ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1895 good J KOG1714 Translation, ribosomal structure and biogenesis 60s ribosomal protein L18
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1895 649488 649288 -67
(67 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL120c [J] KOG1714 60s ribosomal protein L18 79 1e-15
YNL301c [J] KOG1714 60s ribosomal protein L18 79 1e-15
SPBC11C11.07 [J] KOG1714 60s ribosomal protein L18 51 3e-07
At5g27850 [J] KOG1714 60s ribosomal protein L18 50 4e-07
CE16650 [J] KOG1714 60s ribosomal protein L18 49 1e-06
At3g05590 [J] KOG1714 60s ribosomal protein L18 48 3e-06
>YOL120c [J] KOG1714 60s ribosomal protein L18
Length = 186
Score = 79.0 bits (193), Expect = 1e-15
Identities = 37/41 (90%), Positives = 38/41 (92%)
Query: 1 MGIDHTSKQHKRSSHRTAPKSDNVYLKLLVKLYAFLARMSD 41
MGIDHTSKQHKRS HRTAPKSDNVYLKLLVKLY FLAR +D
Sbjct: 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTD 41
>YNL301c [J] KOG1714 60s ribosomal protein L18
Length = 186
Score = 79.0 bits (193), Expect = 1e-15
Identities = 37/41 (90%), Positives = 38/41 (92%)
Query: 1 MGIDHTSKQHKRSSHRTAPKSDNVYLKLLVKLYAFLARMSD 41
MGIDHTSKQHKRS HRTAPKSDNVYLKLLVKLY FLAR +D
Sbjct: 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTD 41
>SPBC11C11.07 [J] KOG1714 60s ribosomal protein L18
Length = 187
Score = 51.2 bits (121), Expect = 3e-07
Identities = 27/56 (48%), Positives = 37/56 (65%), Gaps = 1/56 (1%)
Query: 1 MGIDHTSKQHKRSSHRTAPKSDNVYLKLLVKLYAFLARMSDNYISNDGIRREKEKK 56
MGID + H + S R+ P S+NVYLKLLVKLY FLAR +D+ + ++R + K
Sbjct: 1 MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSK 55
>At5g27850 [J] KOG1714 60s ribosomal protein L18
Length = 187
Score = 50.4 bits (119), Expect = 4e-07
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 1 MGIDHTSKQHKRSSHRTAPKSDNVYLKLLVKLYAFLARMSDN 42
MGID + + + RTAPKSD+VYLKLLVKLY FL R S++
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNS 42
>CE16650 [J] KOG1714 60s ribosomal protein L18
Length = 188
Score = 48.9 bits (115), Expect = 1e-06
Identities = 26/38 (68%), Positives = 29/38 (75%), Gaps = 1/38 (2%)
Query: 1 MGIDHTSKQHKRSSHRTAPKSDNVYLKLLVKLYAFLAR 38
MGID K H R + RTAPKS+N YL+LL KLYAFLAR
Sbjct: 1 MGIDINHK-HDRVARRTAPKSENPYLRLLSKLYAFLAR 37
>At3g05590 [J] KOG1714 60s ribosomal protein L18
Length = 187
Score = 47.8 bits (112), Expect = 3e-06
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 1 MGIDHTSKQHKRSSHRTAPKSDNVYLKLLVKLYAFLARMSDNYISNDGIRR 51
MGID + + + RTAPKSD+VYLKL VKLY FL R +++ + ++R
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKR 51
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.131 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,925,919
Number of Sequences: 60738
Number of extensions: 123559
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 30,389,216
effective HSP length: 43
effective length of query: 24
effective length of database: 27,777,482
effective search space: 666659568
effective search space used: 666659568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)