ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1800 good J KOG0901 Translation, ribosomal structure and biogenesis 60S ribosomal protein L14/L17/L23
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1800 614979 615392 138
(138 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL170w [J] KOG0901 60S ribosomal protein L14/L17/L23 222 1e-58
SPBC887.07 [J] KOG0901 60S ribosomal protein L14/L17/L23 114 5e-26
AtCh058 [J] KOG0901 60S ribosomal protein L14/L17/L23 82 3e-16
At5g46160 [J] KOG0901 60S ribosomal protein L14/L17/L23 81 4e-16
At1g17560 [J] KOG0901 60S ribosomal protein L14/L17/L23 63 1e-10
ECU08g1160i [J] KOG0901 60S ribosomal protein L14/L17/L23 55 4e-08
>YKL170w [J] KOG0901 60S ribosomal protein L14/L17/L23
Length = 138
Score = 222 bits (565), Expect = 1e-58
Identities = 105/138 (76%), Positives = 122/138 (88%)
Query: 1 MIYLKSFLKVIDNSGAQIAECIKVLGKGSPKSPGRIGDKIVCVVKKAKPLTQTITGQSNN 60
MI+LKS +KVIDNSGAQ+AECIKV+ KGSPKSP +GD+IVCV++KAKPLTQ ITG +N
Sbjct: 1 MIFLKSVIKVIDNSGAQLAECIKVIRKGSPKSPAMVGDRIVCVIQKAKPLTQNITGTANT 60
Query: 61 NRVKKGDIVHAVVVRTKQRNMIRPDGSTIAFGDNACVLINKNNGEPLGSRIMGNDGVVGR 120
NRVKKGDI HA+VVR+KQRNM R DGST+AFGD ACVLINKN GEPLG+RIM NDG V R
Sbjct: 61 NRVKKGDICHAIVVRSKQRNMCRKDGSTVAFGDTACVLINKNTGEPLGTRIMANDGCVDR 120
Query: 121 ELREKGYNKICSLASKVL 138
L++KGYNKICSLAS+V+
Sbjct: 121 TLKDKGYNKICSLASRVI 138
>SPBC887.07 [J] KOG0901 60S ribosomal protein L14/L17/L23
Length = 126
Score = 114 bits (284), Expect = 5e-26
Identities = 70/138 (50%), Positives = 90/138 (64%), Gaps = 12/138 (8%)
Query: 1 MIYLKSFLKVIDNSGAQIAECIKVLGKGSPKSPGRIGDKIVCVVKKAKPLTQTITGQSNN 60
MI LK LKVIDNSGA +AECI+V+ G S +GD++V VVKKA+ +
Sbjct: 1 MIGLKGILKVIDNSGATLAECIRVVRAGKFAS---LGDEVVVVVKKARSGSSVTAA---- 53
Query: 61 NRVKKGDIVHAVVVRTKQRNMIRPDGSTIAFGDNACVLINKNNGEPLGSRIMGNDGVVGR 120
N+VK+GDI HA++VRTK + RPDG + F DNACVL+NK EPLG+RI+ VV
Sbjct: 54 NKVKRGDIHHAIIVRTKS-PVRRPDGRYVRFDDNACVLVNK-ECEPLGTRIL---SVVAN 108
Query: 121 ELREKGYNKICSLASKVL 138
ELR K + KI SLA + +
Sbjct: 109 ELRTKHHTKIASLAPRTI 126
>AtCh058 [J] KOG0901 60S ribosomal protein L14/L17/L23
Length = 122
Score = 81.6 bits (200), Expect = 3e-16
Identities = 52/138 (37%), Positives = 83/138 (59%), Gaps = 16/138 (11%)
Query: 1 MIYLKSFLKVIDNSGAQIAECIKVLGKGSPKSPGRIGDKIVCVVKKAKPLTQTITGQSNN 60
MI +++L V DNSGA+ CI+++G S + IGD IV V+K+A P N
Sbjct: 1 MIQPQTYLNVADNSGARELMCIRIIG-ASNRRYAHIGDVIVAVIKEAIP----------N 49
Query: 61 NRVKKGDIVHAVVVRTKQRNMIRPDGSTIAFGDNACVLINKNNGEPLGSRIMGNDGVVGR 120
+++ +++ AV+VRT + + R +G+ I + DNA V+I++ G P G+R+ G + R
Sbjct: 50 TPLERSEVIRAVIVRT-CKELKRNNGTIIRYDDNAAVVIDQ-EGNPKGTRVF---GAIPR 104
Query: 121 ELREKGYNKICSLASKVL 138
ELR+ + KI SLA +VL
Sbjct: 105 ELRQLNFTKIVSLAPEVL 122
>At5g46160 [J] KOG0901 60S ribosomal protein L14/L17/L23
Length = 124
Score = 81.3 bits (199), Expect = 4e-16
Identities = 58/136 (42%), Positives = 78/136 (56%), Gaps = 23/136 (16%)
Query: 8 LKVIDNSGAQIAECIKVLGKGSPKSPGRIGDKIVCVVKKAKPLTQTITGQSNNNRVKKGD 67
LKV+DNSGA+ CI+ L KG K R+GD IV VK+A P N +VKKG
Sbjct: 5 LKVVDNSGAKKVMCIQAL-KG--KKGARLGDTIVASVKEAMP----------NGKVKKGA 51
Query: 68 IVHAVVVRTKQRNMIRPDGSTIAFGDNACVLIN------KNNGEPLGSRIMGNDGVVGRE 121
+V+ VVVR + R DGS + F DNA VL++ K + +P+G+R+ G V E
Sbjct: 52 VVYGVVVRAAMQRG-RVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVF---GPVPHE 107
Query: 122 LREKGYNKICSLASKV 137
LR+K + KI +LA V
Sbjct: 108 LRKKKHLKILALAQHV 123
>At1g17560 [J] KOG0901 60S ribosomal protein L14/L17/L23
Length = 196
Score = 63.2 bits (152), Expect = 1e-10
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 25/155 (16%)
Query: 2 IYLKSFLKVIDNSGAQIAECIKVLGKGSPKSPGRIGDKIVCVVKKAKPLTQTITGQS--N 59
I + + LK +DNS A+ CI+ L K R+GD IV VK+A P+ Q +
Sbjct: 49 IQMGTILKCVDNSCAKEVMCIQSL---RGKKGARLGDIIVGSVKEANPIVQKKVKKDAIP 105
Query: 60 NNRVKKGDIVHAVVVRTKQRNMIRPDGSTIAFGDNACVLI--------NKNNG------- 104
+VKKG +V+ VVVR R DGS + F DNA V++ N ++G
Sbjct: 106 KGKVKKGMVVYGVVVRAAMPKG-RADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEY 164
Query: 105 -EPLGSRIMGNDGVVGRELREKGYNKICSLASKVL 138
+P G+R+ G V E+R + KI SLA ++
Sbjct: 165 NQPTGTRVF---GPVPHEMRLRKQLKILSLAQHIV 196
>ECU08g1160i [J] KOG0901 60S ribosomal protein L14/L17/L23
Length = 146
Score = 54.7 bits (130), Expect = 4e-08
Identities = 51/139 (36%), Positives = 70/139 (49%), Gaps = 22/139 (15%)
Query: 2 IYLKSFLKVIDNSGAQIAECIKVL---GKGSPKSPGRIGDKIVCVVKKAKPLTQTITGQS 58
I +++ +K DNSGA+I CI V G+ + GD V VKK KP +
Sbjct: 26 IQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELR------ 79
Query: 59 NNNRVKKGDIVHAVVVRTKQRNMIRPDGSTIAFGDNACVLINKNNGEPLGSRIMGNDGVV 118
KK VH ++ +++ R DGS I F DNA VLIN N GE G++I G V
Sbjct: 80 -----KK---VHYAILIRQKKIWRRTDGSHIMFEDNAAVLIN-NKGELRGAQIA---GPV 127
Query: 119 GRELREKGYNKICSLASKV 137
RE+ + + KI S AS +
Sbjct: 128 PREVADM-WPKISSQASSI 145
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,723,680
Number of Sequences: 60738
Number of extensions: 370649
Number of successful extensions: 854
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 6
length of query: 138
length of database: 30,389,216
effective HSP length: 95
effective length of query: 43
effective length of database: 24,619,106
effective search space: 1058621558
effective search space used: 1058621558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)