ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI1977    suspect: LH   L     KOG0011  Replication, recombination and repair                          Nucleotide excision repair factor NEF2, RAD23 component

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI1977 675804 675172 -211 
         (211 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOL111c [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23...   130   1e-30

>YOL111c [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
          Length = 212

 Score =  130 bits (328), Expect = 1e-30
 Identities = 84/219 (38%), Positives = 115/219 (52%), Gaps = 25/219 (11%)

Query: 3   ELDFVGKFLSLAALNEPKLASNYRKPLHEVTNLGVSLPPLRYKYDPXXX--------XXX 54
           E +FV KFL+LA L EPKL  +Y KPL +VTNLGV LP L+YKY                
Sbjct: 9   EHEFVSKFLTLATLTEPKLPKSYTKPLKDVTNLGVPLPTLKYKYKQNRAKKLKLHQDQQG 68

Query: 55  XXXXVVEVTIKSIKAPKFVHSKSFESTDTVGQIKEFLVETEPEIYTTGQIKLLLKGKVLH 114
                V +T+K I+APKF     F  +DT+ QIK+ L+  E   + + +IKLLLKGKVLH
Sbjct: 69  QDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHIS-EIKLLLKGKVLH 127

Query: 115 DTQLVSDLNQDKISLVAMVSKAEKPVETAPLPKPAQEPEPELELMDVDMEDPQLDLSSQT 174
           D   +SDL          V+ A   +     P P    EPE E    +   P    +   
Sbjct: 128 DNLFLSDLK---------VTPANSTITVMIKPNPTISKEPEAE-KSTNSPAP----APPQ 173

Query: 175 DIDLPWDKIRTVLESSLDASTASV--ALGRLQKGWELSK 211
           ++ +PWD I  +L+++ +   A+V   + RLQKGW L+K
Sbjct: 174 ELTVPWDDIEALLKNNFENDQAAVRQVMERLQKGWSLAK 212


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,218,586
Number of Sequences: 60738
Number of extensions: 438942
Number of successful extensions: 1731
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 1
length of query: 211
length of database: 30,389,216
effective HSP length: 102
effective length of query: 109
effective length of database: 24,193,940
effective search space: 2637139460
effective search space used: 2637139460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)