ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1842 good B KOG1973 Chromatin structure and dynamics Chromatin remodeling protein, contains PHD Zn-finger
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1842 631459 630575 -295
(295 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR090c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 215 5e-56
SPAC3G9.08 [B] KOG1973 Chromatin remodeling protein contains PHD... 118 9e-27
SPBC1709.11c [B] KOG1973 Chromatin remodeling protein contains P... 89 6e-18
YOR064c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 87 2e-17
7293493 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 87 2e-17
Hs9506659 [B] KOG1973 Chromatin remodeling protein contains PHD ... 86 8e-17
Hs4504695 [B] KOG1973 Chromatin remodeling protein contains PHD ... 84 2e-16
At3g24010 [B] KOG1973 Chromatin remodeling protein contains PHD ... 84 2e-16
Hs19923771 [B] KOG1973 Chromatin remodeling protein contains PHD... 83 4e-16
Hs18644730 [B] KOG1973 Chromatin remodeling protein contains PHD... 83 4e-16
7298057 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 83 4e-16
Hs7705861 [B] KOG1973 Chromatin remodeling protein contains PHD ... 83 5e-16
Hs22061442 [B] KOG1973 Chromatin remodeling protein contains PHD... 83 5e-16
CE20286 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 81 2e-15
YNL097c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 80 5e-15
7300308 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 79 1e-14
ECU10g1090 [B] KOG1973 Chromatin remodeling protein contains PHD... 72 7e-13
CE19561 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 64 2e-10
At1g54390 [B] KOG1973 Chromatin remodeling protein contains PHD ... 60 4e-09
CE29113 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 55 9e-08
YPL138c [R] KOG1632 Uncharacterized PHD Zn-finger protein 50 5e-06
>YHR090c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 282
Score = 215 bits (548), Expect = 5e-56
Identities = 105/274 (38%), Positives = 152/274 (55%), Gaps = 3/274 (1%)
Query: 10 DPSSALEQATQDVANLKSEFHHIMDEMQVADKTLVSSREQYLREDYVLHKLVKQHGSLTK 69
DPS LEQ QDV+NL SEF ++++E+ D L+ +++Y +++ +HK ++Q GS+ K
Sbjct: 2 DPSLVLEQTIQDVSNLPSEFRYLLEEIGSNDLKLIEEKKKYEQKESQIHKFIRQQGSIPK 61
Query: 70 DPKEGSITETVEKEMKRCGDLQQQKCILANTALYLVTKHLSKIKANIESLEEDGLLAPLD 129
P+E + + +++ + +C LQ++KC+LANTAL+L+ +HL+K++ NI LEEDG+LAP++
Sbjct: 62 HPQEDGLDKEIKESLLKCQSLQREKCVLANTALFLIARHLNKLEKNIALLEEDGVLAPVE 121
Query: 130 DELSDKKAGSVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKGXXXXXXXXXXXXXX 189
++ A
Sbjct: 122 EDGDMDSAAEASRESSVVSNSSVKKRRAASSSGSVPPTLKKKKTSRTSKLQNEIDVSSRE 181
Query: 190 XXAGTVSRDVSPNAGIGRDPTFDALAYNDDLFKMNQGGEEDDKQLYCFCQRVSYGEMVAC 249
VS + I R F + N + EE+DK LYCFCQRVS+GEMVAC
Sbjct: 182 KSVTPVSPSIEKK--IARTKEFKN-SRNGKGQNGSPENEEEDKTLYCFCQRVSFGEMVAC 238
Query: 250 DGPNCKYEWFHYSCVNLTEPPKGQWYCPECRLEI 283
DGPNCKYEWFHY CVNL EPPKG WYCPEC++E+
Sbjct: 239 DGPNCKYEWFHYDCVNLKEPPKGTWYCPECKIEM 272
>SPAC3G9.08 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 283
Score = 118 bits (296), Expect = 9e-27
Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 7/275 (2%)
Query: 10 DPSSALEQATQDVANLKSEFHHIMDEMQVADKTLVSSREQYLREDYVLHKLVKQHGSLTK 69
D + L + Q + N+ +E HI DE+ V + + ++ D + +K HGSLT
Sbjct: 4 DTAYILSEYLQTLDNVPNETKHIFDEISVKEVAVHDIWKRIQAADSQIQSYIKSHGSLTP 63
Query: 70 DPKEGSITETVEKEMKRCGDLQQQKCILANTALYLVTKHLSKIKANIESLEEDGLLAPL- 128
PKE ++ T+ +E ++ ++Q +K LA+ A +T+H+ ++ + A L
Sbjct: 64 HPKEDALYSTIREEYQKAINIQNEKVQLADRARLGLTRHIKRLDDRLAKAGHGFTAAELL 123
Query: 129 --DDELSDKKAGSVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKGXXXXXXXXXXX 186
D + G G
Sbjct: 124 NAPDYYASSPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTA 183
Query: 187 XXXXXAGTVSRDVS-PNAGIGRDPTFDALAYNDDLFKMNQGGEEDDKQLYCFCQRVSYGE 245
T + VS A + D+ N+ +++ E+D + YCFCQ+ SYG+
Sbjct: 184 SLADSGSTRGQKVSNATATTQLETKADSTTPNE---MVSEEDMEEDNEKYCFCQQGSYGQ 240
Query: 246 MVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECR 280
MVACD NC+ EWFH CV L PP+G WYC CR
Sbjct: 241 MVACDNANCEREWFHMECVGLKAPPEGTWYCEACR 275
>SPBC1709.11c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 305
Score = 89.4 bits (220), Expect = 6e-18
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 230 DDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPEC 279
+ +QLYC+CQ+VSYG+M+ CD NCK EWFH CV L EPPKG WYC EC
Sbjct: 245 EGEQLYCYCQQVSYGQMIGCDNENCKREWFHLPCVGLVEPPKGIWYCKEC 294
>YOR064c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 219
Score = 87.4 bits (215), Expect = 2e-17
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 223 MNQG----GEEDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPE 278
+NQG G + +++YCFC+ VSYG MVACD P C +EWFHY CV L + PKG+WYC +
Sbjct: 141 INQGDVTEGNNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSK 200
Query: 279 CRLEIA 284
EIA
Sbjct: 201 DCKEIA 206
>7293493 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 686
Score = 87.4 bits (215), Expect = 2e-17
Identities = 31/45 (68%), Positives = 37/45 (81%)
Query: 235 YCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPEC 279
YC C +VSYG+MVACD C YEWFHY CV +T+PPKG+WYCP+C
Sbjct: 630 YCTCNQVSYGDMVACDNDACPYEWFHYPCVGITQPPKGKWYCPKC 674
>Hs9506659 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 418
Score = 85.5 bits (210), Expect = 8e-17
Identities = 31/45 (68%), Positives = 35/45 (76%)
Query: 235 YCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPEC 279
YC C +VSYGEMV CD +C EWFHY CV LTE PKG+WYCP+C
Sbjct: 362 YCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQC 406
>Hs4504695 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 280
Score = 84.3 bits (207), Expect = 2e-16
Identities = 30/52 (57%), Positives = 39/52 (74%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECR 280
+ ++ YC C +VSYGEM+ CD C EWFH+SCV+LT PKG+WYCP+CR
Sbjct: 208 DPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCR 259
>At3g24010 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 221
Score = 84.0 bits (206), Expect = 2e-16
Identities = 31/51 (60%), Positives = 38/51 (73%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPEC 279
+ ++ YC C +VS+GEMVACD CK EWFH+ CV L E PKG+WYCPEC
Sbjct: 161 DPNEPTYCICNQVSFGEMVACDNNACKIEWFHFGCVGLKEQPKGKWYCPEC 211
>Hs19923771 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 422
Score = 83.2 bits (204), Expect = 4e-16
Identities = 30/54 (55%), Positives = 38/54 (69%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECRLE 282
+ ++ YC C +VSYGEM+ CD C EWFH+SCV L PKG+WYCP+CR E
Sbjct: 349 DPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGE 402
>Hs18644730 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 240
Score = 83.2 bits (204), Expect = 4e-16
Identities = 28/51 (54%), Positives = 39/51 (75%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPEC 279
+ ++ YC C +VSYGEM+ CD P+C EWFH++CV+LT PKG+W+CP C
Sbjct: 182 DPNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRC 232
>7298057 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 328
Score = 83.2 bits (204), Expect = 4e-16
Identities = 28/51 (54%), Positives = 39/51 (75%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPEC 279
+ ++ YC C +VSYGEM+ CD P+C EWFH++CV LT PKG+W+CP+C
Sbjct: 271 DPNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVGLTTKPKGKWFCPKC 321
>Hs7705861 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 249
Score = 82.8 bits (203), Expect = 5e-16
Identities = 28/54 (51%), Positives = 39/54 (71%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECRLE 282
+ ++ YC C +VSYGEM+ CD P+C EWFH++CV LT P+G+W+CP C E
Sbjct: 192 DPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 245
>Hs22061442 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 248
Score = 82.8 bits (203), Expect = 5e-16
Identities = 28/54 (51%), Positives = 39/54 (71%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECRLE 282
+ ++ YC C +VSYGEM+ CD P+C EWFH++CV LT P+G+W+CP C E
Sbjct: 191 DPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 244
>CE20286 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 490
Score = 81.3 bits (199), Expect = 2e-15
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 228 EEDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECRL 281
+E+D+ +CFC SYG+MV CD +C WFHY C+ + EPP G+WYCP C +
Sbjct: 423 DEEDEMHWCFCNEKSYGDMVQCDNRHCTLRWFHYPCIGMVEPPTGKWYCPRCEV 476
>YNL097c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 330
Score = 79.7 bits (195), Expect = 5e-15
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query: 222 KMNQGGEEDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECRL 281
K N GE LYC+C +V+YGEMV CDG +C+ EWFH C+ L PKG+WYC +C+
Sbjct: 273 KTNDYGEP----LYCYCNQVAYGEMVGCDGADCELEWFHLPCIGLETLPKGKWYCDDCKK 328
Query: 282 EI 283
++
Sbjct: 329 KL 330
>7300308 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 433
Score = 78.6 bits (192), Expect = 1e-14
Identities = 28/54 (51%), Positives = 38/54 (69%)
Query: 229 EDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECRLE 282
+ D+ YC C ++S+GEM+ CD C EWFH+SCV+L PKG+W+CP CR E
Sbjct: 354 DPDEPTYCVCNQISFGEMILCDNDLCPIEWFHFSCVSLVLKPKGKWFCPNCRGE 407
>ECU10g1090 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 183
Score = 72.4 bits (176), Expect = 7e-13
Identities = 28/55 (50%), Positives = 37/55 (66%), Gaps = 3/55 (5%)
Query: 226 GGEEDDKQLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPECR 280
GG E +LYC C R ++ M+ACD +CK EWFH+ CV ++ PPK W CPEC+
Sbjct: 125 GGSE---RLYCKCNRPAFKSMIACDSLDCKREWFHFECVGISGPPKMSWTCPECK 176
>CE19561 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 247
Score = 64.3 bits (155), Expect = 2e-10
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 233 QLYCFCQRVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCP-ECRLE 282
++YC+CQ M+ C+ P CKY WFH++C+ + P G WYC ECR +
Sbjct: 175 KMYCWCQLDKNDTMIECENPGCKYGWFHFTCIGMITAPAGDWYCTNECRAQ 225
>At1g54390 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 270
Score = 60.1 bits (144), Expect = 4e-09
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 219 DLFKMNQGGEEDDKQLYCFCQRVSYGEMVACDGPNCK-YEWFHYSCVNLTEPP--KGQW 274
DL + + + ++ YC C +VS+G+M+ACD NC+ EWFHY+CV LT KG+W
Sbjct: 178 DLMPIEEQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYTCVGLTPETRFKGKW 236
>CE29113 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 485
Score = 55.5 bits (132), Expect = 9e-08
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 231 DKQLYCFCQ--RVSYGEMVACDGPNCKYEWFHYSCVNLTEPPKGQWYCPEC 279
+++ +C C ++ G MV C+ NC +WFH+ CV L P +WYC +C
Sbjct: 431 EQEEWCICNGMNINSGMMVECENKNCPIKWFHFECVGLLAAPLDEWYCTDC 481
>YPL138c [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 353
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 232 KQLYCFCQRVSYGE-MVACDGPNCKYEWFHYSCVNLTEPPKG---QWYCPECRLEI 283
+ +YC C+R YGE MV CDG + +WFH++C+++ E K +YCP C+ I
Sbjct: 21 EDVYCICKRPDYGELMVGCDGCD---DWFHFTCLHIPEQFKDLVFSFYCPYCQAGI 73
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,407,745
Number of Sequences: 60738
Number of extensions: 590257
Number of successful extensions: 1472
Number of sequences better than 1.0e-05: 21
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 25
length of query: 295
length of database: 30,389,216
effective HSP length: 106
effective length of query: 189
effective length of database: 23,950,988
effective search space: 4526736732
effective search space used: 4526736732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)