ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1558 check: MH J KOG0327 Translation, ribosomal structure and biogenesis Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1558 536243 537430 396
(396 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 620 e-178
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 620 e-178
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 504 e-142
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 486 e-137
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 485 e-137
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 469 e-132
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 465 e-131
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 461 e-129
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 457 e-129
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 455 e-128
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 453 e-127
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 444 e-124
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 439 e-123
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 438 e-123
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 436 e-122
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 405 e-113
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 404 e-112
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 392 e-109
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 319 5e-87
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 297 2e-80
YDL160c [A] KOG0326 ATP-dependent RNA helicase 276 4e-74
CE00839 [A] KOG0326 ATP-dependent RNA helicase 268 8e-72
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 263 4e-70
7297629 [A] KOG0326 ATP-dependent RNA helicase 261 1e-69
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 260 3e-69
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 259 4e-69
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 257 2e-68
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 247 2e-65
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 243 4e-64
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 239 4e-63
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 228 2e-59
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 228 2e-59
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 227 2e-59
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 226 5e-59
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 226 5e-59
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 223 3e-58
YOR046c [A] KOG0332 ATP-dependent RNA helicase 223 4e-58
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 223 5e-58
7296990 [A] KOG0329 ATP-dependent RNA helicase 221 2e-57
CE03025 [A] KOG0329 ATP-dependent RNA helicase 214 1e-55
YDL084w [A] KOG0329 ATP-dependent RNA helicase 210 3e-54
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 208 1e-53
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 207 2e-53
Hs14251212 [K] KOG4284 DEAD box protein 205 1e-52
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 202 5e-52
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 202 7e-52
7295314 [A] KOG0331 ATP-dependent RNA helicase 199 6e-51
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 199 8e-51
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 199 8e-51
CE18785 [A] KOG0331 ATP-dependent RNA helicase 197 2e-50
7290853 [A] KOG0331 ATP-dependent RNA helicase 197 3e-50
7299061 [A] KOG0335 ATP-dependent RNA helicase 196 5e-50
YNL112w [A] KOG0331 ATP-dependent RNA helicase 194 1e-49
CE18221 [A] KOG0332 ATP-dependent RNA helicase 194 1e-49
CE18220 [A] KOG0332 ATP-dependent RNA helicase 194 1e-49
CE18219 [A] KOG0332 ATP-dependent RNA helicase 194 1e-49
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 191 2e-48
CE00337 [A] KOG0330 ATP-dependent RNA helicase 190 4e-48
7298989 [A] KOG0336 ATP-dependent RNA helicase 190 4e-48
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 189 5e-48
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 187 3e-47
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 186 5e-47
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 186 5e-47
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 186 7e-47
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 184 2e-46
YOR204w [A] KOG0335 ATP-dependent RNA helicase 184 3e-46
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 184 3e-46
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 183 3e-46
7296646 [A] KOG0331 ATP-dependent RNA helicase 183 3e-46
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 182 6e-46
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 182 8e-46
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 181 1e-45
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 181 2e-45
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 181 2e-45
7294824 [K] KOG4284 DEAD box protein 181 2e-45
7298204 [A] KOG0335 ATP-dependent RNA helicase 180 4e-45
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 178 1e-44
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 176 4e-44
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 176 5e-44
YPL119c [A] KOG0335 ATP-dependent RNA helicase 176 7e-44
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 176 7e-44
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 176 7e-44
SPCC10H11.01 [A] KOG0334 RNA helicase 175 9e-44
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 175 9e-44
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 174 2e-43
Hs7662318 [A] KOG0334 RNA helicase 174 2e-43
CE28031 [A] KOG0334 RNA helicase 174 2e-43
CE27427 [A] KOG0334 RNA helicase 174 2e-43
7298752 [A] KOG0330 ATP-dependent RNA helicase 174 3e-43
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 173 4e-43
YLL008w [A] KOG0338 ATP-dependent RNA helicase 172 6e-43
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 172 6e-43
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 172 6e-43
CE27030 [A] KOG0338 ATP-dependent RNA helicase 172 1e-42
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 171 1e-42
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 171 2e-42
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 171 2e-42
7293060 [A] KOG0334 RNA helicase 171 2e-42
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 171 2e-42
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 170 3e-42
7294797 [A] KOG0339 ATP-dependent RNA helicase 170 4e-42
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 169 5e-42
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 169 5e-42
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 169 5e-42
CE28369 [A] KOG0335 ATP-dependent RNA helicase 169 5e-42
CE24451 [A] KOG0335 ATP-dependent RNA helicase 169 5e-42
YGL078c [A] KOG0331 ATP-dependent RNA helicase 169 7e-42
CE28485 [K] KOG4284 DEAD box protein 169 7e-42
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 168 1e-41
YHR065c [A] KOG0330 ATP-dependent RNA helicase 167 2e-41
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 167 3e-41
7296891 [A] KOG0341 DEAD-box protein abstrakt 167 3e-41
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 166 6e-41
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 165 1e-40
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 165 1e-40
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 2e-40
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 2e-40
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 164 2e-40
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 162 6e-40
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 162 6e-40
YHR169w [A] KOG0340 ATP-dependent RNA helicase 161 2e-39
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 160 4e-39
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 159 5e-39
CE23832 [A] KOG0341 DEAD-box protein abstrakt 159 7e-39
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 159 7e-39
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 158 2e-38
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 157 3e-38
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 156 4e-38
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 156 6e-38
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 156 6e-38
At1g20920 [A] KOG0334 RNA helicase 155 8e-38
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 155 8e-38
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 155 1e-37
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 155 1e-37
7304081 [A] KOG0338 ATP-dependent RNA helicase 155 1e-37
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 154 3e-37
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 154 3e-37
CE17559 [A] KOG0339 ATP-dependent RNA helicase 154 3e-37
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 152 8e-37
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 152 1e-36
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 152 1e-36
ECU10g1680 [A] KOG0343 RNA Helicase 151 1e-36
CE22474 [A] KOG0336 ATP-dependent RNA helicase 151 1e-36
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 151 2e-36
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 150 3e-36
7303950 [A] KOG0340 ATP-dependent RNA helicase 150 3e-36
CE27553 [A] KOG0337 ATP-dependent RNA helicase 150 4e-36
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 149 5e-36
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 149 7e-36
CE25231 [A] KOG0343 RNA Helicase 149 7e-36
YBR237w [A] KOG0334 RNA helicase 149 9e-36
CE23814 [A] KOG0340 ATP-dependent RNA helicase 148 1e-35
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 148 1e-35
YGL171w [A] KOG0344 ATP-dependent RNA helicase 148 2e-35
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 148 2e-35
YJL033w [A] KOG0343 RNA Helicase 147 2e-35
Hs9506931 [A] KOG0346 RNA helicase 145 1e-34
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 2e-34
7293941 [A] KOG0344 ATP-dependent RNA helicase 143 4e-34
7299006 [A] KOG0345 ATP-dependent RNA helicase 142 1e-33
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 141 1e-33
CE25121 [A] KOG0335 ATP-dependent RNA helicase 140 3e-33
CE09012 [A] KOG0335 ATP-dependent RNA helicase 140 3e-33
CE07736 [A] KOG0335 ATP-dependent RNA helicase 140 4e-33
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 140 4e-33
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 138 1e-32
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 138 1e-32
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 138 2e-32
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 135 8e-32
Hs13514831 [A] KOG0343 RNA Helicase 135 8e-32
7293369 [A] KOG0343 RNA Helicase 135 1e-31
SPAC1093.05 [A] KOG0343 RNA Helicase 135 1e-31
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 134 2e-31
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 133 4e-31
At3g16840 [A] KOG0347 RNA helicase 132 7e-31
CE27728 [A] KOG0346 RNA helicase 131 2e-30
At3g09620 [A] KOG0334 RNA helicase 131 2e-30
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 129 8e-30
At4g34910 [A] KOG0346 RNA helicase 129 1e-29
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 127 4e-29
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 127 4e-29
YFL002c [A] KOG0345 ATP-dependent RNA helicase 126 5e-29
YDL031w [A] KOG0337 ATP-dependent RNA helicase 126 6e-29
CE11402 [A] KOG0334 RNA helicase 125 1e-28
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 124 2e-28
7293348 [A] KOG0348 ATP-dependent RNA helicase 120 4e-27
7295505 [A] KOG0346 RNA helicase 120 5e-27
At5g54910 [A] KOG0343 RNA Helicase 116 5e-26
CE27336 [A] KOG0334 RNA helicase 116 7e-26
YLR276c [A] KOG0346 RNA helicase 115 9e-26
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 115 9e-26
CE29052 [A] KOG0335 ATP-dependent RNA helicase 115 9e-26
Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FA... 115 1e-25
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 114 2e-25
SPBC4F6.07c [A] KOG0347 RNA helicase 114 2e-25
SPCC1494.06c [A] KOG0346 RNA helicase 114 3e-25
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 114 3e-25
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 113 4e-25
7290730 [A] KOG0331 ATP-dependent RNA helicase 113 6e-25
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 112 7e-25
7302399 [A] KOG0347 RNA helicase 112 1e-24
YBR142w [A] KOG0347 RNA helicase 112 1e-24
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 110 3e-24
CE06239 [A] KOG0344 ATP-dependent RNA helicase 110 4e-24
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 110 4e-24
CE03821 [A] KOG0345 ATP-dependent RNA helicase 109 6e-24
CE26264 [A] KOG0335 ATP-dependent RNA helicase 109 8e-24
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 109 8e-24
CE11190 [A] KOG0347 RNA helicase 108 1e-23
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 107 4e-23
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 106 7e-23
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 105 9e-23
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 105 9e-23
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 103 3e-22
Hs9966805 [A] KOG0347 RNA helicase 99 8e-21
7296165 [A] KOG0330 ATP-dependent RNA helicase 99 8e-21
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 98 2e-20
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 97 3e-20
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 97 5e-20
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 96 7e-20
CE29051 [A] KOG0335 ATP-dependent RNA helicase 93 6e-19
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 92 1e-18
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 92 1e-18
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 90 7e-18
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 90 7e-18
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 89 1e-17
YKR024c [A] KOG0348 ATP-dependent RNA helicase 86 1e-16
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 85 2e-16
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 82 1e-15
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 82 1e-15
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 82 1e-15
Hs17459025 [J] KOG0327 Translation initiation factor 4F helicase... 74 3e-13
ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase 66 1e-10
YGL064c [A] KOG0335 ATP-dependent RNA helicase 60 6e-09
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 55 2e-07
SPAC2G11.12 [L] KOG0351 ATP-dependent DNA helicase 54 3e-07
SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase 54 3e-07
7299503 [L] KOG0351 ATP-dependent DNA helicase 54 4e-07
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 54 5e-07
CE27320 [A] KOG0335 ATP-dependent RNA helicase 54 5e-07
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 53 7e-07
Hs22045464 [A] KOG0343 RNA Helicase 53 9e-07
At1g27880 [L] KOG0351 ATP-dependent DNA helicase 53 9e-07
Hs4557365 [L] KOG0351 ATP-dependent DNA helicase 52 2e-06
Hs20482355 [J] KOG0327 Translation initiation factor 4F helicase... 51 3e-06
Hs5739524_2 [L] KOG0351 ATP-dependent DNA helicase 51 3e-06
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 620 bits (1600), Expect = e-178
Identities = 318/396 (80%), Positives = 349/396 (87%), Gaps = 1/396 (0%)
Query: 1 MSDGITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGK 60
MS+GITDI+E+QIQ+ YDKVVY FDD++L E LLRG+FGYGF EPSAIQQRAI+PIIEG
Sbjct: 1 MSEGITDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH 60
Query: 61 DVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVK 120
DVLAQAQSGTGKTGTFSIAALQ ID +KAPQ L+LAPTRELALQIQKVVMALA HMD+K
Sbjct: 61 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIK 120
Query: 121 VHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTG 180
VHACIGGTS ED+E LR AQI+VGTPGRVFD I RR F+TD IKMFILDEADEMLS+G
Sbjct: 121 VHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 179
Query: 181 FKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYV 240
FKEQIY IFT+LPPT+QVVLLSATMP DVLEVT+KFM++PVRILVKKDELTLEGI Q+YV
Sbjct: 180 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYV 239
Query: 241 NVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQER 300
NVEEE+YKY+CLTDLYDSISVTQAVIFCNTRRKVEELT +LR + FTVSAIYSDL QQER
Sbjct: 240 NVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQER 299
Query: 301 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXX 360
DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP+NKENY
Sbjct: 300 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 359
Query: 361 XXNFVTNKDIGAMRELERFYSTQIEELPSSISELFD 396
NFVTN+D+GAMRELE+FYSTQIEELPS I+ L +
Sbjct: 360 AINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN 395
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 620 bits (1600), Expect = e-178
Identities = 318/396 (80%), Positives = 349/396 (87%), Gaps = 1/396 (0%)
Query: 1 MSDGITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGK 60
MS+GITDI+E+QIQ+ YDKVVY FDD++L E LLRG+FGYGF EPSAIQQRAI+PIIEG
Sbjct: 1 MSEGITDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH 60
Query: 61 DVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVK 120
DVLAQAQSGTGKTGTFSIAALQ ID +KAPQ L+LAPTRELALQIQKVVMALA HMD+K
Sbjct: 61 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIK 120
Query: 121 VHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTG 180
VHACIGGTS ED+E LR AQI+VGTPGRVFD I RR F+TD IKMFILDEADEMLS+G
Sbjct: 121 VHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 179
Query: 181 FKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYV 240
FKEQIY IFT+LPPT+QVVLLSATMP DVLEVT+KFM++PVRILVKKDELTLEGI Q+YV
Sbjct: 180 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYV 239
Query: 241 NVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQER 300
NVEEE+YKY+CLTDLYDSISVTQAVIFCNTRRKVEELT +LR + FTVSAIYSDL QQER
Sbjct: 240 NVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQER 299
Query: 301 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXX 360
DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP+NKENY
Sbjct: 300 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 359
Query: 361 XXNFVTNKDIGAMRELERFYSTQIEELPSSISELFD 396
NFVTN+D+GAMRELE+FYSTQIEELPS I+ L +
Sbjct: 360 AINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN 395
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 504 bits (1297), Expect = e-142
Identities = 251/390 (64%), Positives = 316/390 (80%)
Query: 5 ITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLA 64
+ ++++ I++ YD+V+ +FDD+ LK ELLRGI+ YGF PSAIQQRAI+PI+ +DVLA
Sbjct: 2 VDQLEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLA 61
Query: 65 QAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHAC 124
QAQSGTGKT TFSI+ LQ ID +K Q LILAPTRELA QIQKVV+AL M+V+ HAC
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHAC 121
Query: 125 IGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQ 184
IGGT +++D AL+ G ++VGTPGRV DMI RR TD ++MF+LDEADEMLS GFK+Q
Sbjct: 122 IGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQ 181
Query: 185 IYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEE 244
IY+IF +LPPT+QVVLLSATMP DVLEVT+KFM+DP+RILVKKDELTLEGI Q+YV VE+
Sbjct: 182 IYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEK 241
Query: 245 EQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIM 304
E++K D L DLY++++VTQAVIFCNTRRKV+ LTE+L E +FTVS+++ D+ Q +RDT+M
Sbjct: 242 EEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLM 301
Query: 305 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNF 364
EFR+GSSRILI+TDLLARGIDVQQVSLVINYDLP+N+ENY NF
Sbjct: 302 HEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINF 361
Query: 365 VTNKDIGAMRELERFYSTQIEELPSSISEL 394
VTN D+ MRE+E+FY+T IEE+P +I++L
Sbjct: 362 VTNDDVRMMREIEQFYNTHIEEMPMNIADL 391
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 486 bits (1252), Expect = e-137
Identities = 239/385 (62%), Positives = 310/385 (80%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
E I+ST+ +V +FDD+ L+EELLRGI+GYGF +PSAIQQRAI+P + G+DV+AQAQSG
Sbjct: 4 EGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSG 63
Query: 70 TGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTS 129
TGKT TFSIA LQ ID I+ Q LILAPTRELA QIQ+VVMAL +M V HACIGGT+
Sbjct: 64 TGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTN 123
Query: 130 LQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF 189
++ED+ L G ++VGTPGRV+DMI+R++ +T IK+F+LDEADEMLS GFK+QI ++F
Sbjct: 124 VREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVF 183
Query: 190 TMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY 249
MLPP QV+LLSATMP DVLEV+ FM+DPV ILVKK+ELTLEGI Q+YVNV++E +K
Sbjct: 184 KMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKL 243
Query: 250 DCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRS 309
L DLYD++S+TQ+VIFCNTRRKV++LT+ + +NFTVSA++ D++Q++R+ IMK+FRS
Sbjct: 244 GTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRS 303
Query: 310 GSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKD 369
GSSR+LI+TDLLARGIDVQQVSLVINYDLPSN+ENY NF+T+ D
Sbjct: 304 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDD 363
Query: 370 IGAMRELERFYSTQIEELPSSISEL 394
++++E+FY T IEE+P++I++L
Sbjct: 364 RRILKDIEQFYHTTIEEMPANIADL 388
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 485 bits (1248), Expect = e-137
Identities = 236/382 (61%), Positives = 303/382 (78%)
Query: 13 IQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGK 72
I+ YD+VV SFDD++LKEELLRGI+G+GF +PSAIQ+RAI+P GKDV+AQAQSGTGK
Sbjct: 20 IEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGK 79
Query: 73 TGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQE 132
T TFS++ LQ ID + Q L++APTRELA QIQKV+ AL +++V + CIGGTS+++
Sbjct: 80 TATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRD 139
Query: 133 DSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTML 192
D L G ++VGTPGRV DMI+R T IKMF+LDEADEMLS GFK+QIY +F +
Sbjct: 140 DQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSM 199
Query: 193 PPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCL 252
P QVVLLSATMP +VL+VT++FM++P+RILVKKDELTLEGI Q+Y+NV+++++K+DCL
Sbjct: 200 PQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCL 259
Query: 253 TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
DLY+ ++VTQAVIFCNTRRKV+ LTE++ EN FTVS ++ D+ Q ERDTIM+EFRSGSS
Sbjct: 260 CDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSS 319
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGA 372
R+LI+TD+LARGIDVQQVSLVINYDLPSN+ENY NFVT D
Sbjct: 320 RVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQ 379
Query: 373 MRELERFYSTQIEELPSSISEL 394
++E+E +Y+TQIEE+P SI++L
Sbjct: 380 LKEIESYYTTQIEEMPESIADL 401
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 469 bits (1207), Expect = e-132
Identities = 239/386 (61%), Positives = 302/386 (77%), Gaps = 1/386 (0%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
E I+S ++++V SFDD+ L E LLRGI+ YGF +PSAIQQRAILP I+G DV+AQAQSG
Sbjct: 20 EGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG 79
Query: 70 TGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTS 129
TGKT TF+I+ LQ I+ +KA Q L+LAPTRELA QIQKVVMAL +M HACIGGT+
Sbjct: 80 TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 139
Query: 130 LQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNI 188
++ + + L+ A IIVGTPGRVFDM++RR IKMF+LDEADEMLS GFK+QIY+I
Sbjct: 140 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 199
Query: 189 FTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYK 248
F L +QVVLLSATMP DVLEVT KFM+DP+RILVKK+ELTLEGI Q+Y+NVE E++K
Sbjct: 200 FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK 259
Query: 249 YDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFR 308
D L DLY+++++TQAVIF NTRRKV+ LTE++ +FTVSA++ D+ Q+ERD IM+EFR
Sbjct: 260 LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 309 SGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNK 368
SGSSR+LI+TDLLARGIDVQQVSLVINYDLP+N+ENY N VT +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 369 DIGAMRELERFYSTQIEELPSSISEL 394
D +R++E FY+T IEE+P ++++L
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLNVADL 405
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 465 bits (1196), Expect = e-131
Identities = 228/389 (58%), Positives = 309/389 (78%), Gaps = 1/389 (0%)
Query: 7 DIDENQIQSTYD-KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQ 65
D+ + +++ D +V+ +F+ + LKEELLRGI+ YGF +PSAIQQR+I PI++G+DV+AQ
Sbjct: 10 DLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQ 69
Query: 66 AQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACI 125
AQSGTGKT TFSI+ LQ++D ++ Q L L+PTRELA+QIQKV++AL M+V+ H CI
Sbjct: 70 AQSGTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCI 129
Query: 126 GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQI 185
GGT+L ED L G I+ GTPGRVFDMI RR+ +T IKM +LDEADEML+ GFKEQI
Sbjct: 130 GGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQI 189
Query: 186 YNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEE 245
Y+++ LPP +QVVL+SAT+P ++LE+TSKFM DP+RILVK+DELTLEGI Q++V VE E
Sbjct: 190 YDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVERE 249
Query: 246 QYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMK 305
++K+D L DLYD++++TQAVIFCNT+RKV+ LTE++RE NFTVS+++ D+ Q+ERD IMK
Sbjct: 250 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMK 309
Query: 306 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFV 365
EFR+G SR+LI+TD+ ARGIDVQQVSLVINYDLP+N+E Y NFV
Sbjct: 310 EFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
Query: 366 TNKDIGAMRELERFYSTQIEELPSSISEL 394
+ DI +R++E++YSTQI+E+P ++++L
Sbjct: 370 KSDDIRILRDIEQYYSTQIDEMPMNVADL 398
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 461 bits (1185), Expect = e-129
Identities = 230/383 (60%), Positives = 299/383 (78%), Gaps = 1/383 (0%)
Query: 13 IQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGK 72
I+S ++++V +FDD+ LKE LLRGI+ YGF +PSAIQQRAI+P I+G DV+AQAQSGTGK
Sbjct: 24 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGK 83
Query: 73 TGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQE 132
T TF+I+ LQ ++ + K Q L+LAPTRELA QIQKV++AL +M HACIGGT+++
Sbjct: 84 TATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN 143
Query: 133 DSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTM 191
+ + L+ A I+VGTPGRVFDM++RR IKMF+LDEADEMLS GFK+QIY IF
Sbjct: 144 EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK 203
Query: 192 LPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDC 251
L + QVV SATMP DVLEVT KFM+DP+RILVKK+ELTLEGI Q+Y+NVE E++K D
Sbjct: 204 LNTSIQVVFASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDT 263
Query: 252 LTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGS 311
L DLY+++++TQAVIF NTRRKV+ LTE++ +FTVSA++ D+ Q+ERD IM+EFRSGS
Sbjct: 264 LCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGS 323
Query: 312 SRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIG 371
SR+LI+TDLLARGIDVQQVSLVINYDLP+N+ENY NFVT +D
Sbjct: 324 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKR 383
Query: 372 AMRELERFYSTQIEELPSSISEL 394
+R++E FY+T +EE+P ++++L
Sbjct: 384 ILRDIETFYNTTVEEMPMNVADL 406
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 457 bits (1177), Expect = e-129
Identities = 223/375 (59%), Positives = 301/375 (79%)
Query: 20 VVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIA 79
V +FD + L+E+LLRGI+ YGF +PSAIQQRAI II+G+DV+AQ+QSGTGKT TFSI+
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 95
Query: 80 ALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
LQ +D +++ Q LILAPTRELA+QIQK ++AL +M+V+ HACIGGT++ ED L
Sbjct: 96 VLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199
G ++ GTPGRVFDMI RR +T IKM +LDEADEML+ GFKEQIY+++ LPP +QVV
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
L+SAT+P ++LE+T+KFM DP+RILVK+DELTLEGI Q++V VE E++K+D L DLYD++
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
++TQAVIFCNT+RKV+ LTE++RE NFTVS+++ D+ Q+ER++IMKEFRSG+SR+LISTD
Sbjct: 276 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 335
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
+ ARG+DV QVSL+INYDLP+N+E Y NFV N DI +R++E++
Sbjct: 336 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
Query: 380 YSTQIEELPSSISEL 394
YSTQI+E+P ++++L
Sbjct: 396 YSTQIDEMPMNVADL 410
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 455 bits (1170), Expect = e-128
Identities = 225/390 (57%), Positives = 306/390 (77%), Gaps = 2/390 (0%)
Query: 7 DIDENQIQSTYDKV--VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLA 64
+I EN +T + V V SF+++ LKE+LLRGI+ YG+ PSA+Q RAI+ I +G+DV+A
Sbjct: 4 EIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 65 QAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHAC 124
QAQSGTGKT TFSI LQ+ID ++ Q LIL+PTRELA+QIQ VV+AL HM+V+ HAC
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 125 IGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQ 184
IGGTS+ D + L G ++ GTPGRV DMI RR +T N+KM ILDEADE+L+ GFKEQ
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQ 183
Query: 185 IYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEE 244
IY+I+ LPP +QVV++SAT+P DVLE+T+KF +PVRILVK+DELTLEG+ QY++ VE+
Sbjct: 184 IYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEK 243
Query: 245 EQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIM 304
E++K+D L DLYD++++TQAVIFCN+RRKV+ LTE++RE NFTV++++ ++ Q+ERD IM
Sbjct: 244 EEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIM 303
Query: 305 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNF 364
++FR G+SR+LI TD+ ARGIDVQQVSLVINYDLP+N+ENY NF
Sbjct: 304 QDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINF 363
Query: 365 VTNKDIGAMRELERFYSTQIEELPSSISEL 394
VTN+D+ +R++E++YST I+E+P +I ++
Sbjct: 364 VTNEDVRILRDIEQYYSTVIDEMPMNIGDM 393
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 453 bits (1165), Expect = e-127
Identities = 217/375 (57%), Positives = 302/375 (79%)
Query: 20 VVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIA 79
V+ +FD + L+E+LLRGI+ YGF +PSAIQQRA+ I++ +DV+AQAQSGTGKT TFSI+
Sbjct: 24 VIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSIS 83
Query: 80 ALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
LQ++D +++ Q LIL+PTRELA+QIQKVV+AL +M+V+ HACIGGT+L ED L
Sbjct: 84 VLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 143
Query: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199
G ++ GTPGRVFDMI RR +T IK+ +LDEADEML+ GFKEQ+Y+I+ LPP +QVV
Sbjct: 144 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 203
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
LLSAT+P ++LE+TSKFM DP+RILVK+DELTLEGI Q++V V+ E++K+D L DLYD++
Sbjct: 204 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTL 263
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
++TQAV+FCNTRRKV+ LT++++E NFTVS+++ D++Q++RD +MKEFR+G++R+LISTD
Sbjct: 264 TITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTD 323
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
+ ARG+DV QVSLVINYDLP+N+E Y NFV D+ +R++E++
Sbjct: 324 VWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQY 383
Query: 380 YSTQIEELPSSISEL 394
YSTQI+E+P +I+++
Sbjct: 384 YSTQIDEMPMNIADI 398
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 444 bits (1142), Expect = e-124
Identities = 220/385 (57%), Positives = 290/385 (75%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
+++ ++YD V SFD + L+E LLRGI+ YGF +PSAIQQR I+P +G DV+ QAQSG
Sbjct: 27 QDEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSG 86
Query: 70 TGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTS 129
TGKT TF LQ +D + Q L+LAPTRELA QI+KV+ AL ++ VKVHAC+GGTS
Sbjct: 87 TGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS 146
Query: 130 LQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF 189
++ED L+ G ++VGTPGRVFDM+ R+ + DNIKMF+LDEADEMLS GFK+QIY+IF
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIF 206
Query: 190 TMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY 249
+LPP QV + SATMP + LE+T KFM PVRILVK+DELTLEGI Q+YVNVE+E++K
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKL 266
Query: 250 DCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRS 309
+ L DLY+++++TQ+VIF NTRRKV+ LT+++R + TVSA + D+ Q RD IM+EFRS
Sbjct: 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 326
Query: 310 GSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKD 369
GSSR+LI+TDLLARGIDVQQVSLVIN+DLP+ ENY NFVT D
Sbjct: 327 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386
Query: 370 IGAMRELERFYSTQIEELPSSISEL 394
+ ++++FY+ +EELPS++++L
Sbjct: 387 ERMLFDIQKFYNVVVEELPSNVADL 411
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 439 bits (1129), Expect = e-123
Identities = 210/388 (54%), Positives = 297/388 (76%), Gaps = 2/388 (0%)
Query: 9 DENQIQSTYDKV--VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQA 66
D+ + T D + + SF+D+ +KE++LRG++ YGF +PSAIQQRA++PI++G+DV+AQA
Sbjct: 20 DDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQA 79
Query: 67 QSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIG 126
QSGTGKT +++ Q +D + Q LIL+PTRELA Q +K + A+ +H +++ HACIG
Sbjct: 80 QSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIG 139
Query: 127 GTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIY 186
G S+ ED L G ++ GTPGRV DMI RR +T IK+ ILDE+DEMLS GFK+QIY
Sbjct: 140 GNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIY 199
Query: 187 NIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ 246
+++ LPP QV L+SAT+P ++LE+TSKFM +PV+ILVK+DELTLEGI Q++V VE+E+
Sbjct: 200 DVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEE 259
Query: 247 YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKE 306
+K+D L DLYD++++TQAVIFCNT+RKV+ L+E++R +NFTVS+++ D+ Q+ERD IM E
Sbjct: 260 WKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNE 319
Query: 307 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVT 366
FRSG SR+LI+TD+ ARGIDVQQVSLVINYDLP+N+E Y NFV
Sbjct: 320 FRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 379
Query: 367 NKDIGAMRELERFYSTQIEELPSSISEL 394
+ DI +R++E++YSTQI+E+P ++++L
Sbjct: 380 SDDIKILRDIEQYYSTQIDEMPMNVADL 407
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 438 bits (1127), Expect = e-123
Identities = 219/385 (56%), Positives = 288/385 (73%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
+++ ++YD+V SFD + L+E LLRGI+ YGF +PSAIQQR I+P +G DV+ QAQSG
Sbjct: 27 QDEFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSG 86
Query: 70 TGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTS 129
TGKT TF LQ +D + Q L+LAPTRELA QI+KV+ AL + VKVHAC+GGTS
Sbjct: 87 TGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTS 146
Query: 130 LQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF 189
++ED L+ G ++VGTPGRVFDM+ R+ + D IKMF+LDEADEMLS GFK+QIY+IF
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIF 206
Query: 190 TMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY 249
+LPP QV + SATMP + LE+T KFM PVRILVK+DELTLEGI Q+YVNVE+E +K
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKL 266
Query: 250 DCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRS 309
+ L DLY+++++TQ+VIF NTRRKV+ LT+++R + TVSA + D+ Q RD IM+EFRS
Sbjct: 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 326
Query: 310 GSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKD 369
GSSR+LI+TDLLARGIDVQQVSLVIN+DLP+ ENY NFVT D
Sbjct: 327 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDD 386
Query: 370 IGAMRELERFYSTQIEELPSSISEL 394
+ ++++FY+ +EELPS++++L
Sbjct: 387 QRMLFDIQKFYNVVVEELPSNVADL 411
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 436 bits (1120), Expect = e-122
Identities = 215/385 (55%), Positives = 287/385 (73%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
E + YD+V SFD ++L+ +LLRGI+ YGF +PSAIQQR I+P +G DV+ QAQSG
Sbjct: 29 EETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSG 88
Query: 70 TGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTS 129
TGKT TF LQ +D + Q L+LAPTRELA QI+KV+ AL ++ VK AC+GGTS
Sbjct: 89 TGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTS 148
Query: 130 LQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF 189
++ED L+ G ++VGTPGRVFD++ R+ + D IKMF+LDEADEMLS GFK+QIY+IF
Sbjct: 149 VREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIF 208
Query: 190 TMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY 249
+LP QV + SATMP + LE+T KFM PVRILVK+DELTLEGI Q+YVNV++E++K
Sbjct: 209 QLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKL 268
Query: 250 DCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRS 309
+ L DLY+++++TQ+VIF NTRRKV+ LT+++R + TVSA + D+ Q RD IM+EFRS
Sbjct: 269 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 328
Query: 310 GSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKD 369
GSSR+LI+TDLLARGIDVQQVSLVIN+DLP+ ENY NF+T++D
Sbjct: 329 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSED 388
Query: 370 IGAMRELERFYSTQIEELPSSISEL 394
M +++RFY+ +EELPS++++L
Sbjct: 389 ERMMADIQRFYNVVVEELPSNVADL 413
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 405 bits (1041), Expect = e-113
Identities = 206/379 (54%), Positives = 281/379 (73%), Gaps = 3/379 (0%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
KV +F+ + LK++LLRGI+ YGF PS+IQ RAI II GKDV+AQAQSGTGKT TF+I
Sbjct: 20 KVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTI 79
Query: 79 AALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEAL- 137
LQ ID + K Q LIL+PTRELA QI +VV L +M+V A GG +L++D + +
Sbjct: 80 GLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQ 139
Query: 138 RGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST--GFKEQIYNIFTMLPPT 195
+ G Q + GTPGRV DMI +++ +T N++M +LDEADE+LS GFK+QIY+IF LP
Sbjct: 140 KHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKN 199
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
QVV++SATM D+LEVT KFM DPV+ILVK+DE++LEGI QY VNV++E++K+D L D+
Sbjct: 200 CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
Query: 256 YDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
YDS+++TQ VIFCNT++KV+ L++RL ++NF V +++ D++Q+ERD +M +FR+G SR+L
Sbjct: 260 YDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRE 375
ISTD+ ARGIDVQQVSLVINYDLP ENY NF+T D+ +RE
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLRE 379
Query: 376 LERFYSTQIEELPSSISEL 394
+E+FYS +I +P++ +EL
Sbjct: 380 IEKFYSIKINPMPANFAEL 398
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 404 bits (1038), Expect = e-112
Identities = 194/314 (61%), Positives = 265/314 (83%)
Query: 20 VVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIA 79
++ +FD + L+E+LLRGI+ YGF +PSAIQQRAI I++ +DV+AQAQSGTGKT TFSI+
Sbjct: 24 IIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSIS 83
Query: 80 ALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
LQ++D +++ Q LIL+PTRELA+QIQKVV+AL +M+V+ HACIGGT+L ED L
Sbjct: 84 VLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 143
Query: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199
G ++ GTPGRVFDMI RR +T IK+ +LDEADEML+ GFKEQ+Y+I+ LPP +QVV
Sbjct: 144 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVV 203
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
LLSAT+P ++LE+TSKFM DP+RILVK+DELTLEGI Q++V V+ E++K+D L DLYD++
Sbjct: 204 LLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTL 263
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
++TQAV+FCNTRRKV+ LT++++E NFTVS+++ D++Q++RD +MKEFR+G++R+LISTD
Sbjct: 264 TITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTD 323
Query: 320 LLARGIDVQQVSLV 333
+ ARG+DV QVSLV
Sbjct: 324 VWARGLDVPQVSLV 337
Score = 55.1 bits (131), Expect = 2e-07
Identities = 24/62 (38%), Positives = 38/62 (60%)
Query: 333 VINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELPSSIS 392
VINYDLP+N+E Y NFV D+ +R++E++YSTQI+E+P +I+
Sbjct: 446 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIA 505
Query: 393 EL 394
++
Sbjct: 506 DI 507
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 392 bits (1006), Expect = e-109
Identities = 187/373 (50%), Positives = 272/373 (72%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K + SFDD+ + +++LRG++ YG+ +PS IQQRA++PI++G+DV+AQAQSGTGKT +I
Sbjct: 19 KPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAI 78
Query: 79 AALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALR 138
+ Q ++ + Q L+L+P+RELA Q +K + A+ H +++ HACIGG S+ ED + L
Sbjct: 79 SVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLE 138
Query: 139 GGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV 198
G + GTPGRV+DMI R +T +K+ +LDE+DEMLS G K+QIY+++ LP QV
Sbjct: 139 RGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQV 198
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDS 258
L+SAT+P ++LE+T KFM DPVRILVK DELTLEGI QYYV+V++E++K+D L DLY
Sbjct: 199 CLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGR 258
Query: 259 ISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIST 318
+++ QA+IFCNTR+KV+ LTE++R +NF VS+++ D +Q+ERD IM +FRS SR+LI++
Sbjct: 259 LTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIAS 318
Query: 319 DLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELER 378
D+ ARGIDVQ VS VINYD+P+N E Y NFV + D+ ++++ER
Sbjct: 319 DVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIER 378
Query: 379 FYSTQIEELPSSI 391
Y T+I E+P+ +
Sbjct: 379 HYGTKIREMPADL 391
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 319 bits (817), Expect = 5e-87
Identities = 167/370 (45%), Positives = 249/370 (67%), Gaps = 9/370 (2%)
Query: 27 LKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDE 86
++LKEELLRGI+G+GF +PSAIQ+ A+ P GKDV Q+Q+G+GKT I LQ ID
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC 60
Query: 87 KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVG 146
+ Q ++LAP R +A + + + +L +++V C+G + E+ + + +++G
Sbjct: 61 EDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNA-TCLGFDTTAENDKI----SHVLMG 115
Query: 147 TPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMP 206
TP D + T IKMF+LDEADEMLS GFK+QIY +F +P QVVLLSATMP
Sbjct: 116 TPK---DFLSNIPSDTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMPQDVQVVLLSATMP 172
Query: 207 GDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVI 266
+VL+VT++FM+DP+RILVKKDELTLEGI Q+Y+NV+++++K++CL DL + TQA+I
Sbjct: 173 SEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQALI 232
Query: 267 FCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGID 326
FCNTRR+V +LTE+L VS + +++ ER+ ++K+F S ++R+L++TDL+ARG++
Sbjct: 233 FCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMN 292
Query: 327 VQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEE 386
+++ SL+INYD+ N ENY +F T DI ++++E YST+IEE
Sbjct: 293 IRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIENHYSTRIEE 351
Query: 387 LPSSISELFD 396
+P S E D
Sbjct: 352 MPESFLEYLD 361
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 297 bits (761), Expect = 2e-80
Identities = 158/288 (54%), Positives = 205/288 (70%), Gaps = 12/288 (4%)
Query: 13 IQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGK 72
I+S ++++V SFDD+ L E LL GI+ YG +PSAIQQRAILP I G V+ QAQSGTGK
Sbjct: 68 IESNWNEIVDSFDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGK 127
Query: 73 TGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQE 132
TFSI+ L I+ +KA Q LI QKVV+AL HMD H CIGGT++
Sbjct: 128 MATFSISILHQIELDVKATQALI-----------QKVVIALGDHMDASCHTCIGGTNVHA 176
Query: 133 DSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTM 191
+ + L+ A IIVGTPG VFDM++ R IKMF+LD+ DEMLS GFK+QIY IF
Sbjct: 177 EVQKLQMEAPHIIVGTPGHVFDMLNWRYLSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQE 236
Query: 192 LPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDC 251
L +QVVL SATMP DVLEVT KFM++ + ILVKK+ELTLEGI Q+Y+N+E E++K D
Sbjct: 237 LNSNTQVVLPSATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQFYINMEREEWKLDT 296
Query: 252 LTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQE 299
L DLY+++++ QAVIF NTRRK + LT+++ +FTVSA++ D+ Q+E
Sbjct: 297 LGDLYETLTIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 276 bits (706), Expect = 4e-74
Identities = 151/371 (40%), Positives = 217/371 (57%), Gaps = 2/371 (0%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F+D LK ELL GIF GF +PS IQ+ AI I G+D+LA+A++GTGKT F I L+
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106
Query: 83 NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
+ K+ Q LI+ PTRELALQ +VV L H + GGT+L++D L
Sbjct: 107 KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 166
Query: 143 IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
I+VGTPGRV D+ R++ + +FI+DEAD+MLS FK I I + LPPT Q +L S
Sbjct: 167 ILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 226
Query: 203 ATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVT 262
AT P V E K + P I + +ELTL+GI QYY VEE Q K CL L+ + +
Sbjct: 227 ATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVEERQ-KLHCLNTLFSKLQIN 284
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLA 322
QA+IFCN+ +VE L +++ + ++ ++ ++QQER+ + EFR G R L+ +DLL
Sbjct: 285 QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 344
Query: 323 RGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYST 382
RGID+Q V++VIN+D P E Y N + D + ++E+ T
Sbjct: 345 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 404
Query: 383 QIEELPSSISE 393
+I +P++I +
Sbjct: 405 EIAAIPATIDK 415
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 268 bits (686), Expect = 8e-72
Identities = 137/368 (37%), Positives = 221/368 (59%), Gaps = 2/368 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+D L +LL GIF G+ +PS IQ+ +I + G+D+LA+A++GTGKTG + I ++
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
I +KA Q +++ PTRELALQ ++ + L+ H+ +KV GGT L++D L G +
Sbjct: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHL 164
Query: 144 IVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSA 203
++ TPGR+ D++++ + K ++ K +LDEAD++LS F+ + + LP QV+L SA
Sbjct: 165 VIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSA 224
Query: 204 TMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ 263
T P V K M P I + +ELTL G+ QYY V+E+Q K CL L+ + + Q
Sbjct: 225 TFPNTVTSFMQKHMHKPYEINL-MEELTLLGVTQYYAFVQEKQ-KVHCLNTLFRKLQINQ 282
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
++IFCN+ ++VE L +++ E ++ I+S + Q R+ + +FR G+ R L+ +DLL R
Sbjct: 283 SIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTR 342
Query: 324 GIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQ 383
GID+Q V++VIN+D P N E Y N +T +D +R +E+ T+
Sbjct: 343 GIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTR 402
Query: 384 IEELPSSI 391
IE +P ++
Sbjct: 403 IEPIPKTV 410
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 263 bits (671), Expect = 4e-70
Identities = 140/370 (37%), Positives = 218/370 (58%), Gaps = 2/370 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+D LK +LLRGI+ GF +PS IQ+ +I + G D+LA+A++GTGKTG F I L+
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
ID + Q +IL PTRELALQ +V L+ ++ ++V GGTSL++D L +
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 144 IVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSA 203
+VGTPGR+ D+ + + + M ++DEAD++LS F+ I + LP + Q+++ SA
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSA 335
Query: 204 TMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ 263
T P V +++K P I+ D+LTL G+ QYY VEE Q K CL L+ + + Q
Sbjct: 336 TFPVTVKSFKDRYLKKPY-IINLMDQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQINQ 393
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
++IFCN+ +VE L +++ E ++ I++ + Q R+ + +FR+G+ R L+ TDL R
Sbjct: 394 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTR 453
Query: 324 GIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQ 383
GID+Q V++VIN+D P E+Y N VT +D M + E+ T+
Sbjct: 454 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTE 513
Query: 384 IEELPSSISE 393
I+ +PS I +
Sbjct: 514 IKPIPSLIDK 523
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 261 bits (667), Expect = 1e-69
Identities = 137/368 (37%), Positives = 217/368 (58%), Gaps = 2/368 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F++ LK ELL GIF G+ PS IQ+ AI + GKDVLA+A++GTGKTG + I L+
Sbjct: 59 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 118
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
ID Q L++ PTRELALQ ++ + LA H+D++V GGT L++D + Q+
Sbjct: 119 IDPTKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQL 178
Query: 144 IVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSA 203
I+ TPGR+ D++D+++ + ++ +LDEAD++LS F+ + ++ LP Q++L SA
Sbjct: 179 IIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSA 238
Query: 204 TMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ 263
T P V K +++P I + +ELTL+G+ QYY V+E Q K CL L+ + + Q
Sbjct: 239 TFPLTVKNFMEKHLREPYEINL-MEELTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQINQ 296
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
++IFCN+ ++VE L +++ E + I++ + Q R+ + +FR G R L+ +DL R
Sbjct: 297 SIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTR 356
Query: 324 GIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQ 383
GIDVQ V++VIN+D P E Y N +T +D + +E+ T+
Sbjct: 357 GIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTE 416
Query: 384 IEELPSSI 391
I+ +P I
Sbjct: 417 IKPIPKVI 424
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 260 bits (664), Expect = 3e-69
Identities = 135/371 (36%), Positives = 225/371 (60%), Gaps = 3/371 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+D LK ELL GIF G+ +PS IQ+ +I + G+D+LA+A++GTGK+G + I L+
Sbjct: 87 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 146
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMD-VKVHACIGGTSLQEDSEALRGGAQ 142
+D K Q +++ PTRELALQ+ ++ + ++ HM KV A GGT+L++D L
Sbjct: 147 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH 206
Query: 143 IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
+++ TPGR+ D+I + + K D+++M +LDEAD++LS F + + +I LP Q++L S
Sbjct: 207 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYS 266
Query: 203 ATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVT 262
AT P V + + ++ P I + +ELTL+G+ QYY V E Q K CL L+ + +
Sbjct: 267 ATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQIN 324
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLA 322
Q++IFCN+ ++VE L +++ + ++ I++ ++Q+ R+ + +FR+G R L+ TDL
Sbjct: 325 QSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFT 384
Query: 323 RGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYST 382
RGID+Q V++VIN+D P E Y N +T D ++ +E T
Sbjct: 385 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 444
Query: 383 QIEELPSSISE 393
+I+ +PS+I +
Sbjct: 445 EIKPIPSNIDK 455
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 259 bits (663), Expect = 4e-69
Identities = 137/370 (37%), Positives = 216/370 (58%), Gaps = 2/370 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+D LK +LL+GI+ GF +PS IQ+ +I + G D+LA+A++GTGKTG F I L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
ID Q +IL PTRELALQ +V L+ +++++V GGTSL++D L +
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 144 IVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSA 203
+VGTPGR+ D+ + + + M ++DEAD++LS F+ + + LP Q ++ SA
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSA 305
Query: 204 TMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ 263
T P V + ++ P ++ D+LTL G+ QYY VEE Q K CL L+ + + Q
Sbjct: 306 TFPVTVKAFKDRHLRKPY-VINLMDQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQINQ 363
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
++IFCN+ +VE L +++ E ++ I++ + Q R+ + EFR+G+ R L+ TDL R
Sbjct: 364 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTR 423
Query: 324 GIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQ 383
GID+Q V++VIN+D P E+Y N VT +D M + E+ T+
Sbjct: 424 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTE 483
Query: 384 IEELPSSISE 393
I+ +PS+I +
Sbjct: 484 IKPIPSNIDQ 493
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 257 bits (657), Expect = 2e-68
Identities = 143/368 (38%), Positives = 207/368 (55%), Gaps = 2/368 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+D LK ELL GIF GF PS IQ+ +I + G+D+LA+A++GTGKT F I +L+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
+D K Q LIL PTRELALQ +V L HM+VKV GGT+L++D L I
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
Query: 144 IVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSA 203
+VGTPGRV D+ + + F++DEAD++LS F I + + P Q+ L SA
Sbjct: 166 VVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSA 225
Query: 204 TMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ 263
T P V K + P I + DELTL G+ QYY V+E Q K CL L+ + + Q
Sbjct: 226 TFPLIVKNFMDKHLNKPYEINL-MDELTLRGVTQYYAFVDESQ-KVHCLNTLFSKLQINQ 283
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
++IFCN+ +VE L +++ E ++ ++ + Q R+ + FR+G R L+ +DLL R
Sbjct: 284 SIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTR 343
Query: 324 GIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQ 383
GID+Q V++VIN+D P N E Y +F++ D + +E T+
Sbjct: 344 GIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTE 403
Query: 384 IEELPSSI 391
I+ +P SI
Sbjct: 404 IQPIPPSI 411
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 247 bits (630), Expect = 2e-65
Identities = 148/403 (36%), Positives = 227/403 (55%), Gaps = 15/403 (3%)
Query: 5 ITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLA 64
I + ++ + S+ ++ +++D LKE+LL+GI+ GF PS IQ+ AI PII+G+D+ A
Sbjct: 21 IREFEDLRSDSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRA 80
Query: 65 QAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHAC 124
QAQSGTGKTG F++AALQ D Q L+LA TRE+A Q L M +V
Sbjct: 81 QAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALL 140
Query: 125 IGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQ 184
GG+ + D AL I+VGTPGRV MI+ DNIK+F++DEADEML GF+EQ
Sbjct: 141 SGGSPIAADKVALEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQ 200
Query: 185 IYNIFTMLPPTS--QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNV 242
+ +IF + Q+ + SAT + L V+ + + +PV I ++ ++ TL+GI QY++++
Sbjct: 201 VKSIFRRITNKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDL 260
Query: 243 EE--------EQYKYDCLTDLYDSI---SVTQAVIFCNTRRKVEELTERLRENNFTVSAI 291
+ E Y L LYD + Q+++F N++ + + L + + I
Sbjct: 261 RKEPPFRKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELI 320
Query: 292 YSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPS--NKENYXXXX 349
++L Q ER+ + FR G+ R LIS+ LL+RGID+Q +S+V D+PS K Y
Sbjct: 321 SAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRI 380
Query: 350 XXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELPSSIS 392
N V ++ ++ +ERFY+T I+ELP+ S
Sbjct: 381 GRSGRYGRKGIAINIVYEHELKNLKAIERFYNTTIKELPADFS 423
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 243 bits (620), Expect = 4e-64
Identities = 137/381 (35%), Positives = 224/381 (57%), Gaps = 18/381 (4%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEG--KDVLAQAQSGTGKTGTFSI 78
V SF++L+LK ELL+GI+ F +PS IQ++A+ ++ ++++ Q+QSGTGKT F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 79 AALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDS--EA 136
L +D + PQ + LAP+RELA QI VV + + +VK I +DS +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI------KDSVPKG 226
Query: 137 LRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPT 195
+ AQI++GTPG V D++ RR +IK+F+LDEAD ML G +Q I +LP
Sbjct: 227 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN 286
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
+Q+VL SAT V + +F + I +K +EL++EGI Q Y++ + E++KY+ L +L
Sbjct: 287 TQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVEL 346
Query: 256 YDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
Y +++ Q++IFC + EE+ R+ + TV+ + +L+ +RD IM FR G+S++L
Sbjct: 347 YGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVL 406
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSNK------ENYXXXXXXXXXXXXXXXXXNFV-TNK 368
++T+++ARGIDV QV+LV+NYD+P ++ + Y NFV K
Sbjct: 407 VTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 466
Query: 369 DIGAMRELERFYSTQIEELPS 389
M ++ ++ I +P+
Sbjct: 467 SWEEMNAIQEYFQRPITRVPT 487
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 239 bits (611), Expect = 4e-63
Identities = 128/371 (34%), Positives = 214/371 (57%), Gaps = 10/371 (2%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+D LK ELL GI+ GF PS IQ+ +I + G+D+LA+A++GTGKT F I L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 84 IDEKIKAPQG-LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
ID+ QG +L T ++ ++ K H+ ++V GGTSL++D L
Sbjct: 193 IDQDNNVIQGNCVLDHTSQVCKELGK-------HLKIQVMVTTGGTSLKDDIMRLYQPVH 245
Query: 143 IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
++VGTPGR+ D+ + + + + ++DEAD++LS F+ + ++ + LP + Q+++ S
Sbjct: 246 LLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFS 305
Query: 203 ATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVT 262
AT P V + +F+ +P ++ DELTL+GI Q+Y VEE Q K CL L+ + +
Sbjct: 306 ATFPVTVKDFKDRFLTNPY-VINLMDELTLKGITQFYAFVEERQ-KIHCLNTLFSKLQIN 363
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLA 322
Q++IFCN+ +VE L +++ E ++ I++ + Q R+ + +FR+G+ R L+ TDL
Sbjct: 364 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 423
Query: 323 RGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYST 382
RGID+Q V++VIN+D P N E Y N +T +D + +E+ T
Sbjct: 424 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 483
Query: 383 QIEELPSSISE 393
+I+++P I +
Sbjct: 484 EIKQIPPHIDQ 494
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 228 bits (580), Expect = 2e-59
Identities = 137/373 (36%), Positives = 202/373 (53%), Gaps = 6/373 (1%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F D LK ELLR I GF PS +Q I I G DV+ QA+SG GKT F ++ LQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVKVHACIGGTSLQEDSEALRGGA- 141
I+ L+L TRELA QI + + ++ D KV GG +++ + L+
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167
Query: 142 QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML-STGFKEQIYNIFTMLPPTSQVVL 200
I+VGTPGRV + + N++ FILDE D+ML S + + IF M P QV++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Query: 201 LSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
SAT+ ++ V KFM+DP+ I V + +LTL G+ Q+Y+ + E + K L DL D++
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLLDAL 286
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
Q VIF + + EL + L E NF I+S + Q+ER T K F+ G RIL++TD
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 346
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTN-KDIGAMRELER 378
L+ RGID+++V++VINYD+P + + Y FV + D + +++
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406
Query: 379 FYSTQIEELPSSI 391
+ I+ELP I
Sbjct: 407 RFEVDIKELPEQI 419
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 228 bits (580), Expect = 2e-59
Identities = 137/373 (36%), Positives = 202/373 (53%), Gaps = 6/373 (1%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F D LK ELLR I GF PS +Q I I G DV+ QA+SG GKT F ++ LQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVKVHACIGGTSLQEDSEALRGGA- 141
I+ L+L TRELA QI + + ++ D KV GG +++ + L+
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP 167
Query: 142 QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML-STGFKEQIYNIFTMLPPTSQVVL 200
I+VGTPGRV + + N++ FILDE D+ML S + + IF M P QV++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227
Query: 201 LSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
SAT+ ++ V KFM+DP+ I V + +LTL G+ Q+Y+ + E + K L DL D++
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KTRKLNDLLDAL 286
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
Q VIF + + EL + L E NF I+S + Q+ER T K F+ G RIL++TD
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 346
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTN-KDIGAMRELER 378
L+ RGID+++V++VINYD+P + + Y FV + D + +++
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406
Query: 379 FYSTQIEELPSSI 391
+ I+ELP I
Sbjct: 407 RFEVDIKELPEQI 419
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 227 bits (579), Expect = 2e-59
Identities = 135/380 (35%), Positives = 217/380 (56%), Gaps = 17/380 (4%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGK---DVLAQAQSGTGKTGTFS 77
V SF++L+LK +LL+G++ GF PS IQ+ A LP++ + +++AQ+QSGTGKT F
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 78 IAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALA-IHMDVKVHACIGGTSLQEDSEA 136
+A L ++ K PQ L L+PT ELALQ KV+ + + ++K+ + G L+ +
Sbjct: 150 LAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209
Query: 137 LRGGAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPP 194
QI++GTPG V D + + IK+F+LDEAD M++T G ++Q I MLP
Sbjct: 210 ---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266
Query: 195 TSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTD 254
Q++L SAT V + K + DP I +K++E TL+ I QYYV K+ L +
Sbjct: 267 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326
Query: 255 LYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
LY +I++ QA+IFC+TR+ L L + V+ + ++ ++R +++ FR G ++
Sbjct: 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386
Query: 315 LISTDLLARGIDVQQVSLVINYDLPSNK------ENYXXXXXXXXXXXXXXXXXNFVTNK 368
L++T++ ARGIDV+QVS+VIN+DLP +K E Y N V +K
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 369 -DIGAMRELERFYSTQIEEL 387
+ + ++ ++ +IE L
Sbjct: 447 HSMNILNRIQEHFNKKIERL 466
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 226 bits (576), Expect = 5e-59
Identities = 132/379 (34%), Positives = 216/379 (56%), Gaps = 15/379 (3%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEG--KDVLAQAQSGTGKTGTFSI 78
V SF++L+LK +LL+G++ GF PS IQ+ A+ ++ ++++AQ+QSGTGKT F +
Sbjct: 90 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149
Query: 79 AALQNIDEKIKAPQGLILAPTRELALQIQKVVMALA-IHMDVKVHACIGGTSLQEDSEAL 137
A L ++ + PQ L L+PT ELALQ KV+ + + ++K+ + G L+ +
Sbjct: 150 AMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI- 208
Query: 138 RGGAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPT 195
QI++GTPG V D + + IK+F+LDEAD M++T G ++Q I MLP
Sbjct: 209 --SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 266
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
Q++L SAT V + K + DP I +K++E TL+ I QYYV K+ L +L
Sbjct: 267 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 326
Query: 256 YDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
Y +I++ QA+IFC+TR+ L L + V+ + ++ ++R +++ FR G ++L
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSNK------ENYXXXXXXXXXXXXXXXXXNFVTNK- 368
++T++ ARGIDV+QVS+VIN+DLP +K E Y N V +K
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446
Query: 369 DIGAMRELERFYSTQIEEL 387
+ + ++ ++ +IE L
Sbjct: 447 SMNILNRIQEHFNKKIERL 465
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 226 bits (576), Expect = 5e-59
Identities = 135/388 (34%), Positives = 210/388 (53%), Gaps = 7/388 (1%)
Query: 10 ENQIQSTYDKVVYS-FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQS 68
+ I+ +Y + S F D LK ELLR I GF PS +Q I I G DVL QA+S
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 90
Query: 69 GTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVKVHACIGG 127
G GKT F +A LQ I+ L++ TRELA QI K + +M VKV GG
Sbjct: 91 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150
Query: 128 TSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQI 185
S+++D E L+ ++VGTPGR+ ++ R F N+K F+LDE D+ML + +
Sbjct: 151 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDV 210
Query: 186 YNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVEE 244
IF + P Q ++ SAT+ D+ V KFM+DP+ + V + +LTL G+ QYYV +++
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
Query: 245 EQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIM 304
+ K L DL D + Q +IF + ++ L + L E NF AI+ + Q+ER +
Sbjct: 271 SE-KNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRY 329
Query: 305 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNF 364
++F+ RIL++T+L RG+D+++V++V NYD+P + + Y F
Sbjct: 330 QQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 389
Query: 365 VTNK-DIGAMRELERFYSTQIEELPSSI 391
V+++ D + +++ + + ELP I
Sbjct: 390 VSDENDAKILNDVQDRFEVNVAELPEEI 417
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 223 bits (569), Expect = 3e-58
Identities = 134/375 (35%), Positives = 207/375 (54%), Gaps = 8/375 (2%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F D LK ELLR I GF PS +QQ I I G DVL QA+SG GKT F ++ LQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVKVHACIGGTSLQEDSEALRGGAQ 142
I+ L+L TRELA QI+ + ++ DV+ GG ++++D EA + ++
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 143 ---IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML-STGFKEQIYNIFTMLPPTSQV 198
I+V TPGR+ ++ +I K +++K F+LDE D++L S + I +F PP QV
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQV 232
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVEEEQYKYDCLTDLYD 257
++ SAT+ ++ + KFM++P+ I V + +LTL G+ Q+YV +EE+ K + DL D
Sbjct: 233 MMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKA-KNRKINDLLD 291
Query: 258 SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIS 317
S+ Q VIF + + EL LRE NF I+ L Q+ER K F+ RI ++
Sbjct: 292 SLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVA 351
Query: 318 TDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTN-KDIGAMREL 376
TD+ RGID+++V++VINYD+P + ++Y F ++ +D + ++
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKI 411
Query: 377 ERFYSTQIEELPSSI 391
+ + I ELP I
Sbjct: 412 QERFEVNITELPDEI 426
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 223 bits (568), Expect = 4e-58
Identities = 121/321 (37%), Positives = 199/321 (61%), Gaps = 7/321 (2%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEG--KDVLAQAQSGTGKTGTFSIAA 80
SFD+L L ELL+GI+ F +PS IQ+RA+ ++ ++++AQ+QSGTGKT FS+
Sbjct: 93 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 152
Query: 81 LQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGG 140
L ++ + +PQ + LAP+RELA Q +VV + + + S +++ +
Sbjct: 153 LTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-SFEKNKQI---N 208
Query: 141 AQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPTSQVV 199
AQ+IVGTPG V D++ R++ + IK+F+LDEAD ML G +Q + LP +Q+V
Sbjct: 209 AQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLV 268
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
L SAT V + K + + + ++ +E+ ++ I Q Y++ + E K+D LT+LY +
Sbjct: 269 LFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLM 328
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
++ ++IF T++ L +L+ VS ++ DLQ QERD ++ +FR G S++LI+T+
Sbjct: 329 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 388
Query: 320 LLARGIDVQQVSLVINYDLPS 340
+LARGID+ VS+V+NYDLP+
Sbjct: 389 VLARGIDIPTVSMVVNYDLPT 409
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 223 bits (567), Expect = 5e-58
Identities = 138/395 (34%), Positives = 211/395 (52%), Gaps = 7/395 (1%)
Query: 3 DGITDIDENQIQSTYDKVVYS-FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKD 61
DG + ++ +Y + S F D LK ELLR I GF PS +Q I I G D
Sbjct: 25 DGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD 84
Query: 62 VLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVK 120
VL QA+SG GKT F +A LQ ++ L++ TRELA QI K + +M +VK
Sbjct: 85 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 144
Query: 121 VHACIGGTSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST 179
V GG S+++D E L+ I+VGTPGR+ + + +IK FILDE D+ML
Sbjct: 145 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 204
Query: 180 -GFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQ 237
+ + IF M P QV++ SAT+ ++ V KFM+DP+ I V + +LTL G+ Q
Sbjct: 205 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQ 264
Query: 238 YYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQ 297
YYV +++ + K L DL D + Q VIF + ++ L + L E NF AI+ + Q
Sbjct: 265 YYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 323
Query: 298 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXX 357
+ER + ++F+ RIL++T+L RG+D+++V++ NYD+P + + Y
Sbjct: 324 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 383
Query: 358 XXXXXNFVTNK-DIGAMRELERFYSTQIEELPSSI 391
FV+++ D + +++ + I ELP I
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 418
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 221 bits (562), Expect = 2e-57
Identities = 134/389 (34%), Positives = 209/389 (53%), Gaps = 8/389 (2%)
Query: 10 ENQIQSTYDKVVYS-FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQS 68
+ ++ TY + S F D LK E+LR I GF PS +Q I + G D+L QA+S
Sbjct: 28 KKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKS 87
Query: 69 GTGKTGTFSIAALQNIDEKIKAP-QGLILAPTRELALQIQKVVMALAIHMD-VKVHACIG 126
G GKT F +A LQ ++ L++ TRELA QI K + +M VKV G
Sbjct: 88 GMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFG 147
Query: 127 GTSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQ 184
G ++Q+D E L+ G I+VGTPGR+ +I + +K F+LDE D+ML +
Sbjct: 148 GMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRD 207
Query: 185 IYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVE 243
+ IF P QV++ SAT+ D+ V KFM+DP+ + V + +LTL G+ Q+YVN++
Sbjct: 208 VQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLK 267
Query: 244 EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
E + K L +L D + Q VIF + ++ L++ L E NF I+ + Q+ER
Sbjct: 268 ENE-KNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNR 326
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN 363
++F+ RIL++T+L RG+D+++V++V NYD+P + + Y
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 386
Query: 364 FVTNK-DIGAMRELERFYSTQIEELPSSI 391
FV+++ D + E++ + I ELP I
Sbjct: 387 FVSDENDAKILNEVQDRFDVNISELPEEI 415
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 214 bits (546), Expect = 1e-55
Identities = 132/389 (33%), Positives = 206/389 (52%), Gaps = 7/389 (1%)
Query: 9 DENQIQSTYDKVVYS-FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQ 67
D + + TY + S F D LK E+LR I GF PS +Q I I G DV+ QA+
Sbjct: 27 DARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAK 86
Query: 68 SGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMD-VKVHACIG 126
SG GKT F I LQ ++ + + TRELA QI K + ++ VKV G
Sbjct: 87 SGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFG 146
Query: 127 GTSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTG-FKEQ 184
G ++++D E L I+VGTPGR+ + K D +K F+LDE D+M+ +
Sbjct: 147 GMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRD 206
Query: 185 IYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVE 243
+ I M P QV++ SAT+P ++ V +FM+DP+ + V + +LTL G+ Q+YV ++
Sbjct: 207 VQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLK 266
Query: 244 EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
E + K L +L D++ Q VIF ++ E L + L E NF AI+ + Q+ER +
Sbjct: 267 EAE-KNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSR 325
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN 363
+ F+ RIL++TDL RG+D+++V++V NYD+P + ++Y
Sbjct: 326 YQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAIT 385
Query: 364 FVTNK-DIGAMRELERFYSTQIEELPSSI 391
FV+++ D + ++ + I ELP I
Sbjct: 386 FVSDENDAKTLNSVQDRFDISITELPEKI 414
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 210 bits (535), Expect = 3e-54
Identities = 121/372 (32%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F D LK EL R I GF PS +QQ I I G DVL QA+SG GKT F ++ LQ
Sbjct: 64 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 123
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVKVHACIGGTSLQEDSEALRG--- 139
+D +++ RELA QI+ + + +M DVK GGT + +D+E L+
Sbjct: 124 LDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDT 183
Query: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPTSQV 198
I+V TPGR+ ++ + ++K F++DE D++L + + IF P QV
Sbjct: 184 APHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQV 243
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILVKKD-ELTLEGIGQYYVNVEEEQYKYDCLTDLYD 257
++ SAT+ ++ + +F+++P+ I V + +LTL G+ QYY+ +EE + K L L D
Sbjct: 244 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEERE-KNRKLAQLLD 302
Query: 258 SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIS 317
+ Q +IF + + ELT+ L +NF ++ ++Q+ER K F+ RI +S
Sbjct: 303 DLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVS 362
Query: 318 TDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNK-DIGAMREL 376
TD+ RGID+++++L INYDL + + Y +FV++K D + ++
Sbjct: 363 TDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKI 422
Query: 377 ERFYSTQIEELP 388
+ + +I E P
Sbjct: 423 QERFDVKIAEFP 434
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 208 bits (530), Expect = 1e-53
Identities = 126/358 (35%), Positives = 203/358 (56%), Gaps = 14/358 (3%)
Query: 41 GFVEPSAIQQRAILPIIEG--KDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAP 98
GF PS IQ+ A+ ++ ++++AQ+QSGTGKT F +A L ++ PQ L LAP
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAP 61
Query: 99 TRELALQIQKVVMALA-IHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDR 157
T ELALQ +VV + +DV+V I G + ++ + QII+GTPG V D +
Sbjct: 62 TYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QIIIGTPGTVLDWCFK 118
Query: 158 -RIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSK 215
++ I++F+LDEAD M+ T GF + I LP Q++L SAT V +
Sbjct: 119 LKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAER 178
Query: 216 FMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVE 275
+ DP I ++K+ELTL I QYYV E + KY L ++Y SI++ QA+IFC TRR +
Sbjct: 179 IIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAK 238
Query: 276 ELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 335
LT + ++ VS + +L ++R +I++ FR G ++LI+T++ ARGIDV+QV++V+N
Sbjct: 239 WLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN 298
Query: 336 YDLPSNK------ENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEEL 387
+DLP + E Y N + ++ ++ +++ +++ I++L
Sbjct: 299 FDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQL 356
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 207 bits (528), Expect = 2e-53
Identities = 126/358 (35%), Positives = 202/358 (56%), Gaps = 14/358 (3%)
Query: 41 GFVEPSAIQQRAILPIIEG--KDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAP 98
GF PS IQ+ A+ ++ ++++AQ+QSGTGKT F +A L ++ PQ L LAP
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAP 61
Query: 99 TRELALQIQKVVMALA-IHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDR 157
T ELALQ +VV + +DV+V I G + ++ + QII+GTPG V D +
Sbjct: 62 TYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QIIIGTPGTVLDWCFK 118
Query: 158 -RIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSK 215
++ I++F+LDEAD M+ T GF + I LP Q++L SAT V +
Sbjct: 119 LKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAER 178
Query: 216 FMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVE 275
+ DP I ++K+ELTL I QYYV E + KY L ++Y SI++ QA+IFC TRR +
Sbjct: 179 IIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAK 238
Query: 276 ELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 335
LT + ++ VS + +L ++R +I + FR G ++LI+T++ ARGIDV+QV++V+N
Sbjct: 239 WLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDVKQVTIVVN 298
Query: 336 YDLPSNK------ENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEEL 387
+DLP + E Y N + ++ ++ +++ +++ I++L
Sbjct: 299 FDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQL 356
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 205 bits (521), Expect = 1e-52
Identities = 123/331 (37%), Positives = 190/331 (57%), Gaps = 10/331 (3%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+ L L +L G+ GF PS +Q +AI G D++ QA+SGTGKT FS AL +
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMD-VKVHACIGGTSLQEDSEALRGGAQ 142
+ + + Q LILAPTRE+A+QI V+ A+ I M+ ++ H IGGT L +D L+
Sbjct: 124 LVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CH 182
Query: 143 IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTG-FKEQIYNIFTMLPPTSQVVLL 201
I VG+PGR+ +I+ +I++FILDEAD++L G F+EQI I++ LP + Q++ +
Sbjct: 183 IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAV 242
Query: 202 SATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEE-------QYKYDCLTD 254
SAT P + +K+M+DP + + + +L G+ QYY V + K L +
Sbjct: 243 SATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQE 302
Query: 255 LYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
L+ I QA++F N + + L + L F I ++ Q +R M + + R+
Sbjct: 303 LFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRV 362
Query: 315 LISTDLLARGIDVQQVSLVINYDLPSNKENY 345
LISTDL +RGID ++V+LV+N D+P + E Y
Sbjct: 363 LISTDLTSRGIDAEKVNLVVNLDVPLDWETY 393
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 202 bits (515), Expect = 5e-52
Identities = 116/364 (31%), Positives = 198/364 (53%), Gaps = 2/364 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
++ L L LL+ I G+ PS +Q +I ++ GK++L ++++GTGKT ++ + L
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM 169
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
I+ + QG+IL P RELALQI + V ++ V +GGTS+Q+D + G +
Sbjct: 170 INSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHV 229
Query: 144 IVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSA 203
+VGTPGR+ D++++R+ + + DEAD++L F E + + +LP Q++L SA
Sbjct: 230 MVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQMLLYSA 289
Query: 204 TMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ 263
T P V ++MK+P+ I + K EL G+ Q+Y V+ + K CL L +S+ Q
Sbjct: 290 TFPYFVTGFIRRYMKNPLCINLMK-ELAPVGVKQFYTYVKPSE-KLLCLKSLLLRLSINQ 347
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
VIFCN+ + VE L ++ E I+S + Q++R+ + F G +IL++TDL+ R
Sbjct: 348 CVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITR 407
Query: 324 GIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQ 383
G+D + VIN+D+ + E+Y + VT ++ + ++E +
Sbjct: 408 GVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLGKE 467
Query: 384 IEEL 387
I L
Sbjct: 468 ISPL 471
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 202 bits (514), Expect = 7e-52
Identities = 118/382 (30%), Positives = 197/382 (50%), Gaps = 6/382 (1%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K + F D + +L I GF EP+ IQ + ++G+D++ A++G+GKT + +
Sbjct: 135 KPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 194
Query: 79 AALQNIDEKIKAPQG-----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
AL ++ + + Q LILAPTRELA+QIQ+ + V+ GG
Sbjct: 195 PALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQ 254
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
LR G +I++ TPGR+ DM++ + + +LDEAD ML GF+ QI I + +
Sbjct: 255 IRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 314
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYD-CL 252
P Q +L SAT P +V + +F++DP + ++ +L + + KY+ L
Sbjct: 315 PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLL 374
Query: 253 TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
T L + ++ +IF T+R +++T +LR + + AI+ D Q ERD ++ EF+SG S
Sbjct: 375 TLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 434
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGA 372
I+ +TD+ ARG+DV+ + V+NYD P+ E+Y F T+ +
Sbjct: 435 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKF 494
Query: 373 MRELERFYSTQIEELPSSISEL 394
REL + + +P ++S L
Sbjct: 495 ARELVKILQEAGQVVPPTLSAL 516
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 199 bits (506), Expect = 6e-51
Identities = 118/351 (33%), Positives = 190/351 (53%), Gaps = 11/351 (3%)
Query: 6 TDIDENQIQSTYDKVV---YSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDV 62
T + N+I D+V F++ + ++ I GF +P+AIQ + + G+D+
Sbjct: 131 TFLTSNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDL 190
Query: 63 LAQAQSGTGKTGTFSIAALQNID-----EKIKAPQGLILAPTRELALQIQKVVMALAIHM 117
+ AQ+G+GKT + + A+ +I+ E+ P L+LAPTRELA QIQ+V + +
Sbjct: 191 VGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNT 250
Query: 118 DVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML 177
V+ GG + + L G +I++ TPGR+ D ++R +LDEAD ML
Sbjct: 251 HVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRML 310
Query: 178 STGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQ 237
GF+ QI I + P QV++ SAT P +V ++ +F+ + +++ + L+
Sbjct: 311 DMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNIL 370
Query: 238 YYVNVEEEQYKYDCLTDLYDSISV---TQAVIFCNTRRKVEELTERLRENNFTVSAIYSD 294
V+V +E K L L IS T+ +IF T+++V+E+T + + AI+ D
Sbjct: 371 QIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 430
Query: 295 LQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
QQERD ++ FR+G IL++TD+ ARG+DV V VINYD PSN E+Y
Sbjct: 431 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDY 481
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 199 bits (505), Expect = 8e-51
Identities = 117/380 (30%), Positives = 196/380 (50%), Gaps = 6/380 (1%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ F++ E++ + GF EP+AIQ + + G+D++ AQ+G+GKT +F + A
Sbjct: 86 IQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPA 145
Query: 81 LQNIDEKIKAPQG-----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSE 135
L + ++ +G L+LAPTREL +QI+KVV +++ A GG S Q
Sbjct: 146 LVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIR 205
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
AL GA++++ TPGR+ D+ D+ + +LDEAD ML GF+ Q+ I
Sbjct: 206 ALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNAN 265
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
Q ++ SAT P +V + +M + ++++V +EL + V V + K D L +
Sbjct: 266 RQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGV 325
Query: 256 YDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
D+ + ++FCN +R ++L L + + +A++ D Q RD ++ +FRSG IL
Sbjct: 326 LDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPIL 385
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN-FVTNKDIGAMR 374
I+T++ RG+DV V LVIN+D P + E+Y + F T D R
Sbjct: 386 IATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANAR 445
Query: 375 ELERFYSTQIEELPSSISEL 394
EL R + +PS + ++
Sbjct: 446 ELIRMLREANQTVPSDLEDM 465
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 199 bits (505), Expect = 8e-51
Identities = 110/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K V SF D+ + +L + GF EP+ IQ + ++G+D++ A++G+GKT ++ +
Sbjct: 96 KPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLL 155
Query: 79 AALQNIDEKIKAPQG-----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
A+ +++ + G L+LAPTRELA+QIQ+ +K GG
Sbjct: 156 PAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQ 215
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
L+ G +I++ TPGR+ DM++ + +LDEAD ML GF QI I + +
Sbjct: 216 VRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR 275
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT 253
P Q + SAT P +V +++ KF+ +P ++++ +L + V+V E KY+ L
Sbjct: 276 PDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLV 335
Query: 254 DLYDSI-SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
L + I ++ ++F +T++ +++T +LR + + +I+ D Q ERD ++ EFRSG S
Sbjct: 336 KLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKS 395
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
I+ +TD+ ARG+DV+ V VINYD P + E+Y
Sbjct: 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDY 428
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 197 bits (502), Expect = 2e-50
Identities = 117/382 (30%), Positives = 196/382 (50%), Gaps = 9/382 (2%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V+ F++ L ++ ++G F +P+ IQ + + G+D+++ A++G+GKT F + A
Sbjct: 129 VFEFNEAPLPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPA 187
Query: 81 LQNIDEKIKAPQG-----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSE 135
L +I ++ +G L+L PTRELA Q+Q+V + + +K+ GG S +
Sbjct: 188 LVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQAR 247
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
L G I+V TPGR+ D +D +LDEAD ML GF+ QI I + P
Sbjct: 248 DLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPD 307
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
Q ++ SAT P +V + S F KD + V EL V++ EE K L +L
Sbjct: 308 RQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMEL 367
Query: 256 YDSI---SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
+ I + +IF T+RK +ELT +R + + I+ D Q ERD +++EF++G +
Sbjct: 368 LNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKT 427
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGA 372
I+++TD+ ARG+DV + VINYD P+N E+Y F T+ +
Sbjct: 428 PIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASK 487
Query: 373 MRELERFYSTQIEELPSSISEL 394
++L + + +P ++ ++
Sbjct: 488 AKDLLKVLDEAKQTVPQALRDM 509
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 197 bits (500), Expect = 3e-50
Identities = 122/371 (32%), Positives = 193/371 (51%), Gaps = 15/371 (4%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V SF++ L ++ + GF +P+AIQ + + G+D++ AQ+G+GKT + + A
Sbjct: 236 VVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPA 295
Query: 81 LQNIDEKI-----KAPQGLILAPTRELALQIQKVVMALAIHMDVKV-HACI-GGTSLQED 133
+ +I + + P L+LAPTRELA QIQ VV ++ H CI GG+S
Sbjct: 296 IVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQ 355
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
+ L G ++I+ TPGR+ D ++ R +LDEAD ML GF+ QI I +
Sbjct: 356 ARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 415
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT 253
P QVV+ SAT P +V + F+ D ++I + L+ + V + E K L
Sbjct: 416 PDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLV 475
Query: 254 DLYDSISV--------TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMK 305
L + IS + ++F T+ KVE++ + +R + ++I+ D Q ERD+++K
Sbjct: 476 CLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLK 535
Query: 306 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFV 365
+FR+G S ILI+TD+ +RG+DV+ + VINYD P++ ENY F
Sbjct: 536 DFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFF 595
Query: 366 TNKDIGAMREL 376
T + REL
Sbjct: 596 TPDNAKQAREL 606
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 196 bits (498), Expect = 5e-50
Identities = 129/399 (32%), Positives = 201/399 (50%), Gaps = 25/399 (6%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ SFDD++L E + + + +P+ +Q+ AI II G+D++A AQ+G+GKT F +
Sbjct: 294 ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 353
Query: 81 LQNIDE---------------KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACI 125
L + E + + P GL+LAPTRELA QI + A ++
Sbjct: 354 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 413
Query: 126 GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQI 185
GG + E L G +IV TPGR+ DMI R +NI+ +LDEAD ML GF+ QI
Sbjct: 414 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 473
Query: 186 YNIFTML--PPTS--QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQ---Y 238
I L PPT Q ++ SAT P + E+ S F+ + + + V + T E I Q +
Sbjct: 474 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 533
Query: 239 YVNVEEEQYKYDCLTDLYDSISVTQ---AVIFCNTRRKVEELTERLRENNFTVSAIYSDL 295
++ Y D L+ + D T+ +IF T++ + L E L + N V++I+ D
Sbjct: 534 VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 593
Query: 296 QQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXX 355
Q+ER+ ++ FRSG IL++T + ARG+D+ V VIN+DLPS+ E Y
Sbjct: 594 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 653
Query: 356 XXXXXXXNFVTNKDIGAMRELERFYSTQIEELPSSISEL 394
+F K+ +L +E+PS + ++
Sbjct: 654 GNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDM 692
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 194 bits (494), Expect = 1e-49
Identities = 115/364 (31%), Positives = 195/364 (52%), Gaps = 10/364 (2%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K + +FD+ + +L + GF +P+ IQ + + G+D++ A +G+GKT ++ +
Sbjct: 110 KPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCL 169
Query: 79 AALQNIDEKIKAPQG-----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
+ +I+ + G L+LAPTRELA+QIQ ++ GG +
Sbjct: 170 PGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQ 229
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
L G++I++ TPGR+ DM++ + +LDEAD ML GF+ QI I +
Sbjct: 230 IRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT 253
P Q ++ SAT P +V ++ + ++ DP+++ V EL+ V V + K D L
Sbjct: 290 PDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLN 349
Query: 254 DLYDSISVT---QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
++ S + +IF +T+R +++T+ LRE+ + AI+ D Q+ERD +++EFR+G
Sbjct: 350 KYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNG 409
Query: 311 SSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVT--NK 368
S I+++TD+ ARGIDV+ ++ VINYD+P N E+Y +F T NK
Sbjct: 410 RSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469
Query: 369 DIGA 372
+GA
Sbjct: 470 GLGA 473
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 194 bits (494), Expect = 1e-49
Identities = 125/351 (35%), Positives = 193/351 (54%), Gaps = 18/351 (5%)
Query: 1 MSDGITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPII--- 57
M D + D+ +S + SF +L+LK E+L+ + F P+ IQ+ A LP++
Sbjct: 189 MKDVVVDVQRQDPKSPLYSIS-SFRELRLKPEVLKALDTMNFQFPTRIQETA-LPLLLME 246
Query: 58 EGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHM 117
+++AQAQSGTGKT F + L ID + PQ + LAPT ELA QI +VV + +
Sbjct: 247 PPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI 306
Query: 118 D-VKVHACIGGTSLQEDSEALRGGA---QIIVGTPGRVFDMIDR-RIFKTDNIKMFILDE 172
D +K+H I G ++ A+RG QI++GTPG D + + + I+ +LDE
Sbjct: 307 DNLKIHYAIKGGNMA----AMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDE 362
Query: 173 ADEMLS----TGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD 228
AD M+ T IYN+ + Q +L SAT V+ +K +K+ + +++K++
Sbjct: 363 ADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKRE 422
Query: 229 ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTV 288
E L I Q+YV KY + +LY ++V +VIFC+T+ V L E +R V
Sbjct: 423 EQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQV 482
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 339
++ D+ ER + F+ G ++LI+T++ ARGIDV QVS+VINYDLP
Sbjct: 483 DVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 533
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 194 bits (494), Expect = 1e-49
Identities = 125/351 (35%), Positives = 193/351 (54%), Gaps = 18/351 (5%)
Query: 1 MSDGITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPII--- 57
M D + D+ +S + SF +L+LK E+L+ + F P+ IQ+ A LP++
Sbjct: 214 MKDVVVDVQRQDPKSPLYSIS-SFRELRLKPEVLKALDTMNFQFPTRIQETA-LPLLLME 271
Query: 58 EGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHM 117
+++AQAQSGTGKT F + L ID + PQ + LAPT ELA QI +VV + +
Sbjct: 272 PPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI 331
Query: 118 D-VKVHACIGGTSLQEDSEALRGGA---QIIVGTPGRVFDMIDR-RIFKTDNIKMFILDE 172
D +K+H I G ++ A+RG QI++GTPG D + + + I+ +LDE
Sbjct: 332 DNLKIHYAIKGGNMA----AMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDE 387
Query: 173 ADEMLS----TGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD 228
AD M+ T IYN+ + Q +L SAT V+ +K +K+ + +++K++
Sbjct: 388 ADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKRE 447
Query: 229 ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTV 288
E L I Q+YV KY + +LY ++V +VIFC+T+ V L E +R V
Sbjct: 448 EQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQV 507
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 339
++ D+ ER + F+ G ++LI+T++ ARGIDV QVS+VINYDLP
Sbjct: 508 DVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 558
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 194 bits (494), Expect = 1e-49
Identities = 125/351 (35%), Positives = 193/351 (54%), Gaps = 18/351 (5%)
Query: 1 MSDGITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPII--- 57
M D + D+ +S + SF +L+LK E+L+ + F P+ IQ+ A LP++
Sbjct: 598 MKDVVVDVQRQDPKSPLYSIS-SFRELRLKPEVLKALDTMNFQFPTRIQETA-LPLLLME 655
Query: 58 EGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHM 117
+++AQAQSGTGKT F + L ID + PQ + LAPT ELA QI +VV + +
Sbjct: 656 PPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI 715
Query: 118 D-VKVHACIGGTSLQEDSEALRGGA---QIIVGTPGRVFDMIDR-RIFKTDNIKMFILDE 172
D +K+H I G ++ A+RG QI++GTPG D + + + I+ +LDE
Sbjct: 716 DNLKIHYAIKGGNMA----AMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDE 771
Query: 173 ADEMLS----TGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD 228
AD M+ T IYN+ + Q +L SAT V+ +K +K+ + +++K++
Sbjct: 772 ADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKRE 831
Query: 229 ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTV 288
E L I Q+YV KY + +LY ++V +VIFC+T+ V L E +R V
Sbjct: 832 EQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQV 891
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 339
++ D+ ER + F+ G ++LI+T++ ARGIDV QVS+VINYDLP
Sbjct: 892 DVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 942
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 191 bits (484), Expect = 2e-48
Identities = 106/395 (26%), Positives = 204/395 (50%), Gaps = 26/395 (6%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
S+++ KL ELL+ + G+ +PS IQ AI ++ +DV+ A++G+GKT F + L
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 83 NI--------DEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDS 134
I + + + P +++APTRELA QI++ + A ++ +V + +GG S++E
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 433
Query: 135 EALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPP 194
+ G +I++ TPGR+ D ++RR + +LDEAD M+ GF+ Q+ + +P
Sbjct: 434 LKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPS 493
Query: 195 TS-----------------QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQ 237
++ + SATMP V + K++++PV + + T + I Q
Sbjct: 494 SNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQ 553
Query: 238 YYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQ 297
+ + ++E + K+ L L D + A++F NT++ + + + L + + V+ ++ Q
Sbjct: 554 HVIMMKESE-KFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQ 612
Query: 298 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXX 357
++R+ ++ FR+ +L++TD++ RGID+ V+ VINYD+P + E Y
Sbjct: 613 EQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGK 672
Query: 358 XXXXXNFVTNKDIGAMRELERFYSTQIEELPSSIS 392
+F+T D +L++ +P ++
Sbjct: 673 SGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELA 707
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 190 bits (482), Expect = 4e-48
Identities = 112/365 (30%), Positives = 193/365 (52%), Gaps = 2/365 (0%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF +L + + L G+++PS IQQ A+ ++GKDV+ A++G+GKTG F+I LQ
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 83 NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
++ + +A L+L PTRELA QI + AL + + +GG + + AL
Sbjct: 105 SLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164
Query: 143 IIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLL 201
IIV TPGR+ D ++ + F +K I+DEAD +L+ F+ ++ I ++P + L
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 202 SATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISV 261
SATM V ++ ++DP R+ V T++ + Q+Y+ V +YK L L + +
Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFV-PNKYKETYLVYLLNEHAG 283
Query: 262 TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLL 321
A++FC T ++ LR+ ++ + Q++R + +F+S + IL+ TD+
Sbjct: 284 NSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVA 343
Query: 322 ARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYS 381
ARG+D+ V +VINYD+PS ++Y VT D+ A +++E
Sbjct: 344 ARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLG 403
Query: 382 TQIEE 386
+++E
Sbjct: 404 KKLDE 408
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 190 bits (482), Expect = 4e-48
Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 11/372 (2%)
Query: 32 ELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAP 91
++L I GF +PS IQ +A +++G D++ AQ+GTGKT F + + + + + P
Sbjct: 293 DMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQ-STP 351
Query: 92 QG-------LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQII 144
+G L+LAPTRELALQI+ V + +K GG + L GA+II
Sbjct: 352 RGTRGGANVLVLAPTRELALQIEMEVKKYSFR-GMKAVCVYGGGNRNMQISDLERGAEII 410
Query: 145 VGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSAT 204
+ TPGR+ D+I + I +LDEAD ML GF+ QI + + P Q ++ SAT
Sbjct: 411 ICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSAT 470
Query: 205 MPGDVLEVTSKFMKDPVRILVKKDELTL-EGIGQYYVNVEEEQYKYDCLTDLYDSISVT- 262
P V + +MK+P+++ V +L + Q +E++ K++ +T ++S T
Sbjct: 471 WPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTD 530
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLA 322
+ +IFC + + ++L+ L + F I+ + Q +R+ + + +SG RIL++TD+ +
Sbjct: 531 KIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVAS 590
Query: 323 RGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYST 382
RG+D++ ++ VINYD P N E Y +F T +D +EL
Sbjct: 591 RGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQE 650
Query: 383 QIEELPSSISEL 394
+E+P + +
Sbjct: 651 AEQEVPDELHNM 662
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 189 bits (481), Expect = 5e-48
Identities = 116/378 (30%), Positives = 193/378 (50%), Gaps = 7/378 (1%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F+ L E+LR + GF P+ IQ + ++ +D++A A++G+GKT + I A
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 83 NI----DEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALR 138
+ ++ P LILAPTRELA QIQ + + GG + L
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 139 GGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV 198
GA I+V TPGR+ D+++ ++ + + +LDEAD ML GF+ QI I +PP Q
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILV-KKDELTLEGIGQYYVNVEEEQYKYDCLTDLYD 257
++ +AT P +V ++ S + +PV++ + + DEL YV V + K L +
Sbjct: 616 LMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR 675
Query: 258 SIS-VTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILI 316
S ++ +IFC+T+R + L R +F I+ D Q ERD ++ +FRSG S +LI
Sbjct: 676 SQERGSKVIIFCSTKRLCDHLA-RSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLI 734
Query: 317 STDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
+TD+ ARG+D++ + +VINYD P+ E+Y F T +D +L
Sbjct: 735 ATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDL 794
Query: 377 ERFYSTQIEELPSSISEL 394
+ +++P + ++
Sbjct: 795 IKVLEGANQQVPPQVRDI 812
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 187 bits (474), Expect = 3e-47
Identities = 117/366 (31%), Positives = 183/366 (49%), Gaps = 8/366 (2%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K V++F + ++ + F EP+ IQ + + G+D++ AQ+G+GKT + +
Sbjct: 89 KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLL 148
Query: 79 AALQNID-----EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
A+ +I+ E+ P L+LAPTRELA Q+Q+V +K GG
Sbjct: 149 PAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ 208
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
L G +I + TPGR+ D ++ +LDEAD ML GF+ QI I +
Sbjct: 209 IRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT 253
P Q ++ SAT P +V ++ F++D +I V EL+ V+V E K L
Sbjct: 269 PDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 328
Query: 254 DLYDSISV---TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
L + I + +IF T+R+ ++LT R+R + + I+ D Q ERD ++ EFRSG
Sbjct: 329 QLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSG 388
Query: 311 SSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDI 370
+ ILI+TD+ +RG+DV+ V VINYD P++ E+Y F T ++
Sbjct: 389 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL 448
Query: 371 GAMREL 376
REL
Sbjct: 449 KQAREL 454
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 186 bits (472), Expect = 5e-47
Identities = 124/391 (31%), Positives = 190/391 (47%), Gaps = 22/391 (5%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V F L LL+ I G+ +P+ +Q+ +I + G+D++A AQ+G+GKT F
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 81 LQNIDEKIKA------------------PQGLILAPTRELALQIQKVVMALAIHMDVKVH 122
L +K A P LILAPTREL QI + V+
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 123 ACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFK 182
A GG ++ + G ++ TPGR+ D+IDR NIK +LDEAD ML GF+
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE 347
Query: 183 EQIYNIFTMLPPTS----QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQY 238
QI +I TS Q ++ SAT P D+ + F+KD V + V + T E I Q
Sbjct: 348 PQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQK 407
Query: 239 YVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQ 298
V+VE+ + + L L+ +IF T+R + LT+ L +NF ++I+ D Q+
Sbjct: 408 VVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQR 467
Query: 299 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXX 358
ER+ ++ FRSG + I+++T + +RG+D+ V+ VINYDLP++ ++Y
Sbjct: 468 ERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 527
Query: 359 XXXXNFVTNKDIGAMRELERFYSTQIEELPS 389
F + G +EL +E PS
Sbjct: 528 GQAVAFFNRNNKGIAKELIELLQEANQECPS 558
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 186 bits (472), Expect = 5e-47
Identities = 115/382 (30%), Positives = 191/382 (49%), Gaps = 31/382 (8%)
Query: 26 DLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNID 85
DL + E+++ + G G + IQ+ + P +EG+D++ +A++GTGKT F I + I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 86 E------KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACI-GGTSLQEDSEALR 138
+ + K PQ L+LAPTRELA Q++K A +D C+ GGT + + L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDT---ICLYGGTPIGQQMRELN 236
Query: 139 GGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV 198
G + VGTPGR+ D++ R ++ +LDEAD+ML GF E + I LP Q
Sbjct: 237 YGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDS 258
++ SATMP + +T K++ +P LT++ +G + + Y D Y
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNP---------LTIDLVGDSDQKLADGITMYSIAADSYGR 347
Query: 259 ISVT-----------QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEF 307
S+ + ++F T+R + L L + ++ A++ D+ Q +R+ + F
Sbjct: 348 ASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGF 406
Query: 308 RSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTN 367
R G+ IL++TD+ ARG+DV V LVI+Y+LP+N E +
Sbjct: 407 RDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQ 466
Query: 368 KDIGAMRELERFYSTQIEELPS 389
A++ +E+ ++ ELPS
Sbjct: 467 DQTRAVKMIEKEVGSRFNELPS 488
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 186 bits (471), Expect = 7e-47
Identities = 115/366 (31%), Positives = 184/366 (49%), Gaps = 8/366 (2%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K V +F + ++ I F EP+AIQ + + G D++ AQ+G+GKT ++ +
Sbjct: 91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150
Query: 79 AALQNID-----EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
A+ +I+ E+ P L+LAPTRELA Q+Q+V +K GG
Sbjct: 151 PAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
L G +I + TPGR+ D ++ +LDEAD ML GF+ QI I +
Sbjct: 211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT 253
P Q ++ SAT P +V ++ F+KD + I + EL+ V+V + K + L
Sbjct: 271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLI 330
Query: 254 DLYDSI---SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
L + I + ++F T+R+ +ELT ++R + + I+ D QQERD ++ EF+ G
Sbjct: 331 RLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHG 390
Query: 311 SSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDI 370
+ ILI+TD+ +RG+DV+ V VINYD P++ E+Y F T +I
Sbjct: 391 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI 450
Query: 371 GAMREL 376
+ +L
Sbjct: 451 KQVSDL 456
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 184 bits (467), Expect = 2e-46
Identities = 119/391 (30%), Positives = 212/391 (53%), Gaps = 23/391 (5%)
Query: 24 FDDLKLKEELLRGIF-GYGFVEPSAIQQRAILPII---EGKDVLAQAQSGTGKTGTFSIA 79
F+DL L EL++G++ F +PS IQ + LP+I K ++AQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAIS-LPMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 80 ALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
L +D ++ PQ L + PTRELA Q +V+ + + + S + A RG
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPD-STRGAPAATRG 210
Query: 140 G---AQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQIYNIFT---ML 192
A +++GTPG + + + +++K+ + DEAD ML+T GF++ I +
Sbjct: 211 APVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRV 270
Query: 193 PPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCL 252
P QV+L SAT V + ++ +KDP ++ VK+++L L+ + QY V +EQ K + +
Sbjct: 271 NPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVI 330
Query: 253 TD-LYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGS 311
D + + + Q +IF T+ +++ + L E + V++++ +L + +RD I+KEF+
Sbjct: 331 KDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECL 390
Query: 312 SRILISTDLLARGIDVQQVSLVINYDLPSNKEN-------YXXXXXXXXXXXXXXXXXNF 364
+++LI+TD++ARG D Q+V+LV+NY+LP+ E Y N
Sbjct: 391 TQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNL 450
Query: 365 VTNK--DIGAMRELERFYSTQIEELPSSISE 393
+ + D M ++E+++ ++E+ S SE
Sbjct: 451 LLDDGWDKEVMEKIEKYFEANVKEIKSWNSE 481
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 184 bits (466), Expect = 3e-46
Identities = 121/410 (29%), Positives = 196/410 (47%), Gaps = 20/410 (4%)
Query: 3 DGITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDV 62
D DI + + + F L LL I F +P+ +Q+ ++ + G+D+
Sbjct: 123 DNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDL 182
Query: 63 LAQAQSGTGKTGTFSIAALQNIDEKIKAPQ---------------GLILAPTRELALQIQ 107
+A AQ+G+GKTG F L + +PQ +I+APTRELA QI
Sbjct: 183 MACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIF 242
Query: 108 KVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKM 167
VK GG+ + + G ++V TPGR+ D+++R N+K
Sbjct: 243 DEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKY 302
Query: 168 FILDEADEMLSTGFKEQIYNIFTMLPPTS----QVVLLSATMPGDVLEVTSKFMKDPVRI 223
+LDEAD ML GF+ QI +I T Q ++ SAT P D+ + F+ D + +
Sbjct: 303 LVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFL 362
Query: 224 LVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRE 283
V + T E I Q + VE + K L DL + + +IF T+R ++LT+ L
Sbjct: 363 SVGRVGSTSENITQKVLYVENQDKK-SALLDLLSASTDGLTLIFVETKRMADQLTDFLIM 421
Query: 284 NNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKE 343
NF +AI+ D Q ER+ + FRSG++ +L++T + ARG+D+ V+ VINYDLPS+ +
Sbjct: 422 QNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVD 481
Query: 344 NYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELPSSISE 393
+Y F +++ ++ L + +E+PS + +
Sbjct: 482 DYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLKD 531
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 184 bits (466), Expect = 3e-46
Identities = 116/378 (30%), Positives = 189/378 (49%), Gaps = 7/378 (1%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA-- 80
SF+ ELLR + GF P+ IQ ++ ++G+D++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 81 -LQNI-DEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALR 138
LQ I ++ P L+L+PTRELA QIQ+ + + GG L
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 139 GGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV 198
GA I+V TPGR+ D+++ R I +LDEAD ML GF+ QI I +P Q
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILV-KKDELTLEGIGQYYVNVEEEQYKYDCLTDLYD 257
++ +AT P V ++ + + +P ++ + DEL ++ V K L +
Sbjct: 339 LMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR 398
Query: 258 SISV-TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILI 316
S ++ +IFC+T+R ++LT L F +AI+ D Q ERD ++ +FRSG + +L+
Sbjct: 399 SQEPGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 317 STDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
+TD+ ARG+DV+ + V+NYD P+ E+Y F ++D +L
Sbjct: 458 ATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDL 517
Query: 377 ERFYSTQIEELPSSISEL 394
+ + +P I E+
Sbjct: 518 IKILEGANQRVPPQIREM 535
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 183 bits (465), Expect = 3e-46
Identities = 113/385 (29%), Positives = 191/385 (49%), Gaps = 31/385 (8%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+ +L + E+++ + G + IQ+ + P +EG+D++ +A++GTGKT F I +
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 83 NIDE------KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACI-GGTSLQEDSE 135
I + + + P L+LAPTRELA Q++K A +D C+ GGT + +
Sbjct: 165 KIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDT---ICLYGGTPIGQQMR 221
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
L G + VGTPGRV D++ R ++ +LDEAD+ML GF E + I LP
Sbjct: 222 QLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEK 281
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
Q ++ SATMP + +T K++ +P LT++ +G + + Y + D
Sbjct: 282 RQSMMFSATMPSWIRSLTKKYLNNP---------LTVDLVGDSDQKLADGITTYSIIADS 332
Query: 256 YDSISVT-----------QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIM 304
Y S+ + ++F T+R + L+ L +F A++ D+ Q +R+ +
Sbjct: 333 YGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTL 391
Query: 305 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNF 364
FR G IL++TD+ ARG+DV V L+I+Y+LP+N E +
Sbjct: 392 AGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILI 451
Query: 365 VTNKDIGAMRELERFYSTQIEELPS 389
+ A++ +ER ++ ELPS
Sbjct: 452 YSQDQSRAVKIIEREVGSRFTELPS 476
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 183 bits (465), Expect = 3e-46
Identities = 111/335 (33%), Positives = 181/335 (53%), Gaps = 10/335 (2%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ F ++ L + +++ I G+ P+AIQ + + G + + A++G+GKT + + A
Sbjct: 138 IQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPA 197
Query: 81 LQNID-----EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSE 135
+ +I+ ++ P L+LAPTRELA QIQ+V V+ GG
Sbjct: 198 IVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMR 257
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
L+ G +I++ TPGR+ D + +LDEAD ML GF+ QI I + + P
Sbjct: 258 DLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPD 317
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYD----C 251
Q ++ SAT P +V ++ F+ + ++I + EL+ + V+V +E K +
Sbjct: 318 RQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTL 377
Query: 252 LTDLYD-SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
L+D+YD S S + +IF T+R+V+ L +R AI+ D Q ERD +++EFRSG
Sbjct: 378 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 437
Query: 311 SSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
S IL++TD+ ARG+DV + VIN+D P N E+Y
Sbjct: 438 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDY 472
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 182 bits (463), Expect = 6e-46
Identities = 104/373 (27%), Positives = 191/373 (50%), Gaps = 2/373 (0%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F DL + + L G+ +P+ IQ AI ++G+D++ A++G+GKTG F++ L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 83 NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
+ E + L+L PTRELA QI + AL + V+ +GG S AL
Sbjct: 85 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 143 IIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLL 201
II+ TPGR+ D ++ + F +K ++DEAD +L+ F+ ++ I ++P + L
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204
Query: 202 SATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISV 261
SATM V ++ +K+PV+ V T+E + QYY+ + ++K L + + ++
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFI-PSKFKDTYLVYILNELAG 263
Query: 262 TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLL 321
+IFC+T + LR FT ++ + Q +R + +F++ + IL++TD+
Sbjct: 264 NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVA 323
Query: 322 ARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYS 381
+RG+D+ V +V+N+D+P++ ++Y FVT D+ + +E
Sbjct: 324 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
Query: 382 TQIEELPSSISEL 394
++ P+ E+
Sbjct: 384 KKLPGFPTQDDEV 396
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 182 bits (462), Expect = 8e-46
Identities = 103/329 (31%), Positives = 180/329 (54%), Gaps = 6/329 (1%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V +F+D +++ I + +P+AIQ +A+ ++ G+DV+ A++G+GKT F +
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286
Query: 81 LQNIDE-----KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSE 135
+ +I + + + P G+I APTRELA QI + ++V A GG S E +
Sbjct: 287 IVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFK 346
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
L+ G +I+V TPGR+ DM+ + +LDEAD M GF+ Q+ +I + P
Sbjct: 347 ELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPD 406
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTD- 254
Q +L SATMP V ++ + + DP+R+ V + + E I Q + + K L +
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEK 466
Query: 255 LYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
L I ++F + + V+E+ +L N+F V+A++ D Q R +++F+SG +
Sbjct: 467 LPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHV 526
Query: 315 LISTDLLARGIDVQQVSLVINYDLPSNKE 343
LI+TD+ ARG+D++ + V+NYD+ + +
Sbjct: 527 LIATDVAARGLDIKSLKTVVNYDIAKDMD 555
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 181 bits (460), Expect = 1e-45
Identities = 105/329 (31%), Positives = 176/329 (52%), Gaps = 6/329 (1%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF + L +L+G+ GF P+ IQ + I + GKD++ A +G+GKT F + L+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 83 NI---DEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
+ +K+ + LIL PTRELA+Q V +A D+ V CIGG SL+ + LR
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 140 GAQIIVGTPGRVFD-MIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV 198
I++ TPGR D M + + F +NI++ ++DEAD ML GF +++ I P + Q
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNV--EEEQYKYDCLTDLY 256
+L SATM V ++ + PVR+ V + T + + Q +V V + E + L L
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLC 499
Query: 257 DSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILI 316
+ + +IF ++ ++ + + I+ L Q++R +++FR G L+
Sbjct: 500 KELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLL 559
Query: 317 STDLLARGIDVQQVSLVINYDLPSNKENY 345
+TD+ +RGID++ + +VINY+ P+ E Y
Sbjct: 560 ATDVASRGIDIKGIEVVINYEAPATHEVY 588
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 181 bits (459), Expect = 2e-45
Identities = 112/384 (29%), Positives = 190/384 (49%), Gaps = 8/384 (2%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K V +F++ +L+ + GF P+ IQQ+A + G+D++ + +G+GKT ++ +
Sbjct: 119 KPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCL 178
Query: 79 AALQNIDEKIKAPQG-----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
A+ +I+ + G L+LAPTRELA+QIQ+ ++ GG
Sbjct: 179 PAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQ 238
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
L G +I + TPGR+ DM+D + +LDEAD ML GF+ QI I +
Sbjct: 239 IRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT 253
P Q V+ SAT P +V + ++ D +++ V +L + V V + K L
Sbjct: 299 PDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLG 358
Query: 254 DLYDSISV---TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
+ + + +IF T+R +++T LR++ + AI+ D Q ERD ++ EFR+G
Sbjct: 359 KDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTG 418
Query: 311 SSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDI 370
S I+++TD+ +RGIDV+ ++ V NYD P N E+Y + T+ +
Sbjct: 419 KSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNA 478
Query: 371 GAMRELERFYSTQIEELPSSISEL 394
REL S +++ + E+
Sbjct: 479 KQARELVSILSEAKQDIDPKLEEM 502
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 181 bits (459), Expect = 2e-45
Identities = 122/399 (30%), Positives = 204/399 (50%), Gaps = 23/399 (5%)
Query: 13 IQSTYDKV---VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
I+++ D V V +F ++ L E L I +V+P+ +Q+ AI ++EG+D++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 70 TGKTGTFSIAALQNI--DEKIKAPQG--------LILAPTRELALQIQKVVMALAIHMDV 119
+GKT F + I D+ ++ P+G +IL+PTRELA QI + V
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 120 KVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST 179
KV GGT + + L G I+V TPGR+ D+++R I+ LDEAD ML
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 180 GFKEQIYNIFTML--PPTS--QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGI 235
GF+ QI I + PP Q +L SAT P ++ + + F+ + + + V + + + I
Sbjct: 327 GFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLI 386
Query: 236 GQ---YYVNVEEEQYKYDCL-TDLYDSISVTQAV--IFCNTRRKVEELTERLRENNFTVS 289
Q + ++ ++ + D L + I QA+ +F T+R + L L N F +
Sbjct: 387 VQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPAT 446
Query: 290 AIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXX 349
+I+ D QQER+ +K F+SG + IL++TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 447 SIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 506
Query: 350 XXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELP 388
F + + R L +E+P
Sbjct: 507 GRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVP 545
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 181 bits (458), Expect = 2e-45
Identities = 110/368 (29%), Positives = 189/368 (50%), Gaps = 15/368 (4%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V +F++L+L LL G+ FV P+ IQ AI + D++ Q++SGTGKT + IA
Sbjct: 24 VKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAV 83
Query: 81 LQNIDEKIKAPQGLILAPTRELALQIQKVVMALA-IHMDVKVHACIGGTSLQEDSEALRG 139
+Q+ + I P +I+ PTRELA+Q+Q L D K A IGGT + +D + +
Sbjct: 84 VQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRM-N 142
Query: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQIYNIFTMLPPTSQV 198
+++I+GTPGR+ + + R+F +++ +LDEAD++ T + + + +P Q+
Sbjct: 143 ESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQI 202
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYV-------NVEEEQYKYDC 251
+ SAT ++ E +K M P+ I + L GI Q+ +VEE + K
Sbjct: 203 IACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQI 262
Query: 252 LTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGS 311
L +++ + QA+IF +++ + + L + I ++Q ER + + +R+ +
Sbjct: 263 LGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFT 322
Query: 312 SRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIG 371
RIL++TDL+ARG+D +LVIN D P + Y F+ +K
Sbjct: 323 MRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASK--- 379
Query: 372 AMRELERF 379
+E +RF
Sbjct: 380 --KESQRF 385
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 180 bits (456), Expect = 4e-45
Identities = 99/332 (29%), Positives = 179/332 (53%), Gaps = 9/332 (2%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ F L++ ++ + G+ P+ IQ+ +I I G+D++A AQ+G+GKT F +
Sbjct: 244 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPI 303
Query: 81 LQNIDE-----KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSE 135
L + E ++ PQ +I++PTRELA+QI A +K+ GGTS + +E
Sbjct: 304 LSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE 363
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFT--MLP 193
+ G +++ TPGR+ D +DR ++ + +LDEAD ML GF E + I T +
Sbjct: 364 CITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR 423
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT 253
P Q ++ SAT P ++ + +F+K+ V + + + Q V + + +
Sbjct: 424 PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 483
Query: 254 DLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSR 313
L + T ++F T+R + L L E F ++I+ D Q +R+ +++F++GS +
Sbjct: 484 ILSEQADGT--IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 541
Query: 314 ILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+LI+T + +RG+D++ + VINYD+PS ++Y
Sbjct: 542 VLIATSVASRGLDIKNIKHVINYDMPSKIDDY 573
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 178 bits (452), Expect = 1e-44
Identities = 108/326 (33%), Positives = 186/326 (56%), Gaps = 21/326 (6%)
Query: 20 VVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIA 79
V F D+ L +ELL+ I+ GF +PS IQ+ AI I+ G +V+ Q++SGTGKT ++
Sbjct: 49 VAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCG 108
Query: 80 ALQNIDEKI-KAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALR 138
L N KI + Q +++ PTREL+ Q+ +V+ LA + +KV + + E
Sbjct: 109 VLGNT--KIGERTQVMVVTPTRELSTQVTEVISGLAGPLGIKVFSALKNKITDSIGE--- 163
Query: 139 GGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFK-EQIYNIFTMLPPTSQ 197
+++VG+PG + +++ +KM +LDEAD +L Q + I ++ +Q
Sbjct: 164 ---EVVVGSPGTILKLMELGKLNYKGVKMIVLDEADILLDKDMMGTQTFRILKLISG-AQ 219
Query: 198 VVLLSATMPGDVLEVTSKFMKDPVRILV----KKDELTLEGIGQYYVNVEEEQYKYDCLT 253
++ SAT V + + D V++ K DE+ L +Y+ E E K L
Sbjct: 220 MIFFSATFSEQVKQTIEFYAPDAVKMYEERNGKPDEIKL-----FYIEAEGEN-KRRALK 273
Query: 254 DLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSR 313
LY+ +S++Q +IF +T+ V L ++L ++ +VS ++ DL+ +ER+ + +FRS S+
Sbjct: 274 SLYEYLSISQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSK 333
Query: 314 ILISTDLLARGIDVQQVSLVINYDLP 339
IL++TD+ +RG+D+ QV+L++NYDLP
Sbjct: 334 ILLTTDVFSRGMDIPQVNLIVNYDLP 359
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 176 bits (447), Expect = 4e-44
Identities = 119/397 (29%), Positives = 195/397 (48%), Gaps = 24/397 (6%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ SF D+++ E ++ I + P+ +Q+ AI I E +D++A AQ+G+GKT F +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238
Query: 81 LQNI-----DEKIKA-------------PQGLILAPTRELALQIQKVVMALAIHMDVKVH 122
L I E ++A P L+LAPTRELA+QI + + V+
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298
Query: 123 ACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFK 182
GG + + L G ++V TPGR+ DM++R D K +LDEAD ML GF+
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358
Query: 183 EQIYNIFTM--LPPTS--QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQY 238
QI I +PP ++ SAT P ++ + F+ + + + V + T E I Q
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418
Query: 239 YVNVEEEQYKYDCLTDLYDSISVTQ-AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQ 297
V VEE K L DL ++ ++F T++ + L + L + ++I+ D Q
Sbjct: 419 VVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 477
Query: 298 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXX 357
++R+ + +FRSG S IL++T + ARG+D+ V VIN+DLPS+ E Y
Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 537
Query: 358 XXXXXNFVTNKDIGAMRELERFYSTQIEELPSSISEL 394
+F ++I ++L +E+PS + +
Sbjct: 538 LGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 574
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 176 bits (446), Expect = 5e-44
Identities = 118/382 (30%), Positives = 188/382 (48%), Gaps = 19/382 (4%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V +F D+ L + L I +V P+ +Q+ AI ++ +D++A AQ+G+GKT F
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 81 LQNI--DEKIKAPQG--------LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSL 130
+ I D+ ++ P+G +IL+PTRELA QI + VKV GGT +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 131 QEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFT 190
+ L G I+V TPGR+ D+++R I+ LDEAD ML GF+ QI I
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Query: 191 M--LPP--TSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ 246
+PP Q +L SAT P + + + FM + + + V + + + I Q V +E
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQ-RVEFVQES 388
Query: 247 YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKE 306
K L DL + TQ T+R + L L N F ++I+ D QQER+ ++
Sbjct: 389 DKRSHLMDLLHAQRETQD----KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRS 444
Query: 307 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVT 366
F++G + IL++TD+ ARG+D+ V+ V+N+DLP++ ++Y F
Sbjct: 445 FKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFN 504
Query: 367 NKDIGAMRELERFYSTQIEELP 388
+ R L +E+P
Sbjct: 505 ENNAQLARSLAELMQEANQEVP 526
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 176 bits (445), Expect = 7e-44
Identities = 117/393 (29%), Positives = 193/393 (48%), Gaps = 20/393 (5%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ F L E L+ I F +P+ +Q+ +I + +G+D++A AQ+G+GKTG F
Sbjct: 153 ILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPL 212
Query: 81 LQN--------IDEKIKA-------PQGLILAPTRELALQIQKVVMALAIHMDVKVHACI 125
+ EK ++ P L+LAPTRELA QI + V+
Sbjct: 213 FTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVY 272
Query: 126 GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQI 185
GG + + G ++V TPGR+ D+++R NIK +LDEAD ML GF+ QI
Sbjct: 273 GGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQI 332
Query: 186 YNIFTMLPPTS----QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVN 241
+I S Q ++ SAT P D+ + F+ + + + V + T E I Q +
Sbjct: 333 RHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILY 392
Query: 242 VEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERD 301
V++ K L DL + +IF T+R ++LT+ L NF +AI+ D Q ER+
Sbjct: 393 VDDMDKK-SALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERE 451
Query: 302 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXX 361
+ F++ + IL++T + ARG+D+ V+ VINYDLPS+ ++Y
Sbjct: 452 RALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVA 511
Query: 362 XNFVTNKDIGAMRELERFYSTQIEELPSSISEL 394
+F + + ++ L + +E+P+ +S+L
Sbjct: 512 TSFFNSNNQNIVKGLMEILNEANQEVPTFLSDL 544
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 176 bits (445), Expect = 7e-44
Identities = 120/397 (30%), Positives = 197/397 (49%), Gaps = 24/397 (6%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGK-DVLAQAQSGTGKTGTFSIA 79
+ +F D+ + E ++ I + P+ +Q+ AI PII+GK D++A AQ+G+GKT F +
Sbjct: 177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLP 235
Query: 80 ALQNI-----DEKIKA-------------PQGLILAPTRELALQIQKVVMALAIHMDVKV 121
L I E +KA P L+LAPTRELA+QI + + V+
Sbjct: 236 ILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRP 295
Query: 122 HACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGF 181
GG + + L G ++V TPGR+ DM++R D K +LDEAD ML GF
Sbjct: 296 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGF 355
Query: 182 KEQIYNIFTM--LPPTS--QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQ 237
+ QI I +PP ++ SAT P ++ + F+ + + + V + T E I Q
Sbjct: 356 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 415
Query: 238 YYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQ 297
V VE+ + L L + S + ++F T++ + L + L + ++I+ D Q
Sbjct: 416 KVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 475
Query: 298 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXX 357
++R+ + +FRSG S IL++T + ARG+D+ V VIN+DLPS+ E Y
Sbjct: 476 RDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGN 535
Query: 358 XXXXXNFVTNKDIGAMRELERFYSTQIEELPSSISEL 394
+F K++ ++L +E+PS + +
Sbjct: 536 LGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENM 572
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 176 bits (445), Expect = 7e-44
Identities = 113/375 (30%), Positives = 184/375 (48%), Gaps = 14/375 (3%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+ L L + I G+ P+ IQ++ + I+ G DV+A A++G+GKT F I L+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 84 IDEKIKAPQG----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
+ + + PQG LIL+PTR+LA Q K L D++V +GG S+++ E L
Sbjct: 90 LKQHV--PQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTK 147
Query: 140 GAQIIVGTPGRVFDM---IDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS 196
G +I+ TPGR+ + +D +T ++ + DEAD + GF EQ++ I T L
Sbjct: 148 GPDVIIATPGRLMHLLSEVDDMTLRT--VEYVVFDEADSLFGMGFAEQLHQILTQLSENR 205
Query: 197 QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLY 256
Q +L SAT+P + E +++P + + + + ++ V E+ KY L L
Sbjct: 206 QTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEE-KYSALLYLV 264
Query: 257 DS--ISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
S Q +IF +T+ VE + + N S Y D+ Q R + FR+ + +
Sbjct: 265 REHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTML 324
Query: 315 LISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMR 374
LI TD+ ARGID+ + VIN+D P + + +FVT +D+ M
Sbjct: 325 LIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYML 384
Query: 375 ELERFYSTQIEELPS 389
+L F S + P+
Sbjct: 385 DLHLFLSKPVRPAPT 399
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 175 bits (444), Expect = 9e-44
Identities = 104/360 (28%), Positives = 187/360 (51%), Gaps = 13/360 (3%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K V S+ L + + I G+ +P++IQ +AI I G+DV+ A++G+GKT F +
Sbjct: 415 KPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLL 474
Query: 79 AALQNIDEKI-----KAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
++I ++ + P +I+ PTRELA+QI + ++++ GG +++
Sbjct: 475 PMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQ 534
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKM---FILDEADEMLSTGFKEQIYNIFT 190
L+ GA+I+V TPGR+ D++ + N+ +LDEAD M GF+ Q+ I
Sbjct: 535 IADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIIN 594
Query: 191 MLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY- 249
+ P Q VL SAT P + + K +K PV I V + + Q V V E+ K+
Sbjct: 595 NIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQI-VEVRPEESKFS 653
Query: 250 ---DCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKE 306
+ L +LY++ + ++F + + + L L + +T ++I+ Q +RD+ + +
Sbjct: 654 RLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISD 713
Query: 307 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVT 366
+++G +LI+T ++ARG+DV+ + LV+NYD P++ E+Y F+T
Sbjct: 714 YKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 175 bits (444), Expect = 9e-44
Identities = 117/385 (30%), Positives = 191/385 (49%), Gaps = 12/385 (3%)
Query: 23 SFDD-LKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKT------GT 75
+FDD + E++ I GF +P+ IQ +A +++G D++ AQ+GTGKT G
Sbjct: 242 TFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF 301
Query: 76 FSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSE 135
+ ++ + P L+L PTRELALQ++ + + ++ GG + E E
Sbjct: 302 IHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIE 360
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
L+ G II+ TPGR+ D+ NI +LDEAD+ML GF+ QI I + P
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
Q V+ SAT P V + ++K+P+ + V +L + + V E+ K+ +
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTF 480
Query: 256 YDSISVTQAVIFCNTRRKV-EELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
S+S T VI +R+ V + L+ L N +V +++ D +Q++R+ ++ F++G RI
Sbjct: 481 LQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540
Query: 315 LISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMR 374
LI+TDL +RG+DV V+ V N+D P N E Y +T D
Sbjct: 541 LIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVAS 600
Query: 375 ELERFYSTQIEELPS---SISELFD 396
EL + +P S++E F+
Sbjct: 601 ELINILERANQSIPEELVSMAERFE 625
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 174 bits (442), Expect = 2e-43
Identities = 112/395 (28%), Positives = 187/395 (46%), Gaps = 38/395 (9%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F + L + LLR IF GF P+ IQ++ I ++EG+DV+ A++G+GKT F I ++
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 83 NIDEKI--KAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGG 140
++ + + LIL+P RELALQ KVV + D++ A +GG SL+E L G
Sbjct: 130 HLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 141 AQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVL 200
I+V TPGR + + +I+ + DEAD + GF Q+ I LP + Q +L
Sbjct: 190 PDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 249
Query: 201 LSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI- 259
SAT+P +++ ++DPV + + + + + +V+ + + L L D I
Sbjct: 250 FSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIK 309
Query: 260 -----------------------------------SVTQAVIFCNTRRKVEELTERLREN 284
S ++F T+ VE ++E L +
Sbjct: 310 LPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQA 369
Query: 285 NFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKEN 344
++VS IY L Q+ R + FR G + +L+ TD+ +RGID+ ++ VINYD P +
Sbjct: 370 GYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKV 429
Query: 345 YXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
+ + V +D G + +L+ F
Sbjct: 430 FVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLF 464
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 174 bits (441), Expect = 2e-43
Identities = 101/356 (28%), Positives = 185/356 (51%), Gaps = 8/356 (2%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K + S+ + ++L + +G+ +P+ IQ +AI I+ G+D++ A++G+GKT F +
Sbjct: 369 KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Query: 79 AALQNID-----EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
++I E+ + P +I+ PTRELALQI K + + ++V GGT + E
Sbjct: 429 PMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQ 488
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMF---ILDEADEMLSTGFKEQIYNIFT 190
L+ GA+IIV TPGR+ DM+ + N++ +LDEAD M GF+ Q+ I
Sbjct: 489 IAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD 548
Query: 191 MLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYD 250
+ P Q V+ SAT P + + + + P+ + V + + Q + +EEE+
Sbjct: 549 NVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLK 608
Query: 251 CLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
L L +IF + + + L + L ++ +++ + Q +RD+I+ +F++G
Sbjct: 609 LLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNG 668
Query: 311 SSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVT 366
+ ++L++T + ARG+DV+ + LV+NY P++ E+Y F+T
Sbjct: 669 TCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFIT 724
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 174 bits (441), Expect = 2e-43
Identities = 109/367 (29%), Positives = 191/367 (51%), Gaps = 10/367 (2%)
Query: 40 YGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG-----L 94
+ + +P++IQ +AI I+ G+DV+ A++G+GKT F + ++I ++ + +G +
Sbjct: 322 FEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAV 381
Query: 95 ILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDM 154
ILAPTRELA+Q K A + +KV GG + E L+ GA+I+V TPGR+ D+
Sbjct: 382 ILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDV 441
Query: 155 IDRRIFKTDNIK---MFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLE 211
+ K N++ +LDEAD M GF+ QI + + P Q VL SAT P +
Sbjct: 442 LAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEA 501
Query: 212 VTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTR 271
+ K + PV ILV + I Q V E Q L L +++F + +
Sbjct: 502 LARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQ 561
Query: 272 RKVEELTERLRENNF-TVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 330
K +++ ++L + +V+ ++ + Q +RD+ + +F++G ++L++T + ARG+DV+ +
Sbjct: 562 EKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNL 621
Query: 331 SLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMR-ELERFYSTQIEELPS 389
LV+NYD P++ E+Y FV + M E+ R + T + P+
Sbjct: 622 ILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGCKPPA 681
Query: 390 SISELFD 396
+ +F+
Sbjct: 682 DLKAMFE 688
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 174 bits (441), Expect = 2e-43
Identities = 109/367 (29%), Positives = 191/367 (51%), Gaps = 10/367 (2%)
Query: 40 YGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG-----L 94
+ + +P++IQ +AI I+ G+DV+ A++G+GKT F + ++I ++ + +G +
Sbjct: 322 FEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAV 381
Query: 95 ILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDM 154
ILAPTRELA+Q K A + +KV GG + E L+ GA+I+V TPGR+ D+
Sbjct: 382 ILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDV 441
Query: 155 IDRRIFKTDNIK---MFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLE 211
+ K N++ +LDEAD M GF+ QI + + P Q VL SAT P +
Sbjct: 442 LAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEA 501
Query: 212 VTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTR 271
+ K + PV ILV + I Q V E Q L L +++F + +
Sbjct: 502 LARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQ 561
Query: 272 RKVEELTERLRENNF-TVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 330
K +++ ++L + +V+ ++ + Q +RD+ + +F++G ++L++T + ARG+DV+ +
Sbjct: 562 EKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNL 621
Query: 331 SLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMR-ELERFYSTQIEELPS 389
LV+NYD P++ E+Y FV + M E+ R + T + P+
Sbjct: 622 ILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGCKPPA 681
Query: 390 SISELFD 396
+ +F+
Sbjct: 682 DLKAMFE 688
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 174 bits (440), Expect = 3e-43
Identities = 106/363 (29%), Positives = 183/363 (50%), Gaps = 2/363 (0%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
++ DL L E L + + PS IQ+ AI ++GKDV+ A++G+GKTG F++ L
Sbjct: 62 TWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH 121
Query: 83 NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
+ E + L+L PTRELA QI + AL + +K +GG + L
Sbjct: 122 ALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181
Query: 143 IIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLL 201
II+ TPGR+ D ++ + F IK ++DEAD +L+ F+ ++ I +LP + L
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241
Query: 202 SATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISV 261
SATM V ++ +KDPV++ V T+E + Q Y+ + +YK L + + ++
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFI-PVKYKDVYLVHILNELAG 300
Query: 262 TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLL 321
+IFC+T + LR ++ + Q +R + +F++ + ILISTD+
Sbjct: 301 NSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVA 360
Query: 322 ARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYS 381
+RG+D+ V +V+N+D+P++ ++Y V+ DI + +E
Sbjct: 361 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLG 420
Query: 382 TQI 384
Q+
Sbjct: 421 KQL 423
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 173 bits (439), Expect = 4e-43
Identities = 102/366 (27%), Positives = 183/366 (49%), Gaps = 7/366 (1%)
Query: 35 RGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNI----DEKIKA 90
R ++ GF PS IQ ++ ++ +D++A A++G+GKT + I ++ ++
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 91 PQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGR 150
P L+L+PTRELA QIQ + + GG + + G I+V TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 151 VFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVL 210
+ D+++ + + +LDEAD ML GF+ QI I +P Q ++ +AT P +V
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVR 421
Query: 211 EVTSKFMKDPVRILV-KKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISV-TQAVIFC 268
++ + + +P ++ + DEL + V K+ L + S ++ +IFC
Sbjct: 422 KIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFC 481
Query: 269 NTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 328
+T+R ++L L F +AI+ D Q ERD ++ +FRSG + +L++TD+ ARG+DV+
Sbjct: 482 STKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVK 540
Query: 329 QVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELP 388
+ +V+NYD P+ E+Y F ++D +L + +++P
Sbjct: 541 DIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVP 600
Query: 389 SSISEL 394
+ E+
Sbjct: 601 PQVREM 606
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 172 bits (437), Expect = 6e-43
Identities = 101/332 (30%), Positives = 181/332 (54%), Gaps = 9/332 (2%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F+ L L +L+G+ G+V+PS IQ I + GKD++A A +G+GKT F I ++
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291
Query: 83 NI---DEKIKAPQGLILAPTRELALQIQKVVMALAIHMD-VKVHACIGGTSLQEDSEALR 138
+ KI + + ++L PTRELA+Q+ V +A + + +GG +L++ + L+
Sbjct: 292 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 351
Query: 139 GGAQIIVGTPGRVFDMI-DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQ 197
I++ TPGR D I + F D++++ ++DEAD ML GF++++ I +LP Q
Sbjct: 352 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 411
Query: 198 VVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQY-KYDCLTDLY 256
+L SATM + + S +K PVRI++ + + Q +V + + + K L +L
Sbjct: 412 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 471
Query: 257 DSISVT---QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSR 313
+ T + V+F + L + +V ++ L Q++R + +F++
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 531
Query: 314 ILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+LI TDL +RG+D+ ++ +VINYD+P + E Y
Sbjct: 532 VLICTDLASRGLDIPKIEVVINYDMPKSYEIY 563
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 172 bits (437), Expect = 6e-43
Identities = 114/390 (29%), Positives = 197/390 (50%), Gaps = 16/390 (4%)
Query: 18 DKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFS 77
++VV +F +L ++EEL++ G+ PS IQ A+ +EGKDV+ AQ+G+GKTG F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 78 IAALQNIDEKIKAPQ------------GLILAPTRELALQIQKVVMALAIHMDVKVHACI 125
I LQ + E + + +L+PTRELA+QI + AL + ++ +
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLV 124
Query: 126 GGTSLQEDSEALRGGAQIIVGTPGRVFD-MIDRRIFKTDNIKMFILDEADEMLSTGFKEQ 184
GG + + AL G + V TPGR++D M D + F ++K +LDEAD +L+ F++
Sbjct: 125 GGIDRMQQTIAL--GKRPHVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKS 182
Query: 185 IYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEE 244
+ I +P + L SATM V ++ +++PV+I T++ + Q Y V
Sbjct: 183 LNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAA 242
Query: 245 EQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIM 304
+ YK L + + + ++IF T L LR F I + Q +R +
Sbjct: 243 K-YKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGAL 301
Query: 305 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNF 364
+F++G IL+ TD+ +RG+D+ V +VINYD+P+N ++Y +
Sbjct: 302 NKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISL 361
Query: 365 VTNKDIGAMRELERFYSTQIEELPSSISEL 394
V ++ ++E+ ++ E P+ E+
Sbjct: 362 VNQYELEWYIQIEKLIGKKLPEYPAEEDEV 391
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 172 bits (437), Expect = 6e-43
Identities = 117/400 (29%), Positives = 195/400 (48%), Gaps = 25/400 (6%)
Query: 13 IQSTYDKV---VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
I+++ D V V +F ++ L E L I +V+P+ +Q+ AI + G+D++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 70 TGKTGTFSIAALQNI--DEKIKAPQGL--------ILAPTRELALQIQKVVMALAIHMDV 119
+GKT F + I D+ I+ P+G+ IL+PTRELA QI + V
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 120 KVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST 179
KV GGT + + L G I+V TPGR+ D+++R ++ LDEAD ML
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313
Query: 180 GFKEQIYNIFTML----PPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGI 235
GF+ QI I + P Q +L SAT P ++ + S F+ + + + V + + + I
Sbjct: 314 GFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLI 373
Query: 236 GQYYVNVEEEQYKYDCLTDLY-------DSISVTQAVIFCNTRRKVEELTERLRENNFTV 288
Q V + K L DL + ++F T++ + L L N F
Sbjct: 374 VQ-RVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPA 432
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXX 348
+ I+ D QQER+ ++ F++G + IL++TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 433 TTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 492
Query: 349 XXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELP 388
F + + + L +E+P
Sbjct: 493 IGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVP 532
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 172 bits (435), Expect = 1e-42
Identities = 104/356 (29%), Positives = 178/356 (49%), Gaps = 36/356 (10%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF+ + L ++L+ G G+ +P+ IQQ I + GKD+ A A +GTGKT F + L+
Sbjct: 149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 208
Query: 83 NIDEKIKAPQG------LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
+ I P+G L+L PTRELA+Q+ +V L+ + ++V C GG L+ A
Sbjct: 209 RM---IYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAA 265
Query: 137 LRGGAQIIVGTPGRVFDMI-------------------------DRRIFKTDNIKMFILD 171
LR G ++V TPGR+ D + R+I K N ++ +LD
Sbjct: 266 LRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLD 325
Query: 172 EADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELT 231
EAD ML F++Q+ + + Q +L SATM ++ E+ S ++ PV+I + ++ T
Sbjct: 326 EADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDT 385
Query: 232 LEGIGQYYVNVE--EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVS 289
+ Q ++ + E + + L T ++F T++ + + L V
Sbjct: 386 ALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVG 445
Query: 290 AIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ S L Q +R + +F+ +L+STDL +RG+D++ V VIN ++P + + Y
Sbjct: 446 QMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQY 501
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 171 bits (434), Expect = 1e-42
Identities = 117/376 (31%), Positives = 193/376 (51%), Gaps = 28/376 (7%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F + + EE ++ + G G IQ + P+ EGKD++AQA++GTGKT +F+I ++
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 83 NID------EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACI-GGTSLQEDSE 135
+ +K ++P+ L+LAPTRELA Q+ K + + V AC GGTS Q
Sbjct: 198 RLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSV---ACFYGGTSYQSQIN 254
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF-----T 190
+R G I+VGTPGR+ D + ++ +LDE D+ML GF EQ+ +I T
Sbjct: 255 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 314
Query: 191 MLPPTSQVVLLSATMPGDVLEVTSKFMK------DPVRILVKKDELTLEGIGQYYVNVEE 244
Q +L SAT P V +V K+MK D V + +K T+E + + +
Sbjct: 315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLA-IQCHWSQ 373
Query: 245 EQYKYDCLTDLYDSISVTQAVIFCNTRRKVEE--LTERLRENNFTVSAIYSDLQQQERDT 302
+ +Y S S +A+IFC T++ V E + +++N ++ D+ Q +R+
Sbjct: 374 RPAVIGDVLQVY-SGSEGRAIIFCETKKNVTEMAMNPHIKQN---AQCLHGDIAQSQREI 429
Query: 303 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXX 362
+K FR GS ++L++T++ ARG+D+ +V LVI P + E+Y
Sbjct: 430 TLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI 489
Query: 363 NFVTNKDIGAMRELER 378
F ++ G +R +E+
Sbjct: 490 CFYQPRERGQLRYVEQ 505
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 171 bits (433), Expect = 2e-42
Identities = 107/337 (31%), Positives = 177/337 (51%), Gaps = 7/337 (2%)
Query: 15 STYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTG 74
S YD+ + SF D+ L LL+ I GF +P+ IQ+ I + GKD+ A A +GTGKT
Sbjct: 212 SQYDENL-SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTA 270
Query: 75 TFSIAALQNIDEKIK-AP--QGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQ 131
F++ L+ + K + AP + L+L PTREL +Q+ V LA ++ +GG ++
Sbjct: 271 AFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVK 330
Query: 132 EDSEALRGGAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFT 190
ALR I++ TPGR+ D + F +I++ ILDEAD ML F+EQ+ I
Sbjct: 331 SQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 390
Query: 191 MLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNV--EEEQYK 248
M Q +L SATM +V ++ S +K+PVRI V + + Q ++ + E +
Sbjct: 391 MCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDR 450
Query: 249 YDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFR 308
+ L ++F T+++ + L V ++ +L Q +R ++ F+
Sbjct: 451 EAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFK 510
Query: 309 SGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
IL++TD+ ARG+D++ V VIN+ +P+ ++Y
Sbjct: 511 DEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHY 547
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 171 bits (433), Expect = 2e-42
Identities = 103/367 (28%), Positives = 190/367 (51%), Gaps = 9/367 (2%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F DL++ E L++ G P+ +Q++ I ++ G DV+A +Q+G+GKT F + + +
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
+ +K ++ L++APTREL+ QI + ++V +GG + + L +
Sbjct: 63 LLQKNRSFYCLVVAPTRELSSQIAECFNMFQA-TGLRVCLLVGGANFNVQANQLSKRPHV 121
Query: 144 IVGTPGRVFD-MIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
+VGTPGR+ + ++ + F+T+ ++ F+LDEAD F E + I L Q +L +
Sbjct: 122 VVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLLFT 181
Query: 203 ATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYD---SI 259
ATM ++ +++S +K P I + T+ + +YY+ V + +K L +L + +
Sbjct: 182 ATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMK-WKNSALVELLEMSQGM 240
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
SV V C T R + RL F A++ +L Q++R+ M+ F+ +L+ TD
Sbjct: 241 SVIVFVSMCVTARVMSLALARL---GFCSEALHGELSQEKREEAMRSFKESRFNVLVCTD 297
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
L +RG+D+ V LVIN+D+P + ++Y VT D+ ++++E
Sbjct: 298 LGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIEFT 357
Query: 380 YSTQIEE 386
++EE
Sbjct: 358 LEKKLEE 364
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 171 bits (433), Expect = 2e-42
Identities = 99/326 (30%), Positives = 181/326 (55%), Gaps = 11/326 (3%)
Query: 28 KLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEK 87
K + E+LR + GF +P+ IQ +AI I+ G+D++ A++G+GKT F + ++I ++
Sbjct: 519 KKEMEVLRRL---GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQ 575
Query: 88 IKAPQG-----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
G +I+APTREL +QI K + + + ++ GGT + E L+ GA+
Sbjct: 576 PSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAE 635
Query: 143 IIVGTPGRVFDMIDRRIFKTDNIKMF---ILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199
IIV TPGR+ DM+ + N++ +LDEAD M GF+ Q+ I + P Q V
Sbjct: 636 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 695
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
+ SAT P + + + +K P+ ++V + + + Q+ V + ++ + L L
Sbjct: 696 MFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQ 755
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
++F + + + L L + ++ +++ + Q +RD+ + +F+SG R+LI+T
Sbjct: 756 EAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATS 815
Query: 320 LLARGIDVQQVSLVINYDLPSNKENY 345
+ ARG+DV+ + LV+NYD+P++ E+Y
Sbjct: 816 VAARGLDVKDLILVVNYDVPNHYEDY 841
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 171 bits (432), Expect = 2e-42
Identities = 116/384 (30%), Positives = 186/384 (48%), Gaps = 16/384 (4%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ FD+L + +L G+ Y EP+ IQ ++ G+DV+ A++G+GKT F I A
Sbjct: 166 ILQFDELDVSAKLREGLKNYK--EPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPA 223
Query: 81 LQ---NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEAL 137
LQ + + P+ L+++PTRELA+Q + + +L ++K GG E + A
Sbjct: 224 LQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA 283
Query: 138 RGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP-PTS 196
+ A +I+GTPGR+ D+I+ + +LDEAD ML TGF++ I NI + P PT
Sbjct: 284 KN-ASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTR 342
Query: 197 ----QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTL-EGIGQYYVNVEEEQYKYDC 251
Q V SAT P V + + F+KDPV+I + DEL + I Q +++ + K
Sbjct: 343 NGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERM 402
Query: 252 LTDLY----DSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEF 307
L +L S ++ +K E + V I+ D+ Q R + +F
Sbjct: 403 LDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDF 462
Query: 308 RSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTN 367
+SG +L++TD+ ARG+D+ +V LVIN P E+Y F T
Sbjct: 463 KSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTP 522
Query: 368 KDIGAMRELERFYSTQIEELPSSI 391
+D EL +++P +
Sbjct: 523 QDKSHAGELVNVLRQAKQDIPEGL 546
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 170 bits (431), Expect = 3e-42
Identities = 100/328 (30%), Positives = 176/328 (53%), Gaps = 3/328 (0%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ F+ L E L + G+ P+ IQ + I + G+D+LA A +G+GKT F +
Sbjct: 202 IIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV 261
Query: 81 LQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMD-VKVHACIGGTSLQEDSEALRG 139
+ + K P LIL PTRELA+QI++ L + +K +GG L L+
Sbjct: 262 IMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQ 321
Query: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199
++I+ TPGR+ D+I + + +K+ ++DEAD ML GF++Q+ +I +P Q +
Sbjct: 322 HVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTI 381
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYD-S 258
L+SAT+P + ++ S+ + +PVRI+ + L + Q + VE+ K L D
Sbjct: 382 LVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKK 441
Query: 259 ISVTQAVIFCNTRRKVEELTERLRE-NNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIS 317
+ ++F + + + L+E +++ +I+S+ Q ER I+K G +++S
Sbjct: 442 LFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVS 501
Query: 318 TDLLARGIDVQQVSLVINYDLPSNKENY 345
T +L RG+D+ V LV+N+D+PS+ + Y
Sbjct: 502 TGVLGRGLDLISVRLVVNFDMPSSMDEY 529
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 170 bits (430), Expect = 4e-42
Identities = 110/382 (28%), Positives = 181/382 (46%), Gaps = 6/382 (1%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K V SF E+L++ + + +P+ IQ +A+ + G+D++ A++G+GKT F
Sbjct: 266 KPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIW 325
Query: 79 AALQNIDEKIK-----APQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
L ++ ++ + P GLILAPTREL+LQI ++ V C GG S E
Sbjct: 326 PMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQ 385
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
S+AL GA+IIV TPGR+ DM+ + + +LDEAD M GF+ Q+ +I +
Sbjct: 386 SKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVR 445
Query: 194 PTSQVVLLSATMPGDVLEVTSKFMKDPVRILV-KKDELTLEGIGQYYVNVEEEQYKYDCL 252
P Q ++ SAT + + + DPVRI+ +E + YV Q L
Sbjct: 446 PDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLL 505
Query: 253 TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
L +S +IF + E ++ L + ++ D+ Q +R+ ++ +F+
Sbjct: 506 CHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKEC 565
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGA 372
IL++TD+ ARG+D+ + V+NYD + E + VT+KD
Sbjct: 566 DILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEF 625
Query: 373 MRELERFYSTQIEELPSSISEL 394
L R + +P + EL
Sbjct: 626 AGHLVRNLEGADQLVPDDLMEL 647
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 169 bits (429), Expect = 5e-42
Identities = 108/379 (28%), Positives = 185/379 (48%), Gaps = 2/379 (0%)
Query: 9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQS 68
+ N S ++ +F +L + +EL GF P+ IQQ AI ++ +DV+ AQ+
Sbjct: 33 ENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQT 92
Query: 69 GTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGT 128
G+GKT F++ +Q + ++LAPTRELA QI + A+ + V+ +GG
Sbjct: 93 GSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGM 152
Query: 129 SLQEDSEALRGGAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYN 187
+ + AL ++V TPGR+ D ++ + F N+K I+DEAD +L F I
Sbjct: 153 DMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDK 212
Query: 188 IFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQY 247
I ++P + +L SATM V ++ + PVR+ V T++ + Q Y+ ++
Sbjct: 213 ILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYL-FFPFKH 271
Query: 248 KYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEF 307
K L L + ++ +IF T + L LR F+ ++ L Q R + +F
Sbjct: 272 KDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKF 331
Query: 308 RSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTN 367
+SG+ L++TD+ ARG+D+ V +VINYD+P++ + Y VT
Sbjct: 332 KSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQ 391
Query: 368 KDIGAMRELERFYSTQIEE 386
D+ +E +++E
Sbjct: 392 YDLEPFLRIEATIGKKMQE 410
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 169 bits (429), Expect = 5e-42
Identities = 104/393 (26%), Positives = 184/393 (46%), Gaps = 36/393 (9%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ S+ D L +L I G+ EP+ IQ++AI ++ +D++ A++G+GKT F I
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL 449
Query: 81 L---------QNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQ 131
L I+E + P +ILAPTRELA QI++ + + ++ A IGG S +
Sbjct: 450 LVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISRE 509
Query: 132 EDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTM 191
+ LR G +I++ TPGR+ D+++ R +LDEAD M+ GF+ + I
Sbjct: 510 DQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEH 569
Query: 192 LPPTS--------------------------QVVLLSATMPGDVLEVTSKFMKDPVRILV 225
+P ++ Q V+ +ATMP V + +++ P + +
Sbjct: 570 MPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYI 629
Query: 226 KKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENN 285
E + Q + E + + L L +IF N ++ + L + L +
Sbjct: 630 GSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFD-PPIIIFVNQKKGCDVLAKSLEKMG 688
Query: 286 FTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ ++ Q++R+ + ++G+ IL++TD+ RGID+Q VS+V+NYD+ N E+Y
Sbjct: 689 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 748
Query: 346 XXXXXXXXXXXXXXXXXNFVTNKDIGAMRELER 378
F+T +D EL++
Sbjct: 749 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQ 781
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 169 bits (429), Expect = 5e-42
Identities = 104/393 (26%), Positives = 184/393 (46%), Gaps = 36/393 (9%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ S+ D L +L I G+ EP+ IQ++AI ++ +D++ A++G+GKT F I
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPL 449
Query: 81 L---------QNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQ 131
L I+E + P +ILAPTRELA QI++ + + ++ A IGG S +
Sbjct: 450 LVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISRE 509
Query: 132 EDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTM 191
+ LR G +I++ TPGR+ D+++ R +LDEAD M+ GF+ + I
Sbjct: 510 DQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEH 569
Query: 192 LPPTS--------------------------QVVLLSATMPGDVLEVTSKFMKDPVRILV 225
+P ++ Q V+ +ATMP V + +++ P + +
Sbjct: 570 MPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYI 629
Query: 226 KKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENN 285
E + Q + E + + L L +IF N ++ + L + L +
Sbjct: 630 GSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFD-PPIIIFVNQKKGCDVLAKSLEKMG 688
Query: 286 FTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ ++ Q++R+ + ++G+ IL++TD+ RGID+Q VS+V+NYD+ N E+Y
Sbjct: 689 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 748
Query: 346 XXXXXXXXXXXXXXXXXNFVTNKDIGAMRELER 378
F+T +D EL++
Sbjct: 749 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQ 781
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 169 bits (429), Expect = 5e-42
Identities = 110/391 (28%), Positives = 192/391 (48%), Gaps = 20/391 (5%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F++ ++ + G+ +P+ +Q+ +I ++ +D+++ AQ+G+GKT F + +Q+
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 184
Query: 84 I----DEKIKAPQ-----------GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGT 128
I + +K P L+L+PTRELA+QI K + +++ GG
Sbjct: 185 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 244
Query: 129 SLQEDS-EALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYN 187
D LR G I++ TPGR+ D+I++ + +LDEAD ML GF+ QI
Sbjct: 245 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 304
Query: 188 IFTM-LPPTSQ--VVLLSATMPGDVLEVTSKFMKDP-VRILVKKDELTLEGIGQYYVNVE 243
I +PP + + SAT P ++ + F+KD + + V + T E I Q + V
Sbjct: 305 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVN 364
Query: 244 EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
E + + + + L + S ++F T+R EL L +I+ DL+Q ER+
Sbjct: 365 EMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERN 424
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN 363
++ FRSG IL++T + ARG+D+ V VINYDLP + + Y +
Sbjct: 425 LELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATS 484
Query: 364 FVTNKDIGAMRELERFYSTQIEELPSSISEL 394
F +K+ G R+L+ +E+P + ++
Sbjct: 485 FFNDKNRGIGRDLKNLIVESNQEVPEWLHQV 515
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 169 bits (429), Expect = 5e-42
Identities = 110/391 (28%), Positives = 192/391 (48%), Gaps = 20/391 (5%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F++ ++ + G+ +P+ +Q+ +I ++ +D+++ AQ+G+GKT F + +Q+
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 181
Query: 84 I----DEKIKAPQ-----------GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGT 128
I + +K P L+L+PTRELA+QI K + +++ GG
Sbjct: 182 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 241
Query: 129 SLQEDS-EALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYN 187
D LR G I++ TPGR+ D+I++ + +LDEAD ML GF+ QI
Sbjct: 242 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRK 301
Query: 188 IFTM-LPPTSQ--VVLLSATMPGDVLEVTSKFMKDP-VRILVKKDELTLEGIGQYYVNVE 243
I +PP + + SAT P ++ + F+KD + + V + T E I Q + V
Sbjct: 302 IVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVN 361
Query: 244 EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
E + + + + L + S ++F T+R EL L +I+ DL+Q ER+
Sbjct: 362 EMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERN 421
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN 363
++ FRSG IL++T + ARG+D+ V VINYDLP + + Y +
Sbjct: 422 LELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATS 481
Query: 364 FVTNKDIGAMRELERFYSTQIEELPSSISEL 394
F +K+ G R+L+ +E+P + ++
Sbjct: 482 FFNDKNRGIGRDLKNLIVESNQEVPEWLHQV 512
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 169 bits (428), Expect = 7e-42
Identities = 108/332 (32%), Positives = 176/332 (52%), Gaps = 12/332 (3%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SFD L L + I F +P+ IQ A ++ GKDV+ A++G+GKT F + A+
Sbjct: 115 SFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172
Query: 83 NI--DEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGG 140
++ D+K + Q L+++PTRELA QI ++ L + ++ GG E L+
Sbjct: 173 HLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK- 231
Query: 141 AQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS-QVV 199
+Q++V TPGR+ D++ + +LDEAD ML GF+E I NI + Q +
Sbjct: 232 SQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTL 291
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILV-KKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDS 258
+ +AT P +V E+ S FM +P+++ + D+LT V V + + K L +L
Sbjct: 292 MFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKK 351
Query: 259 ISV-----TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSR 313
+ +IF +++ + L+ N + V+AI+ DL QQ+R + EF+SG S
Sbjct: 352 YHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSN 411
Query: 314 ILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+L++TD+ ARG+D+ V VIN P E+Y
Sbjct: 412 LLLATDVAARGLDIPNVKTVINLTFPLTVEDY 443
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 169 bits (428), Expect = 7e-42
Identities = 96/286 (33%), Positives = 164/286 (56%), Gaps = 4/286 (1%)
Query: 61 DVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVK 120
D+L QA+SGTGKT FS+ A++N+D + Q +I+ PTRE+++QI++ V +A +
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVA-PTGAR 109
Query: 121 VHACIGGTSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST 179
+GG++ + + L+ QI++GTPGR+ ++ ++ F+LDEAD+++
Sbjct: 110 TSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDE 169
Query: 180 GFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYY 239
F++ I I LP QV + SAT P ++ + S F++D + D++ L GI QY
Sbjct: 170 VFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQYV 229
Query: 240 VNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQE 299
V + + LT + SI QA++FC+ K E + L+ + V+ + S + Q++
Sbjct: 230 --VAKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKD 287
Query: 300 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
R + + R+ +IL+S+DL ARGID V+LV+N D +N+E Y
Sbjct: 288 RQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETY 333
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 168 bits (425), Expect = 1e-41
Identities = 97/351 (27%), Positives = 188/351 (52%), Gaps = 28/351 (7%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTF------ 76
++++ L E+L+ + + EPS+IQ+ AI +++ KD++ A++G+GKT F
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 77 SIAALQNIDEKIK--APQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDS 134
+I+ L + E P ++LAPTRELA QIQ A + + + +GG + +E S
Sbjct: 310 AISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS 369
Query: 135 EALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPP 194
+ GA I+V TPGR+ D ++RR+F ++DEAD ML GF++ + I + LP
Sbjct: 370 FQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPS 429
Query: 195 TS-------------------QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGI 235
++ Q ++ SAT+P V + ++ +PV + + ++ +
Sbjct: 430 SNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRV 489
Query: 236 GQYYVNVEEEQYKYDCLTDLYDSISVT-QAVIFCNTRRKVEELTERLRENNFTVSAIYSD 294
Q + ++ K+ + ++ +S + +IF N +R +E + ++L + ++
Sbjct: 490 EQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGS 549
Query: 295 LQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
Q++R+ +++ R+ ++ IL++TD+ RGID+ VSLV+NY++ + E+Y
Sbjct: 550 KSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDY 600
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 167 bits (424), Expect = 2e-41
Identities = 104/362 (28%), Positives = 180/362 (48%), Gaps = 3/362 (0%)
Query: 18 DKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFS 77
D+ SF +L L EL++ + +P+ IQ +AI P +EG D++ AQ+G+GKT F+
Sbjct: 119 DESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFA 178
Query: 78 IAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEAL 137
I L + + ILAPTRELA QI++ +L M V+ +GG ++ + + L
Sbjct: 179 IPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDL 238
Query: 138 RGGAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS 196
II+ TPGR+ D ++ + F +K ++DEAD +L F + I ++P
Sbjct: 239 MRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQE 298
Query: 197 QVV-LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
+ L SATM + ++ + +PV+ V T++ + Q + V K L L
Sbjct: 299 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTYLIYL 357
Query: 256 YDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
+ +IF T+ E L+ F+ +A++ DL Q +R + F++G IL
Sbjct: 358 LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSIL 417
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRE 375
++TD+ ARG+D+ V +V+NYD+P + ++Y + V+ D+ +
Sbjct: 418 VATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 477
Query: 376 LE 377
+E
Sbjct: 478 IE 479
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 167 bits (423), Expect = 3e-41
Identities = 102/348 (29%), Positives = 175/348 (49%), Gaps = 13/348 (3%)
Query: 42 FVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKA---------PQ 92
F +PS IQ +++G+D++ A++G+GKT F I A+ ++ +K K P
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 93 GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVF 152
L+L+PTRELA+QI V+ +K GG+S A+R G I++GTPGR+
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 153 DMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEV 212
D+I+ + + ++ +LDEAD ML GF+E + I + Q+V+ SAT P DV ++
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 313
Query: 213 TSKFM-KDPVRILVKKDELTLEGIGQYYVNVEEEQ---YKYDCLTDLYDSISVTQAVIFC 268
+FM +P+++++ +L + V +E+ + L + Y + ++F
Sbjct: 314 AQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFA 373
Query: 269 NTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 328
+ + E L L++ + +I+ + Q ER + F+ GS +L++TD+ ARG+D+
Sbjct: 374 LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIP 433
Query: 329 QVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
V +VINY P E+Y F T + G EL
Sbjct: 434 DVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGEL 481
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 167 bits (422), Expect = 3e-41
Identities = 100/342 (29%), Positives = 171/342 (49%), Gaps = 22/342 (6%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ SF ++K + +L G+ G P+ IQ + + ++ G+D++ A +G+GKT F +
Sbjct: 176 IRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPV 235
Query: 81 LQNI--------DEKIKAPQGLILAPTRELALQIQKVVMALAIHMDV----KVHACI--G 126
+ E+ + P GLI+ P+RELA Q +++ + H+ ++ +C+ G
Sbjct: 236 IMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMG 295
Query: 127 GTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIY 186
G + E + + G I+V TPGR+ DM+D++I D + +DEAD M+ GF+E +
Sbjct: 296 GLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVR 355
Query: 187 NIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ 246
IF+ Q +L SATMP + + PV I V + + Q V++E
Sbjct: 356 TIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEA 415
Query: 247 ---YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
Y DCL + +IF ++ V+ + E L AI+ Q+ER
Sbjct: 416 KVVYLLDCLQK-----TAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRA 470
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ +R G +L++TD+ ++G+D V VINYD+P + ENY
Sbjct: 471 VDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENY 512
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 166 bits (420), Expect = 6e-41
Identities = 102/330 (30%), Positives = 176/330 (52%), Gaps = 8/330 (2%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+FD L L E+ I GF + IQ +I P++EGKDVL A++G+GKT F I A++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 83 NIDEKIKAPQG----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALR 138
+ ++ +P+ +++ PTRELA+Q + V L H V IGG + + +++ +
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 139 GGAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQ 197
G+ +++ TPGR+ D + + F ++K ++DEAD +L F+E + I +LP T Q
Sbjct: 210 SGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQ 269
Query: 198 VVLLSATMPGDVLEVTSKFMKDPVRILVK--KDELTLEGIGQYYVNVEEEQYKYDCLTDL 255
L SAT V ++ + PV + V + ++T EG+ Q Y V +Q ++ L
Sbjct: 270 TALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFL 329
Query: 256 YDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
+++ + ++F +T + V+ TE ++ ++ VS I+ + Q R +F IL
Sbjct: 330 KKNLN-KKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGIL 388
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ TD+ ARG+D+ V +I YD P Y
Sbjct: 389 LCTDVAARGLDIPSVDWIIQYDPPDKPTEY 418
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 165 bits (417), Expect = 1e-40
Identities = 116/381 (30%), Positives = 197/381 (51%), Gaps = 22/381 (5%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF DL + L+ + EP+ IQ+ I I+EG++ + A++G+GKT F AL
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF---ALP 64
Query: 83 NIDEKIKAPQG---LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
I++ K P G LIL PTRELA+QI + AL ++++K +GG + S L
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSK 124
Query: 140 GAQIIVGTPGRVFDMI----DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
++V TPGR+ D+I + I IK ++DEAD +LS F + + + F++LP +
Sbjct: 125 RPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPAS 184
Query: 196 S--QVVLLSATMPGDVLEV---TSKFMKDPVRIL-VKKDELTLEG-IGQYYVNVE---EE 245
Q +L +AT+ + ++ K K P+ + V+ D +++ + Q Y+ V E
Sbjct: 185 EDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVRE 244
Query: 246 QYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMK 305
Y LT + A+IF N R E + LR V+ ++S++ Q+ER +
Sbjct: 245 AYLVHLLT--IPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLG 302
Query: 306 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFV 365
FR+ +++IL++TD+ +RG+D+ V LVIN+DLP + ++Y + V
Sbjct: 303 RFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIV 362
Query: 366 TNKDIGAMRELERFYSTQIEE 386
T +D+ + +E T++ E
Sbjct: 363 TERDVDLVHAIEDRVGTKLSE 383
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 165 bits (417), Expect = 1e-40
Identities = 109/340 (32%), Positives = 180/340 (52%), Gaps = 22/340 (6%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F + + EE ++ + G G IQ + + GKD++AQA++GTGKT +F+I ++
Sbjct: 119 AFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 178
Query: 83 NIDEKI------KAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACI-GGTSLQEDSE 135
+ ++ +APQ L+LAPTRELA Q+ K + + V AC GGT E
Sbjct: 179 KLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSV---ACFYGGTPYGGQFE 235
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTML--- 192
+R G I+VGTPGR+ D I +K +LDE D+ML GF +Q+ I ++
Sbjct: 236 RMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKK 295
Query: 193 --PPTSQVVLLSATMPGDVLEVTSKFMK---DPVRILVKKDELTLEGIGQYYVNVEEEQY 247
Q +L SAT P V V K+MK + V ++ KK + T + + Q
Sbjct: 296 DSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQ- 354
Query: 248 KYDCLTDLYDSISVTQ--AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMK 305
+ + D+ S Q +IFC T+++ +EL++ +++ D+ Q++R+ +K
Sbjct: 355 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLK 413
Query: 306 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
FR+GS +L++T++ ARG+D+ +V LVI P + E+Y
Sbjct: 414 GFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESY 453
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 164 bits (416), Expect = 2e-40
Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 35/390 (8%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTF------ 76
++++ +E+ + + G++EP+ IQ++AI ++ +DV+ A++G+GKT F
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 77 ---SIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
S+ ++ + + P +I+APTRELA QI++ + +K + IGG S ++
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
LR G ++++ TPGR+ D+++ R + ILDEAD ML GF+ + + +P
Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481
Query: 194 PTS-------------------------QVVLLSATMPGDVLEVTSKFMKDPVRILVKKD 228
T+ Q V+ +ATM + + ++++ P + +
Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541
Query: 229 ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTV 288
E + Q V E++ K L ++ +S +IF N ++ + L++ L + F
Sbjct: 542 GKPTERVEQVVYMVPEDR-KRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKP 600
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXX 348
+ ++ Q +R+ ++ + G+S IL++TD+ RGIDV+ VSLV+NYD+ + E+Y
Sbjct: 601 TVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHR 660
Query: 349 XXXXXXXXXXXXXXNFVTNKDIGAMRELER 378
F+T D +L++
Sbjct: 661 IGRTGRAGKHGKAITFLTPDDTAVYFDLKQ 690
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 164 bits (416), Expect = 2e-40
Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 35/390 (8%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTF------ 76
++++ +E+ + + G++EP+ IQ++AI ++ +DV+ A++G+GKT F
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 77 ---SIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
S+ ++ + + P +I+APTRELA QI++ + +K + IGG S ++
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQ 421
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP 193
LR G ++++ TPGR+ D+++ R + ILDEAD ML GF+ + + +P
Sbjct: 422 GMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481
Query: 194 PTS-------------------------QVVLLSATMPGDVLEVTSKFMKDPVRILVKKD 228
T+ Q V+ +ATM + + ++++ P + +
Sbjct: 482 DTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA 541
Query: 229 ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTV 288
E + Q V E++ K L ++ +S +IF N ++ + L++ L + F
Sbjct: 542 GKPTERVEQVVYMVPEDR-KRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKP 600
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXX 348
+ ++ Q +R+ ++ + G+S IL++TD+ RGIDV+ VSLV+NYD+ + E+Y
Sbjct: 601 TVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHR 660
Query: 349 XXXXXXXXXXXXXXNFVTNKDIGAMRELER 378
F+T D +L++
Sbjct: 661 IGRTGRAGKHGKAITFLTPDDTAVYFDLKQ 690
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 164 bits (416), Expect = 2e-40
Identities = 106/360 (29%), Positives = 174/360 (47%), Gaps = 5/360 (1%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F + L EL++GI G+ P+ IQ++ I I+EG+DV+A A++G+GKT F I +
Sbjct: 97 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 156
Query: 84 ID--EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGA 141
+ E K + LIL+PTRELA+Q K + L M++K +GG S+ A+
Sbjct: 157 LQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCP 216
Query: 142 QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLL 201
+IV TPGR + K ++I+ + DEAD + GF EQ+ LP + Q V+
Sbjct: 217 DVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMF 276
Query: 202 SATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL--YDSI 259
SAT+P ++E + DPV I + + + + ++ + +Y L L Y
Sbjct: 277 SATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDD-RYTALVVLLKYVIP 335
Query: 260 SVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
+Q V+F T+ VE ++ L E + +++YS L R +F + +LI TD
Sbjct: 336 VQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTD 395
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
+ ARGID+ + V+N P + + + V+ D + +L F
Sbjct: 396 VAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLF 455
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 162 bits (411), Expect = 6e-40
Identities = 104/342 (30%), Positives = 168/342 (48%), Gaps = 22/342 (6%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ SF ++K +LRG+ G P+ IQ + I I+ G+D++ A +G+GKT F++
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 81 LQNIDEKIK--------APQGLILAPTRELALQIQKVVMALAIHMD------VKVHACIG 126
+ E+ K P GLI+ P+RELA Q ++ + ++ CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 127 GTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIY 186
G S++E E +R G ++V TPGR+ D++ +++ D + LDEAD M+ GF+ I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 187 NIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ 246
IF+ Q +L SATMP + + PV I V + + Q V+EE
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419
Query: 247 ---YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
Y +CL + +IF + V+ + E L AI+ Q+ER
Sbjct: 420 KMVYLLECLQK-----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 474
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
++ FR G +L++TD+ ++G+D + VINYD+P ENY
Sbjct: 475 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 516
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 162 bits (411), Expect = 6e-40
Identities = 108/359 (30%), Positives = 168/359 (46%), Gaps = 3/359 (0%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F + L + +GI G+ P+ IQ++ I I++GKDV+A A++G+GKT F + +
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 84 IDEKIK--APQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGA 141
+ + LIL+PTRELALQ K L +K +GG +++ AL
Sbjct: 158 LKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENP 217
Query: 142 QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLL 201
II+ TPGR+ + K +++ + DEAD + GF EQ+ I LP Q VL
Sbjct: 218 DIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLF 277
Query: 202 SATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI-S 260
SAT+P ++E + +PV I + D E + + V E+ L L++ +
Sbjct: 278 SATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRP 337
Query: 261 VTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDL 320
Q V+F T+ E LTE L + + IYS L R + +F G LI TDL
Sbjct: 338 QDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDL 397
Query: 321 LARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
ARG+D+ + VINY P+ + + + V +I + +L F
Sbjct: 398 AARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLF 456
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 161 bits (407), Expect = 2e-39
Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 27/374 (7%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F L L + L + +P+AIQ+ I I+EG+D + A++G+GKT F+ L
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
E G++L PTRELA+QI + AL M+++V +GG S+ + + L+
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 144 IVGTPGRVFDMI----DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS--Q 197
I+ TPGR+ I D + K +LDEAD +L++ F + + + LPP Q
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQ 183
Query: 198 VVLLSATMPGDVLEVTSK-----------FMKDPVRILVKKDELTLEGIGQYYVNVEE-- 244
+L +AT+ V + + + + V + L +E Y+ V E
Sbjct: 184 TLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIE-----YILVPEHV 238
Query: 245 -EQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
E Y Y LT + A+IF N E L L++ V++++S + QQER
Sbjct: 239 KEAYLYQLLT--CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNS 296
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN 363
+ FR+ ++RILI+TD+ +RG+D+ V LV+NYD+PS+ + + +
Sbjct: 297 LHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAIS 356
Query: 364 FVTNKDIGAMRELE 377
FVT +D+ ++ +E
Sbjct: 357 FVTQRDVSRIQAIE 370
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 160 bits (404), Expect = 4e-39
Identities = 97/203 (47%), Positives = 122/203 (59%), Gaps = 51/203 (25%)
Query: 143 IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
II+GTPGRV DM++ R IKMF+LDEADEMLS FK+QI +IF ML +QVVLLS
Sbjct: 62 IIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLNSNTQVVLLS 121
Query: 203 ATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVT 262
AT+P DVLEVT KFM+DP+RILVKK+ELTL+ ++ + +Q + D +
Sbjct: 122 ATIPSDVLEVTKKFMRDPIRILVKKEELTLKDFTVSAMHGDMDQKERDVV---------- 171
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLA 322
+RE +RSGSSR+LI+TDLL
Sbjct: 172 ------------------MRE-----------------------YRSGSSRVLITTDLLP 190
Query: 323 RGIDVQQVSLVINYDLPSNKENY 345
RGIDVQQ+SLVINYD P+N+ENY
Sbjct: 191 RGIDVQQLSLVINYDPPTNRENY 213
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 159 bits (403), Expect = 5e-39
Identities = 100/367 (27%), Positives = 181/367 (49%), Gaps = 8/367 (2%)
Query: 32 ELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNID------ 85
+LL+ I G V+P+ IQ +A I++G D++ AQ+GTGKT ++ + ++D
Sbjct: 232 DLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 291
Query: 86 EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIV 145
E+ P L+L PTRELAL ++ + + +K GG + E + G II+
Sbjct: 292 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIII 350
Query: 146 GTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATM 205
TPGR+ D+ +I ++DEAD+ML F+ QI I + P Q V+ SAT
Sbjct: 351 ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 410
Query: 206 PGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAV 265
P V ++ ++KDP+ + V L + + V E+ K + +++S V
Sbjct: 411 PDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKV 470
Query: 266 I-FCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARG 324
I F + + ++L+ + +++ + +Q +++ +++F+SG+ +ILI+TD+++RG
Sbjct: 471 IMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRG 530
Query: 325 IDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQI 384
+D+ V+ V NYD P N + Y +T +D EL +
Sbjct: 531 LDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRAN 590
Query: 385 EELPSSI 391
+ +P +
Sbjct: 591 QSVPEDL 597
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 159 bits (402), Expect = 7e-39
Identities = 107/388 (27%), Positives = 192/388 (48%), Gaps = 18/388 (4%)
Query: 23 SFDDLKLKEELLRGIFGY-GFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAAL 81
SF ++K + LL + G V P+AIQ + I + G+D++ A +G+GKT TF + +
Sbjct: 190 SFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249
Query: 82 QN-IDEKIK-------APQGLILAPTRELALQIQKVVMALAIHM------DVKVHACIGG 127
+++++K P GLI+ P+RELA QI +++ + + +++ CIGG
Sbjct: 250 MFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGG 309
Query: 128 TSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYN 187
+ E ++ +R G I+V TPGR+ DM+ ++I + + +LDEAD ML GF+++I +
Sbjct: 310 VPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKS 369
Query: 188 IFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQY 247
IF Q +L SATMP + + P+ + V + + Q V E
Sbjct: 370 IFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENK 429
Query: 248 KYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEF 307
L L + + +IF + V+ + E L V++I+ Q +R ++ F
Sbjct: 430 LVRVLECLQK--TSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAF 487
Query: 308 RSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTN 367
R +L++TD+ ++G+D Q + VIN+D+P + ENY F+
Sbjct: 488 RKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINK 547
Query: 368 K-DIGAMRELERFYSTQIEELPSSISEL 394
K ++ + +L++ + +ELP + L
Sbjct: 548 KSEMSVLSDLKQLLAEAGQELPEFLKML 575
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 159 bits (402), Expect = 7e-39
Identities = 105/394 (26%), Positives = 189/394 (47%), Gaps = 23/394 (5%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ +F D+K +L + G V+P+ IQ + + I+ G+D++ A +G+GKT F +
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 81 LQ-NIDEKI-------KAPQGLILAPTRELALQIQKVV------MALAIHMDVKVHACIG 126
+ + E++ + P GLI+ P+RELA Q +VV + A + ++ CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 127 GTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIY 186
G ++ E ++ G I+V TPGR+ DM+ ++ D + LDEAD ++ GF++ I
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324
Query: 187 NIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ 246
+F Q +L SATMP + + PV + V + + Q V++E
Sbjct: 325 EVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 384
Query: 247 ---YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
Y +CL + +IFC + V+++ E L AI+ Q++R+
Sbjct: 385 KIVYLLECLQKTSPPV-----LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYA 439
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN 363
+ F++G +L++TD+ ++G+D + VINYD+P+ ENY
Sbjct: 440 ISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATT 499
Query: 364 FVT-NKDIGAMRELERFYSTQIEELPSSISELFD 396
F+ N+ + +L+ + +P ++EL D
Sbjct: 500 FINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 533
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 158 bits (399), Expect = 2e-38
Identities = 104/333 (31%), Positives = 179/333 (53%), Gaps = 11/333 (3%)
Query: 23 SFDDLK--LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
SF LK + E LR I GF E + IQ +++ P+++G+D++ AQ+G+GKT F I A
Sbjct: 169 SFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 228
Query: 81 LQNIDEKIKAPQG----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
++ I++ P+ +I++PTREL++Q V+ L H +GG++ Q +SE
Sbjct: 229 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 288
Query: 137 LRGGAQIIVGTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
L G I+V TPGR+ D + F N++ I+DE D +L GF+E++ I +LP
Sbjct: 289 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 348
Query: 196 SQVVLLSATMPGDVLEVTSKFMK-DPVRILV--KKDELTLEGIGQYYVNVEEEQYKYDCL 252
Q +L SAT + ++ +K +P+ + V +D T++G+ Q Y+ E+
Sbjct: 349 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLF 408
Query: 253 TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
T L + + ++F ++ V+ E + V++I+ +Q +R T +F + S
Sbjct: 409 TFLKKNRK-KKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAES 467
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
IL+ TD+ ARG+D+ QV ++ YD P + Y
Sbjct: 468 GILLCTDVAARGLDIPQVDWIVQYDPPDDPREY 500
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 157 bits (396), Expect = 3e-38
Identities = 107/346 (30%), Positives = 169/346 (47%), Gaps = 11/346 (3%)
Query: 9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQS 68
+E +++ T +F+ L L + + I GF + IQ +AI P++ G+DVL A++
Sbjct: 141 EEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAART 200
Query: 69 GTGKTGTFSIAALQNIDEKIKAPQG----LILAPTRELALQIQKVVMALAIHMDVKVHAC 124
G+GKT F I A++ + P+ L++ PTRELA+Q V L + V
Sbjct: 201 GSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKV 260
Query: 125 IGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRR---IFKTDNIKMFILDEADEMLSTGF 181
IGG + ++E L G ++V TPGR+ D ++ IFK N+K ++DEAD +L F
Sbjct: 261 IGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFK--NLKFLVMDEADRILEQNF 318
Query: 182 KEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVK--KDELTLEGIGQYY 239
+E + I +LP T Q L SAT V ++ + PV I V + E+T EG+ Q Y
Sbjct: 319 EEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGY 378
Query: 240 VNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQE 299
V LT L + ++F +T + + E R F I + Q +
Sbjct: 379 CVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNK 438
Query: 300 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
R +F + IL+ T++ ARG+D V ++ YD P N +Y
Sbjct: 439 RTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDY 484
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 156 bits (395), Expect = 4e-38
Identities = 110/354 (31%), Positives = 186/354 (52%), Gaps = 16/354 (4%)
Query: 7 DIDENQIQSTYDKVVYSFDDLK-------LKEELLRGIFGYGFVEPSAIQQRAILPIIEG 59
D DE+++ S + +F+D + E L+ I GF + IQ ++I P++EG
Sbjct: 157 DEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEG 216
Query: 60 KDVLAQAQSGTGKTGTFSIAALQNIDE-KIKAPQG---LILAPTRELALQIQKVVMALAI 115
+D+LA A++G+GKT F I A++ I + + G LIL+PTRELA+Q V+ L
Sbjct: 217 RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGVLILSPTRELAMQTFGVLKELMT 276
Query: 116 HMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFD-MIDRRIFKTDNIKMFILDEAD 174
H +GG++ +++ L G IIV TPGR+ D M + F N++ ++DEAD
Sbjct: 277 HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 336
Query: 175 EMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTS-KFMKDPVRILVKKDE--LT 231
+L GF+E++ I +LP Q +L SAT V ++ K+P+ + V D+ T
Sbjct: 337 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANAT 396
Query: 232 LEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAI 291
++G+ Q YV E+ ++ L + ++F ++ V+ E L + V AI
Sbjct: 397 VDGLEQGYVVCPSEK-RFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAI 455
Query: 292 YSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ +Q +R T +F + S L+ TD+ ARG+D+ +V ++ YD P + + Y
Sbjct: 456 HGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 509
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 156 bits (394), Expect = 6e-38
Identities = 95/362 (26%), Positives = 175/362 (48%), Gaps = 6/362 (1%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF E+L+ I + +P+ IQ + + + G+D++ A++G+GKT F L
Sbjct: 135 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 194
Query: 83 NIDEKIK-----APQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEAL 137
+I ++ + P +I+ PTREL QI +++ A GG S+ E ++AL
Sbjct: 195 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 254
Query: 138 RGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQ 197
+ GA+I+V TPGR+ D + ++ + + DEAD M GF+ Q+ +I + + P Q
Sbjct: 255 QEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 314
Query: 198 VVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLT-DLY 256
+L SAT + ++ + DP+R++ E + Q + K++ LT L
Sbjct: 315 TLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLV 374
Query: 257 DSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILI 316
+ S ++F + EEL L++ + ++ D+ Q ER+ ++ +F+ +L+
Sbjct: 375 EFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 434
Query: 317 STDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
+TD+ ARG+D+ + VINYD+ + + + +T KD +L
Sbjct: 435 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 494
Query: 377 ER 378
R
Sbjct: 495 VR 496
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 156 bits (394), Expect = 6e-38
Identities = 103/392 (26%), Positives = 186/392 (47%), Gaps = 23/392 (5%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI-- 78
+ +F D+K LLR + G + P+ IQ + + ++ G+D++ A +G+GKT F +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 79 ---AALQNIDEKIKAPQG---LILAPTRELALQIQKVVMALAIHM------DVKVHACIG 126
A + I I A +G L++ P+RELA Q VV + ++ CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 127 GTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIY 186
G ++ + ++ G I+V TPGR+ D++ ++ D ++ LDEAD ++ GF++ I
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275
Query: 187 NIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ 246
++F Q +L SATMP + + + PV + V + + Q V++E
Sbjct: 276 HVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 335
Query: 247 ---YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
Y +CL + +IFC + V+++ E L AI+ Q++RD
Sbjct: 336 KIVYLLECLQK-----TTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYA 390
Query: 304 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN 363
+ F++G +L++TD+ ++G+D + VINYD+P ENY
Sbjct: 391 ISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATT 450
Query: 364 FVT-NKDIGAMRELERFYSTQIEELPSSISEL 394
F+ N+ + +L+ + +P ++EL
Sbjct: 451 FINKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 155 bits (393), Expect = 8e-38
Identities = 101/377 (26%), Positives = 190/377 (49%), Gaps = 10/377 (2%)
Query: 29 LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEK- 87
L ++L + + +P IQ +A+ I+ G+D + A++G+GKT F + L++I ++
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Query: 88 -IKA---PQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
++A P GL++APTREL QI + + + ++ GG+ + + L+ G +I
Sbjct: 596 PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEI 655
Query: 144 IVGTPGRVFDMIDRRIFKTDNIK---MFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVL 200
+V TPGR+ D++ K N++ ++DEAD M GF+ QI I + P Q VL
Sbjct: 656 VVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVL 715
Query: 201 LSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSIS 260
SAT P V + K + PV I V + + I Q V V E ++ L +L S
Sbjct: 716 FSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLELLGEWS 774
Query: 261 VT-QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTD 319
+ ++F ++ K + L + ++++ +++ Q +R++ + +F++ +LI+T
Sbjct: 775 EKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATS 834
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
+ ARG+DV+++ LV+N+D P++ E+Y F++ D +L +
Sbjct: 835 VAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKA 894
Query: 380 YSTQIEELPSSISELFD 396
+ +P + L D
Sbjct: 895 LELSEQPVPDDLKALAD 911
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 155 bits (393), Expect = 8e-38
Identities = 106/373 (28%), Positives = 185/373 (49%), Gaps = 15/373 (4%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F+ L L E + G +P+ +Q + I+ G+DVL AQ+G+GKT F++ L
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118
Query: 83 NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
+ E L++ PTRELA Q+ + AL ++++ +GG + + +L
Sbjct: 119 RLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPH 178
Query: 143 IIVGTPGRVFDMIDRR-----IFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQ 197
I++ TPGR+ +++ +F K +LDEAD +L GF++++ IF LP + Q
Sbjct: 179 IVITTPGRIKVLLENNPDVPPVF--SRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQ 236
Query: 198 VVLLSATMPGD---VLEVTSK--FMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCL 252
+L SATM + +LE +S + + L D LT + I + +E Y L
Sbjct: 237 TLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFI--FEDKDAKELYLVHIL 294
Query: 253 TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
+ + D + A+IF +T R + L+ L E A++S Q R + + +F+SG
Sbjct: 295 SQMEDK-GIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKV 353
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGA 372
IL++TD+ +RG+D+ V LVINYD+P + +Y + +T D+
Sbjct: 354 PILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKL 413
Query: 373 MRELERFYSTQIE 385
+ ++E ++E
Sbjct: 414 IHKIEEEVGKKME 426
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 155 bits (392), Expect = 1e-37
Identities = 120/380 (31%), Positives = 183/380 (47%), Gaps = 40/380 (10%)
Query: 3 DGITDIDE-------------NQIQSTYDKVVYS--FDDLKLKEELLRGIFGYGFVEPSA 47
+G +D+DE QI T D + FD L L+GI GF +
Sbjct: 46 EGKSDVDEPLIKKPASTTPLVTQIAKTSDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTV 105
Query: 48 IQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG-----------LIL 96
+Q+ + I++GKD+LA+A++GTGKT F L +I+ IKAP L++
Sbjct: 106 VQEATLPLILQGKDILAKAKTGTGKTVAF---LLPSIEAVIKAPPASRDNRHPPIIVLVV 162
Query: 97 APTRELALQIQ-KVVMALAIHMDVKVHACIGGTSLQEDSEAL-RGGAQIIVGTPGRVFDM 154
PTRELA Q + + L H + V IGGT L + L + QI+V TPGR+ D
Sbjct: 163 CPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDH 222
Query: 155 IDRRI-FKTD--NIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLE 211
ID F T +K+ +LDEAD +L GF+ +I I +P Q L SAT+ +V +
Sbjct: 223 IDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQ 282
Query: 212 VTSKFMK---DPVRILVKKDELTLEGIGQYYVNVEEEQY---KYDCLTDLYDSISVTQAV 265
+ +K + V + + T + + Q Y+ +++ Y L + +
Sbjct: 283 ICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVI 342
Query: 266 IFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGI 325
IFC T + + L + + V I+S Q R + EFR S IL+++D+ ARG+
Sbjct: 343 IFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGV 402
Query: 326 DVQQVSLVINYDLPSNKENY 345
D VSLV+ LPS++E Y
Sbjct: 403 DYPDVSLVVQMGLPSDREQY 422
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 155 bits (392), Expect = 1e-37
Identities = 94/359 (26%), Positives = 176/359 (48%), Gaps = 35/359 (9%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTF---- 76
+ S+++ +E++ I G+ EP+ IQ++AI ++ +D++ A++G+GKT F
Sbjct: 393 IRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPL 452
Query: 77 -----SIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQ 131
S+ ++ +++ + P +I+APTRELA QI++ + ++ +GG S +
Sbjct: 453 LSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSRE 512
Query: 132 EDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTM 191
E LR G +I++ TPGR+ D+++ R + +LDEAD M+ GF+ + I
Sbjct: 513 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 572
Query: 192 LPPTS-------------------------QVVLLSATMPGDVLEVTSKFMKDPVRILVK 226
+P T+ Q V+ +ATMP V + +++ P + +
Sbjct: 573 MPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIG 632
Query: 227 KDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNF 286
E Q + E + + L I +IF N ++ + L + L + +
Sbjct: 633 SVGKPTERTEQIVYMMGENDKRKKLMEILSRKID-PPVIIFVNQKKGADVLAKGLEKLGY 691
Query: 287 TVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
++ Q++R+ + +SG+ IL++TD+ RGID++ VSLVINYD+ E+Y
Sbjct: 692 NSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDY 750
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 155 bits (391), Expect = 1e-37
Identities = 97/332 (29%), Positives = 163/332 (48%), Gaps = 7/332 (2%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ SF + L L+R I G++ P+ IQ I + G+D+ A +GTGKT + +
Sbjct: 156 ITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPT 215
Query: 81 LQNIDEKIKAPQG----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
L+ + + + L+L PTREL Q+ +V L + V IGG ++
Sbjct: 216 LERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAV 275
Query: 137 LRGGAQIIVGTPGRVFDMIDRR-IFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
LR I++ TPGR+ D I F D+I++ ILDEAD ML F EQ+ I T
Sbjct: 276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQY--KYDCLT 253
Q +L SATM V ++ + + P+++ V ++ + Q ++ + E++ + L
Sbjct: 336 RQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILA 395
Query: 254 DLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSR 313
L ++F T+++ L L ++ +L QQ+R +K+F+
Sbjct: 396 SLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQID 455
Query: 314 ILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+LI+TD+ ARG+D+ V VIN+ +P E+Y
Sbjct: 456 VLIATDVAARGLDIVGVKTVINFVMPITTEHY 487
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 154 bits (388), Expect = 3e-37
Identities = 106/367 (28%), Positives = 185/367 (49%), Gaps = 11/367 (2%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V F++LKL + L+ I GF +++Q R I P++ G+DVL A++G+GKT F I A
Sbjct: 41 VEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPA 100
Query: 81 LQNIDE-KIKAPQG---LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
++ + K K G +++ PTRELALQI V L IGG + ++++E
Sbjct: 101 IELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEK 160
Query: 137 LRGGAQIIVGTPGRVFDMI-DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP-P 194
L G +++ TPGR+ D + + + F N+K I+DEAD +L GF++++ I +LP
Sbjct: 161 LMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNE 220
Query: 195 TSQVVLLSATMPGDVLEVTSKFMKDP---VRILVKKDELTLEGIGQYYVNVEEEQYKYDC 251
Q +L SAT V ++ ++ + ++ + D T +G+ Q YV + ++ ++
Sbjct: 221 DRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDK-RFLL 279
Query: 252 LTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGS 311
L + ++F ++ V+ E L + V ++ +QQ+R EF +
Sbjct: 280 LFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 339
Query: 312 SRILISTDLLARGIDVQQVSLVINYDLPSNKENY-XXXXXXXXXXXXXXXXXNFVTNKDI 370
ILI TD+ ARG+D+ V +I +D P + +Y F+T ++
Sbjct: 340 RGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNEL 399
Query: 371 GAMRELE 377
G +R L+
Sbjct: 400 GFLRYLK 406
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 154 bits (388), Expect = 3e-37
Identities = 112/395 (28%), Positives = 199/395 (50%), Gaps = 35/395 (8%)
Query: 16 TYDKVVYSFDDLKL-KEELLRGIFG-YGFVEPSAIQQRAILPIIEGK---DVLAQAQSGT 70
T + + ++++L + +LLR I F P+ IQ+ I + K D L A +G+
Sbjct: 166 TVENPLRNWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGS 225
Query: 71 GKTGTFSIAALQNIDEK---------IKAPQGLILAPTRELALQIQKVVMALA------I 115
GKT F I L + I P+ LILAPTREL QIQK +
Sbjct: 226 GKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKES 285
Query: 116 HMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADE 175
+ D KV + +GG SL+E S +L G I+V TPGR+ D ++ + ++ +LDEAD+
Sbjct: 286 NYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADK 345
Query: 176 MLSTGFKEQIYNIFTMLPPTS------QVVLLSATMPGDVLEVTSKFMKDPVRILVKKD- 228
M+ GF++Q+ NI T + + Q ++ +ATM + ++ + +M+ PV + +
Sbjct: 346 MIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVET 405
Query: 229 --ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERL-RENN 285
E ++ + +Y N E++ K + YD +IF N ++ + L E+ +E N
Sbjct: 406 GSEPLIQQVVEYADNDEDKFKKLKPIVAKYD----PPIIIFINYKQTADWLAEKFQKETN 461
Query: 286 FTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
V+ ++ Q++R+ ++ FR+ +I+I+T++ ARG+D+ VSLV+N+ + ++Y
Sbjct: 462 MKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDY 521
Query: 346 XXXXXXXXXXXXXXXXXNFVT-NKDIGAMRELERF 379
+FV+ +D +REL ++
Sbjct: 522 IHRIGRTGRAANEGTAVSFVSAAEDESLIRELYKY 556
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 154 bits (388), Expect = 3e-37
Identities = 105/380 (27%), Positives = 193/380 (50%), Gaps = 13/380 (3%)
Query: 22 YSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAAL 81
+SFD L L+ I + +P+ IQ AI + G+DVL A++G+GKT + A+
Sbjct: 270 FSFDKL-----LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAI 324
Query: 82 QNIDEK--IKAPQG---LILAPTRELALQI-QKVVMALAIHMDVKVHACIGGTSLQEDSE 135
+I ++ +KA +G +I+ PTRELA+Q+ Q+ ++ + A GG+ ++ +E
Sbjct: 325 VHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNE 384
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
GA+++V TPGR+ D++ + DEAD M GF+ Q+ +I + P
Sbjct: 385 LQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPD 444
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCL-TD 254
Q ++ SAT V + + DPVRI+ + I Q ++ + K L +
Sbjct: 445 RQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRN 504
Query: 255 LYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
L + S+ + +IF + E++ ++L+ +F + ++ D+ Q ER+ + +FR S+I
Sbjct: 505 LVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQI 563
Query: 315 LISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMR 374
L++TD+ ARG+D+ ++ VIN+D+ + + + VT KDI +
Sbjct: 564 LVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVG 623
Query: 375 ELERFYSTQIEELPSSISEL 394
L + + +E+P + +L
Sbjct: 624 HLVKNLESVSQEVPKPLMDL 643
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 152 bits (384), Expect = 8e-37
Identities = 102/349 (29%), Positives = 179/349 (51%), Gaps = 19/349 (5%)
Query: 7 DIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQA 66
D D + S K + SF DL LL G + P+ IQ+ I +++G++++ +A
Sbjct: 84 DGDIKVVTSEKVKTLSSFKDLC--SPLLIKALGKEYSAPTIIQKYCIPSLVDGRNLICRA 141
Query: 67 QSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIG 126
+G GKT F I ++ ++K PQ I++PTREL QI+ L ++V + G
Sbjct: 142 PTGMGKTMCFLIPIIER-HRQMKKPQACIISPTRELCEQIRVEASKLVAGSRIRVVSIYG 200
Query: 127 GTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIY 186
++ G I+V TPGR+ D++ R+ I+MF+LDEAD++L GF+ I
Sbjct: 201 ----KKQDLPSYSGVDIVVATPGRLIDLLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIR 256
Query: 187 NIFTMLPPTSQVVLLSATMPGDVLEVTSKFM-KDPVRILVKKDELTLEGIGQYYVNVEEE 245
I +P +Q L SAT + + + F+ +D V I + + TL+ I Q V V +
Sbjct: 257 EIHGFVPKNTQTCLFSATYSPKLTRMINYFLPEDKVSIEISSE--TLKNIRQEIVEVRNK 314
Query: 246 QYKYDCLTDLYD---------SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQ 296
+ + D + + ++F + + E+ + L+++ +++ D +
Sbjct: 315 KKMLLNILKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKE 374
Query: 297 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
Q +RD +K FR+G ++++T + ARGID++ V LVINYD+P + + Y
Sbjct: 375 QADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEY 423
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 152 bits (383), Expect = 1e-36
Identities = 94/346 (27%), Positives = 177/346 (50%), Gaps = 29/346 (8%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ +F++ L + L I G+ + + +Q+ +I I+ G+D++A AQ+G+GKT F +
Sbjct: 287 ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPI 346
Query: 81 LQNID---------EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQ 131
L ++ ++++ P+ +I+APTREL QI + V+ GGT L
Sbjct: 347 LAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLG 406
Query: 132 EDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTM 191
+ G I+ TPGR+ D+I + IK +LDEAD ML GF ++ + +
Sbjct: 407 HSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISC 466
Query: 192 LPPTS----QVVLLSATMPGDVLEVTSKFMKDPVRILV--------KKDELTLEGIGQYY 239
S Q ++ SAT P ++ + ++F+K + + + T+ +GQ+
Sbjct: 467 PGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFS 526
Query: 240 VNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQE 299
K + L ++ +I + ++F T++K + + L + + ++I+ D +Q+E
Sbjct: 527 --------KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRE 578
Query: 300 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
R+ + +FR G +L++T + ARG+D++ V VIN+DLPS + Y
Sbjct: 579 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 624
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 152 bits (383), Expect = 1e-36
Identities = 103/344 (29%), Positives = 178/344 (50%), Gaps = 9/344 (2%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
E ++ K ++ + K+ LL+ + G GF + IQ ++I P++EGKDVLA A++G
Sbjct: 56 ETKVSEFLTKTTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTG 115
Query: 70 TGKTGTFSIAALQNIDE-KIKAPQG---LILAPTRELALQIQKVVMALAIHMDVKVHACI 125
+GKT F + A++ + + K G +I++PTREL++Q V+ L ++ +
Sbjct: 116 SGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVM 175
Query: 126 GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRR-IFKTDNIKMFILDEADEMLSTGFKEQ 184
GG++ + + L G I+V TPGR+ D + F N+K I+DEAD +L GF+ +
Sbjct: 176 GGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIE 235
Query: 185 IYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFM-KDPVRILV--KKDELTLEGIGQYYVN 241
+ + LP Q +L SAT V E+ + +PVR+ V K +E T+EG+ Q Y+
Sbjct: 236 MQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIV 295
Query: 242 VEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERD 301
++ T L + + ++F ++ V+ E L + +I+ +QQ+R
Sbjct: 296 APSDKRLLLLFTFLKKN-KTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRT 354
Query: 302 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
T +F + IL+ TD+ ARG+D+ V ++ YD Y
Sbjct: 355 TTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREY 398
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 151 bits (382), Expect = 1e-36
Identities = 106/334 (31%), Positives = 173/334 (51%), Gaps = 21/334 (6%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+DLK+ + + +G+ GFV +QQ+ I +EG D++ +Q+GTGKT F + LQ
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 84 IDEKIKAPQG-------LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
+ + G L++ PTRELALQI V+ +A + + +GG L+ + E
Sbjct: 66 L---VSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGG--LEAEDEL 120
Query: 137 LR-GGAQIIVGTPGRVFDMIDRRIF-KTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPP 194
L+ I+V TPGR+ + + T N+++ ILDEAD+M+ GFKE + +I +P
Sbjct: 121 LKVNQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQ 180
Query: 195 TSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTD 254
Q +L SAT + ++DP I + K+E + QY+ + K + L
Sbjct: 181 KKQTLLFSATPKASTARILK--LEDPRIISIYKEEGFPSQLRQYFYMMRTGD-KINYLHT 237
Query: 255 LYDSISVTQAVIFCNTRRKVE---ELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGS 311
S + ++F +T ++V+ L ERL+ N + + + Q++R + K F
Sbjct: 238 FIGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRN-RIFCLSGGMSQKQRIDVFKRFVKEK 296
Query: 312 SRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ IL TDL +RG+D +V +VI YD P N E Y
Sbjct: 297 NGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETY 330
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 151 bits (382), Expect = 1e-36
Identities = 104/368 (28%), Positives = 178/368 (48%), Gaps = 19/368 (5%)
Query: 41 GFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNID-----------EKIK 89
GF +PS IQ + ++ G+D + +Q+G+GKT F + AL +ID E+
Sbjct: 103 GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKP 162
Query: 90 APQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPG 149
+P L+L+PTRELA QI+ V + + K GG S E EA RGG +I++ TPG
Sbjct: 163 SPFVLVLSPTRELAQQIEGEVKKYSYN-GYKSVCLYGGGSRPEQVEACRGGVEIVIATPG 221
Query: 150 RVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDV 209
R+ D+ + + ++ +LDEAD ML GF+ I I + P V L SAT P V
Sbjct: 222 RLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVALTSATWPEGV 281
Query: 210 LEVTSKFMKDPVRILVKKDELT-LEGIGQYYVNVEEEQYKYDCLTDLYDSISVT-----Q 263
++T K+ K+ V + +LT + + Q++ V + ++ + ++ + ++ +
Sbjct: 282 RKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDS-RFLRVCEIVNFLTAAHGQNYK 340
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
+IF ++ + L+ ++ Q +R+ + RSG +IL++TDL +R
Sbjct: 341 MIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASR 400
Query: 324 GIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQ 383
GIDV ++ V+NYD P + E Y +F+ D L +
Sbjct: 401 GIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKS 460
Query: 384 IEELPSSI 391
+E+P +
Sbjct: 461 EQEVPDQL 468
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 151 bits (381), Expect = 2e-36
Identities = 104/382 (27%), Positives = 181/382 (47%), Gaps = 60/382 (15%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF++L L + LL + GF P+ +Q A+ II+G D + Q+ +G+GKT + + L
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 83 NI-------------DEKIKAPQGLILAPTRELALQIQKVVMALA--IHMDVKVHACIGG 127
I ++K Q +I+AP+REL +QI + V L +H + V +GG
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRM-VQQLVGG 229
Query: 128 TSLQEDSEALRGGAQ-IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIY 186
+ EAL+ I+VGTPGR+ ++ T + +LDE DE+LS F+E I+
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 187 NIFTMLPPTS--------------QVVLLSATMPGDVLEVTSKFMKDPVRILVKK----- 227
I + S Q +L+SAT+P V+ + +PV + K
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLD 349
Query: 228 -----------DELTLEGIGQ-------------YYVNVEEEQYKYDCLTDLYDSISVTQ 263
T E GQ +Y + + Q+K D L ++
Sbjct: 350 TVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQS 409
Query: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
+ F N R+++++ +L + ++ DL + R T++K+F++G ++L++ +L AR
Sbjct: 410 VIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSAR 469
Query: 324 GIDVQQVSLVINYDLPSNKENY 345
G+DV + LV+N +LP++ +Y
Sbjct: 470 GLDVAECDLVVNLELPTDAVHY 491
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 150 bits (379), Expect = 3e-36
Identities = 104/351 (29%), Positives = 177/351 (49%), Gaps = 38/351 (10%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
FD+ + L+ + G V+ + +Q + ++GKD L +A++GTGK+ F + A++
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 84 IDEKIKAPQG---------LILAPTRELALQIQKVVMALAIHMD-VKVHACIGGTSLQED 133
+ + + + +G LIL PTRELA QI AL + D + V IGGT + D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 134 SEALRGG-AQIIVGTPGRVFDMIDRRIFKTDNI---KMFILDEADEMLSTGFKEQIYNIF 189
+ L QI++ TPGR+ D I+ + T + K+FI+DEAD +L GFK + I
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKII 556
Query: 190 TMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY 249
LP Q +L SAT+P +V V+ ++++K+D ++ IG V ++ K
Sbjct: 557 DCLPRQRQSLLFSATIPKEVRRVS--------QLVLKRDHSYIDTIGLGCVETHDK-VKQ 607
Query: 250 DCLTDLYDS---------------ISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSD 294
C+ ++S + + ++FC+T + LRE V I++
Sbjct: 608 SCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHAR 667
Query: 295 LQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
Q R + EF+ + IL+++D+ ARG++ V+LVI +PS++E Y
Sbjct: 668 KPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 718
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 150 bits (379), Expect = 3e-36
Identities = 107/372 (28%), Positives = 179/372 (47%), Gaps = 8/372 (2%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F L L+ L++ + G + IQQ+ I I+ G+D + A++G+GKT F++ L+
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
+ E+ + L+L PT ELA QI + + M V+V GGT +S+ L I
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 144 IVGTPGRVFD-MIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
+V PGR+ D + F DN+K ++DEAD ML+ F E + I LP T Q + S
Sbjct: 129 VVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFS 188
Query: 203 ATMPGDVLEVTSKF--MKDPVRILVKKDELTLEGIGQYYV---NVEEEQYKYDCLTDLYD 257
ATM D ++ +S F D D T+E + Q Y+ + + + + L +
Sbjct: 189 ATMK-DFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247
Query: 258 SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIS 317
+IF NT++ + L+ L+ ++ ++Q+ER + F+S R LI+
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307
Query: 318 TDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXN-FVTNKDIGAMREL 376
TD+ ARG+D+ V LV+N+ LP + Y + F +D+ + +
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAI 367
Query: 377 ERFYSTQIEELP 388
E +T++ E P
Sbjct: 368 EEEINTKLTEHP 379
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 150 bits (378), Expect = 4e-36
Identities = 101/414 (24%), Positives = 182/414 (43%), Gaps = 31/414 (7%)
Query: 2 SDGITDIDENQI-QSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGK 60
SD D + QI Q+ K + + L + + I GF +P+ IQ++ I I++GK
Sbjct: 3 SDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGK 62
Query: 61 DVLAQAQSGTGKTGTFSIAALQNIDEK-IKAPQGLILAPTRELALQIQKVVMALAIHMDV 119
DV+A +++G+GKT F I LQ + + + L+++PTRELALQ KVV L +
Sbjct: 63 DVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGL 122
Query: 120 KVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST 179
+ +GG ++E + I++ TPGR+ +I + ++ + DEAD +
Sbjct: 123 RCACLVGGDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEM 182
Query: 180 GFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYY 239
GF++Q+ +P + Q +L SAT+P +++ + DP+ + + DE + + +
Sbjct: 183 GFQDQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVF 242
Query: 240 VNVEEEQYKYD----CLTDLYDSISVT-------------------------QAVIFCNT 270
++ + C + + T Q V+FC T
Sbjct: 243 CMCRPDEKLFALLHLCRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCAT 302
Query: 271 RRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 330
+ VE + L S +YS L R +++F + IL+ TD+ ARG+D+ +
Sbjct: 303 MKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLL 362
Query: 331 SLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQI 384
VIN P + + + + N ++ + +L F I
Sbjct: 363 DTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGKPI 416
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 149 bits (377), Expect = 5e-36
Identities = 102/334 (30%), Positives = 178/334 (52%), Gaps = 10/334 (2%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
+ F DL+L E + + I GF + IQ+R+I P++ G+DVL A++G+GKT F I
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 81 LQNIDE-KIKAPQG---LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
++ + K K G +I++PTRELALQI V L + IGG + + +++
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 137 LRGGAQIIVGTPGRVFDMI-DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
L G ++V TPGR+ D + + + F N++ ++DEAD +L GF++++ I +LP
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSE 267
Query: 196 S-QVVLLSATMPGDVLEVTSKFMK-DPVRILVK--KDELTLEGIGQYYVNVEEEQYKYDC 251
+ Q +L SAT V ++ +K P+ + V K T+EG+ Q YV V+ ++ ++
Sbjct: 268 NRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDK-RFLL 326
Query: 252 LTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGS 311
L + ++F ++ V+ + E L + V ++ +QQ R EF +
Sbjct: 327 LFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAE 386
Query: 312 SRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
IL+ T++ ARG+D+ V ++ YD P + +Y
Sbjct: 387 KGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 149 bits (376), Expect = 7e-36
Identities = 103/322 (31%), Positives = 175/322 (53%), Gaps = 21/322 (6%)
Query: 25 DDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNI 84
+D+ + L + I GF + + +Q + I +++GKDV+ Q+ +GTGKT F L I
Sbjct: 7 EDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCI 66
Query: 85 -DEKIKAPQGL---ILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGG 140
D K + G+ ++ PTRELALQI++V A DVK IGG S++ED + ++
Sbjct: 67 YDGKGRGRPGVTAVVITPTRELALQIREV----AGLFDVKCECFIGGMSIEEDYKRMKEE 122
Query: 141 AQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVL 200
I VGTPGR+ +++ + K ++ +LDEAD++L GF+E++ + LP L
Sbjct: 123 FSIAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTGL 182
Query: 201 LSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSIS 260
SAT V +++ F+++PV I V +E+ + Y+ V + L L D ++
Sbjct: 183 FSATRNDSVDKLSRVFLRNPVSINVGNNEMP---VALEYIVVS----PMEKLLVLMDIVT 235
Query: 261 VTQAVIFCNTRRKVEELTERLRENNF-TVSAIYSDLQQQERDTIMKEF--RSGSSRILIS 317
+ ++F T +V+ + + F + I+ + Q ER+ + +EF R G +L
Sbjct: 236 GRRCIVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQRDG---LLFC 292
Query: 318 TDLLARGIDVQQVSLVINYDLP 339
TD+ ARGID + V LV+++D+P
Sbjct: 293 TDVAARGIDFRGVDLVVHFDVP 314
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 149 bits (376), Expect = 7e-36
Identities = 108/383 (28%), Positives = 185/383 (48%), Gaps = 14/383 (3%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F+D L L G+ + +P+ IQ+ I + G DV+ A++G+GKT I L+
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 84 IDEKIKAPQ----GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG 139
+ +P LI++PTRELALQ + A+ H IGG+ + + +
Sbjct: 138 LWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI-S 196
Query: 140 GAQIIVGTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV 198
G IIV TPGR+ +D D++++ +LDEAD ML GF +Q+ +I LP Q
Sbjct: 197 GINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQT 256
Query: 199 VLLSATMPGDVLEVTSKFMKDPVRILVKKD--ELTLEGIGQYYVNVEEEQYKYDCLTDLY 256
+L SAT +V ++ DPV + V ++ T + + Q YV VEEE +K + L
Sbjct: 257 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEE-HKINALWSFI 315
Query: 257 DSISVTQAVIFCNTRRKVEELTERLRE--NNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
++ ++++F ++ ++ LTE + V ++ + Q++R +F + +
Sbjct: 316 EAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAV 375
Query: 315 LISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMR 374
LI+TD+ +RG+D + + VI D P+ ++Y V+ AM
Sbjct: 376 LIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMI 435
Query: 375 ELERFYSTQIEEL---PSSISEL 394
+S IEEL P ++S++
Sbjct: 436 GKLEKHSIPIEELKIHPDAMSDV 458
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 149 bits (375), Expect = 9e-36
Identities = 95/328 (28%), Positives = 168/328 (50%), Gaps = 32/328 (9%)
Query: 40 YGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNI------DEKIKAPQG 93
+G + P IQ +A+ I+ G+DV+ +++G+GKT ++ + L+ + + P G
Sbjct: 276 FGSLTP--IQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMG 333
Query: 94 LILAPTRELALQI-QKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVF 152
LILAPTRELALQI ++V ++ C GG+ +++ L+ G +I+V TPGR
Sbjct: 334 LILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFI 393
Query: 153 DMI---DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDV 209
D++ D ++ T I ++DEAD + GF+ QI I + P Q VL SAT P +
Sbjct: 394 DILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKL 453
Query: 210 LEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDL-------YDSISV- 261
+ + P+ I + + E + Q + E K+D L L +D +
Sbjct: 454 RSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSE 513
Query: 262 ------------TQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRS 309
+A+IF +++ + ++++L AI++ QER +++F+
Sbjct: 514 NDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKR 573
Query: 310 GSSRILISTDLLARGIDVQQVSLVINYD 337
+ IL+ T++L+RG++V +VSLVI Y+
Sbjct: 574 EKNSILLCTEVLSRGLNVPEVSLVIIYN 601
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 148 bits (374), Expect = 1e-35
Identities = 98/336 (29%), Positives = 167/336 (49%), Gaps = 13/336 (3%)
Query: 66 AQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACI 125
A++GTGKT F+I LQ + LIL PTRELA QI + AL + +K +
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIV 249
Query: 126 GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDR------RIFKTDNIKMFILDEADEMLST 179
GG SL + L ++V TPGR+ D+I+ ++FK I+ F+LDEAD ML
Sbjct: 250 GGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFK--KIQFFVLDEADRMLEG 307
Query: 180 GFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRI--LVKKDELTLEGIGQ 237
+ +Q+ IF + Q +LLSAT+ ++ + + P K DE T++ + Q
Sbjct: 308 QYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQ 367
Query: 238 YYVNVE---EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSD 294
YV ++ Y + + + + +IF T R+ + L F V +++S
Sbjct: 368 KYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQ 427
Query: 295 LQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXX 354
+ Q++R + FRS + +++I TD+ +RG+D+ V LV+N+++P + Y
Sbjct: 428 IPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSAR 487
Query: 355 XXXXXXXXNFVTNKDIGAMRELERFYSTQIEELPSS 390
+FVT D+ ++ +E+ +++EL S
Sbjct: 488 AGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVS 523
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 148 bits (374), Expect = 1e-35
Identities = 109/349 (31%), Positives = 168/349 (47%), Gaps = 35/349 (10%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
FD L L+ I GF + +Q+ + I++GKDVLA+A++GTGKT F + A++
Sbjct: 361 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 420
Query: 84 IDEKIKAPQG-----------LILAPTRELALQIQ-KVVMALAIHMDVKVHACIGGTSLQ 131
+ IK+P L++ PTRELA Q + L H + V IGGT L
Sbjct: 421 V---IKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLP 477
Query: 132 EDSEALRGG-AQIIVGTPGRVFDMIDRRI-FKTD--NIKMFILDEADEMLSTGFKEQIYN 187
+ ++ QI+V TPGR+ D I+ F T +K+ +LDEAD +L GF+ I
Sbjct: 478 TEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIER 537
Query: 188 IFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQY 247
I +P Q L SAT+P +V ++ +K + EG G+ + V + Y
Sbjct: 538 IIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFI----NCVQEGSGETHQKVTQ-MY 592
Query: 248 KYDCLTDLYDSISVT-----------QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQ 296
L + + V + +IFC T + + L + + V I+S
Sbjct: 593 MIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKP 652
Query: 297 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
Q R + EFR + IL+++D+ ARG+D VSLV+ LPS++E Y
Sbjct: 653 QSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQY 701
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 148 bits (373), Expect = 2e-35
Identities = 108/370 (29%), Positives = 175/370 (47%), Gaps = 17/370 (4%)
Query: 23 SFDDL----KLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
SF+DL + LL + GF EP+ IQ I + +DVLA +G+GKT F I
Sbjct: 119 SFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLI 178
Query: 79 AALQNI--DEKIKAPQGLILAPTRELALQI--------QKVVMALAIHMDVKVHACIGGT 128
+Q I D++ +GLI++PT+ELA QI K+ + + V + + G
Sbjct: 179 PLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGA 238
Query: 129 SLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNI 188
L+ + + II+ TP R+ D++ +K I DEAD++ F EQ +I
Sbjct: 239 KLKNKVVSDKK-YDIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDI 297
Query: 189 FTML-PPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQY 247
+ P+ + + SAT+P +V E+ M DPVR+++ E I Q + E+
Sbjct: 298 LSACREPSLRKAMFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEG 357
Query: 248 KYDCLTDLYDSISVTQAVI-FCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKE 306
K + L +I F + + + L L + V I+++ +RD I++
Sbjct: 358 KLIAIRQLVQEGEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIER 417
Query: 307 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVT 366
F++G LI TD+LARGID + V+LVINYD+P + + Y F T
Sbjct: 418 FKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYT 477
Query: 367 NKDIGAMREL 376
+D A++ +
Sbjct: 478 KQDSVAIKPI 487
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 148 bits (373), Expect = 2e-35
Identities = 103/351 (29%), Positives = 178/351 (50%), Gaps = 38/351 (10%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
FD+ + L+ + G ++ + +Q + ++GKD L +A++GTGK+ F + A++
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 84 IDEKIKAPQG---------LILAPTRELALQIQKVVMALA-IHMDVKVHACIGGTSLQED 133
+ + + + +G LIL PTRELA QI AL H + V IGGT + D
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLD 449
Query: 134 SEALRGG-AQIIVGTPGRVFDMIDRRIFKTDNI---KMFILDEADEMLSTGFKEQIYNIF 189
+ L QI++ TPGR+ D I+ + T + K+FI+DEAD +L GF+ + I
Sbjct: 450 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKII 509
Query: 190 TMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY 249
LP Q +L SAT+P +V V+ ++++K+D ++ IG V ++ +
Sbjct: 510 DCLPRQRQSLLFSATIPKEVRRVS--------QLVLKRDHSYIDTIGLGCVETHDK-VRQ 560
Query: 250 DCLTDLYDS------------ISVT---QAVIFCNTRRKVEELTERLRENNFTVSAIYSD 294
C+ ++S I+ T + ++FC+T + LRE V I++
Sbjct: 561 SCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHAR 620
Query: 295 LQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
Q R + EF+ + IL+++D+ ARG++ V+LVI +PS++E Y
Sbjct: 621 KPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 671
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 147 bits (372), Expect = 2e-35
Identities = 105/355 (29%), Positives = 178/355 (49%), Gaps = 20/355 (5%)
Query: 6 TDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQ 65
T IDE + T K F DL + + L+G+ F++ + IQ +I ++G DVLA
Sbjct: 28 TKIDEYDPKITKAKF---FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAA 84
Query: 66 AQSGTGKTGTFSIAALQNI-DEKIKAPQGL---ILAPTRELALQIQKVVMALAIHMDVKV 121
A++G+GKT F + ++ + EK GL I++PTRELA+QI +V+ + H
Sbjct: 85 AKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSA 144
Query: 122 HACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTG 180
IGG ++ + E + I++GTPGR+ +D+ + T N++M +LDEAD L G
Sbjct: 145 GLVIGGKDVKFELERI-SRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMG 203
Query: 181 FKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRI--------LVKKDELTL 232
FK+ + I + L P+ Q +L SAT V ++ + D + V K+ T
Sbjct: 204 FKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTP 263
Query: 233 EGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLR--ENNFTVSA 290
E + Q+Y+ V K D L S + ++F ++ ++V + E R + ++
Sbjct: 264 ETLQQFYIEVPLAD-KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMH 322
Query: 291 IYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
++ +Q+ R + +F L +TD++ARGID V V+ D P + + Y
Sbjct: 323 LHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTY 377
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 145 bits (366), Expect = 1e-34
Identities = 115/413 (27%), Positives = 194/413 (46%), Gaps = 51/413 (12%)
Query: 18 DKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFS 77
D F+ + L LL+ + G+ P+ IQ++AI +EGKD+LA+A++G+GKT ++
Sbjct: 3 DSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYA 62
Query: 78 IAALQNIDEK-------IKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSL 130
I LQ + + +A +GL+L PT+ELA Q Q ++ LA + V + S
Sbjct: 63 IPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVR--VANVSA 120
Query: 131 QEDSEALRG----GAQIIVGTPGRVFDMIDRRIFK-TDNIKMFILDEADEMLSTGFKEQI 185
EDS + R ++VGTP R+ + + K D++++ ++DEAD + S GF+E++
Sbjct: 121 AEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEEL 180
Query: 186 YNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELT-LEGIGQYYVNVEE 244
++ LP Q L+SAT DV + + +PV + +++ +L + + Q+ V E
Sbjct: 181 KSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCET 240
Query: 245 EQYKYDCLTDLYD-SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTI 303
E+ K+ L L S+ ++++F NT + L L + + + +L + R I
Sbjct: 241 EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHI 300
Query: 304 MKEFRSGSSRILISTDL---------------------------LARGIDVQQVSLVINY 336
+ +F G +I+TD +ARGID VS V+N+
Sbjct: 301 ISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNF 360
Query: 337 DLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELPS 389
DLP E Y FV E+F+ +IEEL S
Sbjct: 361 DLPPTPEAYIHRAGRTARANNPGIVLTFVL--------PTEQFHLGKIEELLS 405
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 144 bits (363), Expect = 2e-34
Identities = 102/341 (29%), Positives = 170/341 (48%), Gaps = 19/341 (5%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
FD L L+ I G+ + +Q+ + I++GKDVLA+A++GTGKT F + +++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 84 I--------DEKIKAPQGLILAPTRELALQIQ-KVVMALAIHMDVKVHACIGGTSLQEDS 134
+ D K L++ PTRELA Q + L H + V IGGT L +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 135 EALRGG-AQIIVGTPGRVFDMIDRR---IFKTDNIKMFILDEADEMLSTGFKEQIYNIFT 190
+ ++ QI+V TPGR+ D I+ + +K+ +LDEAD +L GF++ I I +
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 235
Query: 191 MLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEG---IGQYYVNVEEEQY 247
+P Q L SAT+P +V ++ ++ + E T+E + Q ++ +++
Sbjct: 236 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 295
Query: 248 KYDCLTDLYDSISVT---QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIM 304
T L + I + ++FC T + + + L E N V I+S Q R +
Sbjct: 296 FSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVS 355
Query: 305 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
EFR IL+++D+ ARG+D V+LV+ LP ++E Y
Sbjct: 356 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQY 396
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 143 bits (361), Expect = 4e-34
Identities = 101/357 (28%), Positives = 168/357 (46%), Gaps = 8/357 (2%)
Query: 26 DLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNID 85
D K+ L + + F P+ IQ +A+ +++ + ++A A +G+GKT F + +
Sbjct: 123 DFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLR 182
Query: 86 -EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIG-GTSLQEDSEALRGGAQI 143
K + L+LAPTRELA QI + L ++ H + Q+ + I
Sbjct: 183 AHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDI 242
Query: 144 IVGTPGRVFDMIDRR--IFKTDNIKMFILDEADEMLSTG---FKEQIYNIFTMLP-PTSQ 197
+V TP RV ++ + + +++ F+LDEAD ++ G FKEQ+ +I+ PT
Sbjct: 243 LVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKC 302
Query: 198 VVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYD 257
V SAT V + + +K+ VRI + E + Q + V E K + DL
Sbjct: 303 VAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVR 362
Query: 258 SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILIS 317
++F ++ + ++L E L + V I+++ Q +RD +K FR GS +LI
Sbjct: 363 QGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLIC 422
Query: 318 TDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMR 374
T+L+ RGID + V+LVINYD P +Y F T +D +R
Sbjct: 423 TELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLR 479
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 142 bits (357), Expect = 1e-33
Identities = 103/345 (29%), Positives = 179/345 (51%), Gaps = 23/345 (6%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
S D L + +L+ + +GF + + +Q AI ++ KDV A+A +G+GKT F + L+
Sbjct: 8 SLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLE 67
Query: 83 NIDEKIK-APQG------LILAPTRELALQIQKVVMALAIHMDVK---VHACIGGTSLQE 132
+ + K P G L+++PTRELA QI +V+ H D++ +GG S++E
Sbjct: 68 ILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEE 127
Query: 133 DSEALRGGAQ-IIVGTPGRVFDMIDRR------IFKTDNIKMFILDEADEMLSTGFKEQI 185
D LR I+V TPGR+ D+ R+ + +++ +LDEAD +L GFK +
Sbjct: 128 DIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSV 187
Query: 186 YNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVK-KDELTLEGIGQYYVNVEE 244
NI LP + L SAT +V ++ +++PV + VK K + Q + + E
Sbjct: 188 NNILGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVE 247
Query: 245 EQYKYDCLTDLYDSIS--VTQAVIFCNTRRKVEELTERLRE--NNFTVSAIYSDLQQQER 300
+ K+ L + S + + + ++F T VE E L TV I+ + + +R
Sbjct: 248 PELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKM-KNKR 306
Query: 301 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
++++FR+ +L+ TD+LARG+DV ++ V+ +D PS ++
Sbjct: 307 ANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSF 351
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 141 bits (356), Expect = 1e-33
Identities = 72/126 (57%), Positives = 94/126 (74%)
Query: 13 IQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGK 72
I+S ++++V SFDD+ L E LLRGI+ YG +PSAIQQRAILP I+G V+AQAQSG GK
Sbjct: 7 IESNWNEIVDSFDDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGK 66
Query: 73 TGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQE 132
TF+I LQ I+ +KA Q L+LAPT+ELA QIQKVVMAL +M HACI GT+++
Sbjct: 67 MATFAILILQQIELDLKATQALLLAPTQELAQQIQKVVMALGDYMGASCHACIRGTNMRA 126
Query: 133 DSEALR 138
+ + L+
Sbjct: 127 EVQKLQ 132
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 140 bits (354), Expect = 3e-33
Identities = 103/380 (27%), Positives = 176/380 (46%), Gaps = 27/380 (7%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F + L E + + + G+ + + IQQ A+ + +G D++A AQ+G+GKT F + +
Sbjct: 342 TFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMT 401
Query: 83 NI--DEKIKA-------PQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
+ D + P+ +IL PTRELA QI A +++ GG ++ +
Sbjct: 402 RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQIYNI--FT 190
+ GA IIVGT GR+ + K D + F+LDEAD M+ GF I I +
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYD 521
Query: 191 MLP--PTSQVVLLSATMPGDVLEVTSKFMKDP-VRILVKKDELTLEGIGQYYVNVEEEQY 247
+P Q ++ SAT P V E F+++ V I + K + + Q + E +
Sbjct: 522 SMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEK 581
Query: 248 KYDCL-----------TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQ 296
K L T+ + + ++F + R + L L I+ +
Sbjct: 582 KDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGARE 641
Query: 297 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXX 356
Q+ER +++FR+GS +LI+T + RG+D++ V VINYD+P N ++Y
Sbjct: 642 QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 701
Query: 357 XXXXXXNFVTNKDIGAMREL 376
+F+ ++D + EL
Sbjct: 702 NSGRATSFI-SEDCSLLSEL 720
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 140 bits (353), Expect = 3e-33
Identities = 102/396 (25%), Positives = 179/396 (44%), Gaps = 27/396 (6%)
Query: 19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSI 78
K +F + L E + + + G+ + + IQQ + I +G D++A AQ+G+GKT F +
Sbjct: 549 KTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLL 608
Query: 79 AALQNIDEKIKA---------PQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTS 129
+ + ++ P+ +IL PTREL QI A +++ GG +
Sbjct: 609 PIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLA 668
Query: 130 LQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLST-GFKEQIYNI 188
+ + + GA IIVGT GR+ + K D + F+LDEAD M+ GF I I
Sbjct: 669 VGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTI 728
Query: 189 --FTMLPPTS--QVVLLSATMPGDVLEVTSKFMKDP-VRILVKKDELTLEGIGQYYVNVE 243
+ +P Q ++ SAT P V E +K+ + + + K + + Q + +
Sbjct: 729 VNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCD 788
Query: 244 EEQYKYDCL-----------TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIY 292
+ K L T+ + + ++F + R + L L I+
Sbjct: 789 RSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIH 848
Query: 293 SDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXX 352
+Q+ER +++FR+GS +LI+T + RG+D++ V VINYD+P N ++Y
Sbjct: 849 GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT 908
Query: 353 XXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELP 388
+F+ ++D + EL R S + +P
Sbjct: 909 GRVGNAGRATSFI-SEDCNLLSELVRVLSDADQLVP 943
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 140 bits (352), Expect = 4e-33
Identities = 109/404 (26%), Positives = 186/404 (45%), Gaps = 39/404 (9%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF D + + + R + G+ + IQQ + + +GKD+LA AQ+G+GKT F + +
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMS 358
Query: 83 NI----DEKIKA-----PQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
+ D A P+ +IL PTRELA QI + +++ GG ++ +
Sbjct: 359 RLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYN 418
Query: 134 SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML-STGFKEQIYNI--FT 190
+ G IIVGT GRV + K D + +LDEAD M+ S GF +I I +
Sbjct: 419 KSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYK 478
Query: 191 MLPPTS--QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEE--- 245
+P Q ++ SAT P V E K +++ ++ T++ IG V +E
Sbjct: 479 NMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMI------TIDKIGAANKCVIQEFEL 532
Query: 246 ---QYKYDCL------------TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSA 290
K D L T+ + V + ++F ++ + L +
Sbjct: 533 CDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAIT 592
Query: 291 IYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXX 350
I+ +Q+ER +K FRSG+ +LI+T ++ RG+D++ V VINYD+P+N ++Y
Sbjct: 593 IHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIG 652
Query: 351 XXXXXXXXXXXXNFVT-NKDIGAMRELERFYSTQIEELPSSISE 393
+F++ D+ + +L R + + +PS + E
Sbjct: 653 RTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKE 696
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 140 bits (352), Expect = 4e-33
Identities = 98/368 (26%), Positives = 168/368 (45%), Gaps = 8/368 (2%)
Query: 33 LLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAAL-----QNIDEK 87
+LR + GF EP+ IQ++AI ++ G++ A A +G+GKT F L N
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPS 211
Query: 88 IKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGT 147
+ +IL+P RELA Q + L H + L + ++ + +++ T
Sbjct: 212 TDGIRAVILSPARELAAQTAREGKKLI--KGSNFHIRLMTKPLVKTADFSKLWCDVLIST 269
Query: 148 PGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV-VLLSATMP 206
P R+ I + ++ +LDE+D++ +QI + S + L SAT+P
Sbjct: 270 PMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLP 329
Query: 207 GDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVI 266
V E+ M D VR+++ + E + Q V E+ K L + +I
Sbjct: 330 DSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLI 389
Query: 267 FCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGID 326
F ++ + +EL + L+ N I+SDL ER+ + +FR+G +LI+TD++ARG+D
Sbjct: 390 FVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMD 449
Query: 327 VQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEE 386
+ ++ VINYD P + Y F T +D+ +R + + E
Sbjct: 450 FKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCE 509
Query: 387 LPSSISEL 394
+PS I L
Sbjct: 510 VPSWIMSL 517
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 138 bits (348), Expect = 1e-32
Identities = 100/314 (31%), Positives = 159/314 (49%), Gaps = 7/314 (2%)
Query: 34 LRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG 93
L+ F F + IQ + +G ++ A +GTGKT F + L ID K+K Q
Sbjct: 7 LQAQFEQQFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQV 66
Query: 94 LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEAL-RGGAQIIVGTPGRVF 152
LILAP++ELA+Q V +DV V + IGG + + ++ L + I+VGT GRV
Sbjct: 67 LILAPSQELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVL 126
Query: 153 DMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEV 212
M+D K + ++ I DEAD MLS ++ + + LP Q+ L SAT D+ V
Sbjct: 127 TMLDGGALKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPTDVQLGLFSATSGVDLKYV 186
Query: 213 TSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRR 272
F ++ + V D YV +++ K L L + + QA++F NT
Sbjct: 187 ADTFGQEVRPVSVGTDAPAAITHEFQYV---DQKAKASLLIQL--ARNKQQALVFFNTIS 241
Query: 273 KVEELTERLRENNFTVSAIYS-DLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 331
+ + LR + +V +I S D +Q +R ++ F+ G +L+ TD+ ARG+D++ +
Sbjct: 242 GLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTDVAARGLDIEDLP 301
Query: 332 LVINYDLPSNKENY 345
LV+N LP K+ Y
Sbjct: 302 LVVNAQLPQRKKTY 315
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 138 bits (348), Expect = 1e-32
Identities = 86/220 (39%), Positives = 118/220 (53%), Gaps = 4/220 (1%)
Query: 10 ENQIQSTYDKVVYS-FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQS 68
+ I+ +Y + S F D LK ELLR I GF PS +Q I I G DVL QA+S
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 90
Query: 69 GTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVKVHACIGG 127
G GKT F +A LQ I+ L++ TRELA QI K + +M VKV GG
Sbjct: 91 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150
Query: 128 TSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML-STGFKEQI 185
S+++D E L+ ++VGTPGR+ ++ R F N+K F+LDE D+ML + +
Sbjct: 151 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDV 210
Query: 186 YNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILV 225
IF + P Q ++ SAT+ D+ V KFM+D R V
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDVSRARV 250
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 138 bits (347), Expect = 2e-32
Identities = 112/388 (28%), Positives = 176/388 (44%), Gaps = 49/388 (12%)
Query: 15 STYDKVVY---SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTG 71
ST D V + +F +L L LLR G+ +P+ IQ + I E +D+ A A +G+G
Sbjct: 157 STVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQVQFIPQ--EWRDLCASAITGSG 214
Query: 72 KTGT--------------------FSIAALQNI---DEKIKAPQGLILAPTRELALQIQK 108
K T F++ L+ + +++ A + LIL PTRELA+QI
Sbjct: 215 KVSTRLMVLCNTEILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHS 274
Query: 109 VVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRI-FKTDNIKM 167
++ LA D+K +GG S++E LR I+V TPGR+ D + + D++ +
Sbjct: 275 MIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 334
Query: 168 FILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKK 227
ILDEAD +L TGF +I + + P Q +L SATM +V E+ + P+R+
Sbjct: 335 LILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADP 394
Query: 228 DELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEEL------TERL 281
G+ + Y+ E + C + + + ++F K EL +RL
Sbjct: 395 SARRPPGLTEEYL---REFFVPSCASGTKQAAHRLK-ILFGLAGLKAAELHGNLTQAQRL 450
Query: 282 RENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSN 341
N SA++S ++ FR LI+TD+ ARG+D+ V VINY P
Sbjct: 451 DVRNLGTSALFS----------LELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRE 500
Query: 342 KENYXXXXXXXXXXXXXXXXXNFVTNKD 369
++Y FVT+ D
Sbjct: 501 IDSYVHRVGRTARAGREGYAVTFVTDSD 528
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 135 bits (341), Expect = 8e-32
Identities = 103/364 (28%), Positives = 175/364 (47%), Gaps = 18/364 (4%)
Query: 26 DLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNID 85
+ K+ LL+ I GF P+ IQ +AI ++ G+++LA A +G+GKT FSI L +
Sbjct: 61 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK 120
Query: 86 EKI-KAPQGLILAPTRELALQIQKVVMALAIHMDVKVH----ACIGGTSLQEDSEALRGG 140
+ K + LI++PTRELA QI + ++ ++ ++H A + S
Sbjct: 121 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKK--- 177
Query: 141 AQIIVGTPGRVFDMIDRRIFKTD--NIKMFILDEADEMLS---TGFKEQIYNIFTMLPPT 195
I+V TP R+ ++ + D +++ ++DE+D++ TGF++Q+ +IF L T
Sbjct: 178 FDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF--LACT 235
Query: 196 SQVV---LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCL 252
S V + SAT DV + + + + + + +E + Q + V E K +
Sbjct: 236 SHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAM 295
Query: 253 TDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
+L ++F + + +EL L V I+++ QQ+RD + FR+G
Sbjct: 296 RELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKI 355
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGA 372
+LI T LLARGID + V+LVINYD P++ Y F T D
Sbjct: 356 WVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPL 415
Query: 373 MREL 376
+R +
Sbjct: 416 LRSV 419
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 135 bits (341), Expect = 8e-32
Identities = 101/349 (28%), Positives = 178/349 (50%), Gaps = 17/349 (4%)
Query: 11 NQIQSTYDKV----VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQA 66
+++ Y+K+ + F D L ++ L+G+ + + IQ++ I ++GKDVL A
Sbjct: 54 SRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAA 113
Query: 67 QSGTGKTGTFSIAALQNIDE-KIKAPQGL---ILAPTRELALQIQKVVMALAIHMDVKVH 122
++G+GKT F + L+ + + + GL I++PTRELA Q +V+ + + D
Sbjct: 114 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAG 173
Query: 123 ACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTGF 181
IGG L+ ++E + I+V TPGR+ +D + F +++M +LDEAD +L GF
Sbjct: 174 LIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGF 232
Query: 182 KEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILV--KKDELTLEGIGQYY 239
+ + + LP Q +L SAT V ++ +K+P + V K T + Q Y
Sbjct: 233 ADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNY 292
Query: 240 VNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTE---RLRENNFTVSAIYSDLQ 296
+ V E Q K L S ++++F ++ ++V+ L RLR ++ A++ Q
Sbjct: 293 I-VCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRP-GVSILALHGRQQ 350
Query: 297 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
Q R + EF + +L +TD+ ARG+D V+ V+ +D P + Y
Sbjct: 351 QMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTY 399
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 135 bits (340), Expect = 1e-31
Identities = 104/373 (27%), Positives = 177/373 (46%), Gaps = 39/373 (10%)
Query: 6 TDIDENQIQSTYDKV----VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKD 61
T+ + +++ Y ++ + F L ++ + + FV P+ +Q+ +I P ++GKD
Sbjct: 52 TEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKD 111
Query: 62 VLAQAQSGTGKTGTFSIAALQNID----EKIKAPQGLILAPTRELALQIQKVVMALAIHM 117
VL A +G+GKT F I L+++ + +I++PTRELA QI + + + H
Sbjct: 112 VLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHH 171
Query: 118 DVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRR-IFKTDNIKMFILDEADEM 176
D IGG +L+ + + I++ TPGR+ +D +F T ++M +LDEAD
Sbjct: 172 DFSAGLIIGGKNLKFERTRM-DQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRC 230
Query: 177 LSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRI------------- 223
L GF++ + +I PP Q +L SAT V ++ +KDPV +
Sbjct: 231 LDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSA 290
Query: 224 LVKKDELTL-----EGIGQYYVNVEEEQYKYDCLTDLYDSI------SVTQAVIFCNTRR 272
KK T E + Q YV + E D +T L+ I + V C +
Sbjct: 291 STKKTPNTAVLAVPELLQQSYVVLNLE----DKITMLWSFIKNHLKQKIIVFVASCKQAK 346
Query: 273 KVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 332
+ E+ +LR + + A+Y L Q R I ++F S ++ STD+ +RG+D V+
Sbjct: 347 YLYEIFCKLRPGS-PLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNW 405
Query: 333 VINYDLPSNKENY 345
V+ D P + Y
Sbjct: 406 VVQLDCPEDVSQY 418
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 135 bits (339), Expect = 1e-31
Identities = 96/344 (27%), Positives = 177/344 (50%), Gaps = 12/344 (3%)
Query: 11 NQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGT 70
+QI++ + V + F +L L + + F+ + IQ++ I ++G+D+L A++G+
Sbjct: 29 SQIEALSETVDH-FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGS 87
Query: 71 GKTGTFSIAALQNIDEK----IKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIG 126
GKT F + ++N+ K + L+++PTRELA+Q + ++ + IG
Sbjct: 88 GKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIG 147
Query: 127 GTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTGFKEQI 185
G + +E+ E L I+V TPGR+ ID+ + F T ++M ILDEAD +L GF+ +
Sbjct: 148 GNNYKEEKERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTL 206
Query: 186 YNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDEL--TLEGIGQYYVNVE 243
I + LP Q +L SAT V ++ +++P I V +++ T + Q+Y+ V
Sbjct: 207 DAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVP 266
Query: 244 EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQE--RD 301
+ K D L + + ++F ++ ++V + E R +S ++ +Q++ R
Sbjct: 267 LTE-KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRT 325
Query: 302 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ +F S +L TD++ARG+D V VI D P + + Y
Sbjct: 326 EVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 134 bits (337), Expect = 2e-31
Identities = 99/332 (29%), Positives = 159/332 (47%), Gaps = 9/332 (2%)
Query: 44 EPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG---LILAPTR 100
E + IQ+ AI I +D+LA A +G+GKT + LQ + ++ P G +I+APTR
Sbjct: 68 ECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKL--QLHVPGGYRAIIVAPTR 125
Query: 101 ELALQIQKVVMALAIHMDVKV-HACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRI 159
EL QI + L+ +K+ +QE + LR + +GTP R+ I +
Sbjct: 126 ELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGL 185
Query: 160 FKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV-LLSATMPGDVLEVTSKFMK 218
+ ++ F++DEAD + GF EQ +I + ++ L SAT+P V E+
Sbjct: 186 -SFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTV 244
Query: 219 DPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVT-QAVIFCNTRRKVEEL 277
DP+RI+V + + I Q + V + K L + + + + VIF + + L
Sbjct: 245 DPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKAL 304
Query: 278 TERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 337
L + V I+ +L Q +R+ + +FR G +LI+TDLLARGID V +VIN+D
Sbjct: 305 YTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFD 364
Query: 338 LPSNKENYXXXXXXXXXXXXXXXXXNFVTNKD 369
P + +Y F T +D
Sbjct: 365 FPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 133 bits (335), Expect = 4e-31
Identities = 99/345 (28%), Positives = 170/345 (48%), Gaps = 18/345 (5%)
Query: 16 TYDKVVYSFDDLK--LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKT 73
T K + F +LK L E+++ + GF + +Q I + KDV+ A +G+GKT
Sbjct: 8 TITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKT 67
Query: 74 GTFSIAALQNIDEKIKAP------QGLILAPTRELALQIQKVVMALAIHM-DVKVHACIG 126
F + ++ I P G+I++PTREL+ QI KV + +V +G
Sbjct: 68 LAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVG 127
Query: 127 GTSLQEDSEALRG-GAQIIVGTPGRVFDMIDRRIFKT-DNIKMFILDEADEMLSTGFKEQ 184
G ++ D L GA +++GTPGR+ DM+ R F N+++ ILDEAD +L GF++Q
Sbjct: 128 GREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQ 187
Query: 185 IYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQY--YVNV 242
+ I + LP + L SAT V ++ +++ + ++ + + G Y Y+
Sbjct: 188 VNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKC 247
Query: 243 EEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEE----LTERLRENNFTVSAIYSDLQQQ 298
E +Q K L L + V+F T V+ L++ + + + + + Q+
Sbjct: 248 EADQ-KSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQK 306
Query: 299 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKE 343
RDT + F SS +L+ TD+ ARG+D+ + V+ YD P + +
Sbjct: 307 GRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPD 351
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 132 bits (333), Expect = 7e-31
Identities = 108/420 (25%), Positives = 198/420 (46%), Gaps = 81/420 (19%)
Query: 3 DGITDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAI-LPIIEGKD 61
DG ++E + ++ ++L L++ I+ F EP+ IQ+ + +GKD
Sbjct: 172 DGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKD 231
Query: 62 VLAQAQSGTGKTGTFSIAALQNI-DEKIKAPQ-------------------GLILAPTRE 101
V+ A++G+GKT F + LQ + DE+ K + LI+ PTRE
Sbjct: 232 VIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRE 291
Query: 102 LALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMI---DRR 158
LALQ+ + + A ++ VKV +GG ++ L+ +I+V TPGR+++++ ++
Sbjct: 292 LALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKH 351
Query: 159 IFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS---------------------- 196
+ + ++ F+LDEAD M+ G ++ +I +LP T
Sbjct: 352 LVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKK 411
Query: 197 --QVVLLSATM---------------------PGDV--LEVTSK--FMKDPVRIL-VKKD 228
Q + SAT+ G+V +EV S+ M+D V I+ +
Sbjct: 412 KRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTT 471
Query: 229 ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISV---TQAVIFCNTRRKVEELTERLRENN 285
+ I + ++ EE++ LY +SV + ++FC + + ++ L+
Sbjct: 472 SILAPKIEESFIKCEEKEKD----AYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILG 527
Query: 286 FTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
V ++S+++Q+ R + FR+ + ILI+TDL+ARGID++ V +I+Y LP + E Y
Sbjct: 528 LDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVY 587
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 131 bits (330), Expect = 2e-30
Identities = 96/371 (25%), Positives = 177/371 (46%), Gaps = 49/371 (13%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F D L E +L+ I G+ + + +Q+ I +E K+++ +A++G+GKTG F I +Q
Sbjct: 90 TFADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQ 149
Query: 83 NIDEKIKA------PQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
+ + K P +I+APT+EL QI K+ + L+ + + + +E+S
Sbjct: 150 KLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEENSVW 209
Query: 137 LRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS 196
L + ++V TPG++ M R + ++DEAD +LS G++E++ I + LPPT
Sbjct: 210 LEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTY 269
Query: 197 QVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTL---EGIGQYYVNVEEEQYKYDCLT 253
Q ++ SAT+ D+ + FM PV I +K E L + + QY + ++ ++ L
Sbjct: 270 QCLMTSATLKDDMTTLKKLFMTGPV-ITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILV 328
Query: 254 DLYD-SISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
++ + V ++++F NT + +L LR + S + R ++ +F GS
Sbjct: 329 AMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSY 388
Query: 313 RILISTDL--------------------------------------LARGIDVQQVSLVI 334
+I+I++D+ ++RGID VS V+
Sbjct: 389 QIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVV 448
Query: 335 NYDLPSNKENY 345
N+D P + Y
Sbjct: 449 NFDFPETTDAY 459
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 131 bits (330), Expect = 2e-30
Identities = 99/371 (26%), Positives = 173/371 (45%), Gaps = 37/371 (9%)
Query: 29 LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEK- 87
L ++L + + +P IQ +A+ I+ G+D + A++G+GKT F + L++I ++
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Query: 88 -IKA---PQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
++A P GL++APTREL QI + + + + GG+ + + L+ G +I
Sbjct: 463 PVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEI 522
Query: 144 IVGTPGRVFDMIDRRIFKTDNIKM---FILDEADEMLSTGFKEQIYNIFTMLPPTSQVVL 200
+V TPGR+ D++ K N++ ++DEAD M GF+ QI I + P Q VL
Sbjct: 523 VVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 582
Query: 201 LSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSIS 260
SAT P V + K + PV I V G+ VN +
Sbjct: 583 FSATFPRQVETLARKVLNKPVEIQVG---------GRSVVNKD----------------- 616
Query: 261 VTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDL 320
+TQ V + L E L E + + ++ QE+ + +F+S +LI+T +
Sbjct: 617 ITQLVEIRPESERFSRLLELLGEW-YEKGKVLVFVRSQEKS--ISDFKSDVCNLLIATSV 673
Query: 321 LARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFY 380
ARG+DV+++ LV+N+D P++ E+Y F++ D +L +
Sbjct: 674 AARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKAL 733
Query: 381 STQIEELPSSI 391
+ +P +
Sbjct: 734 ELSEQPVPDDV 744
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 129 bits (324), Expect = 8e-30
Identities = 96/344 (27%), Positives = 167/344 (47%), Gaps = 27/344 (7%)
Query: 24 FDDLK--LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAAL 81
F DL+ L +++ + F + +Q I + KDV A +G+GKT F + +
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 82 QNIDEKIKAP------QGLILAPTRELALQIQKVVMALAIHM-DVKVHACIGGTSLQEDS 134
+ + P G+I++PTREL+ QI V + +V +GG ++ D
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 135 EALRG-GAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTML 192
+ + G +++GTPGR+ D+++R I N+++ ILDEAD +L GF+ Q+ I + L
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL 195
Query: 193 PPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVK-----------KDELTLEGIGQYYVN 241
P + L SAT V E+ +++PVR+ V+ + T G+ Y+
Sbjct: 196 PKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYME 255
Query: 242 VEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVE----ELTERLRENNFTVSAIYSDLQQ 297
E ++ K L DL S + ++F T V+ L++ + ++ I+ D++Q
Sbjct: 256 CEADK-KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQ 314
Query: 298 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSN 341
RD + F SS L+ TD+ ARG+D+ + V+ YD P +
Sbjct: 315 NARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQD 358
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 129 bits (323), Expect = 1e-29
Identities = 99/424 (23%), Positives = 191/424 (44%), Gaps = 51/424 (12%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
E + + ++ SF++L L L+R + G +P+ IQQ AI I+EGKDV+A+A++G
Sbjct: 34 EQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTG 93
Query: 70 TGKTGTFSIAALQ------NIDEKIKAPQGLILAPTRELALQIQKVVMAL--AIHMDVKV 121
+GKT + + LQ ++ +K AP IL P+REL Q+ V +L + +K
Sbjct: 94 SGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKA 153
Query: 122 HACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFK----TDNIKMFILDEADEML 177
S + AL G +I+V TP + + + ++++ + +LDEAD +L
Sbjct: 154 VQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLL 213
Query: 178 STGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILV----KKDELTLE 233
S G+++ + ++ +++P Q +L+SAT DV ++ + +P+ + + K+E
Sbjct: 214 SYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPS 273
Query: 234 GIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYS 293
+ Q++++ + L L + + +IF NT L L + + +
Sbjct: 274 NVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNG 333
Query: 294 DLQQQERDTIMKEFRSGSSRILISTD---------------------------------- 319
+L Q R I+++F +G LI+TD
Sbjct: 334 ELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAE 393
Query: 320 -LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELER 378
+ RGID ++V VIN+D+P + Y + ++ ++ +++
Sbjct: 394 FGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKS 453
Query: 379 FYST 382
F ++
Sbjct: 454 FLAS 457
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 127 bits (318), Expect = 4e-29
Identities = 98/325 (30%), Positives = 168/325 (51%), Gaps = 24/325 (7%)
Query: 41 GFVEPSAIQQRAILPIIEGKD-VLAQAQSGTGKTGTFSIAALQNI--------DEKIKAP 91
GF + + +QQR + + ++ + QA++GTGKT F + A +++ KI +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHS- 115
Query: 92 QGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTS-LQEDSEALRGGAQIIVGTPGR 150
+IL+PTRELALQI + L ++V IGG S ++E++ RG A +++ TPGR
Sbjct: 116 --VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGR 173
Query: 151 VFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT-SQVVLLSATMPGD 208
+ D + RI ++ + FILDEAD ++ GF E I NI + T ++ + SATMP
Sbjct: 174 LEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPK 233
Query: 209 VLEVTSKFMKDPVRI---LVKKDELTLEGIGQYYVNVEEEQY---KYDCLTDLYDSISVT 262
V V + ++ L + T E + Q+ + + ++ L L S +
Sbjct: 234 VSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSSNPSS 293
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSA--IYSDLQQQERDTIMKEFRSGSSRILISTDL 320
+ ++F T V+ + L EN+ + ++S L +R +I + FR S IL +TD+
Sbjct: 294 RIIVFLPTISMVDFVGGVL-ENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDV 352
Query: 321 LARGIDVQQVSLVINYDLPSNKENY 345
+ARG+D ++ V+ PSN ++Y
Sbjct: 353 VARGMDFPNITQVVQITGPSNTDDY 377
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 127 bits (318), Expect = 4e-29
Identities = 90/313 (28%), Positives = 157/313 (49%), Gaps = 19/313 (6%)
Query: 48 IQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNI-------DEKI---KAPQGLILA 97
IQ +++G D++ +A++G GKT F + L+++ K+ ++P L+L
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL 181
Query: 98 PTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDR 157
PTRELA Q+ A + + GG S L+ G I+VGTPGR+ D I+R
Sbjct: 182 PTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIER 241
Query: 158 RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS--QVVLLSATMPGDVLEVTSK 215
+ ++ +LDEADEML GF E + I + ++ Q +L SAT+P V ++++
Sbjct: 242 QNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNR 301
Query: 216 FMKDPVRI--LVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISV-TQAVIFCNTRR 272
F+K + LV D++ ++ + + D+ S Q +IF T+
Sbjct: 302 FLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKV 361
Query: 273 KVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 332
+V EL+ L + A++ ++ Q +R+ + FR+G L++T++ ARG+D+ V L
Sbjct: 362 QVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQL 417
Query: 333 VINYDLPSNKENY 345
+I + P E Y
Sbjct: 418 IIQCEPPREVEAY 430
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 126 bits (317), Expect = 5e-29
Identities = 97/335 (28%), Positives = 153/335 (44%), Gaps = 26/335 (7%)
Query: 36 GIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNI------DEKIK 89
G+ GF + +Q I + KDV+ + +G+GKT F I L+ + K K
Sbjct: 21 GLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFK 80
Query: 90 APQ--GLILAPTRELALQIQKVVMALAIH-----MDVKVHACIG---GTSLQEDSEALRG 139
LI+APTREL+ QI+ VV++ H +K +G T + S LR
Sbjct: 81 KAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRN 140
Query: 140 GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199
QI++GTPGRV D + KT M ++DEAD +L F + I +LP +
Sbjct: 141 RPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTG 200
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
L SATM ++ +++PVRI V + Y V + K L + ++
Sbjct: 201 LFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAE-KLQLLVSILNNY 259
Query: 260 SVTQAVIFCNTRRKVE---ELTERLRENNFTVS-----AIYSDLQQQERDTIMKEFR-SG 310
+ +++ T V + L + N V+ +++ LQ R + F S
Sbjct: 260 KFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSL 319
Query: 311 SSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
S+ +L +TD+ ARGID+ V LVI D P+N + +
Sbjct: 320 SNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMF 354
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 126 bits (316), Expect = 6e-29
Identities = 103/445 (23%), Positives = 189/445 (42%), Gaps = 67/445 (15%)
Query: 3 DGITDIDENQIQSTYDKVVY---SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEG 59
D D++E + +K + SF L + +L I GF +P+ IQ++ I I++
Sbjct: 115 DDEDDVNEYFSTNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQS 174
Query: 60 KDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG------LILAPTRELALQIQKVVMAL 113
+D++ A++G+GKT F + + EK+K+ G +IL+P+RELA+Q V
Sbjct: 175 RDIVGMARTGSGKTAAFILPMV----EKLKSHSGKIGARAVILSPSRELAMQTFNVFKDF 230
Query: 114 AIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEA 173
A +++ GG SL+E + +I+ TPGR + +++ + DEA
Sbjct: 231 ARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEA 290
Query: 174 DEMLSTGFKEQIYNI------------FTMLPPTSQVVLLSATMPGDVL---EVTSKFMK 218
D + GF+EQ+ + F+ P S V + A + VL + +K +
Sbjct: 291 DRLFEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSE 350
Query: 219 DPVRILVKKDELTLEGIGQYYV-------------------------------------- 240
+ + + E Y +
Sbjct: 351 NLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKR 410
Query: 241 -NVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQE 299
N ++E+++ + + S ++F TR VE +++ LR+ + +S IY L Q
Sbjct: 411 RNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHA 470
Query: 300 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXX 359
R + FR+G + IL+ TD+ ARG+D+ ++ VINY LP + + +
Sbjct: 471 RKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKG 530
Query: 360 XXXNFVTNKDIGAMRELERFYSTQI 384
+ V ++ + +LE F +I
Sbjct: 531 WAYSIVAENELPYLLDLELFLGKKI 555
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 125 bits (314), Expect = 1e-28
Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 27/317 (8%)
Query: 50 QRAILP-IIEGKDVLAQAQSGTGKTGTFSIAALQNI---DEKIK-------APQGLILAP 98
Q A++P +++G DVL QA++ GKT F + + I DE+ + P LILAP
Sbjct: 408 QGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAP 467
Query: 99 TRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRR 158
TRELA QI + + + D+ V G + +R G I++GT GR+ D +
Sbjct: 468 TRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKS 527
Query: 159 IFKTDNIKMFILDEADEMLSTGFKEQIYNI--------FTMLPPTSQVVLLSATMPGDVL 210
+++ + DEAD +L K+ + ++ F T Q ++ SAT V+
Sbjct: 528 HISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIKDAGFMESAATRQTIMTSATFNASVM 587
Query: 211 EVTSKFMK------DPVRILVKKDELTLEGIGQYYV--NVEEEQYKYDCLTDLYDSISVT 262
V ++ MK + ++I++ L+ +++ + E+ K + +
Sbjct: 588 TVANELMKRLPGQDEMIKIVLANGRLSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTL 647
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLA 322
+ +IF + + + +L ++ D Q R+ ++ +F+S +L++TDLL+
Sbjct: 648 KTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLS 707
Query: 323 RGIDVQQVSLVINYDLP 339
RGIDV + VIN+DLP
Sbjct: 708 RGIDVSDLDRVINFDLP 724
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 124 bits (311), Expect = 2e-28
Identities = 98/403 (24%), Positives = 182/403 (44%), Gaps = 35/403 (8%)
Query: 9 DENQIQSTYDKVVYS---FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQ 65
+ N+ + T + +S F ++ E++++ + F P+ IQ A P+I+GK +
Sbjct: 358 ERNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIA 417
Query: 66 AQSGTGKTGTFSIAALQNI-DEKIK--------APQGLILAPTRELALQIQKVVMALA-I 115
QSG+GKT + + +Q + +E+++ P+ ++L PT ELA Q+ +++
Sbjct: 418 DQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKS 477
Query: 116 HMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADE 175
+ + GG + E L G +++ TPGR +++ I N++ ILDE D
Sbjct: 478 GVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDI 537
Query: 176 MLSTG-FKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEG 234
+ F+ + N+ P T+Q + ++AT+P ++ + D ++ +
Sbjct: 538 LFGDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNA 597
Query: 235 IGQYYVNVEEE-----------QYKYDCLTDLYDSISVTQAVIFCN---TRRKVEELTER 280
+ ++ V+ + Q K L + + V++ +IFCN T RKVE + +R
Sbjct: 598 LEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKR 657
Query: 281 L--RENNFTVSAIYSDLQQQERDTIMKEFRSG----SSRILISTDLLARGIDVQQVSLVI 334
+ +E V ++ L Q+ R T M+EF S +S L+ TD +RGID V V+
Sbjct: 658 VDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVV 717
Query: 335 NYDLPSNKENY-XXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
+D P + Y FV K +G R +
Sbjct: 718 LFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRI 760
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 120 bits (301), Expect = 4e-27
Identities = 104/422 (24%), Positives = 185/422 (43%), Gaps = 87/422 (20%)
Query: 44 EPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFS---IAALQNIDEKIKAPQG---LILA 97
E +++QQ+ I +++GKDVL ++Q+G+GKT ++ + LQ +I+ G L++
Sbjct: 350 ELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIV 409
Query: 98 PTRELALQIQKVVMALA-IHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFD-MI 155
PTREL +Q +++ L + + + +GG S + + LR G I++GTPGR+ D ++
Sbjct: 410 PTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLL 469
Query: 156 DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLP-----------PTSQVVLLSAT 204
FK ++ ILDEAD +L G++ + + + P Q +LLSAT
Sbjct: 470 HTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSAT 529
Query: 205 MPGDVLEVTSKFMKDPVRI----------LVKKD-------ELTLE---GIGQYYVNV-- 242
+ V ++ +K+P+ I L KD E LE G+G+Y +V
Sbjct: 530 LTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTG 589
Query: 243 -----EEEQYKYDCLTDLYDSISVT--------------QAVIFCNTRRKV--------E 275
E Q Y + ++++ +A++F +T V E
Sbjct: 590 VLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNE 649
Query: 276 ELTERLRE-------------------NNFTVSAIYSDLQQQERDTIMKEFRSGSSRILI 316
LT R+ + ++ + Q ER + + FR +S +L+
Sbjct: 650 ALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLL 709
Query: 317 STDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
+TD++ RGIDV + LV+ Y P ++ F+T + +R L
Sbjct: 710 ATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHL 769
Query: 377 ER 378
E+
Sbjct: 770 EK 771
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 120 bits (300), Expect = 5e-27
Identities = 94/381 (24%), Positives = 177/381 (45%), Gaps = 35/381 (9%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F +L+L + +L+ + G+ +P+ IQ AI ++EGKDV+ +A++G+GKT T+++ +Q
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 84 I-DEKIKAPQ----GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQE---DSE 135
I + K+ A + ++LAPT++L Q +KV+ L V S +
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRH 130
Query: 136 ALRGGAQIIVGTPGRVFDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPP 194
AL I+V TP + + + +++ ++DEAD + + G+++ + LPP
Sbjct: 131 ALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPP 190
Query: 195 TSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTD 254
Q VL+SAT+ DV+ + + +PV + +++ EL + + + EE K L
Sbjct: 191 IYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYA 250
Query: 255 LYDSISVT-QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSR 313
L + +++IF N+ + ++ L + + S+L R + +F G+
Sbjct: 251 LLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYD 310
Query: 314 ILISTD-------------------------LLARGIDVQQVSLVINYDLPSNKENYXXX 348
I+I++D +RGID Q V+ VIN+D P + +Y
Sbjct: 311 IIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHR 370
Query: 349 XXXXXXXXXXXXXXNFVTNKD 369
+FV+ K+
Sbjct: 371 AGRTARGNNKGSVLSFVSMKE 391
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 116 bits (291), Expect = 5e-26
Identities = 89/334 (26%), Positives = 163/334 (48%), Gaps = 10/334 (2%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
V F L + ++ RG+ +V+ + +Q AI + G+D+L A++G+GKT F I
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 81 LQNIDEKIKAPQG----LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
L+ + + +P+ +I++PTRELA Q V+ + IGG + +
Sbjct: 130 LEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKE 189
Query: 137 LRGGAQIIVGTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
I+V PGR+ +D F+ +++ ILDEAD +L + FK Q+ I + LP
Sbjct: 190 RVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKH 249
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIG-QYYVNVEEEQYKYDCLTD 254
Q +L SAT V ++ ++DP I V + +T V + + K D L
Sbjct: 250 RQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWS 309
Query: 255 LYDSISVTQAVIFCNTRRKVEELTERLRE--NNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
+ ++ ++F +T+++V+ + E + + +++ + Q++R + +F S
Sbjct: 310 FIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQS 369
Query: 313 RILISTDLLARGIDVQQ-VSLVINYDLPSNKENY 345
+L TD+LARG+D + V V+ D P + +Y
Sbjct: 370 -VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASY 402
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 116 bits (290), Expect = 7e-26
Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 44/264 (16%)
Query: 86 EKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIV 145
E+ P +IL PTRELA+Q K A + +KV GG + E L+ GA+I+V
Sbjct: 112 EEGDGPIAVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVV 171
Query: 146 GTPGRVFDMIDRRIFKTDNIKM---FILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
TPGR+ D++ K N++ +LDEAD M GF+ Q+ VV
Sbjct: 172 CTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQVGG--------KSVVCSD 223
Query: 203 ATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVT 262
T + KF+K LE +G YY
Sbjct: 224 ITQNAVICAEHQKFLK------------LLELLGMYY--------------------DEG 251
Query: 263 QAVIFCNTRRKVEELTERLRENNF-TVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLL 321
+++F + + K +++ ++L + +V++++ + Q +RD+ + +F++G ++L++T +
Sbjct: 252 SSIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSVA 311
Query: 322 ARGIDVQQVSLVINYDLPSNKENY 345
ARG+DV+ + LV+NYD P++ E+Y
Sbjct: 312 ARGLDVKNLILVVNYDCPNHYEDY 335
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 115 bits (289), Expect = 9e-26
Identities = 87/328 (26%), Positives = 154/328 (46%), Gaps = 17/328 (5%)
Query: 9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAI-LPIIEGKDVLAQAQ 67
++ ++ Y +F+ L LL+ I GF P+ IQ AI L + + +D++A+A
Sbjct: 4 EKKSVEGAYIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAA 63
Query: 68 SGTGKTGTFSIAALQNIDEKIKAPQ--------GLILAPTRELALQIQKVVMALAIHMDV 119
+G+GKT + I ++ I E K G+IL PTRELA Q+ V+ L ++
Sbjct: 64 TGSGKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSK 123
Query: 120 KVHACIGGTSLQED--SEALRGGAQIIVGTPGRVFDMIDRRI--FKTDNIKMFILDEADE 175
+ + + + S L +IIVGTPG++ D++ +I + +K ++DE D
Sbjct: 124 DIRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDL 183
Query: 176 MLSTGFKEQIYNIFTMLP--PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDEL--T 231
+L+ G+++ + I LP Q L+SAT+ D+ + KF + P + +E+
Sbjct: 184 VLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKN 243
Query: 232 LEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAI 291
+ QYYV V E C ++ + +IF N + L + + +
Sbjct: 244 QNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCIL 303
Query: 292 YSDLQQQERDTIMKEFRSGSSRILISTD 319
S+L R I+ +F ++LI+TD
Sbjct: 304 NSELPVNSRQHIVDQFNKNVYQLLIATD 331
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 115 bits (289), Expect = 9e-26
Identities = 96/360 (26%), Positives = 164/360 (44%), Gaps = 42/360 (11%)
Query: 23 SFDDLKLKEELLRGIFGYG--FVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAA 80
SF DL L+ +L + V+P+ +Q I ++ G+ V+ A++G+GKT ++ +
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 81 LQNI-------DEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED 133
LQ + I AP+GL+L P+RELA Q++ V L + + V GG ++
Sbjct: 187 LQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRI 246
Query: 134 SEAL--RGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTM 191
L + A ++V TPG ++ + R+ + + +LDEAD +L F E + I
Sbjct: 247 RLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEK 306
Query: 192 -------------LPPTSQVVLLSATMPGDVLEVTSKFMK-DPVRIL-----------VK 226
P +Q+VL+ AT P V ++ +K D V + VK
Sbjct: 307 SHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVK 366
Query: 227 KDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAV-IFCNTRRKVEELTERLRENN 285
+ L L+G + V +++ D + + V +FCN+ V L L ++
Sbjct: 367 QTFLRLKGADKVAELVHILKHR-----DRAERTGPSGTVLVFCNSSSTVNWLGYILDDHK 421
Query: 286 FTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ + R I + F+ S IL+ TD+ +RG+D V LV+NYD P ++Y
Sbjct: 422 IQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDY 481
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 115 bits (289), Expect = 9e-26
Identities = 107/371 (28%), Positives = 179/371 (47%), Gaps = 35/371 (9%)
Query: 2 SDGITDIDENQIQSTYDKV----VYSFDDLK-LKEELLRGIFGYGFVEPSAIQQRAILPI 56
+D D D+ + ST KV + SFD K L ++L + P+ IQ+ + PI
Sbjct: 712 NDDKIDFDQKVVAST-GKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPI 770
Query: 57 IEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIK----------APQGLILAPTRELALQI 106
+ G DV+A A +G+GKT F I + + E+ + +P+ LI+APTREL Q
Sbjct: 771 MHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQT 830
Query: 107 QKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ--IIVGTPGRVFDMIDRRIFKTDN 164
L +K GG S + + LR +Q I+V T GR+ D ++
Sbjct: 831 FTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSK 890
Query: 165 IKMFILDEADEML-STGFKEQIYNIF-TMLPPTSQVVLLSATMPGDVL-EVTSKFMKDPV 221
+K +LDEAD M+ S F E++ I + T Q VL SA+ D+ + KF+K+
Sbjct: 891 MKYIVLDEADRMVDSNDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGY 950
Query: 222 RIL-VKKDELTLEGIGQYYVNVEEEQYKYDCLTDLY--DSISVT----------QAVIFC 268
+L V K E I Q + V + K D + L D +VT + +IF
Sbjct: 951 TMLQVDKFGTANEKIDQKILPVPRTE-KRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFV 1009
Query: 269 NTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 328
N+ + + L + + +++S Q++RD + +FR G + ++++++ ARG+++
Sbjct: 1010 NSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIA 1069
Query: 329 QVSLVINYDLP 339
+ V+NYD+P
Sbjct: 1070 GLDHVVNYDMP 1080
>Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 372
Score = 115 bits (288), Expect = 1e-25
Identities = 59/114 (51%), Positives = 82/114 (71%)
Query: 229 ELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTV 288
ELTLEGI Q +V VE E++K+D DLY+ ++V Q VIFCNT+RKV+ L E++R+ TV
Sbjct: 259 ELTLEGIKQPFVAVEREEWKFDIPCDLYEMLTVIQVVIFCNTKRKVDWLMEKMRDAALTV 318
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNK 342
S+++ D Q+ ++ KEF SG+S LISTD+ A DV QVS++INYDLP +
Sbjct: 319 SSMHRDTPQKGPQSVSKEFPSGTSTGLISTDVWAGRSDVPQVSVIINYDLPKKQ 372
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 114 bits (286), Expect = 2e-25
Identities = 105/402 (26%), Positives = 192/402 (47%), Gaps = 38/402 (9%)
Query: 9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPII--EGKDVLAQA 66
++N + T D ++ ++ L +E+ + I F + +QQ+ I PI+ E DV+A+A
Sbjct: 96 EDNSKEVTLDSLL---EEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARA 152
Query: 67 QSGTGKTGTFSIAALQN-IDEKIKAP---QGLILAPTRELALQIQKVVMALA-IHMDVKV 121
++GTGKT F I Q+ I+ K + + +I+APTR+LALQI+ V + ++ +K
Sbjct: 153 KTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKK 212
Query: 122 HACI---GGTSLQEDSEALRG-GAQIIVGTPGRVFDMIDR---RIFKTDNIKMFILDEAD 174
+AC+ GGT + + I++ TPGR+ D++++ + F+ + K +LDEAD
Sbjct: 213 YACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEAD 270
Query: 175 EMLSTGFKEQIYNIFTMLPPTS-------QVVLLSATMPGDVLEVTSKFMKDPVRILV-- 225
+L GF++ + I +L + + +L SAT+ V ++ + M + +
Sbjct: 271 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 330
Query: 226 --KKDELTLEGIGQYYVNVEEEQYKYDCLTD-----LYDSISVTQAVIFCNTRRKVEELT 278
K + E I Q V E+ + + + S +A+IF T + L
Sbjct: 331 VDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLC 390
Query: 279 ERLR---ENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 335
L+ + + + + + Q +R +++K F+ S IL+ TD+ ARG+D V V+
Sbjct: 391 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 450
Query: 336 YDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELE 377
+PS NY F+ ++ +RELE
Sbjct: 451 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 492
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 114 bits (286), Expect = 2e-25
Identities = 93/366 (25%), Positives = 170/366 (46%), Gaps = 28/366 (7%)
Query: 8 IDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQ 67
++E +++ V ++ L E+L + GF +P IQ I G D++ +A
Sbjct: 108 LEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKAD 167
Query: 68 SGTGKTGTFSIAALQNIDEKIKAP--QGLILAPTRELALQIQKVVMALAIHMDVKVHACI 125
+G+GKT F I L++ + A Q L++APTRELA QI + + +++V +
Sbjct: 168 TGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSIT 227
Query: 126 GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTD--NIKMFILDEADEMLSTGFKE 183
GG ++Q+ L ++V TPGR++ +I+ + IK +LDEAD +L E
Sbjct: 228 GGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFE 287
Query: 184 QIYNIFTML----PPTSQVVLLSATMPGDVLEVTSKFMK--------DPVRILVKKDEL- 230
++ + +L Q + SAT + + K MK P+ ++K+
Sbjct: 288 ELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFF 347
Query: 231 ----TLEGIGQYYVNVEEEQYKYDCL---TDLYDSISVT----QAVIFCNTRRKVEELTE 279
L+ Q V + +C DLY + + ++F N ++ +T
Sbjct: 348 GKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITP 407
Query: 280 RLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 339
L E +++ L Q++R +++F++ +L+ TD+ ARGID+ V+ VI+Y +P
Sbjct: 408 FLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVP 467
Query: 340 SNKENY 345
+ Y
Sbjct: 468 HTADMY 473
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 114 bits (285), Expect = 3e-25
Identities = 85/305 (27%), Positives = 141/305 (45%), Gaps = 9/305 (2%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
+F D L L R I F +P+++Q I +EGKD++AQA++G+GKT + I L+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 83 ------NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEA 136
IDE + L+L PTRELA Q+ V+ L + T+ + +
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 137 --LRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPP 194
L I++ TP R + + D +K ++DEAD MLS G+ E + + LP
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPR 194
Query: 195 TSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTD 254
+Q L+SAT+ ++ + ++P IL KD+ + QY V E+
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPF-ILAVKDKEASGKLTQYVVKCSEQDKFLLAYIL 253
Query: 255 LYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRI 314
L + + +IF N + L L + + S+L R I++++ G +I
Sbjct: 254 LKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQI 313
Query: 315 LISTD 319
+I+TD
Sbjct: 314 IIATD 318
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 114 bits (285), Expect = 3e-25
Identities = 89/340 (26%), Positives = 153/340 (44%), Gaps = 55/340 (16%)
Query: 59 GKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMD 118
G +A AQ+ G +S A +ID P +IL PTREL Q + + A +D
Sbjct: 276 GTQYVAVAQAEDGNLKWWSAAEQLSIDSS--TPLCVILEPTRELVQQTFQNIQTFASVLD 333
Query: 119 VKVHACI---GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADE 175
C+ G ++ + L G I+VGTP RVFD+I T N++ ++DE D+
Sbjct: 334 SPKIRCVTLAAGENMNQILRTLETGCDIVVGTPSRVFDLIHTGKLATKNLQFVVIDEIDQ 393
Query: 176 MLS--TGFKEQIYNIFTMLPPTS------QVVLLSATMPG-DVLEVTSKFMKDPVRILVK 226
L+ QI +IF +LP + QV+ SAT+ +V + M P I +K
Sbjct: 394 FLAGKNNCAHQIESIFRVLPLVAQDGTRRQVIACSATLHNFEVCRFADRHMSFPQWIDLK 453
Query: 227 KDELTLEGIGQYYVNVE-----------------EEQYKYD------------------- 250
+ + +V+ E+ + +D
Sbjct: 454 GADCVSADVHHVVCHVDASEDKQWIRQMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTK 513
Query: 251 CLTDLY-----DSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMK 305
L +Y ++ + +A++FC T+++ + + L++NN + + ++ D +ER + ++
Sbjct: 514 ILKGIYVVRAIHALQMDKAIVFCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLE 573
Query: 306 EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
F+ G R L+ +D++ARG+DVQ V VI+ LP K Y
Sbjct: 574 GFKKGIIRFLVCSDVVARGLDVQGVPFVISVTLPDEKSMY 613
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 113 bits (283), Expect = 4e-25
Identities = 94/351 (26%), Positives = 165/351 (46%), Gaps = 37/351 (10%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF + + + L + GF + + +Q AI ++ KD++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 83 NIDEKIKAPQGL---ILAPTRELALQIQKVVMALAIHMDVKVHA--------CIGGT-SL 130
+ + GL I+APTRELA QI V L + + IGG +L
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 131 QEDSEALRG-GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF 189
D + R +++GTPGR+ +M+ + ++++ ILDEAD ++ GF+ + +I
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSII 179
Query: 190 TMLPPTSQVVLLSATMPGDVLEVTSKFMK-----DPVRILV----KKDELTLEGIGQYYV 240
+ LP + L SATM + S F+K + VR+ V KK +
Sbjct: 180 SQLPKQRRTGLFSATMN----DTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQS 235
Query: 241 NVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEE-----LTERLRENNFTVSAIYSDL 295
V YK C+ L +I +A++F ++ VE LT +L F + A++
Sbjct: 236 LVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKL---PFEIVALHGQQ 292
Query: 296 QQQERDTIMKEF-RSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
Q R ++F +S +L +TD+ +RG+D+ V V+ D P + +++
Sbjct: 293 VQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 113 bits (282), Expect = 6e-25
Identities = 84/344 (24%), Positives = 159/344 (45%), Gaps = 29/344 (8%)
Query: 21 VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKT------G 74
V SF+ +L+ + G+ P+ IQ + EGK+++ + GTGKT G
Sbjct: 31 VLSFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPG 90
Query: 75 TFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDS 134
+ + + + K P LIL RE A+ +Q+ V+ ++++ H +G + Q +
Sbjct: 91 IMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGNSQWQGHA 150
Query: 135 EALRGGAQIIVGTPGRVFDMIDRR--IFKTDNIKMFILDEADEMLSTGFKEQIYNIFTML 192
E ++V + GR+ MID + + + + +LD D M+ G + I + L
Sbjct: 151 EC-----DLLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRL 205
Query: 193 PPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEE------- 245
P +Q+++ S + ++ + +KF+ I V + + IG N+ +
Sbjct: 206 RPHAQLIVSSTSWSSNLKRMANKFLGQYTAIRVGE----INNIGVRLQNIRQRVEVVNGL 261
Query: 246 ---QYKYDCLTDLYDSISVT-QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERD 301
+ LT +YD+ + + VI+ ++ VEEL + +R N I+ QE
Sbjct: 262 SKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIR-NCVPCEGIHGGRTAQENQ 320
Query: 302 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
I+ +F +G+ I+++T + + +DV + VINYD P N + Y
Sbjct: 321 GIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKY 364
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 112 bits (281), Expect = 7e-25
Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 51/307 (16%)
Query: 90 APQGLILAPTRELALQIQKVVMALAIHM---DVKVHACIGGTSLQEDSEALRGGAQIIVG 146
APQ +I+ P+RELA Q + H+ +V+ IGG L+E L G I+VG
Sbjct: 286 APQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVG 345
Query: 147 TPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS------QVVL 200
TPGR+ +MI+ + + + F+LDEAD +L G+ E I + +P + Q+V+
Sbjct: 346 TPGRLEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVV 405
Query: 201 LSATMPG-DVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQ------------- 246
SAT+ +V ++ + M P + +K ++ E + V+ +
Sbjct: 406 CSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGT 465
Query: 247 -------------------------YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERL 281
K + D ++ +A+IFC T++ + L L
Sbjct: 466 DGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFL 525
Query: 282 RE---NNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL 338
R+ +++ ++ D + QER ++ F+ + LI TD+ ARG+D+ + +IN L
Sbjct: 526 RQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTL 585
Query: 339 PSNKENY 345
P +K NY
Sbjct: 586 PDDKTNY 592
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 112 bits (280), Expect = 1e-24
Identities = 110/462 (23%), Positives = 194/462 (41%), Gaps = 102/462 (22%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGK-DVLAQAQSGTGKTGTFSIAAL 81
+++ L + +LR + GF P+ IQ + I GK D+L A++G+GKT F I L
Sbjct: 216 AWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPML 275
Query: 82 QNIDE--------------KIKAPQ----------------------------------- 92
I E K+K Q
Sbjct: 276 AGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQ 335
Query: 93 -------GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIV 145
GL+L PTRELA+Q++ ++A A + ++V A GG ++ + LR I+V
Sbjct: 336 RVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVV 395
Query: 146 GTPGRVFDMI---DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQ----- 197
TPGR++++ +R + K +++ ++DE D M+ G E++ ++ +L Q
Sbjct: 396 ATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQR 455
Query: 198 ---VVLLSATMPGDV--------LEVTSKFMKDPVRILVKKDELTLEGIG---QYYVNVE 243
V + T+ D+ + KF+K V +K E +E +G V++
Sbjct: 456 QNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVD---QKIESLIEELGISQPKIVDIT 512
Query: 244 EEQYKYDCLTD-------------LYDSIS--VTQAVIFCNTRRKVEELTERLRENNFTV 288
Q LT+ LY I + ++FCN+ V+ L +
Sbjct: 513 SSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNP 572
Query: 289 SAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXX 348
+++++ Q++R ++ FR + +LI+TD+ ARG+D+ V VI+Y +P ENY
Sbjct: 573 LPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHR 632
Query: 349 XXXXXXXXXXXXXXNFVTNKDIGAMRELERFYST--QIEELP 388
F+ + G ++ + Y T + E+LP
Sbjct: 633 SGRTARANKHGITVMFM---EPGEVKSYVKLYKTLERTEDLP 671
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 112 bits (279), Expect = 1e-24
Identities = 109/460 (23%), Positives = 197/460 (42%), Gaps = 84/460 (18%)
Query: 7 DIDENQIQSTYDKVVYSFDDLK------------LKEELLRGIFGYGFVEPSAIQQRAIL 54
D+DE+ ++ + DD+ L +L+ + F+ P+ IQ+++I
Sbjct: 144 DVDEDVLKENVFNKDINIDDISPVNLPEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIP 203
Query: 55 PIIEGKDVLAQAQSGTGKTGTFSIAALQ----NIDEKIKAPQGLILAPTRELALQI---- 106
I++G DV+ +A +G+GKT + I ++ N +K K P LI PTRELA Q+
Sbjct: 204 VIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHL 263
Query: 107 QKVVMALAIHMDVKVHACIGGTSLQEDSEALR--GGAQIIVGTPGRVFDMIDR---RIFK 161
+K+ + + + GG S+Q+ L+ QI++ TPGR +++++ I +
Sbjct: 264 KKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKR 323
Query: 162 TDNIKMFILDEADEMLSTGFKEQIYNIFTML--------------PPTSQVVLLSATMPG 207
+ ILDEAD +L G ++ I L Q ++ SAT
Sbjct: 324 FSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATFSI 383
Query: 208 DVLE--VTSKFMKDPVRILVKKDELT------------------LEGIGQYYVNVEEEQY 247
D+ + +S+ +KD R +DEL ++ + V+ + ++
Sbjct: 384 DLFDKLSSSRQVKDR-RFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKES 442
Query: 248 KYDC---LTDLYDSISVTQ----AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQER 300
+C DLY +T +IFCN V++LT L I+S + Q+ R
Sbjct: 443 LIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLNNLGIPAFQIHSSMTQKNR 502
Query: 301 DTIMKEFRSGS----------------SRILISTDLLARGIDVQQVSLVINYDLPSNKEN 344
++ F+ S S +LI++D+ ARG+D+ V VI+Y LP + +
Sbjct: 503 LKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDI 562
Query: 345 YXXXXXXXXXXXXXXXXXNFVT-NKDIGAMRELERFYSTQ 383
Y + + +G +R+L + +T+
Sbjct: 563 YIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATK 602
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 110 bits (276), Expect = 3e-24
Identities = 83/314 (26%), Positives = 141/314 (44%), Gaps = 58/314 (18%)
Query: 90 APQGLILAPTRELALQIQKVVMALAIHMD---VKVHACIGGTSLQEDSEALRGGAQIIVG 146
AP+ LI+ P+RELA Q + ++D ++ IGG + ++ L G I+VG
Sbjct: 286 APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG 345
Query: 147 TPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTS------QVVL 200
TPGR+ D++ ++ +LDEAD +LS G+ + I + +P + QV++
Sbjct: 346 TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV 405
Query: 201 LSATMPG-DVLEVTSKFMKDPVRILVK------------------KDELTLEGIGQYYVN 241
SAT+ DV +++ K M P + +K K + E +G+ ++
Sbjct: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR 465
Query: 242 VEEEQYK-------------YDCLTDLYDSISV--------TQAVIFCNTRRKVEELTER 280
++ K + + L +V QA+IFC T+ + L +
Sbjct: 466 TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY 525
Query: 281 L---------RENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 331
+ + F+ ++ D + ER ++ F+ G R LI TD+ ARGID+ V
Sbjct: 526 FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP 585
Query: 332 LVINYDLPSNKENY 345
VIN LP K+NY
Sbjct: 586 YVINVTLPDEKQNY 599
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 110 bits (275), Expect = 4e-24
Identities = 96/398 (24%), Positives = 174/398 (43%), Gaps = 36/398 (9%)
Query: 20 VVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIA 79
++ F D + LL + +PS IQ ++I + E ++VLA A +G+GKT F
Sbjct: 124 IILRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAF--- 180
Query: 80 ALQNIDEKIKAPQ-------------GLILAPTRELALQIQKVVMALAIHMDVKVHACIG 126
AL IDE ++ Q ++L PTRELA Q + + + G
Sbjct: 181 ALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISAANFSG 240
Query: 127 G-TSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTG----- 180
T +Q A I+V TP R+ +D+ T +++ ++DE+D +
Sbjct: 241 EETDIQH--------ADILVSTPNRIVFHLDK--IDTSSLRWLVVDESDRLFEVVEGQDK 290
Query: 181 -FKEQIYNIFTMLPPT-SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQY 238
F+ Q+ I+ ++V SAT +V + + + + + V + + + Q
Sbjct: 291 CFRNQLAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQK 350
Query: 239 YVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLR--ENNFTVSAIYSDLQ 296
E K + +L + A++F ++ + +L + L ++N V +I S
Sbjct: 351 LTYCGTEDGKKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKS 410
Query: 297 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXX 356
+ERD M+ FR G +L+ T+LL RG+D+ V LVINYDLP++ +Y
Sbjct: 411 DKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAG 470
Query: 357 XXXXXXNFVTNKDIGAMRELERFYSTQIEELPSSISEL 394
+ T+ D+ ++ + ++P + E+
Sbjct: 471 KSGHAVTYFTDADMKYIKSIATVIRQSGFDVPEYLMEM 508
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 110 bits (275), Expect = 4e-24
Identities = 89/317 (28%), Positives = 150/317 (47%), Gaps = 38/317 (11%)
Query: 24 FDDLK--LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAAL 81
F +LK L E+++ + GF + +Q I + KDV+ A +G+GKT F + +
Sbjct: 17 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
Query: 82 QNIDEKIKAP------QGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSE 135
+ I P G+I++PTREL+ QI KV A+ + +L+E+
Sbjct: 77 EIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEE-- 134
Query: 136 ALRGGAQIIVGTPGRVFDMIDRRIFKT-DNIKMFILDEADEMLSTGFKEQIYNIFTMLPP 194
GA +++GTPGR+ DM+ R F N+++ ILDEAD +L GF++Q+ I + LP
Sbjct: 135 ----GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPK 190
Query: 195 TSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTD 254
+ L SAT V ++ +++P Y+ E +Q K L
Sbjct: 191 QRRTGLFSATQTQAVADLAKAGLRNP------------------YLKCEADQ-KSSQLVH 231
Query: 255 LYDSISVTQAVIFCNTRRKVEE----LTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
L + V+F T V+ +++ + + + + Q+ RDT + F
Sbjct: 232 LLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEA 291
Query: 311 SSRILISTDLLARGIDV 327
SS +L+ TD+ ARG+D+
Sbjct: 292 SSGVLLCTDVAARGLDI 308
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 109 bits (273), Expect = 6e-24
Identities = 83/326 (25%), Positives = 151/326 (45%), Gaps = 14/326 (4%)
Query: 28 KLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEK 87
KL ELL +F + + +Q + ++ DV+ ++ +G+GKT F + ++ I
Sbjct: 16 KLGPELLE-VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNA 74
Query: 88 IKAPQ---GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRG-GAQI 143
P LIL+P+REL QI V+ A +++ V GG + ++ + + I
Sbjct: 75 KLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNI 134
Query: 144 IVGTPGRVFDMIDRR----IFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV 199
+V TPGR+F +I K +++ ++DEAD F++ + I + +P +
Sbjct: 135 LVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTG 194
Query: 200 LLSATM--PGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYD 257
L SAT D L V V++ +++ + YYV ++ CL +
Sbjct: 195 LFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQ 254
Query: 258 SISVTQAVIF--CNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
+ F CN+ R ++ ER + A++ R + +K F ++ ++
Sbjct: 255 RTDKKILIFFPSCNSVRYFYKIFERCLGKR-PLFAVHGKCSNPHRASQIKAFSDSTNGVM 313
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSN 341
ISTD++ARGID+ + VI +DLP +
Sbjct: 314 ISTDVMARGIDISDIDWVIQFDLPKH 339
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 109 bits (272), Expect = 8e-24
Identities = 76/240 (31%), Positives = 121/240 (49%), Gaps = 7/240 (2%)
Query: 155 IDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF--TMLPPTSQVV--LLSATMPGDVL 210
+D+ + + + +LDEAD ML GF+ QI I +P + + + SAT P ++
Sbjct: 1 MDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQ 60
Query: 211 EVTSKFMKDP-VRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ-AVIFC 268
+ F+K+ V + V + T E I Q V VEE++ K L DL D+ + ++F
Sbjct: 61 LLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDE-KRSYLMDLLDATGDSSLTLVFV 119
Query: 269 NTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 328
T+R +L L N+ V I+ DL+Q ER+ + FR+G++ IL++T + ARG+D+
Sbjct: 120 ETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIP 179
Query: 329 QVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELP 388
V VINYDLPS+ + Y +F +K+ REL +ELP
Sbjct: 180 NVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELP 239
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 109 bits (272), Expect = 8e-24
Identities = 109/444 (24%), Positives = 187/444 (41%), Gaps = 86/444 (19%)
Query: 26 DLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTF---SIAALQ 82
D KL ++L + GF P+ +Q +AI I+ G+DVL A +GTGKT + I LQ
Sbjct: 37 DTKLSDQLKERM---GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQ 93
Query: 83 NIDEKIKAPQG---LILAPTRELALQIQKVVMAL--AIHMDVKVHACIGGTSLQEDSEAL 137
K+ G L++ PTREL LQ+ + + L H V + +GG ++ L
Sbjct: 94 GHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYV-MGGEKKAKEKARL 152
Query: 138 RGGAQIIVGTPGRVFDMI-DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPP-- 194
R G I++ TPGR+ D + + F N++ I DEAD +L G+ ++I I +L
Sbjct: 153 RKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQ 212
Query: 195 --------------TSQVVLLSATMPGDVLEVTSKFMKDPVRILVK----KDELTLEGIG 236
Q +LLSAT+ V ++ + DPV I + + L++E
Sbjct: 213 NEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPA 272
Query: 237 QYYVNVEE-------------EQY-----------KYDC----------LTDLYDSISVT 262
+ E+ E Y + C L +L++ +
Sbjct: 273 APDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQ 332
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSA------------------IYSDLQQQERDTIM 304
+ V+F +TR V+ L E + ++ ++ ++Q++R +
Sbjct: 333 KVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAF 392
Query: 305 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNF 364
F++ +L+STD+ ARG+D +V +I YD P Y F
Sbjct: 393 GTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLF 452
Query: 365 VTNKDIGAMRELERFYSTQIEELP 388
+ +I ++EL++ + + E P
Sbjct: 453 LQPIEIDYLKELKK-HGASLTEYP 475
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 108 bits (271), Expect = 1e-23
Identities = 92/364 (25%), Positives = 172/364 (46%), Gaps = 48/364 (13%)
Query: 29 LKEELLRGIFGYGFVEPSAIQQRAILP--IIEGKDVLAQAQSGTGKTGTFSIAALQNIDE 86
L E+L I GF EP+ IQ A+LP + + +DVL A++G+GKT F I + + E
Sbjct: 162 LPNEVLEAIEQMGFSEPTEIQS-AVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLE 220
Query: 87 -----------KIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGG-TSLQEDS 134
+++ P+ LI+APTREL +QI K + AL + + +GG ++++
Sbjct: 221 SSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQER 280
Query: 135 EALRGGAQIIVGTPGRVFDMIDRR-----IFKTDNIKMFILDEADEMLSTGFKEQIYNIF 189
+ I+V TPGR++ M+ + + ++K ++DE D M+ G+ ++ +I
Sbjct: 281 IISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHIL 340
Query: 190 TMLPPTS-----QVVLLSATM----PGDVLEVTSKFMKDPVRILVKKDELTLEGIGQ--- 237
+ S Q ++ SAT+ DV E K K+ + + L G+ +
Sbjct: 341 NKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKH 400
Query: 238 YYVNVEEEQYKYDCLTD--------LYDSISVT--------QAVIFCNTRRKVEELTERL 281
+++ + CL + L S+ + ++F N+ L L
Sbjct: 401 KVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVL 460
Query: 282 RENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSN 341
+ N +++ + Q++R +++F + +L++TD+ ARG+D+Q + VI+Y +P
Sbjct: 461 KSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKK 520
Query: 342 KENY 345
E Y
Sbjct: 521 VEIY 524
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 107 bits (266), Expect = 4e-23
Identities = 86/360 (23%), Positives = 160/360 (43%), Gaps = 33/360 (9%)
Query: 9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQS 68
+E+ I+ K+V +F +L L EE++ + P+ IQ I ++E K V+ + +
Sbjct: 99 EESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHT 158
Query: 69 GTGKTGTFSIAALQNIDE-------------KIKAPQGLILAPTRELALQIQKVVMALAI 115
G+GKT + + +Q + E K + P+ ++L PTREL+ Q+ +
Sbjct: 159 GSGKTLAYLLPIVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQV-------CL 211
Query: 116 HMDVKVHACI------GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFI 169
H D HA GG+ ++ ++L ++VGTPGR+ I+ +I +
Sbjct: 212 HQDYH-HARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLV 270
Query: 170 LDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDE 229
LDEAD M GF +I L +VV + V ++ + + +
Sbjct: 271 LDEADTMFDRGFGPEIRKFLAPLNQHIKVVNEIVSFQA-VQKLVDEEFQGIEHLRTSTLH 329
Query: 230 LTLEGIGQYYVNVEEEQYKYDCLTDLYDS--ISVTQAVIFCNTRRKVEELTERLRENNFT 287
+ ++ + + K + L + + ++ ++FCNT + L EN +
Sbjct: 330 KKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQIS 389
Query: 288 VSAIYSDLQQQERDTIMKEFR--SGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+ ++ ++R +K+F+ G L+ TDL ARG+D+ V V+ +D P N +Y
Sbjct: 390 TVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDY 448
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 106 bits (264), Expect = 7e-23
Identities = 104/419 (24%), Positives = 171/419 (39%), Gaps = 70/419 (16%)
Query: 45 PSAIQQRAILPII--EGKDVLAQAQSGTGKTGTFSIAALQ-------NIDEKIKAPQGLI 95
P+AIQ + ++ + KD +AQ+G+GKT + + +Q N+ + +I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 96 LAPTRELALQIQKVVMAL----AIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRV 151
+APTREL QI V L H V + IGG + + +R G I++GTPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 152 FDMIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVV----------- 199
D ++ ++ +LDE D ++ GF+E + I + L S ++
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKV 340
Query: 200 --LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIG-------QYYVNVEEEQYKYD 250
L SATM V ++ +KD + + E T +G Q YV V +
Sbjct: 341 TMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVS 400
Query: 251 CLTDLYDSI-SVTQAVIFCNTRRKV-------------EELTERLRE------------- 283
+ L + S + +IF + V +E+ E ++E
Sbjct: 401 LVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAP 460
Query: 284 -----NNFTVSAIYSDLQQQERDTIMKEFRS---GSSRILISTDLLARGIDVQQVSLVIN 335
V ++ L QQ R + + F S S IL+ TD+ ARG+D+ V LV+
Sbjct: 461 ALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQ 520
Query: 336 YDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELPSSISEL 394
YD P + ++Y F+ K+ + L+ S I E P+ S L
Sbjct: 521 YDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGL 579
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 105 bits (263), Expect = 9e-23
Identities = 94/381 (24%), Positives = 166/381 (42%), Gaps = 67/381 (17%)
Query: 30 KEELLRGIFGYGFVEPSAIQQRAILPIIE-GKDVLAQAQSGTGKTGTFSIAALQNIDEK- 87
K+ + RG V P +Q P+ G DV A +G+GKT ++ I +Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 88 IKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ----- 142
+ + +++ PTREL +Q+ K ++V A G SL+ ++ L G
Sbjct: 203 VPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRID 262
Query: 143 IIVGTPGRVFDMI-DRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFT----------- 190
++V TPGR+ D I + F +++ ++DEAD +L F++ + +
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNK 322
Query: 191 ------------------------MLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVK 226
LP Q ++ SAT+ D ++ S + +P +LV+
Sbjct: 323 SNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQ 382
Query: 227 KDELTLEGIGQ----------------YYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNT 270
++ ++ G+ Y+V+V E K L L S ++T + F +
Sbjct: 383 NKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE--KPILLYHLIHSKNLTNILCFVKS 440
Query: 271 RR---KVEELTERLREN---NFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARG 324
++ L E + E+ +F+ S L + ER I+ F +G +L+ +DL+ARG
Sbjct: 441 NEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARG 500
Query: 325 IDVQQVSLVINYDLPSNKENY 345
IDV VINYD P + +Y
Sbjct: 501 IDVANTQNVINYDPPLSVRSY 521
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 105 bits (263), Expect = 9e-23
Identities = 87/345 (25%), Positives = 157/345 (45%), Gaps = 52/345 (15%)
Query: 9 DENQIQSTYDKVVYSFDDLK-------LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKD 61
D ++ S ++ +FDD + E L+ I F+ + IQ + I ++EG+D
Sbjct: 349 DNREVPSLRLRLTGAFDDTSFASLSNLVNENTLKAIKEMSFMNMTEIQHKTIRSLLEGRD 408
Query: 62 VLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKV 121
+LA A++G+ + T + + P IL+PTRELA+QI +H +
Sbjct: 409 LLAAAKTGSVEL-TVKLKFMPT-----NRPGVFILSPTRELAMQIFGGANTHHMHTYGLI 462
Query: 122 HACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTG 180
+GG + +++ L G IIV TPG + D + F N++ ++DEAD +L G
Sbjct: 463 ---MGGDNTSAEAQKLANGINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVG 519
Query: 181 FKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYV 240
F+E++ I +LP +LLSAT ++ ++D RI +KK
Sbjct: 520 FEEELKQIIKLLPTCRHTMLLSATQ--------TRKVEDLARISLKKGA----------- 560
Query: 241 NVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQER 300
++ + K ++F ++ V+ E L + + AI+ +Q +
Sbjct: 561 -IKNRKRK---------------IMVFFSSSMSVKYHYELLNYMDLPILAIHGKQKQNKG 604
Query: 301 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
T +F S IL+ D+ ARG+D+ +V ++ +D + + Y
Sbjct: 605 TTTFFQFCKADSGILLCMDVAARGLDIPEVDWIVQHDPLDDPKEY 649
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 103 bits (258), Expect = 3e-22
Identities = 89/302 (29%), Positives = 146/302 (47%), Gaps = 24/302 (7%)
Query: 29 LKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNI---D 85
L ++L + GF + +Q I + KDV A+A +G+GKT F I L+ + +
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 86 EKIKAPQ--GLILAPTRELALQIQKVVMALAIHM-DVKVHACIGGTSLQEDSEALRG-GA 141
EK+K Q +I+ PTRELA+QI +V+ H + IGG + ED E + G
Sbjct: 76 EKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135
Query: 142 QIIVGTPGRVFDMIDRRIFKTD------NIKMFILDEADEMLSTGFKEQIYNIFTMLPPT 195
IIV TPGR+ DM R+ D ++ + +LDEAD +L GF+ I I LP
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 196 SQVVLLSATMPGDVLEVTSKFMKDPVRILVKKD-------ELTLEGIGQYYVNVEEEQYK 248
+ L SAT +V + +++PVR+ VK+ + T + YY+ + ++ K
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADE-K 254
Query: 249 YDCLTDLYDSISVTQAVIFCNTRRKVEELTERLR--ENNFTVSAIYSDLQQQERDTIMKE 306
++ L + + ++F +T VE + L + I+ + + +R+ I E
Sbjct: 255 FNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFME 313
Query: 307 FR 308
FR
Sbjct: 314 FR 315
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 99.4 bits (246), Expect = 8e-21
Identities = 74/287 (25%), Positives = 143/287 (49%), Gaps = 39/287 (13%)
Query: 93 GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVF 152
GL+L PTRELA+Q+++ + A+A +K +GG S Q+ L +I+V TPGR++
Sbjct: 390 GLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLW 449
Query: 153 DMIDRRIFKTDNIKM---FILDEADEMLSTGFKEQIYNIFTML-----PPTSQVVLLSAT 204
++I + + N++ ++DEAD M+ G ++ + ML P Q ++ SAT
Sbjct: 450 ELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSAT 509
Query: 205 M------PGDVL--EVTSKFMK---------------DPVRILVKKDELTLEGIGQYYVN 241
+ P +L + T K K P I + ++E T+E + + ++
Sbjct: 510 LTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIH 569
Query: 242 VEEEQ---YKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQ 298
E ++ Y Y L ++++F N+ ++ L+ L+ + +++ + Q+
Sbjct: 570 CETDEKDFYLYYFLMQY-----PGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQK 624
Query: 299 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+R +++F +L++TD+ ARG+D+ +V VI+Y +P E Y
Sbjct: 625 QRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIY 671
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 99.4 bits (246), Expect = 8e-21
Identities = 75/315 (23%), Positives = 148/315 (46%), Gaps = 19/315 (6%)
Query: 50 QRAILPIIEGKD-VLAQAQSGTGKTGTFSIAALQNI-------DEKIKAPQGLILAPTRE 101
Q+ +P++ G + L A++G GKT T+ + + + + K+ P+ LIL P RE
Sbjct: 136 QKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTPGRE 195
Query: 102 LALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFK 161
LA QI V L ++KV + +GG + Q I+V T G + ++ I++
Sbjct: 196 LATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYR 255
Query: 162 TDNIKMFILDEADEMLSTGFKEQIYNIFTMLP--------PTSQVVLLSATMPGDVLEVT 213
+ ++ +LDEAD +L F +++ P +Q++L SATMP + E+
Sbjct: 256 MEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREIL 315
Query: 214 SKFMK-DPVRILVKKD-ELTLEGIGQYYVNVEEEQYKYDCLTDL-YDSISVTQAVIFCNT 270
K + D +R +V + + Q ++ + + L+ + +D ++F N
Sbjct: 316 HKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAKRRPLIVFSNK 375
Query: 271 RRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 330
+ ++ L + + D+ + R ++F++G +L +TD+ +RG+D +
Sbjct: 376 STTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRA 435
Query: 331 SLVINYDLPSNKENY 345
V+N+D P + +Y
Sbjct: 436 RHVVNFDFPLHVSDY 450
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 98.2 bits (243), Expect = 2e-20
Identities = 85/316 (26%), Positives = 146/316 (45%), Gaps = 48/316 (15%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
SF + L LLR I G P+ IQ++ I I+E + ++ ++G+GKT + I A+Q
Sbjct: 11 SFKTMGLDYRLLRNILYEG---PTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAIQ 67
Query: 83 NIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ 142
I + L++ PT+EL +Q ++V+ LA ++ EA +
Sbjct: 68 RA---ISGEKTLVIVPTKELVIQARRVLKRLARGIE----------------EAWK---L 105
Query: 143 IIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLS 202
I + TPG++ M + M ++DE D +L + +++ + Q V S
Sbjct: 106 IEICTPGKIEGM---------SADMLVVDEIDRILEEPSLKSVFDRINE-SLSCQKVFFS 155
Query: 203 ATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVT 262
AT+P L + +V+ + E + ++ + E K L + D T
Sbjct: 156 ATLPDHPLNMK----------VVEIETRINETVKHFFFYIPSES-KEAALLRILDKTRKT 204
Query: 263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLA 322
++F T+ VE L E L +NNF IYS + + R ++F + IL+ TD+ A
Sbjct: 205 --IVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTDVAA 262
Query: 323 RGIDVQQVSLVINYDL 338
RG+D+ + V+NYDL
Sbjct: 263 RGLDIPYLDTVVNYDL 278
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 97.4 bits (241), Expect = 3e-20
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 7/254 (2%)
Query: 24 FDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQN 83
F +L L L+ G +P+ +Q I I+EG+D L A++G+GKT F + LQ
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 84 IDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQI 143
+ E L+L PTRELA QI + L + +K +GG + + L +
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 144 IVGTPGRVFDMI-DRRIFKTDNIKMFILDEADEMLSTG---FKEQIYNIFTMLPPTSQVV 199
++ TPGR+ D + F I+ ++DEAD +L G F + I +P Q +
Sbjct: 124 VIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTL 183
Query: 200 LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEE---EQYKYDCLTDLY 256
L SAT+ + E+ P + T+E + Q Y+ V E + Y +
Sbjct: 184 LFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQ 243
Query: 257 DSISVTQAVIFCNT 270
D +IF NT
Sbjct: 244 DEHEDWSIIIFTNT 257
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 96.7 bits (239), Expect = 5e-20
Identities = 93/401 (23%), Positives = 171/401 (42%), Gaps = 71/401 (17%)
Query: 43 VEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAP-QGLILAPTRE 101
V P ++ A P +D+ A +G+GKT F+I +Q + +++ + L++ P E
Sbjct: 167 VIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAE 226
Query: 102 LALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEAL--------RGGAQIIVGTPGRVFD 153
LALQ+ +V+ L +++V L+++ E L A I+V TPGR+ D
Sbjct: 227 LALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVD 286
Query: 154 MIDR-RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEV 212
+ + F ++K ++DEAD ++ F+ +Y++ + + T+ +L P E+
Sbjct: 287 HLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAPLCYAEL 346
Query: 213 TSKFMKDPVRIL------------------------------VKKDELTLEG-------- 234
+ F K P ++L V KD T EG
Sbjct: 347 QASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKD-ATEEGADTEALTD 405
Query: 235 ----IGQYYVNVE-EEQYKYDCLTD----------LYDSISVTQAVIFCNTRRKVEELTE 279
+G+Y E EQY C+T+ L + + + F N+ + LT
Sbjct: 406 PGQFVGRYTTPAELTEQY---CVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTF 462
Query: 280 RLR----ENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 335
L+ + + VS + +L + R+ +++F +G LI +D LARGIDV V +V++
Sbjct: 463 VLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLS 522
Query: 336 YDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
Y+ P + Y +T +D+ +++
Sbjct: 523 YETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTLFKKI 563
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 96.3 bits (238), Expect = 7e-20
Identities = 61/259 (23%), Positives = 114/259 (43%), Gaps = 20/259 (7%)
Query: 123 ACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFK 182
A IGG S ++ L G +I++ TPG + D+++ R +LDEAD M+ GF+
Sbjct: 365 AVIGGISREDWGFRLLMGCEIVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMIDVGFE 424
Query: 183 EQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDE---LTLEGIGQYY 239
+ I +P + E +DP ++L + E + Q +
Sbjct: 425 PDVQKILEHMPQS---------------EARHDESEDPEKMLANFESGKRKPHERVEQVF 469
Query: 240 VNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQE 299
+ E E+ K L ++ IF N ++ + L + L + + ++ Q++
Sbjct: 470 LMSESEKRKK--LLEILKQGFDPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQ 527
Query: 300 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXX 359
R+ + + G+ +L++TD+ GID+Q VS+V+NYD+ N ++Y
Sbjct: 528 REFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSG 587
Query: 360 XXXNFVTNKDIGAMRELER 378
F+T +D EL++
Sbjct: 588 VAITFLTKEDSAVFYELKQ 606
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 93.2 bits (230), Expect = 6e-19
Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 33/341 (9%)
Query: 2 SDGITDIDENQIQSTYDKV----VYSFDDLK-LKEELLRGIFGYGFVEPSAIQQRAILPI 56
+D D D+ + ST KV + SFD K L ++L + P+ IQ+ + PI
Sbjct: 675 NDDKIDFDQKVVAST-GKVEIPDMASFDGFKVLPQDLHDNLKRMKMNRPTPIQRASFFPI 733
Query: 57 IEGKDVLAQAQSGTGKTGTFSIAAL----------QNIDEKIKAPQGLILAPTRELALQI 106
+ G DV+A A +G+GKT F I + +++ ++ +P+ LI+APTREL Q
Sbjct: 734 MHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQT 793
Query: 107 QKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQ--IIVGTPGRVFDMIDRRIFKTDN 164
L +K GG S + + LR +Q I+V T GR+ D ++
Sbjct: 794 FTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSK 853
Query: 165 IKMFILDEADEML-STGFKEQIYNIF-TMLPPTSQVVLLSATMPGDV-LEVTSKFMKDPV 221
+K +LDEAD M+ S F E++ I + T Q VL SA+ D+ + KF+K+
Sbjct: 854 MKYIVLDEADRMVDSIDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGY 913
Query: 222 RIL-VKKDELTLEGIGQYYVNVEEEQ-----YKY-----DCLTDLYDS-ISVTQAVIFCN 269
+L V K E I Q + V + YK + +T L D+ I + +IF N
Sbjct: 914 TMLQVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVN 973
Query: 270 TRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSG 310
+ + + L + + +++S Q++RD + +FR G
Sbjct: 974 SVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRG 1014
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 92.4 bits (228), Expect = 1e-18
Identities = 80/324 (24%), Positives = 143/324 (43%), Gaps = 56/324 (17%)
Query: 63 LAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVH 122
L Q G+GKT T+ + I+ + + Q +I+ PTREL +Q+ KV LA ++ V
Sbjct: 75 LRQICQGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVK 134
Query: 123 ACI------GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEM 176
C GGT + S I+V T + M+++ IF+ D++++ ++DE D +
Sbjct: 135 GCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFL 194
Query: 177 LSTGFKEQIYNIFTMLPPTS-----QVVLLSATMP----------------GDVLEV-TS 214
+ +Q+ ++ +L S Q V SA++P DV+ V S
Sbjct: 195 FYS--SKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVS 252
Query: 215 KFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRK- 273
M P+ +L + +V E+ K+ L L +S + A+IF + +
Sbjct: 253 AIMPMPLCLLHR------------FVMCEKTN-KHQVLLALLESDAPESAIIFVGEQSEK 299
Query: 274 ------------VEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLL 321
+ E + + + + + D+ R + E R G +L+STD+
Sbjct: 300 SKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIA 359
Query: 322 ARGIDVQQVSLVINYDLPSNKENY 345
ARGID+ + + + N+DLP +Y
Sbjct: 360 ARGIDLPETTHIFNFDLPQTVTDY 383
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 92.0 bits (227), Expect = 1e-18
Identities = 83/333 (24%), Positives = 156/333 (45%), Gaps = 55/333 (16%)
Query: 38 FGYGFVEPSAIQ-QRAILPII---EGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG 93
F G + P QR ++P I EG DV+++ +G+GKT ++ + + ++ K +
Sbjct: 70 FNKGLLPPHPTDVQRFVIPYILAGEGVDVISE--TGSGKTLSYVLPHIHLLESGDK--RL 125
Query: 94 LILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFD 153
L++ PTREL Q+ +V + + +++ G S++ + + + TPGR+ +
Sbjct: 126 LVIVPTRELVSQVGQVFRKFSEGL-LRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRE 184
Query: 154 MIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVT 213
+++ + + ++DEAD ++ + + I + P EV
Sbjct: 185 LLELK--SIGGFEYVVVDEADRLMQHDIRSDVTFILERMKP----------------EVA 226
Query: 214 SKFMKDP------VRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDS--------- 258
S F P RILV + + + ++++ VE+++ K L ++ S
Sbjct: 227 SFFSATPFEWSGGTRILVGNVSVGRD-VEEFFMYVEKKE-KMQVLGEILVSCEGWLAKNM 284
Query: 259 ------ISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSS 312
+ V + ++FCN+ R E L +R R+ + ++S QER ++ E G
Sbjct: 285 GVDRNGLEVKKIIVFCNSIRTCENLHKRFRQ----LLVLHSRRTMQERKAVI-EALEGER 339
Query: 313 RILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+LI+TDL RGID++ V LV+NYDLP + Y
Sbjct: 340 AVLIATDLGGRGIDIKDVDLVVNYDLPRAVDGY 372
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 89.7 bits (221), Expect = 7e-18
Identities = 60/191 (31%), Positives = 98/191 (50%), Gaps = 11/191 (5%)
Query: 46 SAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNID------EKIKAPQGLILAPT 99
+++Q+++I ++EG+D L ++Q+G+GKT + I +Q++ ++ P L+L PT
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 100 RELALQIQKVVMALAIHMD-VKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMI-DR 157
RELALQ V L + +GG + + LR G I++ TPGR+ D I
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKST 374
Query: 158 RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV---VLLSATMPGDVLEVTS 214
+ ++ + DEAD +L GF++ I I + Q VLLSAT+ V +
Sbjct: 375 KNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLAD 434
Query: 215 KFMKDPVRILV 225
+ DPV I V
Sbjct: 435 ISLHDPVSISV 445
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 89.7 bits (221), Expect = 7e-18
Identities = 60/191 (31%), Positives = 98/191 (50%), Gaps = 11/191 (5%)
Query: 46 SAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNID------EKIKAPQGLILAPT 99
+++Q+++I ++EG+D L ++Q+G+GKT + I +Q++ ++ P L+L PT
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 100 RELALQIQKVVMALAIHMD-VKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMI-DR 157
RELALQ V L + +GG + + LR G I++ TPGR+ D I
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKST 374
Query: 158 RIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQV---VLLSATMPGDVLEVTS 214
+ ++ + DEAD +L GF++ I I + Q VLLSAT+ V +
Sbjct: 375 KNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLAD 434
Query: 215 KFMKDPVRILV 225
+ DPV I V
Sbjct: 435 ISLHDPVSISV 445
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 89.0 bits (219), Expect = 1e-17
Identities = 75/324 (23%), Positives = 146/324 (44%), Gaps = 39/324 (12%)
Query: 61 DVLAQAQSGTGKTGTFSIAALQNIDEK-IKAPQGLILAPTRELALQIQKVVMALAIHMDV 119
D+L A +G+GKT +SI +Q + ++ I + +I+ PT+ L Q+ + L +
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSL 288
Query: 120 KVHACIGGTSLQEDSEALRG-GAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLS 178
V SL+++ + L I++ TPGR+ D ++ + N+K I+DEAD +L+
Sbjct: 289 IVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLN 348
Query: 179 TGFKEQIYNIFT--------MLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDEL 230
F+ + + LP ++ SAT+ + ++ + P L + D+L
Sbjct: 349 QSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKL 408
Query: 231 TL--EGIGQYYVNVEEEQYKYDCLTDLYD-----------------------SISVTQAV 265
+ ++ +N+ + Y L LY SI +++ +
Sbjct: 409 YQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSKLL 468
Query: 266 IFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEF----RSGSSRILISTDLL 321
R + + L+ +++++ S+ + E I+ F S ILI+TD++
Sbjct: 469 QLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILITTDIM 528
Query: 322 ARGIDVQQVSLVINYDLPSNKENY 345
+RGID+ ++ VINYD P + + Y
Sbjct: 529 SRGIDINDITQVINYDPPMSSQQY 552
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 85.5 bits (210), Expect = 1e-16
Identities = 98/382 (25%), Positives = 160/382 (41%), Gaps = 80/382 (20%)
Query: 44 EPSAIQQRAILPII--EGK-DVLAQAQSGTGKTGTFS---IAALQNIDEKIKAPQG---L 94
+P++IQ++AI II GK D AQ+G+GKT ++ I+ + N+D + G L
Sbjct: 166 KPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFAL 225
Query: 95 ILAPTRELALQIQKVVMALAIHMDVKVHAC-IGGTSLQEDSEALRGGAQIIVGTPGRVFD 153
++APTRELA QI V L V IGG + + LR G I+GTPGRV D
Sbjct: 226 VIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLD 285
Query: 154 MI-DRRIFK---TDNIKMFILDEADEMLSTGFKEQIYNI-------------FTMLPPTS 196
+ + ++ K + +++ +LDE D+++ GF E I I F LP
Sbjct: 286 HLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKL 345
Query: 197 QVVLLSATMPGDVLEVTSKFMKD-----------------------------PVRILVKK 227
+L SAT+ V + + +KD P ++ +
Sbjct: 346 VHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVT 405
Query: 228 DELTLEGIGQYYVNVEEEQYKY---------DCLTDLYDSISVTQAVIFCNTRRKVEELT 278
TL I + ++ ++ D + YD+ S + T V LT
Sbjct: 406 LAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSVRLLT 465
Query: 279 E---------RLRENNFTVSAIYSDLQQQERDTIMKEF------RSGSSRILISTDLLAR 323
+ R+ + + ++ L QQ R + ++ F G I+ TD+ +R
Sbjct: 466 KGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASR 525
Query: 324 GIDVQQVSLVINYDLPSNKENY 345
G+D+ V VI D P E++
Sbjct: 526 GLDLPHVGSVIELDPPFAVEDH 547
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 85.1 bits (209), Expect = 2e-16
Identities = 78/344 (22%), Positives = 151/344 (43%), Gaps = 64/344 (18%)
Query: 60 KDVLAQAQSGTGKTGTFSIAALQNIDEK-IKAPQGLILAPTRELALQIQKVVMALAIHMD 118
+D+ + +G+GKT ++++ +Q + + ++ + L++ PTR+LALQ++ V A+A +
Sbjct: 25 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 84
Query: 119 VKVHACIGGTSLQED---------------------SEALRGGAQIIVGTPGRVFDMIDR 157
+ V + +G +S+ + S+ L I+V TPGR+ D I+
Sbjct: 85 LSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINN 144
Query: 158 -RIFKTDNIKMFILDEADEMLSTGFK--------------EQIYNIFTMLPPTS----QV 198
+ F ++++ ++DE D +L ++ + ++ FT P++ Q
Sbjct: 145 TKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQT 204
Query: 199 V--------------------LLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQY 238
V +LSAT+ D ++ + P+ + L +
Sbjct: 205 VRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLEC 264
Query: 239 YVNVEEEQYKYDCLTDLYDSISVTQAVIFCN---TRRKVEELTERLRENNFTVSAIYSDL 295
+ E K L L S + +IF + T R++ +L + L
Sbjct: 265 LRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGL 324
Query: 296 QQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 339
Q R +K FR G ++L+++D L RG+DV+ V+ VINYD+P
Sbjct: 325 NQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMP 368
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 82.4 bits (202), Expect = 1e-15
Identities = 49/157 (31%), Positives = 85/157 (53%), Gaps = 6/157 (3%)
Query: 6 TDIDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQ 65
T NQ+++T + L K LL IF G+ +PS Q+ +I + G+D+LA+
Sbjct: 38 TQQQTNQLKNTNTIIA-----LNHKRRLLMRIFEMGWKKPSPFQEESIPIALSGRDILAR 92
Query: 66 AQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHM-DVKVHAC 124
A++GTGK+ I L+ +D K Q +++ PT ALQ+ ++ + ++ HM VKV
Sbjct: 93 AKNGTGKSSAHDIPLLKRLDLKKDTIQTIVIVPTGGPALQVSQICIQVSKHMGGVKVVMT 152
Query: 125 IGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFK 161
GGT+ +D L +++ PGR+ ++I + + K
Sbjct: 153 TGGTNSGDDVLRLDDTVHMVIAAPGRILNLIKKGVAK 189
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 82.4 bits (202), Expect = 1e-15
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 22/240 (9%)
Query: 120 KVHACI--GGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEML 177
+VH C+ G + + + L G ++V TPG + D+++R D K +LDEAD ML
Sbjct: 216 RVHPCVVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMERGKIGLDFCKYLVLDEADRML 275
Query: 178 STGFKEQIYNIFTM----LPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLE 233
GF QI+ I L +++ SAT P ++ + F+ + + + V + T E
Sbjct: 276 DMGFGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQMLARDFLDEYIFLAVGRVGSTSE 335
Query: 234 GIGQYYVNVEEEQYKYDCLTDLYDSISV-TQAVIFCNTRRKVEELTERLRENNFTVSAIY 292
I Q V VEE K L DL ++ + ++F T++ + L L + ++I+
Sbjct: 336 TITQEVVWVEEPD-KRSFLLDLLNAPGKDSLTLVFVETKKGEDSLENFLYHEVYPCTSIH 394
Query: 293 SDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV-------SLVINYDLPSNKENY 345
D Q++R+ G S +L+ + + G + N+DLPS+ E Y
Sbjct: 395 GDQSQRDRE-------GGPSSVLLGENPNSSGYSCGSMKTRHFKCETCFNFDLPSDIEEY 447
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 82.4 bits (202), Expect = 1e-15
Identities = 95/412 (23%), Positives = 171/412 (41%), Gaps = 52/412 (12%)
Query: 10 ENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSG 69
E + ++ SF+DLK K F P Q+ I ++ +V+ QA +G
Sbjct: 22 EYNVDGERHPLLCSFEDLKTKVP---------FDSPLLTQKVVIPYFLKKTNVIVQAFTG 72
Query: 70 TGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIG--- 126
+GKT ++ + ++ + ++ G IL P + L Q+ +VV + H +KV G
Sbjct: 73 SGKTLSYCLPLVEMA--RGRSLFGAILVPGKPLVRQVYRVVREIK-HEGLKVVGVYGDGR 129
Query: 127 ----------GTSLQED---------SEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKM 167
G +Q+ +E+LR A++++GTP V ++ + N+
Sbjct: 130 EDFLVEEGEKGELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGLMSMSEIR--NVTH 187
Query: 168 FILDEADEMLS---TGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRIL 224
++DEAD +++ G I ++ M + SATM V EV + V+ +
Sbjct: 188 LVIDEADLLINPETVGVFASILSVIEM--EDIHISCFSATMNEYVSEVI-----ETVKSI 240
Query: 225 VKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLREN 284
K ++ I +V + K+ L + + +IF + E L+ L +
Sbjct: 241 TKIRVVSKRLIDHEFVFGTSRKIKHLSLLQIIADGIESPTLIFVKDEKTGEALSMLLGK- 299
Query: 285 NFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKEN 344
SA+Y + Q+ ++ FR L +TD L+RGID + VINYDLPS K
Sbjct: 300 ----SAVYRE-DQEGSGEVLDGFRLKKIWYLFTTDSLSRGIDFYNIRSVINYDLPSTKTQ 354
Query: 345 YXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERFYSTQIEELPSSISELFD 396
+ +++D G + + F E+P I+ + +
Sbjct: 355 FVHRIGRINRNCQGQKIYTIYSSEDFGRIGVVAEFLEENGHEVPKHITRIIE 406
>Hs17459025 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 202
Score = 74.3 bits (181), Expect = 3e-13
Identities = 53/156 (33%), Positives = 75/156 (47%), Gaps = 47/156 (30%)
Query: 125 IGGTSLQEDSEALRGGA-QIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKE 183
IGGT + + + L+ A II GTPG V DM++ R IK+F+LD+ADEMLS GF++
Sbjct: 55 IGGTHVCAEVQKLQMEAPHIIGGTPGPVCDMLNWRYLSPKYIKIFVLDKADEMLSCGFRD 114
Query: 184 QIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVE 243
QIY+IF L N+
Sbjct: 115 QIYDIFQKLNN----------------------------------------------NIL 128
Query: 244 EEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTE 279
++K D L DL+++++VTQA +F NTRRKV L +
Sbjct: 129 FAEWKQDTLYDLHETLTVTQAGVFINTRRKVSLLID 164
>ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase
Length = 766
Score = 65.9 bits (159), Expect = 1e-10
Identities = 77/361 (21%), Positives = 156/361 (42%), Gaps = 51/361 (14%)
Query: 8 IDENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQ 67
++E+ + S+ D S ++ L+E + E Q+ I + GKDV
Sbjct: 208 LEESSLSSSEDSEAKSIEEFYLREV-------FKMKEFRTNQREVIQACLSGKDVFVLMP 260
Query: 68 SGTGKTGTFSIAAL--QNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVK----- 120
+G GK+ + + AL I + L+ R L +QK ++AL I+ ++
Sbjct: 261 TGGGKSICYQLPALVYDGITIVVSPLLSLVQDQIRNL---LQKGILALPINSNLSRAERD 317
Query: 121 -VHACIGGTSLQEDSEALRGGAQIIVGTP------GRVFDMIDRRIFKTDNIKMFILDEA 173
V +GG L +I TP G D++ + + +K F++DEA
Sbjct: 318 LVFQVLGGDELI---------CKIFYVTPELIAKSGHFHDVLSGLVCR-GRLKRFVIDEA 367
Query: 174 DEMLSTG--FKEQIYNIFTMLP--PTSQVVLLSAT----MPGDVLEVTSKFMKDPVRILV 225
+ G F+ + +M P+ ++ L+AT + D+LE + ++
Sbjct: 368 HCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVEMDILENLGIRGCETFKMSF 427
Query: 226 KKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENN 285
+ L +Y V + + D + + +I+C ++++ E ++E+L
Sbjct: 428 NRSNL------RYEVRAKTSTVELDIASFVQTHFPDCCGIIYCTSKKECEMISEKL--GK 479
Query: 286 FTVSAIY-SDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKEN 344
+ +A Y + L + ER+++ +++ G +++++T GID + V VI+Y +P + E
Sbjct: 480 YMGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKDVRFVIHYCIPKSLEG 539
Query: 345 Y 345
Y
Sbjct: 540 Y 540
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 60.1 bits (144), Expect = 6e-09
Identities = 67/350 (19%), Positives = 138/350 (39%), Gaps = 76/350 (21%)
Query: 66 AQSGTGKTGTFSIAALQNID-EKIKAPQ------------GLILAPTRELALQIQKVVMA 112
A++G+GKT + I + + ++++ P+ +IL PT EL Q+ + V
Sbjct: 164 AETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELVDQVYETVSK 223
Query: 113 LAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMID-RRIFKTDNIK----M 167
+ + TS ++ E ++ I+V TPG++ ++ R I + D +
Sbjct: 224 TKTLLGLNSFKWDKATSYRDLLENIKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGF 283
Query: 168 FILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKK 227
+LDEAD +L + E+ ++ +P + ++ SAT+P + + + V I+ +
Sbjct: 284 VVLDEADTLLDRSWLEETHSAIKRIPNINHLIFCSATIPQEFNKTMQRLFPTVVPIMTPR 343
Query: 228 DELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISV-----------TQAVIFCNTRRKVEE 276
+ +N +K + L ++ + +IF N ++ V E
Sbjct: 344 LHKLPFALDFKVINSALSPFKGSKIKALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPE 403
Query: 277 LTERLRE--NNFTVSAIYSDLQQQERDTIM-----------------------KEFR--- 308
+ L + + + D ++ + IM K+F
Sbjct: 404 IVNLLNKKFGHNAIGLTGEDTFEERSEKIMPFLSPPRPLSEVVAQSTSPPTSLKKFEIPD 463
Query: 309 -------------------SGSSRILISTDLLARGIDVQQVSLVINYDLP 339
+ S +L++TDL+ARG++ + V V+ YD+P
Sbjct: 464 SNIVIGKLKNTNSNGTAPSNKSLHVLVTTDLMARGLNFKGVRNVVLYDVP 513
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 55.1 bits (131), Expect = 2e-07
Identities = 35/107 (32%), Positives = 58/107 (53%), Gaps = 9/107 (8%)
Query: 125 IGGTSLQEDSEALRGGAQIIVGTPGRVFD-MIDRRIFKTDNIKMFILDEADEMLSTGFKE 183
+GG++ ++ L G IIV T GR+ D M + F N++ ++DEAD +L GF+E
Sbjct: 1 MGGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 60
Query: 184 QIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDEL 230
++ I +L Q +L SAT ++ ++D RI +KK+ L
Sbjct: 61 ELKQIIKLLLTHRQTMLFSATQ--------TQKVEDLARISLKKEPL 99
>SPAC2G11.12 [L] KOG0351 ATP-dependent DNA helicase
Length = 1328
Score = 54.3 bits (129), Expect = 3e-07
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 248 KYDCLTDLYDSISV----TQAVIFCNTRRKVEELTERLRENNFTVSA--IYSDLQQQERD 301
K D T+LY IS +I+C +R E++ +LR N++ + A ++ L++ ER
Sbjct: 725 KKDLYTELYRFISNGHLHESGIIYCLSRTSCEQVAAKLR-NDYGLKAWHYHAGLEKVERQ 783
Query: 302 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
I E++SGS +I+++T G+D V VI++ P + E Y
Sbjct: 784 RIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGY 827
>SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase
Length = 1887
Score = 54.3 bits (129), Expect = 3e-07
Identities = 50/188 (26%), Positives = 93/188 (48%), Gaps = 13/188 (6%)
Query: 169 ILDEADEMLSTG-FKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKK 227
++DEA +L++G ++ + + + + LLSAT P LE+ ++ ++++
Sbjct: 1320 VIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQ-LEMVARQTFCTNFYVLRE 1378
Query: 228 DELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ----AVIFCNTRRKVEELTERLRE 283
E I + + ++ D T L V + A+IFC T++ VE + RL +
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRT-LMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQ 1437
Query: 284 NNF---TVSAIYS-DLQQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLVINYD 337
++ T IY+ D+ +ER FR+ G +RI+I+T GI+ V LV++Y
Sbjct: 1438 SDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYG 1497
Query: 338 LPSNKENY 345
LP++ +Y
Sbjct: 1498 LPASSMDY 1505
>7299503 [L] KOG0351 ATP-dependent DNA helicase
Length = 1487
Score = 53.9 bits (128), Expect = 4e-07
Identities = 72/363 (19%), Positives = 155/363 (41%), Gaps = 63/363 (17%)
Query: 18 DKVVYSFDDLKLKEE--LLRGI---FGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGK 72
D + FD K + L+ G+ FG P+ +Q I + G D +G GK
Sbjct: 708 DGITGEFDGQKFEHSTRLMHGLSYSFGLKSFRPNQLQ--VINATLLGNDCFVLMPTGGGK 765
Query: 73 TGTFSIAALQNIDEKIKAPQGLILAPTRELAL-QIQKV----VMALAIHMDVKVHACIGG 127
+ + + A+ + E + ++++P + L QI K+ + A ++ + K+ +
Sbjct: 766 SLCYQLPAI--LTEGVT----IVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVM-- 817
Query: 128 TSLQEDSEALRGGAQIIVGTPGRVF------DMIDRRIFKTDNIKMFILDEADEMLSTG- 180
++ D E+ +++ TP ++ D +D + + I F++DEA + G
Sbjct: 818 -AIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT-LNSNNYISRFVIDEAHCVSQWGH 875
Query: 181 -FKEQIYNIFTM---LPPTSQVVLLSATMPGDVLEVT------------SKFMKDPVR-- 222
F+ + + P + L + P L++ S F + +R
Sbjct: 876 DFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYR 935
Query: 223 ILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLR 282
+L KK TL+ I +Y + + + + +I+C +R++ +E ++++
Sbjct: 936 VLPKKGVSTLDDISRY-IRSKPQHFS---------------GIIYCLSRKECDETSKKMC 979
Query: 283 ENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNK 342
++ + ++ L +R++ K++ +G R++ +T GID V V++Y LP +
Sbjct: 980 KDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSI 1039
Query: 343 ENY 345
E Y
Sbjct: 1040 EGY 1042
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 53.5 bits (127), Expect = 5e-07
Identities = 25/83 (30%), Positives = 49/83 (58%), Gaps = 5/83 (6%)
Query: 263 QAVIFCNTRRKVEELT--ERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDL 320
+A+IFC TR+ V E+ +++N ++ D+ Q +R+ +K FR S ++L++T++
Sbjct: 568 RAIIFCETRKNVTEMAMNPHIKQN---AQCLHGDIAQSQREITLKGFREDSFKVLVATNV 624
Query: 321 LARGIDVQQVSLVINYDLPSNKE 343
A + + +V LVI + P + E
Sbjct: 625 AAHSLHIPEVDLVIQHSPPQDVE 647
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 53.5 bits (127), Expect = 5e-07
Identities = 35/117 (29%), Positives = 60/117 (50%), Gaps = 19/117 (16%)
Query: 9 DENQIQSTYDKV---VYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQ 65
+E +++T D V + F DL L E + I G+ P+ +Q+ +I + G+D+++
Sbjct: 347 EEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSC 406
Query: 66 AQSGTGKTGTFSIAALQNI----------------DEKIKAPQGLILAPTRELALQI 106
AQ+G+GKT F + + I K + P L+L+PTREL+LQ+
Sbjct: 407 AQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 53.1 bits (126), Expect = 7e-07
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 35/253 (13%)
Query: 23 SFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQ 82
S+ L L + + + GF PS Q I I+ GKDV+ A++G+GKT + +
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 83 N-----IDEKIKAPQ---------GLILAPTRELALQIQKVVMALAIHMD----VKVHAC 124
+D ++ + LIL P L Q+ ++V L + D ++V A
Sbjct: 141 QLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGL-VDEDGNPLLRVEAV 199
Query: 125 IGGTSLQEDSEALRGGAQIIVGTPGRVFDMID----RRIFKTDNIKMFILDEADEMLSTG 180
G + IIV TP + + I+ RR+ +K + DEAD +L
Sbjct: 200 CGSQGWPDRL------PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGS 253
Query: 181 FKEQIYNIFTMLP-PTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLE--GIGQ 237
F+ QI + ML QV L+ + G +E+ + P L +D+ + I +
Sbjct: 254 FQNQIIRLINMLRFDEKQVSRLAKSNLGRPMEIDASV---PQIDLENEDDAEFDEGSISE 310
Query: 238 YYVNVEEEQYKYD 250
EEE+Y D
Sbjct: 311 EEDEEEEEEYLDD 323
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 52.8 bits (125), Expect = 9e-07
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 89 KAPQGLILAPTRELALQIQKVVMALAI---HMDVKVHACIGGTSLQEDSEALRGGAQIIV 145
K +GL A R L +IQK + LA+ + D IGG L+ ++E + I+V
Sbjct: 79 KTLKGLQEAQYR-LVTEIQKQTIGLALQGKNHDFSAGLIIGGKYLKHEAERINN-INILV 136
Query: 146 GTPGRVFDMIDRRI-FKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSAT 204
PGR+ +D + F + M +LDEA +L GF + + I LP Q +L SAT
Sbjct: 137 CAPGRLLQHMDETVSFHATALLMLVLDEAYRILDVGFADTMNAIIENLPKKRQTLLFSAT 196
Query: 205 MPGDVLEVTSKFMKD 219
V ++ +K+
Sbjct: 197 QTISVKDLARLSLKN 211
>At1g27880 [L] KOG0351 ATP-dependent DNA helicase
Length = 941
Score = 52.8 bits (125), Expect = 9e-07
Identities = 68/356 (19%), Positives = 144/356 (40%), Gaps = 67/356 (18%)
Query: 32 ELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAP 91
+LL ++GY +Q AI I+ G + +G GK+ + I A+ I
Sbjct: 259 KLLNLVYGYDSFRDGQLQ--AIKMILGGSSTMLVLPTGAGKSLCYQIPAM------ILPG 310
Query: 92 QGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALR----GGAQIIVGT 147
L+++P L + K + ++ +K +E +E LR G +++ +
Sbjct: 311 ITLVVSPLVSLMIDQLKHLPSI-----IKGGLLSSSQRPEEATETLRKLKEGIIKVLFVS 365
Query: 148 PGRVFDMIDRRIFKTD-NIKMFILDEAD--------------EMLSTGFKEQIYN----- 187
P R+ ++ +F+ ++ + ++DEA L + +N
Sbjct: 366 PERLLNVEFLSMFRMSLSVSLVVVDEAHCVSECIYCLSLFCLSWLLRAILNRSHNFRPSY 425
Query: 188 -------IFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDEL--------TL 232
+F+ L ++ ++AT L+ ++ P L++K +L +L
Sbjct: 426 MRLKASMLFSELKAEC-ILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSL 484
Query: 233 EGIGQY---YVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVS 289
G + + +E YK + +++C + + + +++ LR+NN
Sbjct: 485 SGANRMKDLLILMESPPYK-----------EIRSIIVYCKFQYETDMISKYLRDNNINAK 533
Query: 290 AIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENY 345
+S L ++R I + F S R++++T G+D V VI++ +P + E Y
Sbjct: 534 GYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEY 589
>Hs4557365 [L] KOG0351 ATP-dependent DNA helicase
Length = 1417
Score = 52.0 bits (123), Expect = 2e-06
Identities = 70/349 (20%), Positives = 135/349 (38%), Gaps = 37/349 (10%)
Query: 49 QQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELAL-QIQ 107
Q AI + G+D +G GK+ + + A + ++++P R L + Q+Q
Sbjct: 672 QLEAINAALLGEDCFILMPTGGGKSLCYQLPAC------VSPGVTVVISPLRSLIVDQVQ 725
Query: 108 KVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTP---------------GRVF 152
K+ +D+ G + DSEA Q+ P R+
Sbjct: 726 KLTS-----LDIPATYLTGDKT---DSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLI 777
Query: 153 DMIDRRIFKTDNIKMFILDEADEMLSTGFK-EQIYNIFTMLP---PTSQVVLLSATMPGD 208
++ +++ + F++DEA + G Q Y ML P+ V+ L+AT
Sbjct: 778 STLEN-LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPR 836
Query: 209 VLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFC 268
V + +K +R V + Y + + ++ +DCL + +I+C
Sbjct: 837 VQKDILTQLKI-LRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYC 895
Query: 269 NTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEF-RSGSSRILISTDLLARGIDV 327
+RR+ + + + L+ + A ++ L RD + +++ +++ +T GID
Sbjct: 896 LSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDK 955
Query: 328 QQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMREL 376
V VI+ LP + E Y F T D+ ++ L
Sbjct: 956 PDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRL 1004
>Hs20482355 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 99
Score = 51.2 bits (121), Expect = 3e-06
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 320 LLARGIDVQQVSLVINYDLPSNKENYXXXXXXXXXXXXXXXXXNFVTNKDIGAMRELERF 379
LL DVQQVSLVINYDL +N EN NFVT +D + ++E F
Sbjct: 31 LLTLITDVQQVSLVINYDLTTNNEN-------CIHRIGRGVAINFVTEEDKIILHDIETF 83
Query: 380 YSTQIEELPSSIS 392
Y+ +EE+P +++
Sbjct: 84 YNNTVEEMPMNVT 96
>Hs5739524_2 [L] KOG0351 ATP-dependent DNA helicase
Length = 900
Score = 50.8 bits (120), Expect = 3e-06
Identities = 70/330 (21%), Positives = 144/330 (43%), Gaps = 39/330 (11%)
Query: 34 LRGIFGYGFVEPSAIQQRAILPIIEGK-DVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQ 92
L+ FG+ +P +Q + I ++E + D +A +G GK+ F +
Sbjct: 8 LKMYFGHSSFKP--VQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVY------VGKI 59
Query: 93 GLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQED--SEALRGGAQIIVGTPGR 150
GL+++P L ++ V+ L + + AC G++ E+ ++ G +I+ TP
Sbjct: 60 GLVISPLISL---MEDQVLQLKMS---NIPACFLGSAQSENVLTDIKLGKYRIVYVTPEY 113
Query: 151 VFDMID--RRIFKTDNIKMFILDEADEMLSTG--FKEQIYNIFTMLP--PTSQVVLLSAT 204
+ +++ I + +DEA + G F++ + ++ P +V L+AT
Sbjct: 114 CSGNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTAT 173
Query: 205 MPGDVLEVTSKFMKDPVRIL-VKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQ 263
+S +D VR L ++ ++T G + + +E + + L DL + T
Sbjct: 174 -------ASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTS 226
Query: 264 A--------VIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRIL 315
+ +I+C +R+ +++T LR+ N + ++ + R I F + +
Sbjct: 227 SHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCV 286
Query: 316 ISTDLLARGIDVQQVSLVINYDLPSNKENY 345
I+T GI+ + VI+Y P + E+Y
Sbjct: 287 IATIAFGMGINKADIRQVIHYGAPKDMESY 316
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.137 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,059,044
Number of Sequences: 60738
Number of extensions: 837241
Number of successful extensions: 3321
Number of sequences better than 1.0e-05: 246
Number of HSP's better than 0.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2479
Number of HSP's gapped (non-prelim): 304
length of query: 396
length of database: 30,389,216
effective HSP length: 108
effective length of query: 288
effective length of database: 23,829,512
effective search space: 6862899456
effective search space used: 6862899456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)