +G+ +L+L L + + L DPS FI F+ KL G +
Sbjct: 7 LLIHFSSYFRVSVYELGSVYLQLCDMLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQ 66
Query: 209 VIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRTHSEIVAISHVAEETLQQ 268
V+ A + +M +WM GR+P + ++ + ++I I ++ E TL +
Sbjct: 67 VVETATHIIASMKSNWMQTGRKPSGICGAALYTAALSHGIKCSKTDITNIVYICEATLTK 126
Query: 269 RLNEFKNTTSAKLSVKEFRDDETEVNEGERSAE-------------------SKPPSFDK 309
RL EF NT +A + E E E E ER E S PPSF +
Sbjct: 127 RLIEFGNTEAASFTADELSKPERE-REKEREEERELRTRNPNSYKKGLVLCGSDPPSFQR 185
Query: 310 NRLKEKKIKDSLDTKEMLETSEEAVSRNPILTQVLGAQELSSKEVLYYLKKLSERRKAEF 369
+ + K S + + + S+E+ + +L E+ Y + E E
Sbjct: 186 AEKERMEEKASTEENDKQQNSDESST----------LSDLDDGELDCYFRNPKEVHLVEI 235
Query: 370 SRIKATHGIDGEDLHKTEKDKKRSLDEIDGYSLEKDPYRPRNLHLLPTTASLLSKVSDHP 429
D E+ EK+ +L+ + S NL A+ S+
Sbjct: 236 I-------FDHENPGYDEKE-AAALNACNNAS---------NLFEASKAAAAKSRKDKRQ 278
Query: 430 ENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIE-------QESKRLKQE 476
+ ++ +A + ++ S +K + + D N DYL E + SKRLK E
Sbjct: 279 QRAEEEKNAPPPATAMEAVDSMVKRKKFPDTNCDYLEELLDTSAQKASKRLKTE 332
>Hs22035560 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 134
Score = 72.0 bits (175), Expect = 2e-12
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 213 AVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRTHSEIVAISHVAEETLQQRLNE 272
A++L Q M RDWM+ GRRP RM++ RRT E++++ V E TL++RL E
Sbjct: 3 ALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTE 62
Query: 273 FKNTTSAKLSVKEFRDDETE------VNEGERSAESKPP 305
F++T +++L++ EF + E + EG ++ +PP
Sbjct: 63 FEDTPTSQLTIDEFMKIDLEEECDPPIEEGGQTEAREPP 101
>SPAC16E8.16 [K] KOG1597 Transcription initiation factor TFIIB
Length = 340
Score = 66.2 bits (160), Expect = 1e-10
Identities = 55/276 (19%), Positives = 111/276 (39%), Gaps = 38/276 (13%)
Query: 27 TTNELICKVCGLVTEENSIVSEVTFGEASNG---------AAVIQGAFVSANQAHPTFMS 77
++ + +C CGLV + I + + SN + ++ +Q T S
Sbjct: 35 SSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVANPLLNGSQLDTTISS 94
Query: 78 HSGQNALMSR----------ETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLALSNNF 127
+ G A++++ E L A +++ A+ A+++P+ + D A Q Y+ +
Sbjct: 95 YDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKA 154
Query: 128 VQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKL-------- 179
++G+ SQ++IAAC+YIACR+ + ++ + V IG + L + L
Sbjct: 155 LKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTNVPKKEIGRVYKTLQRMLTEGGALHN 214
Query: 180 --------QIVKLPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRP 231
+ ++ + F +L L + V A +LA+ GR P
Sbjct: 215 SVDALKGHEYIQSSSTSAEDLMVRFCNRLML---PMSVQSAAAELARRAGLQGTLAGRSP 271
Query: 232 XXXXXXXXXXXXRMNNLRRTHSEIVAISHVAEETLQ 267
+ +T EI ++ V++ T++
Sbjct: 272 ISIAASGIYMISALMGYPKTPKEISEVTGVSDSTIR 307
>Hs22035562 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 419
Score = 65.1 bits (157), Expect = 3e-10
Identities = 50/234 (21%), Positives = 101/234 (42%), Gaps = 30/234 (12%)
Query: 11 KCKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQ 70
+C +CGST+ V D + ++L+C CG V E V TF + N V
Sbjct: 6 RCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEG--VLTTTFSDEGNLREV---------- 53
Query: 71 AHPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQG 130
T+ +G+N +SR + R+++ + L +P D A +Y+ A ++ ++
Sbjct: 54 ---TYSRSTGENEQVSR--SQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRA 108
Query: 131 ---RKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKL-------- 179
+K + ++ C+ I CR+ + + L + +T++++ K L
Sbjct: 109 ARLQKKEVLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLC 168
Query: 180 --QIVKLPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRP 231
++VK + LF + + + K K++ ++L + + W+ GR P
Sbjct: 169 LAELVKTYCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHP 222
>CE27396 [K] KOG1597 Transcription initiation factor TFIIB
Length = 306
Score = 64.7 bits (156), Expect = 4e-10
Identities = 61/259 (23%), Positives = 110/259 (41%), Gaps = 24/259 (9%)
Query: 30 ELICKVCGLV---------TEENSIVSEVTFGEASNGAA----VIQGAFVSANQAHPTFM 76
+L+C CGLV TE S +E + + S A ++ G +S A
Sbjct: 23 DLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAVGFGG 82
Query: 77 SHSGQNALMSRETTLNNARRKLKA-------VSYALNIPEYVTDAAFQWYRLALSNNFVQ 129
S S + ++ ++NN R++ A +S +++P + D+A + ++ L + ++
Sbjct: 83 SDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALR 142
Query: 130 GRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVKLPLADP 189
G+ ++ AACLYIACRK+ + + +VS IG F + + L+ L
Sbjct: 143 GKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIVRSLE-TNLEQITS 201
Query: 190 SLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLR 249
+ F+ F L L + K A M + GR P + + +
Sbjct: 202 ADFMSRFCGNLSLPNSIQAAATRIAKCAVDMD---LVAGRTPISIAAAAIYMASQASAEK 258
Query: 250 RTHSEIVAISHVAEETLQQ 268
R+ EI ++ AE T++Q
Sbjct: 259 RSAKEIGDVAGAAEITVRQ 277
>7297699 [K] KOG1597 Transcription initiation factor TFIIB
Length = 315
Score = 64.3 bits (155), Expect = 5e-10
Identities = 72/311 (23%), Positives = 134/311 (42%), Gaps = 31/311 (9%)
Query: 1 MASTLQVSSRK--CKNCGSTDFVRDISNTTNELICKVCGLVTEEN--SIVSEV-TFGEAS 55
MAST ++ + K C + + D ++IC CGLV + + SE TF
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYR--AGDMICSECGLVVGDRVIDVGSEWRTFSNEK 58
Query: 56 NGA----------AVIQGAFVSA-------NQAHPTFMSHSGQN--ALMSRETTLNNARR 96
+G ++ G +S + + F + QN + S + +L +A +
Sbjct: 59 SGVDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFK 118
Query: 97 KLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLID 156
++ +++ +N+P+ + D A ++ ++GR + +ACLYIACR+E +
Sbjct: 119 EISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKE 178
Query: 157 FSSRLQVSVYSIGATFLKLAKKLQIVKLPLADPSLFIQHFAEKLELGDKKIKVIRDAVKL 216
+ ++S IG F KL K + L + F+ F L+L + V R A +
Sbjct: 179 ICAVSKISKKEIGRCF-KLTLKALETSVDLITTADFMCRFCANLDLPN---MVQRAATHI 234
Query: 217 AQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRTHSEIVAISHVAEETLQQRLNEFKNT 276
A+ + GR P + + +R+ EI I+ VA+ T++Q +
Sbjct: 235 AKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSY-KLMYP 293
Query: 277 TSAKLSVKEFR 287
+AKL ++F+
Sbjct: 294 HAAKLFPEDFK 304
>HsM8922844 [K] KOG1598 Transcription initiation factor TFIIIB Brf1 subunit
Length = 419
Score = 63.2 bits (152), Expect = 1e-09
Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 30/234 (12%)
Query: 11 KCKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQ 70
+C +CGST+ V D + ++L+C CG V E V TF + N V
Sbjct: 6 RCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEG--VLTTTFSDEGNLREV---------- 53
Query: 71 AHPTFMSHSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQG 130
T+ +G+N +SR + R+++ + L +P D A +Y+ A ++ ++
Sbjct: 54 ---TYSRSTGENEQVSR--SQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRA 108
Query: 131 ---RKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKL-------- 179
+K + ++ C+ I CR+ + + L + +T +++ K L
Sbjct: 109 ARLQKKEVLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTCMQIVKLLGLDVPSLC 168
Query: 180 --QIVKLPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGRRP 231
++VK + LF + + + K K++ ++L + + W+ GR P
Sbjct: 169 LAELVKTYCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHP 222
>Hs4504193 [K] KOG1597 Transcription initiation factor TFIIB
Length = 316
Score = 62.4 bits (150), Expect = 2e-09
Identities = 66/293 (22%), Positives = 118/293 (39%), Gaps = 31/293 (10%)
Query: 1 MASTLQVSSRK---CKNCGSTDFVRDISNTTNELICKVCGLVTEENSIVSEVTFGEASNG 57
MAST ++ + C N V D ++IC CGLV + I + SN
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYR--AGDMICPECGLVVGDRVIDVGSEWRTFSND 58
Query: 58 AAVIQGAFVSANQ--------------------AHPTFMSHSGQN--ALMSRETTLNNAR 95
A + V +Q + F + QN + S + + NA
Sbjct: 59 KATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAF 118
Query: 96 RKLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
+++ ++ +N+P + D ++ ++GR + + +ACLYIACR+E
Sbjct: 119 KEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK 178
Query: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVKLPLADPSLFIQHFAEKLELGDKKIKVIRDAVK 215
+ + ++S IG F + K L+ + L F+ F L L K++++ A
Sbjct: 179 EICAVSRISKKEIGRCFKLILKALE-TSVDLITTGDFMSRFCSNLCL-PKQVQMA--ATH 234
Query: 216 LAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRTHSEIVAISHVAEETLQQ 268
+A+ + GR P + + +RT EI I+ VA+ T++Q
Sbjct: 235 IARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQ 287
>ECU06g1100i [K] KOG1597 Transcription initiation factor TFIIB
Length = 312
Score = 55.1 bits (131), Expect = 3e-07
Identities = 58/284 (20%), Positives = 115/284 (40%), Gaps = 33/284 (11%)
Query: 12 CKNCGST-DFVRDISNTTNELICKVCGLVTEENSIVSEVT----FGEASN------GAAV 60
C +CG T + V D N + +C CG + N I+ E + FG+++ G+A
Sbjct: 14 CSDCGETQNIVEDYKNGYH--VCGRCGCIVG-NRIIDEGSEWRSFGDSNKVDPCRIGSA- 69
Query: 61 IQGAFVSANQAHPTFMSHSGQNA-LMSRETTLNNARRKLKAVSYALNI----------PE 109
++ + Q + G N+ ++S+ N+ R +A+ + +N+
Sbjct: 70 -SNPYLESEQLDTMISTGGGMNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLSR 128
Query: 110 YVTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIG 169
+ D A ++ ++G+ + ++AAC+YIACR+E + S V IG
Sbjct: 129 TIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKREIG 188
Query: 170 ATFLKLAKKLQIVKLPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYEGR 229
F ++ L+ ++ I F L L IK+ + A ++A+ G+
Sbjct: 189 RCFKLISPHLE--RMATMSTENIIARFCSDLNL---NIKIQKIATEIAKAAHELGCLAGK 243
Query: 230 RPXXXXXXXXXXXXRM-NNLRRTHSEIVAISHVAEETLQQRLNE 272
P + ++ +I +++V E T++ E
Sbjct: 244 SPDSIAAAVIYMVTNLFPEEKKIQKDIQFVTNVTEVTIKNTYKE 287
>At2g41630 [K] KOG1597 Transcription initiation factor TFIIB
Length = 312
Score = 54.7 bits (130), Expect = 4e-07
Identities = 69/303 (22%), Positives = 125/303 (40%), Gaps = 50/303 (16%)
Query: 7 VSSRKCKNCGS-TDFVRDISNTTNELICKVCGLVTEENSI--VSEV-TFGEASNGA---- 58
+S C +C T+ V D ++ + +C CGLV E +SI SE TF S+ +
Sbjct: 1 MSDAYCTDCKKETELVVD--HSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNR 58
Query: 59 -----------AVIQGAFVSANQAHPTFMSHS---GQNALMSRETTLNNARRKLKAVSYA 104
+ + N + F+S S QN + + L A + + +S
Sbjct: 59 VGGPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSER 118
Query: 105 LNIPEYVTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVS 164
L + + D A + Y+ +GR + AACLYIACR+E + ++
Sbjct: 119 LGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTI------KEIC 172
Query: 165 VYSIGATFLKLAK-KLQIVKLPLADPSL-----------FIQHFAEKLELGDKKIKVIRD 212
V + GAT ++ + K IVK +P F++ F L + + +K ++
Sbjct: 173 VIANGATKKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQE 232
Query: 213 AVKLAQTMSRDWMYEGRRPXXXXXXXXXXXXRMNNLRRTHSEIVAISHVAEETLQQRLNE 272
AV+ ++ R P ++++ ++T +I + VAE T++ N
Sbjct: 233 AVQKSEEFD-----IRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIR---NS 284
Query: 273 FKN 275
+K+
Sbjct: 285 YKD 287
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.129 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,906,916
Number of Sequences: 60738
Number of extensions: 1163292
Number of successful extensions: 4441
Number of sequences better than 1.0e-05: 22
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4376
Number of HSP's gapped (non-prelim): 30
length of query: 556
length of database: 30,389,216
effective HSP length: 111
effective length of query: 445
effective length of database: 23,647,298
effective search space: 10523047610
effective search space used: 10523047610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)