ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1890.1 good J KOG3411 Translation, ribosomal structure and biogenesis 40S ribosomal protein S19
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1890.1 646944 646576 -123
(123 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL121c [J] KOG3411 40S ribosomal protein S19 226 3e-60
YNL302c [J] KOG3411 40S ribosomal protein S19 226 3e-60
SPBC649.02 [J] KOG3411 40S ribosomal protein S19 156 5e-39
SPBC21C3.13 [J] KOG3411 40S ribosomal protein S19 152 5e-38
At3g02080 [J] KOG3411 40S ribosomal protein S19 117 2e-27
At5g15520 [J] KOG3411 40S ribosomal protein S19 117 3e-27
Hs4506695 [J] KOG3411 40S ribosomal protein S19 114 2e-26
At5g61170 [J] KOG3411 40S ribosomal protein S19 113 5e-26
7293252 [J] KOG3411 40S ribosomal protein S19 111 2e-25
7301072 [J] KOG3411 40S ribosomal protein S19 105 1e-23
CE13265 [J] KOG3411 40S ribosomal protein S19 102 6e-23
ECU11g1620i [J] KOG3411 40S ribosomal protein S19 64 3e-11
Hs22050228 [J] KOG3411 40S ribosomal protein S19 38 0.003
CE29398 [T] KOG0689 Guanine nucleotide exchange factor for Rho a... 33 0.048
CE19467 [T] KOG0689 Guanine nucleotide exchange factor for Rho a... 33 0.048
CE19466 [T] KOG0689 Guanine nucleotide exchange factor for Rho a... 33 0.048
CE19464 [T] KOG4240 Multidomain protein contains SPEC repeats PH... 33 0.048
Hs13540576 [S] KOG3683 Uncharacterized conserved protein 30 0.53
ECU11g0610 [A] KOG1896 mRNA cleavage and polyadenylation factor ... 29 1.2
7295715 [G] KOG1050 Trehalose-6-phosphate synthase component TPS... 29 1.2
Hs4506195 [O] KOG0177 20S proteasome regulatory subunit beta typ... 27 3.5
At5g61470 [R] KOG1721 FOG: Zn-finger 27 4.5
7290390 [T] KOG1217 Fibrillins and related proteins containing C... 27 4.5
7298458 [E] KOG1288 Amino acid transporters 27 5.9
SPBC1A4.03c [B] KOG0355 DNA topoisomerase type II 26 7.7
At5g49110 [S] KOG4553 Uncharacterized conserved protein 26 7.7
7291597 [Q] KOG0061 Transporter ABC superfamily (Breast cancer r... 26 7.7
>YOL121c [J] KOG3411 40S ribosomal protein S19
Length = 144
Score = 226 bits (577), Expect = 3e-60
Identities = 107/123 (86%), Positives = 121/123 (97%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
+QRQGKLEVPGYVDIVKTS+GNE+PPQD+EGWFYKRAASVARHIY+RKQVGVGKLNKLYG
Sbjct: 22 LQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYG 81
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIAAATLE 120
GAK+RGVRP+KH+DASGSINRKVLQ+LEK+G+VEISPKGGRRIS+NG RDLDRIAA TLE
Sbjct: 82 GAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLE 141
Query: 121 DEE 123
++E
Sbjct: 142 EDE 144
>YNL302c [J] KOG3411 40S ribosomal protein S19
Length = 144
Score = 226 bits (577), Expect = 3e-60
Identities = 107/123 (86%), Positives = 121/123 (97%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
+QRQGKLEVPGYVDIVKTS+GNE+PPQD+EGWFYKRAASVARHIY+RKQVGVGKLNKLYG
Sbjct: 22 LQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYG 81
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIAAATLE 120
GAK+RGVRP+KH+DASGSINRKVLQ+LEK+G+VEISPKGGRRIS+NG RDLDRIAA TLE
Sbjct: 82 GAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLE 141
Query: 121 DEE 123
++E
Sbjct: 142 EDE 144
>SPBC649.02 [J] KOG3411 40S ribosomal protein S19
Length = 143
Score = 156 bits (394), Expect = 5e-39
Identities = 77/123 (62%), Positives = 95/123 (76%), Gaps = 1/123 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
++R GK+ P ++DIVKT EL P D + W+Y RAA++ARHIYLRKQVGVG+L K+YG
Sbjct: 22 LKRSGKMTTPQWIDIVKTGTHKELAPYDPD-WYYVRAAAIARHIYLRKQVGVGRLCKVYG 80
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIAAATLE 120
G+ NRG+RP H D SGS+ RKV+QSLEK+GV+E S GGRRIS G RDLDRIA + LE
Sbjct: 81 GSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIAYSLLE 140
Query: 121 DEE 123
DEE
Sbjct: 141 DEE 143
>SPBC21C3.13 [J] KOG3411 40S ribosomal protein S19
Length = 144
Score = 152 bits (385), Expect = 5e-38
Identities = 75/122 (61%), Positives = 94/122 (76%), Gaps = 1/122 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
++R GK+ P ++DIVKT EL P D + W+Y RAA++ARHIYLRKQVGVG+L K+YG
Sbjct: 22 LKRSGKMTTPQWIDIVKTGTHKELAPYDPD-WYYVRAAAIARHIYLRKQVGVGRLCKVYG 80
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIAAATLE 120
G+ NRG+RP H D SGS+ RKV+QSLEK+GV+E S GGRRIS G RDLDRIA + LE
Sbjct: 81 GSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIAYSLLE 140
Query: 121 DE 122
+E
Sbjct: 141 EE 142
>At3g02080 [J] KOG3411 40S ribosomal protein S19
Length = 143
Score = 117 bits (294), Expect = 2e-27
Identities = 57/115 (49%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
++R GK+E+P + DIVKT EL P D + W+Y RAAS+AR +YLR +GVG ++YG
Sbjct: 23 LKRSGKIELPTWTDIVKTGKLKELAPYDPD-WYYIRAASMARKVYLRGGLGVGAFRRIYG 81
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIA 115
G+K G RP +SG I R +LQ LE + +VE+ KGGRRI+ +G RDLD++A
Sbjct: 82 GSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVA 136
>At5g15520 [J] KOG3411 40S ribosomal protein S19
Length = 143
Score = 117 bits (293), Expect = 3e-27
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
++R GK+E+P + DIVKT EL P D + W+Y RAAS+AR IYLR +GVG ++YG
Sbjct: 23 LKRSGKIELPLWTDIVKTGRLKELAPYDPD-WYYIRAASMARKIYLRGGLGVGAFRRIYG 81
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIA 115
G+K G RP +SG I R +LQ LE + +VE+ KGGRRI+ +G RDLD++A
Sbjct: 82 GSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVA 136
>Hs4506695 [J] KOG3411 40S ribosomal protein S19
Length = 145
Score = 114 bits (285), Expect = 2e-26
Identities = 59/115 (51%), Positives = 76/115 (65%), Gaps = 1/115 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
+++ GKL+VP +VD VK + EL P D E WFY RAAS ARH+YLR GVG + K+YG
Sbjct: 22 LKKSGKLKVPEWVDTVKLAKHKELAPYD-ENWFYTRAASTARHLYLRGGAGVGSMTKIYG 80
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIA 115
G + GV P S S+ R+VLQ+LE L +VE GGR+++ G RDLDRIA
Sbjct: 81 GRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIA 135
>At5g61170 [J] KOG3411 40S ribosomal protein S19
Length = 143
Score = 113 bits (282), Expect = 5e-26
Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
++R GK+E+P + DIVKT EL P D + W+Y RAAS+AR +YLR +GVG ++YG
Sbjct: 23 LKRSGKIELPLWTDIVKTGKLKELAPYDPD-WYYIRAASMARKVYLRGGLGVGAFRRIYG 81
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIA 115
G+K G RP +SG + R +LQ L+ + +V++ KGGR+I+ +G RDLD++A
Sbjct: 82 GSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVA 136
>7293252 [J] KOG3411 40S ribosomal protein S19
Length = 156
Score = 111 bits (277), Expect = 2e-25
Identities = 57/115 (49%), Positives = 73/115 (62%), Gaps = 1/115 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
+++ GKL+VP +DIVKT+ EL P D + WFY R AS+ RH+Y R GVG + K+YG
Sbjct: 22 LKKTGKLKVPDQMDIVKTAKFKELAPYDPD-WFYVRCASILRHLYHRSPAGVGSITKIYG 80
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIA 115
G K GV P A+ RK LQ+LE +VE P GGR++S G RDLDRIA
Sbjct: 81 GRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIA 135
>7301072 [J] KOG3411 40S ribosomal protein S19
Length = 155
Score = 105 bits (261), Expect = 1e-23
Identities = 53/115 (46%), Positives = 69/115 (59%), Gaps = 1/115 (0%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
+++ GK+ VP +KT E P D + WFY R AS+ RH+YLR GVG K+Y
Sbjct: 22 LKKSGKIFVPEQAVYMKTGKFKETAPTDDD-WFYTRCASIMRHLYLRSPAGVGAFTKVYS 80
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIA 115
G K GVRP KH +S RK LQ+LE +VE P GGR+++ G R+LDRIA
Sbjct: 81 GRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQRNLDRIA 135
>CE13265 [J] KOG3411 40S ribosomal protein S19
Length = 146
Score = 102 bits (255), Expect = 6e-23
Identities = 55/118 (46%), Positives = 76/118 (63%), Gaps = 3/118 (2%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYG 60
+++ GK++VP + D+VK EL P D + WFY RAAS+ARH+Y R G+G K+YG
Sbjct: 23 LKKSGKVKVPEWSDLVKLGVNKELAPVDPD-WFYTRAASLARHLYFRP-AGIGAFKKVYG 80
Query: 61 GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKG-GRRISDNGLRDLDRIAAA 117
G K RGV P+ ++G+ RK +Q LEK+ VE P G GR +S G +DLDRIA +
Sbjct: 81 GNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRIATS 138
>ECU11g1620i [J] KOG3411 40S ribosomal protein S19
Length = 137
Score = 64.3 bits (155), Expect = 3e-11
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 14 DIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYGGAKNRGVRPHKHV 73
DI+KT G E P + E W++ R AS+ R I ++ V L K YG KNRG RP K+V
Sbjct: 34 DIMKTGEGREQAPIE-EDWYFTRMASIVRQISIKGAVTSEFLAKRYGSLKNRGCRPSKYV 92
Query: 74 DASGSINRKVLQSLEKLGVVEISPK 98
A I VL++L+ +G + PK
Sbjct: 93 GAYPEIGESVLENLKNMGWINEHPK 117
>Hs22050228 [J] KOG3411 40S ribosomal protein S19
Length = 284
Score = 37.7 bits (86), Expect = 0.003
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 39 SVARHIYLRKQVGVGKLNKLYGGAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPK 98
S+ HI L GV + K+Y G +++ V P S + R VLQ+ E L +VE
Sbjct: 176 SIGGHI-LSGDAGVDSMTKIYAGHQSKSVMPSHFSRGSKRMARWVLQAQEGLKMVEKDQD 234
Query: 99 GGRRISDNG 107
GG +++ G
Sbjct: 235 GGCKVTPQG 243
>CE29398 [T] KOG0689 Guanine nucleotide exchange factor for Rho and Rac
GTPases
Length = 633
Score = 33.5 bits (75), Expect = 0.048
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVG 51
+ QGKL G + I ++ AGN P+D + ++++A +A HI +K+ G
Sbjct: 435 LSAQGKLIHQGTLQISESIAGNVQKPKDRRIFLFEQSAIIADHIPPKKEFG 485
>CE19467 [T] KOG0689 Guanine nucleotide exchange factor for Rho and Rac
GTPases
Length = 552
Score = 33.5 bits (75), Expect = 0.048
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVG 51
+ QGKL G + I ++ AGN P+D + ++++A +A HI +K+ G
Sbjct: 354 LSAQGKLIHQGTLQISESIAGNVQKPKDRRIFLFEQSAIIADHIPPKKEFG 404
>CE19466 [T] KOG0689 Guanine nucleotide exchange factor for Rho and Rac
GTPases
Length = 928
Score = 33.5 bits (75), Expect = 0.048
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVG 51
+ QGKL G + I ++ AGN P+D + ++++A +A HI +K+ G
Sbjct: 440 LSAQGKLIHQGTLQISESIAGNVQKPKDRRIFLFEQSAIIADHIPPKKEFG 490
>CE19464 [T] KOG4240 Multidomain protein contains SPEC repeats PH SH3 and
separate rac-specific and rho-specific guanine nucleotide
exchange factor domains
Length = 2488
Score = 33.5 bits (75), Expect = 0.048
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MQRQGKLEVPGYVDIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVG 51
+ QGKL G + I ++ AGN P+D + ++++A +A HI +K+ G
Sbjct: 2000 LSAQGKLIHQGTLQISESIAGNVQKPKDRRIFLFEQSAIIADHIPPKKEFG 2050
>Hs13540576 [S] KOG3683 Uncharacterized conserved protein
Length = 651
Score = 30.0 bits (66), Expect = 0.53
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 25 PPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKLYGGAKNRGVRPHKHVDASGSINRKVL 84
P D++ + +R A++A +V K K +GG G R + +++A+G+ NR+VL
Sbjct: 123 PTNDNDEFEKQRTAAIA-------EVAKSKETKTFGGGGG-GARSNLNMNAAGNRNREVL 174
Query: 85 Q 85
Q
Sbjct: 175 Q 175
>ECU11g0610 [A] KOG1896 mRNA cleavage and polyadenylation factor II complex
subunit CFT1 (CPSF subunit)
Length = 1156
Score = 28.9 bits (63), Expect = 1.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 50 VGVGKLNKLYG----GAKNRGVRPHKHVDASGSINRKVLQSLEKLGVVEISPKGGRRISD 105
+GVG ++G G KNR +R KH++ +G V+ S E+ G SPKG + D
Sbjct: 749 LGVGASQYVFGNGLVGKKNRVLRTPKHIECAG--RYMVVGSCEEAG---FSPKGEK---D 800
Query: 106 NGL 108
+G+
Sbjct: 801 SGI 803
>7295715 [G] KOG1050 Trehalose-6-phosphate synthase component TPS1 and
related subunits
Length = 809
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 14 DIVKTSAGNELPPQDSEGWFYKRAASVARHIYLRKQVGVGKLNKL-YGGAKNRGVRPHKH 72
DIVKT+A + LP DS Y V RH RK + N L Y K GV+
Sbjct: 745 DIVKTAADHRLPSTDS---VYTLLKWVERHFMGRK----ARANSLTYRPTKGDGVQMQMS 797
Query: 73 VDASGSIN 80
++ + S N
Sbjct: 798 LEVAASAN 805
>Hs4506195 [O] KOG0177 20S proteasome regulatory subunit beta type PSMB2/PRE1
Length = 201
Score = 27.3 bits (59), Expect = 3.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 81 RKVLQSLEKLGVVEISPKGGRRISDNGLRDLDRIA 115
RK L+ L+K ++ + R I NG+ DLD I+
Sbjct: 161 RKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNIS 195
>At5g61470 [R] KOG1721 FOG: Zn-finger
Length = 304
Score = 26.9 bits (58), Expect = 4.5
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 53 GKLNKLYGGAKNRGVRPHKHV-DASGSINRKVLQSLEKLGVVEISPKGGR-RISD 105
G N YGG + RG + K+ D G KVL+S + LG S K R +ISD
Sbjct: 209 GDENAYYGGKRKRGKKQSKYTCDTCG----KVLRSYQALGGHRTSHKYKRLKISD 259
>7290390 [T] KOG1217 Fibrillins and related proteins containing Ca2+-binding
EGF-like domains
Length = 2634
Score = 26.9 bits (58), Expect = 4.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 42 RHIYLRKQVGVGKLNKLYGGAKNRGV 67
RH +KQ G LN L GGA GV
Sbjct: 2459 RHATQQKQFGGSNLNSLLGGANGGGV 2484
>7298458 [E] KOG1288 Amino acid transporters
Length = 941
Score = 26.6 bits (57), Expect = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 58 LYGGAKNRGVRPHKHVDASGSI 79
L+GG++N G RPH D G +
Sbjct: 30 LFGGSQNSGDRPHTPQDGDGYV 51
>SPBC1A4.03c [B] KOG0355 DNA topoisomerase type II
Length = 1485
Score = 26.2 bits (56), Expect = 7.7
Identities = 16/43 (37%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
Query: 9 VPGYVDIVKTSAGNELPPQDSEGWFYKR-----AASVARHIYL 46
+PG K S+ N PP+DS+ KR AA+V IY+
Sbjct: 1411 IPGSSSTPKASSTNAEPPEDSDSPIRKRPTRRAAATVKTPIYV 1453
>At5g49110 [S] KOG4553 Uncharacterized conserved protein
Length = 1487
Score = 26.2 bits (56), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 95 ISPKGGRRISDNGLRDLDRIAAATLEDEE 123
+SP+ +S GL IAAAT ED+E
Sbjct: 1422 LSPRNASSVSSPGLDSDKTIAAATEEDDE 1450
>7291597 [Q] KOG0061 Transporter ABC superfamily (Breast cancer resistance
protein)
Length = 477
Score = 26.2 bits (56), Expect = 7.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 42 RHIYLRKQVGVGKLNKLYGGAKNRGVRPHKHVDASGSINRKV---------------LQS 86
RH+ R+++ LN++YG ++ P ASGS ++ + ++
Sbjct: 210 RHLCTRRRIAKHSLNQVYG--EDSFETPSGESSASGSGSKSIEMEVVAESHESLLQTMRE 267
Query: 87 LEKLGVVEISPKG 99
L LGV+ SP G
Sbjct: 268 LPALGVLSNSPNG 280
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,468,101
Number of Sequences: 60738
Number of extensions: 285964
Number of successful extensions: 429
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 28
length of query: 123
length of database: 30,389,216
effective HSP length: 99
effective length of query: 24
effective length of database: 24,376,154
effective search space: 585027696
effective search space used: 585027696
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)