ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2011 good A KOG2837 RNA processing and modification Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2011 687457 686741 -239
(239 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR077w [A] KOG2837 Protein containing a U1-type Zn-finger and i... 176 3e-44
SPBC365.09c [A] KOG2837 Protein containing a U1-type Zn-finger a... 162 5e-40
CE20297 [A] KOG2837 Protein containing a U1-type Zn-finger and i... 143 2e-34
7296288 [A] KOG2837 Protein containing a U1-type Zn-finger and i... 142 3e-34
At1g55460 [A] KOG2837 Protein containing a U1-type Zn-finger and... 138 6e-33
Hs13124883 [A] KOG2837 Protein containing a U1-type Zn-finger an... 133 3e-31
>YOR077w [A] KOG2837 Protein containing a U1-type Zn-finger and implicated
in RNA splicing or processing
Length = 232
Score = 176 bits (445), Expect = 3e-44
Identities = 86/188 (45%), Positives = 128/188 (67%), Gaps = 5/188 (2%)
Query: 5 DVGSASFLNKQMKMRGLQKLRFYCQICQKQCRDENGFKSHSKSPSHLQKLSKVTHKDIEE 64
D SA + +KQ RGLQK R+YCQICQ+QC+D NGF+SH+KSPSHL+K+S+VT +D
Sbjct: 3 DYDSAKYWSKQGARRGLQKTRYYCQICQRQCKDANGFQSHNKSPSHLRKISQVTAEDARR 62
Query: 65 YTVQFEKDFLRLLRLMHGEKKVEANKFYNEFIQDKDHVHMNATRFTSLTRFIQHLSQGGK 124
Y +QFEK FL+LL+ HGEK ++ANK YNE++QD+DHVHMNAT SLT+F+++L + GK
Sbjct: 63 YNIQFEKGFLQLLKQRHGEKWIDANKVYNEYVQDRDHVHMNATMHRSLTQFVRYLGRAGK 122
Query: 125 VRIHGIDELTSDTDPGRFMISYIDSSSPNMIRKKQIESLKQAERSDQE-IKLRLLEKQIE 183
V + + TS+ G +I P+ + + + ++++ +QE I LL++Q+
Sbjct: 123 VDVDMDIDDTSENVEGPLLIRI----HPSSLSSPSEDGMLRSQQEEQEVIAAELLKRQLN 178
Query: 184 KANAEEVK 191
+A + K
Sbjct: 179 RAKRQTEK 186
>SPBC365.09c [A] KOG2837 Protein containing a U1-type Zn-finger and implicated
in RNA splicing or processing
Length = 304
Score = 162 bits (409), Expect = 5e-40
Identities = 85/221 (38%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 1 MVSGDVGSASFLNKQMKMRGLQKLRFYCQICQKQCRDENGFKSHSKSPSHLQKLSKVTH- 59
M + G+ ++ +K +GLQ+LR+YC CQKQ RDENGFK H++S H+++++ +
Sbjct: 1 MGRAEAGTPKAISNALKSKGLQRLRWYCSACQKQMRDENGFKCHTQSEGHIRQMNVIAMN 60
Query: 60 --KDIEEYTVQFEKDFLRLLRLMHGEKKVEANKFYNEFIQDKDHVHMNATRFTSLTRFIQ 117
K I++++ QF +DF+ LLR HGEKK+ N+FY E+I+DK+HVHMNATR+ +L+ F +
Sbjct: 61 PGKRIQDFSNQFLRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCK 120
Query: 118 HLSQGGKVRIHGIDELTSDTDPGRFMISYIDSSSPNMIRKKQIESLKQAERSDQEIKLRL 177
L + G R+ + + G F ISYID + N++R + + ++ E+SD+E +LRL
Sbjct: 121 FLGRQGMCRV-------EENEKG-FFISYIDKNPANILRNEANKKRERQEKSDEEQRLRL 172
Query: 178 LEKQIEKA-----NAEEVKSGQKXXXXXXXXIKANIRDGPI 213
L++QI++A N E+ K G I + + PI
Sbjct: 173 LDEQIKRAYESAQNNEDNKDGSSREQPVLHEIDLSKKGNPI 213
>CE20297 [A] KOG2837 Protein containing a U1-type Zn-finger and implicated
in RNA splicing or processing
Length = 404
Score = 143 bits (360), Expect = 2e-34
Identities = 73/181 (40%), Positives = 121/181 (66%), Gaps = 13/181 (7%)
Query: 7 GSASFLNKQMKMRGLQKLRFYCQICQKQCRDENGFKSHSKSPSHLQKL---SKVTHKDIE 63
GS+ L + K +GLQKL+F+CQ+CQKQCRD NGFK H S +H ++L ++ ++ +
Sbjct: 7 GSSKDLANRTKSKGLQKLKFFCQMCQKQCRDANGFKCHLTSEAHQRQLLLFAENSNSYLR 66
Query: 64 EYTVQFEKDFLRLLRLMHGEKKVEANKFYNEFIQDKDHVHMNATRFTSLTRFIQHLSQGG 123
+++ FEK+F++LLR +G K+V AN+ YN FI+DK HVHMN+T + SLT F+Q+L G
Sbjct: 67 QFSNDFEKNFMQLLRTSYGTKRVRANEVYNAFIKDKGHVHMNSTVWHSLTGFVQYLGSSG 126
Query: 124 KVRIHGIDELTSDTDPGRFMISYIDSSSPNMIRKKQIESLKQAERSDQEIKLRLLEKQIE 183
K +I + D G + I+YID + +IRK++ + +Q E+ D+E +++++ ++
Sbjct: 127 KCKI-------DEGDKG-WYIAYIDQEA--LIRKEEDQRKQQQEKDDEERHMQIMDGMVQ 176
Query: 184 K 184
+
Sbjct: 177 R 177
>7296288 [A] KOG2837 Protein containing a U1-type Zn-finger and implicated
in RNA splicing or processing
Length = 390
Score = 142 bits (359), Expect = 3e-34
Identities = 73/192 (38%), Positives = 120/192 (62%), Gaps = 11/192 (5%)
Query: 1 MVSGDVGSASFLNKQMKMRGLQKLRFYCQICQKQCRDENGFKSHSKSPSHLQKL---SKV 57
M +VG+ +L +MK +GLQKLR+YCQ+C+KQCRDENGFK H+ S SH ++L +
Sbjct: 1 MGRAEVGTPKYLANKMKSKGLQKLRWYCQMCEKQCRDENGFKCHTMSESHQRQLLLFADN 60
Query: 58 THKDIEEYTVQFEKDFLRLLRLMHGEKKVEANKFYNEFIQDKDHVHMNATRFTSLTRFIQ 117
K + ++ +F ++ LLR G K+ ANK Y E+I K+H+HMNATR+ +L+ +++
Sbjct: 61 PGKFLHSFSKEFSDGYMELLRRRFGTKRTSANKIYQEYIAHKEHIHMNATRWLTLSDYVK 120
Query: 118 HLSQGGKVRIHGIDELTSDTDPGRFMISYIDSSSPNMIRKKQIESLKQAERSDQEIKLRL 177
L + G+V + +T+ G F ++YID S M R+ + + ++ E+ D+E
Sbjct: 121 WLGRTGQV-------IADETEKGWF-VTYIDRSPEAMERQAKADRKEKMEKDDEERMADF 172
Query: 178 LEKQIEKANAEE 189
+E+QI+ A A++
Sbjct: 173 IEQQIKNAKAKD 184
>At1g55460 [A] KOG2837 Protein containing a U1-type Zn-finger and implicated
in RNA splicing or processing
Length = 411
Score = 138 bits (348), Expect = 6e-33
Identities = 72/196 (36%), Positives = 119/196 (59%), Gaps = 12/196 (6%)
Query: 1 MVSGDVGSASFLNKQMKMRGLQKLRFYCQICQKQCRDENGFKSHSKSPSH---LQKLSKV 57
M D + + ++K +GLQKLR+YCQ+CQKQCRDENGFK H S SH +Q +
Sbjct: 1 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQVFGQN 60
Query: 58 THKDIEEYTVQFEKDFLRLLRLMHGEKKVEANKFYNEFIQDKDHVHMNATRFTSLTRFIQ 117
+ ++ Y+ +FE+ FL L+R H ++ A YNE+I D+ HVHMN+T + +LT FI+
Sbjct: 61 PTRVVDGYSEEFEQTFLDLMRRSHRFSRIAATVVYNEYINDRHHVHMNSTEWATLTEFIK 120
Query: 118 HLSQGGKVRIHGIDELTSDTDPGRFMISYIDSSSPNMIRKKQIESLKQAERSDQEIKLRL 177
HL + GK ++ + P + I+YID S + +++ +++ +++E + R
Sbjct: 121 HLGKTGKCKV--------EETPKGWFITYIDRDSETLFKERLKNKRVKSDLAEEEKQERE 172
Query: 178 LEKQIEKANAEEVKSG 193
+++QIE+A AE++ G
Sbjct: 173 IQRQIERA-AEKLNGG 187
>Hs13124883 [A] KOG2837 Protein containing a U1-type Zn-finger and implicated
in RNA splicing or processing
Length = 393
Score = 133 bits (334), Expect = 3e-31
Identities = 70/187 (37%), Positives = 111/187 (58%), Gaps = 16/187 (8%)
Query: 6 VGSASFLN-----KQMKMRGLQKLRFYCQICQKQCRDENGFKSHSKSPSHLQKL---SKV 57
+G + FL ++K +GLQKLR+YCQ+CQKQCRDENGFK H S SH ++L S+
Sbjct: 1 MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASEN 60
Query: 58 THKDIEEYTVQFEKDFLRLLRLMHGEKKVEANKFYNEFIQDKDHVHMNATRFTSLTRFIQ 117
+ ++ ++ +F DFL LLR G K+V N YNE+I ++H+HMNAT++ +LT F +
Sbjct: 61 PQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTK 120
Query: 118 HLSQGGKVRIHGIDELTSDTDPGRFMISYIDSSSPNMIRKKQIESLKQAERSDQEIKLRL 177
L + G ++ D P + I YID + R+ ++E K+ + D+E +
Sbjct: 121 WLGREGLCKV--------DETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKF 172
Query: 178 LEKQIEK 184
+E+Q+ +
Sbjct: 173 IEEQVRR 179
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,960,751
Number of Sequences: 60738
Number of extensions: 500450
Number of successful extensions: 2397
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2381
Number of HSP's gapped (non-prelim): 6
length of query: 239
length of database: 30,389,216
effective HSP length: 103
effective length of query: 136
effective length of database: 24,133,202
effective search space: 3282115472
effective search space used: 3282115472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)