ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI2036    suspect: LH   J     KOG0458  Translation, ribosomal structure and biogenesis                Elongation factor 1 alpha

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI2036 694308  694646 113  
         (113 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YKR084c [J] KOG0458 Elongation factor 1 alpha                          84   2e-17

>YKR084c [J] KOG0458 Elongation factor 1 alpha
          Length = 611

 Score = 84.3 bits (207), Expect = 2e-17
 Identities = 35/57 (61%), Positives = 48/57 (83%)

Query: 29 YLNDEEFELMNQLFPLAKEQLADYQGWDNLAVKVAIFDHNFELEPALVDLKRRFKKK 85
          YLND+E++LMN++FP  K QL DYQGWDNL++K+A+FD+NF+LE  L +LK+  KKK
Sbjct: 25 YLNDDEYDLMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLESTLAELKKTLKKK 81


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.330    0.144    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,273,697
Number of Sequences: 60738
Number of extensions: 186440
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 1
length of query: 113
length of database: 30,389,216
effective HSP length: 89
effective length of query: 24
effective length of database: 24,983,534
effective search space: 599604816
effective search space used: 599604816
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)