ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI1935 good L KOG1906 Replication, recombination and repair DNA polymerase sigma
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI1935 657936 659987 684
(684 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL299w [L] KOG1906 DNA polymerase sigma 583 e-166
YOL115w [L] KOG1906 DNA polymerase sigma 554 e-157
SPAC12G12.13c_2 [L] KOG1906 DNA polymerase sigma 241 3e-63
7290950 [L] KOG1906 DNA polymerase sigma 192 1e-48
At5g53770 [L] KOG1906 DNA polymerase sigma 192 2e-48
Hs5902142 [L] KOG1906 DNA polymerase sigma 187 5e-47
CE15421 [L] KOG1906 DNA polymerase sigma 147 4e-35
7301238 [L] KOG1906 DNA polymerase sigma 142 2e-33
ECU06g1520 [L] KOG1906 DNA polymerase sigma 141 4e-33
SPCC663.12 [L] KOG1906 DNA polymerase sigma 98 5e-20
At2g45620 [D] KOG2277 S-M checkpoint control protein CID1 and re... 92 3e-18
SPBC1685.06 [D] KOG2277 S-M checkpoint control protein CID1 and ... 90 1e-17
At2g39740 [D] KOG2277 S-M checkpoint control protein CID1 and re... 76 1e-13
Hs13937361 [L] KOG1906 DNA polymerase sigma 70 1e-11
SPAC821.04c [D] KOG2277 S-M checkpoint control protein CID1 and ... 68 4e-11
SPAC19D5.03 [D] KOG2277 S-M checkpoint control protein CID1 and ... 68 4e-11
Hs22052008 [D] KOG2277 S-M checkpoint control protein CID1 and r... 67 7e-11
SPAC17H9.01 [D] KOG2277 S-M checkpoint control protein CID1 and ... 60 1e-08
At3g45750 [D] KOG2277 S-M checkpoint control protein CID1 and re... 59 2e-08
7295099_2 [D] KOG2277 S-M checkpoint control protein CID1 and re... 57 9e-08
At3g61690 [L] KOG1906 DNA polymerase sigma 56 2e-07
Hs22044581 [D] KOG2277 S-M checkpoint control protein CID1 and r... 55 3e-07
7300817 [D] KOG2277 S-M checkpoint control protein CID1 and rela... 53 2e-06
CE02015 [D] KOG2277 S-M checkpoint control protein CID1 and rela... 51 7e-06
>YNL299w [L] KOG1906 DNA polymerase sigma
Length = 625
Score = 583 bits (1504), Expect = e-166
Identities = 323/641 (50%), Positives = 412/641 (63%), Gaps = 58/641 (9%)
Query: 13 PNRNRNKPVKQVKKMRKSSLSRAQKNFSVF-QQQSHENKYESLQSIRDDGEDAGDEVVFL 71
P + + K K K+MRKSS +R QK VF +SH NKYESL +I + +D +V +
Sbjct: 10 PTKGKRKEDKHTKRMRKSSFTRTQKMLEVFNDNRSHFNKYESL-AIDVEDDDTFGNLVLM 68
Query: 72 HDEGKDLNSDDIDEVSVSXXXXXXXXXXXXXXXXXXXPVGTADGIIGNNSLDANEDFIAF 131
++ D++ I+EV+ S A+ NNSL+ N+DFIAF
Sbjct: 69 ENDKSDVDIPVIEEVTSSEDEQ------------------RAESSKRNNSLEDNQDFIAF 110
Query: 132 DLSXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXDKLRHNADFPWILNHDHSKQR 185
S + N ++PWI NH HSKQR
Sbjct: 111 SDSSEDETEQIKEDDDERSSFLLTDEHEVSKLTSQQSLNTESACNVEYPWIRNHCHSKQR 170
Query: 186 EIADWLTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLP 245
IADWLT EIKDFV YISP++ EI+ RN+ I KL+ AV ELW D+ L+ FGS+ATDLYLP
Sbjct: 171 RIADWLTSEIKDFVHYISPSKNEIKCRNRTIDKLRRAVKELWSDADLHVFGSFATDLYLP 230
Query: 246 GSDIDCVVRSASGDKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHID 305
GSDIDCVV S + DKE+RN +Y LA LK K LA ++EVI K RVPIIKF+EP+S++HID
Sbjct: 231 GSDIDCVVNSRNRDKEDRNYIYELARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHID 290
Query: 306 VSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVYT 365
VSFERTNGLEAA++IR WL + PGLRELVLI+KQFLH+RRLNNVHTGGLGG+++ICLVY+
Sbjct: 291 VSFERTNGLEAAKLIREWLRDSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLVYS 350
Query: 366 FLKLHPRVLTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNEHPDLS 425
FL +HPR+ + DID L+NLGVLLIDFFELYGKNFGYDDV IS+S+ A YIPK+ L
Sbjct: 351 FLNMHPRIKSNDIDVLDNLGVLLIDFFELYGKNFGYDDVAISISDGYASYIPKSCWRTLE 410
Query: 426 AGRPRFSLLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFELDSATFKDRIGSS 485
R +FSL IQDPGDP+NNISRGSFN++DIKK FAGAF+LL N+C+EL+SATFKDR+G S
Sbjct: 411 PSRSKFSLAIQDPGDPNNNISRGSFNMKDIKKAFAGAFELLVNKCWELNSATFKDRVGKS 470
Query: 486 ILGNVIKYKGTKRDFNDERDLVINEAIQENEKYHNKRGRIVHDDLFTDISDIEAEEEIYQ 545
ILGNVIKY+G KRDFNDERDLV N+AI ENE+YH +R RIV +DLF + ++ EEIY+
Sbjct: 471 ILGNVIKYRGQKRDFNDERDLVQNKAIIENERYHKRRTRIVQEDLFINDTEDLPVEEIYK 530
Query: 546 VQEPPTXXXXXXXXXXXXXXXXXXXXXXXXQQLKENTERVQEVEEDNY-DPTEAIIVND- 603
+ EP +Q + +R E+++ P V+
Sbjct: 531 LDEP-----------------------AKKKQKAKKDKREGEIKKSAIPSPPPDFGVSRS 567
Query: 604 ------EPSEQEDDYDPSKPSVDDYMGLPEENNDENDKDTK 638
+ ++Q + S+DD MGL EN+ E+D+D K
Sbjct: 568 KLKRKVKKTDQGSLLHQNNLSIDDLMGL-SENDQESDQDQK 607
>YOL115w [L] KOG1906 DNA polymerase sigma
Length = 584
Score = 554 bits (1427), Expect = e-157
Identities = 269/386 (69%), Positives = 316/386 (81%), Gaps = 5/386 (1%)
Query: 170 NADFPWILNHDHSKQREIADWLTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPD 229
N D+PWILNHDHSKQ+EI+DWLT EIKDFV+YISP+R+EIE RNQ I+ ++EAV +LWPD
Sbjct: 158 NTDYPWILNHDHSKQKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPD 217
Query: 230 SSLNCFGSYATDLYLPGSDIDCVVRSASGDKENRNALYSLASFLKRKQLATQVEVIAKAR 289
+ L+ FGSY+TDLYLPGSDIDCVV S G KE+RN LYSLAS LK+K LAT+VEV+AKAR
Sbjct: 218 ADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKAR 277
Query: 290 VPIIKFVEPESKIHIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNV 349
VPIIKFVEP S IHIDVSFERTNG+EAA++IR WL++ PGLRELVLIVKQFLHARRLNNV
Sbjct: 278 VPIIKFVEPHSGIHIDVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNV 337
Query: 350 HTGGLGGYSIICLVYTFLKLHPRVLTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVS 409
HTGGLGG+SIICLV++FL +HPR++T +IDP +NLGVLLI+FFELYGKNFGYDDV + S
Sbjct: 338 HTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSS 397
Query: 410 EHEARYIPKNEHPDLSAGRPRFSLLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANR 469
+ Y PK+ + + FSL IQDPGD SNNISRGSFN+RDIKK FAGAFDLL NR
Sbjct: 398 DGYPVYFPKSTWSAIQPIKNPFSLAIQDPGDESNNISRGSFNIRDIKKAFAGAFDLLTNR 457
Query: 470 CFELDSATFKDRIGSSILGNVIKYKGTKRDFNDERDLVINEAIQENEKYHNKRGRIVHD- 528
CFEL SATFKDR+G SILGNVIKY+G RDF DER LV+N+AI ENE YH KR RI+HD
Sbjct: 458 CFELHSATFKDRLGKSILGNVIKYRGKARDFKDERGLVLNKAIIENENYHKKRSRIIHDE 517
Query: 529 ----DLFTDISDIEAEEEIYQVQEPP 550
D T + ++ Y++ PP
Sbjct: 518 DFAEDTVTSTATATTTDDDYEITNPP 543
>SPAC12G12.13c_2 [L] KOG1906 DNA polymerase sigma
Length = 459
Score = 241 bits (615), Expect = 3e-63
Identities = 128/303 (42%), Positives = 192/303 (63%), Gaps = 5/303 (1%)
Query: 174 PWILNHDHSKQREIADWLTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLN 233
PW + + +RE++ +I F+ YI+P +E R ++++ +AV++ WPD SL
Sbjct: 1 PW--HRQYKVEREVSRIFHQDILHFIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLY 58
Query: 234 CFGSYATDLYLPGSDIDCVVRSASGD-KENRNALYSLASFLKRKQLATQVEVIAKARVPI 292
FGS+ T LYLP SD+D V+ S + + ++ LA LK+ +LA++V+VI A VPI
Sbjct: 59 VFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKKLKLASEVQVITTANVPI 118
Query: 293 IKFVEPESKIHIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTG 352
IKFV+P +K+H+D+SF + GL+ V+ G++++ P LR LV+I+K FL+ R LN V G
Sbjct: 119 IKFVDPLTKVHVDISFNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHFLNMRALNEVFLG 178
Query: 353 GLGGYSIICLVYTFLKLHPRVLTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHE 412
GL Y+I+CLV +FL+LHPR+ TG + +N GVLL++F ELYGK F YD VGI+V +
Sbjct: 179 GLSSYAIVCLVVSFLQLHPRLSTGSMREEDNFGVLLLEFLELYGKQFYYDAVGIAV-HNG 237
Query: 413 ARYIPKNEHPDLSAGRPRFSLLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFE 472
Y K + L +P + L IQDP D N++S+ S L +K FA FDLL ++ +
Sbjct: 238 GFYFSKKKMGWLKPNQP-YLLSIQDPVDFQNDVSKSSRGLLRVKATFANGFDLLTSKLYA 296
Query: 473 LDS 475
L S
Sbjct: 297 LAS 299
>7290950 [L] KOG1906 DNA polymerase sigma
Length = 1059
Score = 192 bits (488), Expect = 1e-48
Identities = 114/310 (36%), Positives = 178/310 (56%), Gaps = 8/310 (2%)
Query: 194 EIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVV 253
EI+ F Y+ P E RN+ + +++ V +WP + + FGS+ T L+LP SDID VV
Sbjct: 274 EIEHFYQYVLPTPCEHAIRNEVVKRIEAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVV 333
Query: 254 RSASGDKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHIDVSFERTNG 313
R + L S + A V V+ KA VPIIK + E+++ +D+SF +G
Sbjct: 334 LGLWEKLPLRTLEFELVS--RGIAEACTVRVLDKASVPIIKLTDRETQVKVDISFNMQSG 391
Query: 314 LEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVYTFLKLHPRV 373
+++A +I+ + + P L +LVL++KQFL R LN V TGG+ YS+I + +FL++HPR
Sbjct: 392 VQSAELIKKFKRDYPVLEKLVLVLKQFLLLRDLNEVFTGGISSYSLILMCISFLQMHPRG 451
Query: 374 LTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNE-HPDLSAGRPRFS 432
+ D NLGVLL++FFELYG+ F Y +GIS+ ++ RY+PK+E D+ G
Sbjct: 452 IYHD---TANLGVLLLEFFELYGRRFNYMKIGISI-KNGGRYMPKDELQRDMVDGHRPSL 507
Query: 433 LLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFELDSATFKDRIGSSILGNVIK 492
L I+DP P N+I R S+ + +++ F A+ +LA L+ R+ +SILG +I
Sbjct: 508 LCIEDPLTPGNDIGRSSYGVFQVQQAFKCAYRVLALAVSPLNLLGIDPRV-NSILGRIIH 566
Query: 493 YKGTKRDFND 502
D+ +
Sbjct: 567 ITDDVIDYRE 576
>At5g53770 [L] KOG1906 DNA polymerase sigma
Length = 533
Score = 192 bits (487), Expect = 2e-48
Identities = 116/299 (38%), Positives = 165/299 (54%), Gaps = 8/299 (2%)
Query: 194 EIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVV 253
EI DF ++ P + E +R+ A+ + + +WP + FGSY T LYLP SDID V+
Sbjct: 124 EIVDFCDFLLPTQAEKAERDAAVESVSSVIKYIWPSCKVEVFGSYKTGLYLPTSDIDVVI 183
Query: 254 RSASGDKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHIDVSFERTNG 313
SG + L +L+ L ++ +A + VIAKARVPIIKFVE +S I D+SF+ NG
Sbjct: 184 LE-SGLTNPQLGLRALSRALSQRGIAKNLLVIAKARVPIIKFVEKKSNIAFDLSFDMENG 242
Query: 314 LEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVYTFLKLHPRV 373
+AA I+ + + P LR L LI+K FL R LN V++GG+G Y+++ ++ FLK+ +
Sbjct: 243 PKAAEFIQDAVSKLPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLIAFLKVQVYL 302
Query: 374 LTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNEHPDLSAGRPRFSL 433
G P NLGVLL+ FF+ YG+ DVGIS + + K L+ RP +
Sbjct: 303 KDGRSAPEHNLGVLLVKFFDFYGRKLNTADVGIS-CKMGGSFFSKYNKGFLNRARPSL-I 360
Query: 434 LIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFELDSATFKDRIGSSILGNVIK 492
I+DP P N+I + SFN I+ FA A L N A SILG +I+
Sbjct: 361 SIEDPQTPENDIGKSSFNYFQIRSAFAMALSTLTN-----TKAILSLGPNRSILGTIIR 414
>Hs5902142 [L] KOG1906 DNA polymerase sigma
Length = 542
Score = 187 bits (475), Expect = 5e-47
Identities = 111/294 (37%), Positives = 173/294 (58%), Gaps = 11/294 (3%)
Query: 202 ISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVVRSASGDKE 261
+SP +E R + + +++ V +LWP + + FGS++T LYLP SDID VV K
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFG----KW 56
Query: 262 NRNALYSLASFLKRKQLAT--QVEVIAKARVPIIKFVEPESKIHIDVSFERTNGLEAARV 319
R L L L++ +A ++V+ KA VPIIK + E+++ +D+SF G+ AA
Sbjct: 57 ERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEF 116
Query: 320 IRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVYTFLKLHPRVLTGDID 379
I+ ++++ L L+L++KQFL R LN V TGG+ YS+I + +FL+LHPR+ D
Sbjct: 117 IKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRAD 176
Query: 380 PLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNE-HPDLSAGRPRFSLLIQDP 438
ENLG+LL++FFELYG+NF Y GI + E A YI K E +++G L I+DP
Sbjct: 177 --ENLGMLLVEFFELYGRNFNYLKTGIRIKEGGA-YIAKEEIMKAMTSGYRPSMLCIEDP 233
Query: 439 GDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFELDSATFKDRIGSSILGNVIK 492
P N++ R S+ +K+ F A+ +L++ L + ++ +R S LG +IK
Sbjct: 234 LLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPL-ARSYPNRDAESTLGRIIK 286
>CE15421 [L] KOG1906 DNA polymerase sigma
Length = 848
Score = 147 bits (372), Expect = 4e-35
Identities = 103/320 (32%), Positives = 161/320 (50%), Gaps = 30/320 (9%)
Query: 194 EIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSL--NCFGSYATDLYLPGSDIDC 251
EI D +I PN E R + K++++V+ W ++ + FGS T+L+LP SDID
Sbjct: 58 EIVDMYHWIKPNEIESRLRTKVFEKVRDSVLRRWKQKTIKISMFGSLRTNLFLPTSDIDV 117
Query: 252 VVRSASGDKENRNALYSLASFL-------KRKQLATQVEVIAKARVPIIKFVEPESKIHI 304
+V + +Y L +L + +A V V A VPI+K V+ ++++ I
Sbjct: 118 LVECDDWVGTPGDFIYLLIQWLAETARGLEADNIAESVMVYGGAFVPIVKMVDRDTRLSI 177
Query: 305 DVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVY 364
D+SF G+ AA I EE P + LVL++KQFLH R LN TGGL Y ++ L+
Sbjct: 178 DISFNTVQGVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNLNQTFTGGLSSYGLVLLLV 237
Query: 365 TFLKLHPRVLTGD--IDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNE-- 420
F +L+ + D NLG LL+ F ELY F ++++GIS + YIPK+
Sbjct: 238 NFFQLYALNMRSRTIYDRGVNLGHLLLRFLELYSLEFNFEEMGISPG--QCCYIPKSASG 295
Query: 421 ----HPDLSAGRPRFSLLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFELDSA 476
H G +L ++DP +N++ R ++N I F AF +L L +
Sbjct: 296 ARYGHKQAQPG----NLALEDPLLTANDVGRSTYNFSSIANAFGQAFQIL------LVAV 345
Query: 477 TFKDRIGSSILGNVIKYKGT 496
T ++R G + + + YKG+
Sbjct: 346 TLRERKGKNHVA-MRAYKGS 364
>7301238 [L] KOG1906 DNA polymerase sigma
Length = 407
Score = 142 bits (357), Expect = 2e-33
Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 13/303 (4%)
Query: 194 EIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVV 253
EI+ F +YI E R A+ ++++ V+ +WP +S++ FGS+ T L LP SDID VV
Sbjct: 31 EIEQFYNYIRSTPTEFCLRAGAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVV 90
Query: 254 RSASGDKENRNALYSLASFLKRKQLA--TQVEVIAKARVPIIKFVEPESKIHIDVSFER- 310
N L+ L + L + + V V+ KA VP++KF + S+I DV+F
Sbjct: 91 YYKFW---NPRLLHELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSV 147
Query: 311 TNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVH-TGGLGGYSIICLVYTFLKL 369
+G++AA +I+ ++ P L +LV+++KQFL N V+ +GG+ Y++ +V +FL+
Sbjct: 148 ASGVQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLMVISFLQQ 207
Query: 370 HPRVLTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNEHPDLSAGRP 429
H R + L +LLI F + YG+ F + GISV L
Sbjct: 208 HAR-SNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGGCVEKARLRSTLGENNW 266
Query: 430 RFSLLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFELDSATFKDRIGSSILGN 489
+ L I+DP P+N+I R S+ + + +GF AF L ++ + DS+ +I IL N
Sbjct: 267 QSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAFVKL-SKLVDSDSS----KIVGPILAN 321
Query: 490 VIK 492
+++
Sbjct: 322 IVE 324
>ECU06g1520 [L] KOG1906 DNA polymerase sigma
Length = 370
Score = 141 bits (355), Expect = 4e-33
Identities = 96/285 (33%), Positives = 152/285 (52%), Gaps = 24/285 (8%)
Query: 191 LTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDID 250
L LE+ ++P EI R K+K+ +V +P +S+ FGSY T L +P SDID
Sbjct: 58 LDLELLQLYQKLAPTTIEINARIYIFEKIKKLIVREFPSASVMPFGSYTTGLIVPSSDID 117
Query: 251 CVVRSASG-DKENRN-------ALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKI 302
V+ + DKE+ N L A+F+K++ V I K R+PI+KF +
Sbjct: 118 INVQLSDNIDKEHVNKHLSKIKTLMFRANFVKKET----VFHIKKCRIPILKFRDGIFGF 173
Query: 303 HIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICL 362
ID+S + NG+ AA+ I L+E P ++ +++K FL R+ ++ TGGL YS L
Sbjct: 174 RIDISVNQANGVNAAKFITYTLKEYPYIKVFAILLKHFLTIRKQSDAATGGLNSYSQFLL 233
Query: 363 VYTFLKLHPRVLTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNEHP 422
+ +F +LHP V G + PL+N+GVL +DFF+ YG +F Y IS+ ++ Y+ N
Sbjct: 234 LLSFFQLHPLVQEGLVSPLKNIGVLFMDFFQYYGCDFPYKVAKISI--NKTGYVKNN--- 288
Query: 423 DLSAGRPRFSLLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLA 467
AG L I+DP +P +++ N + F+ AF +++
Sbjct: 289 ---AG----MLSIEDPTNPECDVAAVCRNSGLVLGIFSHAFKVMS 326
>SPCC663.12 [L] KOG1906 DNA polymerase sigma
Length = 336
Score = 97.8 bits (242), Expect = 5e-20
Identities = 79/289 (27%), Positives = 143/289 (49%), Gaps = 16/289 (5%)
Query: 198 FVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVVRSAS 257
F+ ++SP +E++ R + KL+ + E+ D+ L +GS L SD+D ++S
Sbjct: 27 FLEFVSPKIEELKYRKLLLEKLQTHIREVVLDAELQVYGSMYIGTTLSISDVDVSLKSPR 86
Query: 258 -GDKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHIDVSFERTNGLEA 316
G+ E R L RK L + + ARVP I V+ S I +D++F
Sbjct: 87 VGELEKRRVTMVL-----RKYLDADADFHSSARVPRINLVDV-SGIGVDLTFGNDKACRT 140
Query: 317 ARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVYTFLKL--HPRVL 374
A + + + EE P L++++K +L R L NVH GG+ ++ ++ +L++ H + +
Sbjct: 141 AELQKAYNEEHPIFGRLLMLLKHWLFERDLENVHHGGIASCALSYMLIGWLEMRFHKKGI 200
Query: 375 TGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNEHPDLSAGRPRFSLL 434
++ P+ LL FF +G + Y+ + + +PK + L+ +P L
Sbjct: 201 DSEVQPIR---ALLQKFFYFWGVEWTYE--LFVLRPLTGQIVPKLQKGWLNEVQPNL-LS 254
Query: 435 IQDPGDPSNNISRGSFNLRDIKKGF-AGAFDLLANRCFELDSATFKDRI 482
I+DP D +N+I + SF + IK F A A +LL+++ + A +D +
Sbjct: 255 IEDPIDRNNDIGKQSFQISMIKAAFVASANELLSDKTWFSTFAITEDEM 303
>At2g45620 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 759
Score = 92.0 bits (227), Expect = 3e-18
Identities = 74/302 (24%), Positives = 133/302 (43%), Gaps = 36/302 (11%)
Query: 204 PNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVVRSASGDKENR 263
P +E+E++ Q +A L+ V + WP + L +GS A P SDID + D
Sbjct: 447 PAEEELEKQRQLMAHLENLVAKEWPHAKLYLYGSCANSFGFPKSDIDVCLAIEGDDINKS 506
Query: 264 NALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHIDVSFERTNGLEAARVIRGW 323
L LA L+ L V+ + +ARVPI+K ++P + I D+ + +++R +
Sbjct: 507 EMLLKLAEILESDNLQN-VQALTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLRDY 565
Query: 324 LEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSII----CLVYTFLKLHPRVLT---- 375
+ LR+L IVK + +RR+N + G L Y+ + L Y++ + T
Sbjct: 566 AQIDVRLRQLAFIVKHWAKSRRVNETYQGTLSSYASVGRQFFLAYSYYLMQEMEPTYSVR 625
Query: 376 ---------GDIDPLENLG--------VLLIDFFE--LYGKNFGYDDVGISVSEHEARYI 416
++D L N G L+ FF Y ++ Y+ V + +
Sbjct: 626 VDNIRCTYFDNVDRLRNFGSNNRETIAELVWGFFNYWAYAHDYAYNVVSVRTGSILGK-- 683
Query: 417 PKNEHPDLSAGRPRFSLLIQDPGDPSNNISR--GSFNLRDIKKGFAGAFDLL---ANRCF 471
+ + G R + I+DP + S+++ R F++R +++ F A ++ N C
Sbjct: 684 -REKDWTRRVGNDRHLICIEDPFETSHDLGRVVDKFSIRVLREEFERAARIMHQDPNPCA 742
Query: 472 EL 473
+L
Sbjct: 743 KL 744
>SPBC1685.06 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 478
Score = 89.7 bits (221), Expect = 1e-17
Identities = 83/315 (26%), Positives = 147/315 (46%), Gaps = 40/315 (12%)
Query: 191 LTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCF--GSYATDLYLPGSD 248
LT E + P+ +E+ +R Q + KL+ + D+ L+ F GS +L + SD
Sbjct: 47 LTNECWKLYMRLKPSNEEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNLAIQQSD 106
Query: 249 ID-CVVRSASGDKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHIDVS 307
+D C++ + S + N+ LA L + Q+ +++ARVPI+K +P+ IH D++
Sbjct: 107 VDVCIITNGS---KYLNSTCQLAQLLYSYGMK-QIVCVSRARVPIVKIWDPQFDIHCDLN 162
Query: 308 FERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRL-NNVHTGGLGGYSIICLVYTF 366
+++R ++ P +R L LI+K + R L + +G + Y+I C++ F
Sbjct: 163 INNDVAKINTKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNF 222
Query: 367 LKL-HPRVLTGDIDPLEN-----------------------LGVLLIDFFELYGKNFGYD 402
L+ +P +L +D + N LG LLIDFF YG +F Y
Sbjct: 223 LQTRNPPILPAMLDLMSNDDNKMFVDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYL 282
Query: 403 DVGISVSEHEARYIPKNEHPDLSAGRPRFSLLIQDPGDPSNNISRGSFN--LRDIKKGFA 460
D +SV N+ A SL +++P + + N++ + N ++ ++ F
Sbjct: 283 DSVVSVRSGTV----LNKQEKGWAMEVNNSLCVEEPFNTARNLANTADNPSVKGLQSEFQ 338
Query: 461 GAFDLLA--NRCFEL 473
AF L++ N C L
Sbjct: 339 RAFRLMSENNACERL 353
>At2g39740 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 474
Score = 76.3 bits (186), Expect = 1e-13
Identities = 53/191 (27%), Positives = 98/191 (50%), Gaps = 12/191 (6%)
Query: 195 IKDFVSYISPNRQEIEQRNQAIAKLKEAV--VELWPDSSLNCFGSYATDLYLPGSDIDCV 252
+++ + I P R + + R I +L++ + VE +++ FGS+ ++L+ D+D
Sbjct: 11 LQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGDLDIS 70
Query: 253 VRSASGD-------KENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHID 305
V SG K+ + L L L+ L +++ + ARVPI+K V +I D
Sbjct: 71 VDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQRISCD 130
Query: 306 VSFERTNGLEAARVIRGWLEEQPG-LRELVLIVKQFLHARRLNNVHTGGLGGYSI-ICLV 363
+S + +GL +R + W+ E G R+LVL+VK++ A +N+ TG YS+ + ++
Sbjct: 131 ISIDNLDGLLKSRFL-FWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNSYSLSLLVI 189
Query: 364 YTFLKLHPRVL 374
+ F P +L
Sbjct: 190 FHFQTCVPAIL 200
>Hs13937361 [L] KOG1906 DNA polymerase sigma
Length = 177
Score = 70.1 bits (170), Expect = 1e-11
Identities = 45/142 (31%), Positives = 74/142 (51%), Gaps = 5/142 (3%)
Query: 362 LVYTFLKLHPRVLTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNE- 420
+ +FL+LHPR P N GVLLI+FFELYG++F Y GI + + Y+ K+E
Sbjct: 1 MAVSFLQLHPR--EDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKD-GGSYVAKDEV 57
Query: 421 HPDLSAGRPRFSLLIQDPGDPSNNISRGSFNLRDIKKGFAGAFDLLANRCFELDSATFKD 480
++ G L I+DP P N++ R S+ +K+ F A+ +L++ + + + +
Sbjct: 58 QKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPI-AKYYPN 116
Query: 481 RIGSSILGNVIKYKGTKRDFND 502
SILG +I+ + D
Sbjct: 117 NETESILGRIIRVTDEVATYRD 138
>SPAC821.04c [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 578
Score = 68.2 bits (165), Expect = 4e-11
Identities = 77/324 (23%), Positives = 144/324 (43%), Gaps = 54/324 (16%)
Query: 189 DWLTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSL--NCFGSYATDLYLPG 246
D ++ ++ + I N +E+R + KL++ + + +P ++ + FGS + L
Sbjct: 49 DLISSQLYELYDSIILNDSGLERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSLLASNA 108
Query: 247 SDID-CVVRSASGDKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHID 305
SDID C++ + + +++ R L +V I+ A+VPI+K + E ++ D
Sbjct: 109 SDIDLCII---TDPPQCAPTTCEVSAAFARNGLK-KVVCISTAKVPIVKVWDSELQLSCD 164
Query: 306 VSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGG-LGGYSIICLVY 364
+ +T R++R ++ P +R L++++K + R LN+ GG L Y+I C+V
Sbjct: 165 CNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWAKRRCLNDAAEGGTLTSYTISCMVI 224
Query: 365 TFL-KLHPRVLTG-----------------DI----DP----------LENLGVLLIDFF 392
FL K P +L D+ DP E+LG+L ++FF
Sbjct: 225 NFLQKRDPPILPSLQMLPHLQDSSTMTDGLDVSFFDDPDLVHGFGDKNEESLGILFVEFF 284
Query: 393 ELYGKNFGYDDVGISVSEHEARYIPKNEHPDLSAGRPRFS----LLIQDPGDPSNNISR- 447
+G F Y+ +S+ ++ K A +F L +++P S N++
Sbjct: 285 RFFGYLFDYEHFVLSI--RHGTFLSKR------AKGWQFQLNNFLCVEEPFHTSRNLANT 336
Query: 448 -GSFNLRDIKKGFAGAFDLLANRC 470
++ I+ F F LLA C
Sbjct: 337 ADEITMKGIQLEFRRVFRLLAYNC 360
>SPAC19D5.03 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 405
Score = 68.2 bits (165), Expect = 4e-11
Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 50/313 (15%)
Query: 207 QEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVVRSASGDKENRNAL 266
+E +++ A+ L+ + + PD+ L FGS + L L SD+D V S + + AL
Sbjct: 60 KEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIAL 119
Query: 267 YSLASFLKRKQLATQVEVIAKARVPIIKFVEPE-----SKIHIDVSFERTNGLEAARVIR 321
+ + + + +AR+PIIK + D+ F + ++
Sbjct: 120 QFYEELIAE---GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLS 176
Query: 322 GWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVYTFL------KLHPRVLT 375
+ + L+ +VL+VK + +++N+ + G L Y + +V +L + P +L
Sbjct: 177 SYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLL 236
Query: 376 G--------------------DIDPLEN---LGVLLIDFFELYGKNFGYDDVGISVSEHE 412
DI P +N LG LL FF Y F + ++ +
Sbjct: 237 SPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPD 296
Query: 413 ARYIPKNEHPDLSAG----------RPRFSLLIQDPGDPSNNISR--GSFNLRDIKKGFA 460
Y+ K E SA + R+ L I+DP + S+N+ R S L I+ F
Sbjct: 297 G-YLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFM 355
Query: 461 GAFDLLANRCFEL 473
A LL +R + +
Sbjct: 356 AASRLLNSRSYPI 368
>Hs22052008 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 480
Score = 67.4 bits (163), Expect = 7e-11
Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 44/294 (14%)
Query: 186 EIADWLTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLP 245
E D L+ +I + +++++ +L+ + L+P S L GS
Sbjct: 151 EAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTR 210
Query: 246 GSDID-CVVRSASGDKENRNALYSLASFLKRKQLATQVE------VIAKARVPIIKFVEP 298
SD D C+V + A + L L K T++ + +A+VPI+KF +
Sbjct: 211 SSDGDLCLVVKEEPVNQKTEARHILT--LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDK 268
Query: 299 ESKIHIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYS 358
S + D++ G+ ++R + + +R LVL++K++ ++N+ G L YS
Sbjct: 269 VSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYS 328
Query: 359 IICLVYTFLKLHPRVLTGDIDPL-----------------------------ENLGVLLI 389
++ +V +L+ P + + + NLG LL+
Sbjct: 329 LVLMVLHYLQTLPEPILPSLQKIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLLL 388
Query: 390 DFFELYGKNFGYDDVGISVSEHEARYIPKNEHPDLSAGRPRFSLLIQDPGDPSN 443
F + Y F ++ ISV EA+ IP+ PD R ++ + +++P D +N
Sbjct: 389 GFLKYYATEFDWNSQMISV--REAKAIPR---PDGIEWRNKY-ICVEEPFDGTN 436
>SPAC17H9.01 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 1202
Score = 60.1 bits (144), Expect = 1e-08
Identities = 48/191 (25%), Positives = 88/191 (45%), Gaps = 5/191 (2%)
Query: 191 LTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDID 250
L +++F + I P+ I KL +++ +L + CFGSY T L SD+D
Sbjct: 883 LEQSLQNFQNDIRPDTVRTTAMKAIIKKLLKSLRKLEGPVKIACFGSYRTGLMTKNSDLD 942
Query: 251 CVVRSASGDKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESKIHIDVSFER 310
V+ S+ KE Y + + + + V I AR+PIIKF + IH D+SF+
Sbjct: 943 LVIYSS---KEALLPYYDRVKSIIKNEF-SNVMPIRGARIPIIKFT-GQYNIHCDLSFDN 997
Query: 311 TNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSIICLVYTFLKLH 370
+ + +I + ++ L+++VK + R ++ H Y+ +V +L+
Sbjct: 998 LLPIHNSDLILNYSLIDERVKTLLMLVKYWASNRLIDKTHHAFPSSYTWCIMVIFYLQQI 1057
Query: 371 PRVLTGDIDPL 381
P + ++ L
Sbjct: 1058 PEPILPNLQKL 1068
>At3g45750 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 690
Score = 58.9 bits (141), Expect = 2e-08
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 17/203 (8%)
Query: 183 KQREIADWLTLEI----KDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSS-----LN 233
K+ +I ++ L++ D P + R + + L ++++ S L
Sbjct: 31 KRYKIDSYILLDLDKVLNDVYCSFRPVSADYNTRKELVKNLNTMALDIYGKSEESSPVLE 90
Query: 234 CFGSYATDLYLPGSDIDCVVRSASGDKE--NRNALYSLASFLKRKQL------ATQVEVI 285
+GS+ D+Y SD+D + +G E L L F K+ + VE I
Sbjct: 91 AYGSFVMDMYSSQSDLDVSINFGNGTSEIPREKKLEILKRFAKKLRSLQGEGQVKNVESI 150
Query: 286 AKARVPIIKFVEPESKIHIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARR 345
A+VPI+KF + + + D+S E +G+ ++++R + ++L L+VK + A
Sbjct: 151 FSAKVPIVKFSDQGTGVECDLSVENKDGILNSQIVRIISQIDGRFQKLCLLVKHWAKAHE 210
Query: 346 LNNVHTGGLGGYSIICLVYTFLK 368
+N+ L SI LV L+
Sbjct: 211 VNSALHRTLNSVSITLLVALHLQ 233
>7295099_2 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 610
Score = 57.0 bits (136), Expect = 9e-08
Identities = 49/169 (28%), Positives = 80/169 (46%), Gaps = 10/169 (5%)
Query: 235 FGSYATDLYLPGSDIDCVVRSASGDKEN-RNALYSLAS-FLKRKQLATQVEVIAKARVPI 292
FGS T L L SDID + N LY+ S FL+R + V I A VPI
Sbjct: 76 FGSLVTGLALKESDIDLFLEPNGNQPPLFHNQLYNKTSHFLRRSKCFADVFTIRHASVPI 135
Query: 293 IKFVEPESKIHIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTG 352
I+ + ++ID++ N + +R + + +REL L +K + A++L + G
Sbjct: 136 IRCKHQLTGLNIDINMSNPNSIYNSRFVGELMFRNERIRELCLFLK--IWAKKLKLISHG 193
Query: 353 GLGGYSIICLVYTFLKLHPRVLTGDIDPLENLGVLLIDFFELYGKNFGY 401
G+ Y +I L+ L+++ L + L++L +I L G N+ Y
Sbjct: 194 GMTSYCLISLIIVNLQVNR--LVPSVKELQSLCPPVI----LSGVNYAY 236
>At3g61690 [L] KOG1906 DNA polymerase sigma
Length = 1388
Score = 55.8 bits (133), Expect = 2e-07
Identities = 56/244 (22%), Positives = 107/244 (42%), Gaps = 29/244 (11%)
Query: 199 VSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNCFGSYATDLYLPGSDIDCVVRSASG 258
++ I PN ++RN + ++ ++E +P + FGS YLP DID SA
Sbjct: 50 IACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFMFGSVPLKTYLPDGDIDLTAFSA-- 107
Query: 259 DKENRNALYSLASFLKRKQLATQVEVIAKARVPIIKFVEPESK--------IHIDVSFER 310
N+N S A+ ++ + A+ V +++++ E K I +D+SF +
Sbjct: 108 ---NQNLKDSWANLVRDMLEKEEKNENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFNQ 164
Query: 311 TNGLEA---ARVIRGWLEEQPGLRELVLIVKQF-LHARRLNNVHTGGLGGYSIICLVYTF 366
GL + ++ + + ++++K + + R+ H G + Y++ LV
Sbjct: 165 IGGLCTLCFLEEVDHYINQNHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYI 224
Query: 367 LKLHPRVLTGDIDPLENLGVLLIDFFELYGKNFGYDDVGISVSEHEARYIPKNEHPDLSA 426
L +G PLE +L F E + K F + + +S+ +P + PD++A
Sbjct: 225 FYLFNNSFSG---PLE----VLYRFLEFFSK-FDWQNFCLSLWGP----VPVSSLPDVTA 272
Query: 427 GRPR 430
PR
Sbjct: 273 EPPR 276
>Hs22044581 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 1645
Score = 55.5 bits (132), Expect = 3e-07
Identities = 50/189 (26%), Positives = 80/189 (41%), Gaps = 8/189 (4%)
Query: 185 REIADWLTLEIKDFVSYISPNRQEIEQRNQAIAKLKEAVVELWPDSSLNC-FGSYATDLY 243
REI D L K +SP E R Q + L++ + + + + + C FGS
Sbjct: 948 REILD---LVCKRCFDELSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFG 1004
Query: 244 LPGSDID-CVVRSASGDKENRNA---LYSLASFLKRKQLATQVEVIAKARVPIIKFVEPE 299
SD+D C+ + E N + +LA LKR + I A+VPI+KF
Sbjct: 1005 FRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRR 1064
Query: 300 SKIHIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARRLNNVHTGGLGGYSI 359
S + D+S T R++ + P ++ L +K F + + G L Y+
Sbjct: 1065 SGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAY 1124
Query: 360 ICLVYTFLK 368
I +V FL+
Sbjct: 1125 ILMVLYFLQ 1133
>7300817 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 1329
Score = 52.8 bits (125), Expect = 2e-06
Identities = 36/144 (25%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 230 SSLNCFGSYATDLYLPGSDIDCVVRSASGDKENR-NALYSL---ASFLKRKQLATQVEVI 285
SS++ FGS +D+ + C++ + + ++R A+Y L L R + +I
Sbjct: 947 SSISYFGSKCSDMDI------CMLACTNPNIDSRMEAVYHLHVMKELLGRTNMFQDFNLI 1000
Query: 286 AKARVPIIKFVEPESKIHIDVSFERTNGLEAARVIRGWLEEQPGLRELVLIVKQFLHARR 345
+ARVPI++F + K+ +D++F + G+ ++ + + +R + L VKQ+
Sbjct: 1001 -EARVPILRFTDRCHKVEVDINFNNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHN 1059
Query: 346 LNNVHTGGLGGYSIICLVYTFLKL 369
+NN + YS++ +V FL++
Sbjct: 1060 INNAKNMTISSYSLMLMVIHFLQV 1083
>CE02015 [D] KOG2277 S-M checkpoint control protein CID1 and related
nucleotidyltransferases
Length = 1425
Score = 50.8 bits (120), Expect = 7e-06
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 229 DSSLNCFGSYATDLYLPGSDIDCVVRSASGDKENRN-----ALYSLASFLKRKQLATQVE 283
D +L FGS T L + SDID +R GD ++ + S L++ L +V+
Sbjct: 1048 DVTLTTFGSVMTGLSVNCSDIDICLRFGDGDVPPKDLTAKEVIQKTESVLRKCHLVKRVQ 1107
Query: 284 VIAKARVPIIKFVEPESK---IHIDVSFERTNGLEAARVIRGWLEEQPGLR--ELVLIVK 338
I A+VPI+KF S I +D+S+ + +++ + P R +L L VK
Sbjct: 1108 AIVTAKVPIVKFQVKLSNGAIIDVDISYYNILAIYNTALLKEYSLWTPDKRFAKLALFVK 1167
Query: 339 QFLHARRLNNVHTGGLGGYSIICLVYTFLK 368
+ + + G L Y + ++ ++L+
Sbjct: 1168 TWAKNCEIGDASRGSLSSYCHVIMLISYLQ 1197
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,923,617
Number of Sequences: 60738
Number of extensions: 1776183
Number of successful extensions: 6580
Number of sequences better than 1.0e-05: 24
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6526
Number of HSP's gapped (non-prelim): 36
length of query: 684
length of database: 30,389,216
effective HSP length: 113
effective length of query: 571
effective length of database: 23,525,822
effective search space: 13433244362
effective search space used: 13433244362
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)