ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1684.1 good J KOG3353 Translation, ribosomal structure and biogenesis 60S ribosomal protein L22
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1684.1 577629 577847 73
(73 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL177w [J] KOG3353 60S ribosomal protein L22 95 2e-20
YKL180w [J] KOG3353 60S ribosomal protein L22 94 3e-20
At1g67430 [J] KOG3353 60S ribosomal protein L22 60 4e-10
At1g27400 [J] KOG3353 60S ribosomal protein L22 60 4e-10
Hs4506617 [J] KOG3353 60S ribosomal protein L22 58 2e-09
SPCC364.03 [J] KOG3353 60S ribosomal protein L22 58 3e-09
SPBC2F12.04 [J] KOG3353 60S ribosomal protein L22 58 3e-09
Hs22055447 [J] KOG3353 60S ribosomal protein L22 56 8e-09
Hs13653804 [J] KOG3353 60S ribosomal protein L22 56 8e-09
Hs18576847 [J] KOG3353 60S ribosomal protein L22 55 2e-08
Hs13645542 [J] KOG3353 60S ribosomal protein L22 55 2e-08
Hs22045629 [J] KOG3353 60S ribosomal protein L22 53 9e-08
7290748 [J] KOG3353 60S ribosomal protein L22 51 3e-07
CE22195 [J] KOG3353 60S ribosomal protein L22 50 6e-07
Hs17452148 [J] KOG3353 60S ribosomal protein L22 49 2e-06
ECU07g1410 [J] KOG3353 60S ribosomal protein L22 48 3e-06
Hs20470456 [J] KOG3353 60S ribosomal protein L22 47 5e-06
Hs22048743 [J] KOG3353 60S ribosomal protein L22 47 6e-06
Hs17449313 [J] KOG3353 60S ribosomal protein L22 45 2e-05
Hs18559477 [J] KOG3353 60S ribosomal protein L22 43 7e-05
Hs17453140_2 [J] KOG3353 60S ribosomal protein L22 43 7e-05
Hs20556333 [J] KOG3353 60S ribosomal protein L22 42 1e-04
Hs22063048 [J] KOG3353 60S ribosomal protein L22 42 2e-04
Hs22049833 [J] KOG3353 60S ribosomal protein L22 33 0.054
Hs17462105 [J] KOG3353 60S ribosomal protein L22 30 0.60
At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 27 6.6
Hs17436951 [J] KOG3353 60S ribosomal protein L22 26 8.7
>YJL177w [J] KOG3353 60S ribosomal protein L22
Length = 184
Score = 94.7 bits (234), Expect = 2e-20
Identities = 47/73 (64%), Positives = 52/73 (70%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHIXXXXXXXXXXXXXXXXXXXXRLSSR 60
+YVSHIQVNQAPKQRRRT+RAHGRINKYESSPSHI RL+SR
Sbjct: 112 LYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSR 171
Query: 61 QRGRLATQKRITA 73
QRGR+A QKRI+A
Sbjct: 172 QRGRIAAQKRISA 184
>YKL180w [J] KOG3353 60S ribosomal protein L22
Length = 184
Score = 94.4 bits (233), Expect = 3e-20
Identities = 47/73 (64%), Positives = 51/73 (69%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHIXXXXXXXXXXXXXXXXXXXXRLSSR 60
+YVSHIQVNQAPKQRRRT+RAHGRINKYESSPSHI RL+SR
Sbjct: 112 LYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSR 171
Query: 61 QRGRLATQKRITA 73
QRGR+A QKRI A
Sbjct: 172 QRGRIAAQKRIAA 184
>At1g67430 [J] KOG3353 60S ribosomal protein L22
Length = 175
Score = 60.5 bits (145), Expect = 4e-10
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+++SHIQVNQA KQRRRT+RAHGRIN Y S+P HI
Sbjct: 113 LFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147
>At1g27400 [J] KOG3353 60S ribosomal protein L22
Length = 176
Score = 60.5 bits (145), Expect = 4e-10
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+++SHIQVNQA KQRRRT+RAHGRIN Y S+P HI
Sbjct: 113 LFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147
>Hs4506617 [J] KOG3353 60S ribosomal protein L22
Length = 184
Score = 58.2 bits (139), Expect = 2e-09
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HIQVN+APK RRRT+RAHGRIN Y SSP HI
Sbjct: 112 LVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHI 146
>SPCC364.03 [J] KOG3353 60S ribosomal protein L22
Length = 187
Score = 57.8 bits (138), Expect = 3e-09
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + H+QVN APKQRRRT+RAHGR+ Y SSPSHI
Sbjct: 112 LIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHI 146
>SPBC2F12.04 [J] KOG3353 60S ribosomal protein L22
Length = 187
Score = 57.8 bits (138), Expect = 3e-09
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + H+QVN APKQRRRT+RAHGR+ Y SSPSHI
Sbjct: 112 LIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHI 146
>Hs22055447 [J] KOG3353 60S ribosomal protein L22
Length = 91
Score = 56.2 bits (134), Expect = 8e-09
Identities = 24/35 (68%), Positives = 28/35 (79%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HIQVN+APK RRT+RAHGRIN Y SSP HI
Sbjct: 19 LVIEHIQVNKAPKMHRRTYRAHGRINPYMSSPCHI 53
>Hs13653804 [J] KOG3353 60S ribosomal protein L22
Length = 184
Score = 56.2 bits (134), Expect = 8e-09
Identities = 24/35 (68%), Positives = 28/35 (79%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HIQVN+APK RRT+RAHGRIN Y SSP HI
Sbjct: 112 LVIEHIQVNKAPKMHRRTYRAHGRINPYMSSPCHI 146
>Hs18576847 [J] KOG3353 60S ribosomal protein L22
Length = 114
Score = 55.1 bits (131), Expect = 2e-08
Identities = 24/35 (68%), Positives = 27/35 (76%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HIQVN+ PK RRRT RAHGRIN Y SSP HI
Sbjct: 42 LVIEHIQVNKTPKMRRRTHRAHGRINPYMSSPCHI 76
>Hs13645542 [J] KOG3353 60S ribosomal protein L22
Length = 144
Score = 55.1 bits (131), Expect = 2e-08
Identities = 24/35 (68%), Positives = 28/35 (79%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HIQVN+APK RRRT+RAHGRIN Y SSP I
Sbjct: 98 LVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCRI 132
>Hs22045629 [J] KOG3353 60S ribosomal protein L22
Length = 114
Score = 52.8 bits (125), Expect = 9e-08
Identities = 23/35 (65%), Positives = 28/35 (79%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + +IQVN+APK RRT+RAHGRIN Y SSP HI
Sbjct: 42 LVIEYIQVNKAPKMLRRTYRAHGRINSYMSSPWHI 76
>7290748 [J] KOG3353 60S ribosomal protein L22
Length = 186
Score = 50.8 bits (120), Expect = 3e-07
Identities = 23/35 (65%), Positives = 27/35 (76%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ V HIQVN+A RRRT+RAHGRIN Y SSP H+
Sbjct: 112 LVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHV 146
>CE22195 [J] KOG3353 60S ribosomal protein L22
Length = 187
Score = 50.1 bits (118), Expect = 6e-07
Identities = 22/35 (62%), Positives = 26/35 (73%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HI V +A K RRRT+RAHGRIN Y SSP HI
Sbjct: 114 LVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHI 148
>Hs17452148 [J] KOG3353 60S ribosomal protein L22
Length = 159
Score = 48.5 bits (114), Expect = 2e-06
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 3 VSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ H +VN+APK RRT+RAHG N Y SPSHI
Sbjct: 96 IEHFEVNKAPKMHRRTYRAHGWTNPYVGSPSHI 128
>ECU07g1410 [J] KOG3353 60S ribosomal protein L22
Length = 183
Score = 47.8 bits (112), Expect = 3e-06
Identities = 19/35 (54%), Positives = 27/35 (76%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ ++H+QV++APK RTFRAHGR+N + SP HI
Sbjct: 133 LVITHVQVSKAPKIFGRTFRAHGRVNPFNKSPCHI 167
>Hs20470456 [J] KOG3353 60S ribosomal protein L22
Length = 181
Score = 47.0 bits (110), Expect = 5e-06
Identities = 22/30 (73%), Positives = 24/30 (79%)
Query: 6 IQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
IQVN+A K R RT+RAHGRIN Y SSP HI
Sbjct: 114 IQVNKASKMRCRTYRAHGRINLYMSSPCHI 143
>Hs22048743 [J] KOG3353 60S ribosomal protein L22
Length = 91
Score = 46.6 bits (109), Expect = 6e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + H+QVN+AP +RT+RAHGRIN + SP HI
Sbjct: 19 LVIEHLQVNKAPTMCQRTYRAHGRINSHVISPCHI 53
>Hs17449313 [J] KOG3353 60S ribosomal protein L22
Length = 112
Score = 44.7 bits (104), Expect = 2e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HIQVN+APK RRR RA+GRI SSP HI
Sbjct: 43 LVIEHIQVNKAPKMRRRIDRAYGRIYPCMSSPCHI 77
>Hs18559477 [J] KOG3353 60S ribosomal protein L22
Length = 157
Score = 43.1 bits (100), Expect = 7e-05
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSH 34
+ + HI N+APK T+RAHGRIN Y SSP H
Sbjct: 85 LVIEHIHGNKAPKMCPWTYRAHGRINPYMSSPCH 118
>Hs17453140_2 [J] KOG3353 60S ribosomal protein L22
Length = 101
Score = 43.1 bits (100), Expect = 7e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + H+QVN+APK +T RAHG IN Y SSP I
Sbjct: 28 LVIEHLQVNKAPKMCHQTSRAHGGINPYMSSPCRI 62
>Hs20556333 [J] KOG3353 60S ribosomal protein L22
Length = 147
Score = 42.4 bits (98), Expect = 1e-04
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSHI 35
+ + HIQ+N+APK T+RAHG IN Y SS HI
Sbjct: 94 LVIEHIQINKAPKTHCWTYRAHGWINPYMSSLCHI 128
>Hs22063048 [J] KOG3353 60S ribosomal protein L22
Length = 154
Score = 41.6 bits (96), Expect = 2e-04
Identities = 19/34 (55%), Positives = 24/34 (69%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSPSH 34
+ + HIQVN+APK+ T+RAHG IN SSP H
Sbjct: 78 LVIEHIQVNKAPKKGCWTYRAHGWINPCMSSPCH 111
>Hs22049833 [J] KOG3353 60S ribosomal protein L22
Length = 146
Score = 33.5 bits (75), Expect = 0.054
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHG 23
+ + H QVN+APK RT+RAHG
Sbjct: 20 LLIKHSQVNKAPKMCHRTYRAHG 42
>Hs17462105 [J] KOG3353 60S ribosomal protein L22
Length = 231
Score = 30.0 bits (66), Expect = 0.60
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 3 VSHIQVNQAPKQRRRTFRAHG 23
+ HIQVN+APK +T +AHG
Sbjct: 21 IEHIQVNKAPKMPCQTCKAHG 41
>At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 521
Score = 26.6 bits (57), Expect = 6.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAHGRINKYESSP 32
+YV +I N + +Q + F+ HG + K + P
Sbjct: 320 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPP 351
>Hs17436951 [J] KOG3353 60S ribosomal protein L22
Length = 390
Score = 26.2 bits (56), Expect = 8.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 1 MYVSHIQVNQAPKQRRRTFRAH 22
+ + I+VN+APK RT RAH
Sbjct: 93 LVIEQIRVNKAPKMCYRTCRAH 114
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.129 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,662,387
Number of Sequences: 60738
Number of extensions: 50060
Number of successful extensions: 87
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 27
length of query: 73
length of database: 30,389,216
effective HSP length: 49
effective length of query: 24
effective length of database: 27,413,054
effective search space: 657913296
effective search space used: 657913296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)