ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2121 good A KOG1898 RNA processing and modification Splicing factor 3b, subunit 3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2121 722217 726023 1269
(1269 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML049c [A] KOG1898 Splicing factor 3b subunit 3 678 0.0
Hs11034823 [A] KOG1898 Splicing factor 3b subunit 3 290 1e-77
7292001 [A] KOG1898 Splicing factor 3b subunit 3 260 8e-69
CE17155 [A] KOG1898 Splicing factor 3b subunit 3 251 7e-66
SPAPJ698.03c [A] KOG1898 Splicing factor 3b subunit 3 233 1e-60
At3g55220 [L] KOG1897 Damage-specific DNA binding complex subuni... 207 1e-52
At3g55200 [A] KOG1898 Splicing factor 3b subunit 3 207 1e-52
Hs13435359 [L] KOG1897 Damage-specific DNA binding complex subun... 60 2e-08
>YML049c [A] KOG1898 Splicing factor 3b subunit 3
Length = 1361
Score = 678 bits (1749), Expect = 0.0
Identities = 425/1343 (31%), Positives = 718/1343 (52%), Gaps = 107/1343 (7%)
Query: 1 MTQDSEVLLWHTVLQRHRNYVHSCIGDFTLDRSSLATAEADTTSVKGPRSSKKRKELQLC 60
+ +D E+ L+H L++ N+VHSCIG F + KR++ QLC
Sbjct: 52 VAKDDELYLYHLTLKKQTNFVHSCIGHFV-----------------DLEAGSKREQSQLC 94
Query: 61 LATQDCVELYDVSNGTLDALGKWP-IAATILSMTKLNMDRCSH--------TILVLITDS 111
+AT+ +ELYD ++G L + K+ + ATI SM L++ T L L +DS
Sbjct: 95 VATETHLELYDTADGELKLIAKFQNLFATITSMKSLDLPHSGSRAKASNWPTFLALTSDS 154
Query: 112 GNLTFWQFERDSVSGKVYVRTLANEPISRSGIRRFVPQYQMVSDPQSRCVFFSGIERSKM 171
GNL+ Q + G + ++TL N+P++R+ +RR P M DP RC+ S +E++K+
Sbjct: 155 GNLSIVQIIMHA--GALRLKTLVNQPLTRTTLRRVSPISYMEIDPNGRCIILSSVEQNKL 212
Query: 172 CVLADWQRGKLVVGSPIEIQRSDRITLASAACDVSFDNPVNAAIEVESGTNDY--YLSFY 229
C L D+ + KL + SP+EI R +TL A DV+F+NP +E+++ +L FY
Sbjct: 213 CFLVDYAQ-KLRISSPLEIIRPHMVTLDMAVVDVNFNNPCFVTLEIDNAATQLSVHLIFY 271
Query: 230 TMDLGLNTLLLRKEHLLEDKSINFVMQCPNLQQYKIKTRPND---ETDQDSV-NPFVICG 285
++LGLN ++ + ++L+ + S NFV+ P+L +Y I T +D + D D++ NPFV+ G
Sbjct: 272 VLELGLNHIVKKADYLV-NPSANFVLSLPDLSRYNITTSLSDNNYDADYDTLFNPFVVIG 330
Query: 286 YDGYLTLIDLEGFYEVSVQLPVRKTVSSTN----IINGTIHKLKKDFFILMQSNHGDMYK 341
++ ++ + D+ GF+ + V++P R +S + II+G + KLK DFF+L+QSNHGD++K
Sbjct: 331 FENHILVKDMNGFFSLKVEIPKRSITNSRHKNVTIISGIVQKLKNDFFVLLQSNHGDLFK 390
Query: 342 VGIIPD-EETKAPVLEIAYFDTLPTSEDIHIFKSGALFNVSEFGTSYLTQFESLGEDLEK 400
+ + PD + P+++++YFDT+ S +HIFK+G LF +SE ++L QFE LG +
Sbjct: 391 LTVSPDTNDRNRPLVQLSYFDTIQNSHQLHIFKNGYLFALSEMNNNFLFQFEKLGVEKND 450
Query: 401 ----ITSYTPGRRSFIETESTLKNLSILDSLTSLNPLTSFHASNSTPLTILAAANQTENL 456
+TS P + E L+NLSIL +LNP + +PL+I +
Sbjct: 451 FSNVLTSKDPNKSLVFEPSIKLQNLSILSQQLNLNPSIKSQIVSDSPLSIATKHFTNNKI 510
Query: 457 VKLTSAVDFEELISTTLPRIPSKLWTVRIPKN--ETHSLIFLSMETSTTILKIHEGTVED 514
+ LT+AV++ LIST+LP +KLW + P + ++L+F++ T IL+I ++E+
Sbjct: 511 ITLTNAVNYSNLISTSLPPNATKLWLIPDPATTGDNNTLLFITFPKKTMILQIDNESMEE 570
Query: 515 FGGDS---NPFILNKPS-LFVGAMVQRSIIQVTRDCLLQIIEMHDGPYTKKLEWYPPAGV 570
D + F L++ + + M SIIQV L I+ Y+ KL W PPAG+
Sbjct: 571 LTPDEATRSAFKLSQDTTIHTCLMGSHSIIQVCTAELRHIVPTGKSRYSNKLTWVPPAGI 630
Query: 571 GIVTAFCNETQLVVALTNHEICYFEI--IEDSLNELQDRVEMDSTVNSIALLAG-QKSGY 627
IV A ++TQL+++L+N+E+ YF+I DSL EL E+D+ + +A++ Q +
Sbjct: 631 RIVCATSSKTQLIISLSNYELVYFKIDVSSDSLIELTTHPELDTMPSKVAIVQDTQHADL 690
Query: 628 CVLGCEDSSLQILNLQSKHPDFFTICAIQSLISKPHSLLFMRDTS--DLKIHVGMKSGVY 685
+ + ++I++L+ + DF T+ ++Q + K ++ +RD+S L +HVG+++GVY
Sbjct: 691 LAIADNEGMIKIMSLKDQKEDFLTVISLQLVSEKISDMIMVRDSSIGQLNLHVGLENGVY 750
Query: 686 LSSKLNINDGTVFDVRTRFVGTKPVQVNLLXXXXXXXXXXXXXEPGENXXXXXXXXXXXX 745
+ + DG+ D++ RF+G KPV ++ L E E+
Sbjct: 751 MKFHIGDVDGSFTDIKRRFLGLKPVSLSYLREISVSLNNEEEEEEEEDDDDEKEEEEINS 810
Query: 746 XXTP---LVVLNSSISWVTYEIDDKITLRPLKTDEGITLKHINAFITDDIKRNGCCSITS 802
VV +SS +WV+Y + T+R LK ++ + F+ D+ NG CSI+S
Sbjct: 811 SGAKWMSCVVCHSSSTWVSYTWKNVWTIRQLKDQNMLSC---SKFVNADVAINGVCSISS 867
Query: 803 KGQLLIGKLDNFLSWSNWFNEKKYTLVNDELKNAGNXXXXXXXXXXXXXXASEKYEIVGY 862
G+L IG++ NF + NWF+ + ++ E G E +I +
Sbjct: 868 SGRLNIGRVSNFPTLDNWFHVHESSVNKQE---NGGGDESNEEEEDEMEEEMEMLQISTF 924
Query: 863 QSQRILS-DTTDNSLSYVISKTANKETSLSAIRDDKLLATNNGNTVVIIAKEV-FNAVCS 920
+ + ILS S+ ++ + + K+ +S D + L + + + I ++ +
Sbjct: 925 RPRTILSFPNNPKSILFIDNHSGKKQCRISLQIDGECLKFGSSDHLYKILDDIDCVSAAI 984
Query: 921 CNFGTNVKYIVISTESGKFIVIQIRVKNNVL--ETQYIHETMVHSKVNAMVSFGDKLACC 978
+F +++I + + +I V + L + + +H+T + S ++AM+ F + L
Sbjct: 985 IDFTRQADHLIICAGDKRLLTYKILVNKDKLSFDIELLHQTEIISPIHAMLKFKNFLLTA 1044
Query: 979 ILGNVVLFGLGKKQLLRKSITEMPPYITQVTALDQWDGTMLAVGDIRESVTIFKYDIDNN 1038
+ +VL+GLGKKQLLR+S+T+ P IT++ ++ QW+ LAVGDI ESVT+F +D N
Sbjct: 1045 MGSTIVLYGLGKKQLLRRSVTQTPVSITKIVSMHQWNYERLAVGDIHESVTLFIWDPAGN 1104
Query: 1039 SFIGVADDIVKRHVTTVKFIDVSSVIGGDRFGNCWVLR---------------------V 1077
FI DD VKRHVT +KF+D ++VIG DR+GN W LR +
Sbjct: 1105 VFIPYVDDSVKRHVTVLKFLDEATVIGADRYGNAWTLRSPPECEKIMSNHDPSELSNGAI 1164
Query: 1078 NYESDT----RVASNIKACQYTLETLCHMYMNDTPMKFEIVNHMNMSDRPAILWIGLQGT 1133
Y D + N C++ + L H ++ND F I++ ++ SDRP +++GLQGT
Sbjct: 1165 KYPLDVITLQQKLPNTYDCKFKFQLLNHFFVNDIITDFHILDSLSNSDRPGCIYMGLQGT 1224
Query: 1134 IGCFVPLITRKEQQLYQSFQSTYAELDVLHFQD-------NNKPEEVDLEETEGALDEAY 1186
+GCF+PL+++ + + ++ AE D + D NN +E D EE+ + +
Sbjct: 1225 VGCFIPLLSKGNVFMMGNIENIMAEADDTFYLDYESRKKNNNMRKEDDEEESGSVVLQGR 1284
Query: 1187 HTTKNTDHQDYVEGVISRVGRDFLSYRSSYAPSKNIIDGETLEQLTTYLPSDQRWIASKM 1246
H + + EG S +GRD YRS YAP + +IDG+ E ++Q ++A +
Sbjct: 1285 H---GIEDEIICEGSCSILGRDHQEYRSYYAPVRKVIDGDLCENFLRLSLNEQEFLAKNL 1341
Query: 1247 KHADSGKLDIFNKYINEMRTNYV 1269
K S +++ + INE+RTNY+
Sbjct: 1342 K---SVQVEDIIQTINEVRTNYM 1361
>Hs11034823 [A] KOG1898 Splicing factor 3b subunit 3
Length = 1217
Score = 290 bits (742), Expect = 1e-77
Identities = 307/1324 (23%), Positives = 557/1324 (41%), Gaps = 204/1324 (15%)
Query: 34 SLATAEADTTSVKGPRSSKKRKELQLCLATQDCVELY--DVSNGTLDALGKWPIAATILS 91
+L A + ++ G S K++E+ ++ +EL D + G + L + I S
Sbjct: 7 TLQRATGISFAIHGNFSGTKQQEI--VVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRS 64
Query: 92 MTKLNMDRCSHTILVLITDSGNLTFWQFERDSVSGKVYVRTLANEPISRSGIRRFVPQYQ 151
+ + + +V+ +DSG + +++ K + E +SG RR VP
Sbjct: 65 LMAFRLTGGTKDYIVVGSDSGRIVILEYQ----PSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 152 MVSDPQSRCVFFSGIERSKMCVLADWQRG-KLVVGSPIEIQRSDRITLASAACDVSFDNP 210
+ DP+ R V S IE+ K+ + + +L + SP+E +++ + DV F+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 211 VNAAIEV--ESGTND----------YYLSFYTMDLGLNTLLLRKEHLLEDKSINFVMQCP 258
+ A +E+ E ND L+FY +DLGLN ++ + LE+ NF++ P
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHG-NFLITVP 239
Query: 259 NLQQYKIKTRPNDETDQDSVNPFVICGYDGYLTLIDLEGFYEVSVQLPVRKT-----VSS 313
D + +IC + Y+T + ++ +P R+
Sbjct: 240 G--------------GSDGPSGVLICS-ENYITYKNFGDQPDIRCPIPRRRNDLDDPERG 284
Query: 314 TNIINGTIHKLKKDFFILMQSNHGDMYKVGIIPDEETKAPVLEIAYFDTLPTSEDIHIFK 373
+ HK K FF L Q+ GD++K+ + DE+ + + YFDT+P + + + K
Sbjct: 285 MIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEI-RLKYFDTVPVAAAMCVLK 343
Query: 374 SGALFNVSEFGTSYLTQFESLGEDLE--KITSYTPGRR--SFIETESTLKNLSILDSLTS 429
+G LF SEFG YL Q LG+D E + +S P +F LKNL ++D L S
Sbjct: 344 TGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDS 403
Query: 430 LNPLTSFH----ASNSTP-LTILAAANQTENLVKLTSAVDFEELISTTLPRIPSKLWTVR 484
L+P+ A+ TP L + +L L ++ E+ + LP P+ +WTVR
Sbjct: 404 LSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVR 463
Query: 485 IP-KNETHSLIFLSMETSTTILKIHEGTVEDFGGDSNPFILNKPSLFVGAMVQRSIIQVT 543
++E + I +S +T +L I E TVE+ + F+ P+L + +++QV
Sbjct: 464 RHIEDEFDAYIIVSFVNATLVLSIGE-TVEEV--TDSGFLGTTPTLSCSLLGDDALVQVY 520
Query: 544 RDCLLQIIEMHDGPYTKKLEWYPPAGVGIVTAFCNETQLVVALTNHEICYFEI-IEDSLN 602
D + H + EW P IV N+ Q+V+ALT E+ YFE+ LN
Sbjct: 521 PDGI-----RHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLN 575
Query: 603 ELQDRVEMDSTVNSIALL----AGQKSGYCVLGCEDSSLQILNLQSKHPDFFTICAIQSL 658
E +R EM + V ++L Q+S + +G D++++I++L D ++Q+L
Sbjct: 576 EYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPS--DCLQPLSMQAL 633
Query: 659 ISKPHSLLFMR--------------DTSDLKIHVGMKSGVYLSSKLNINDGTVFDVRTRF 704
++P SL + L +++G+++GV L + L+ G + D RTR+
Sbjct: 634 PAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRY 693
Query: 705 VGTKPVQVNLLXXXXXXXXXXXXXEPGENXXXXXXXXXXXXXXTPLVVLNSSISWVTYEI 764
+G++PV++ V+ SS SW++Y
Sbjct: 694 LGSRPVKL----------------------------FRVRMQGQEAVLAMSSRSWLSYSY 725
Query: 765 DDKITLRPLKTDEGITLKHINAFITDDIKRNGCCSITSKGQLL----IGKLDNFLSWSNW 820
+ L PL + TL+ + F ++ T+ ++L +G + N +++
Sbjct: 726 QSRFHLTPLSYE---TLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQ 782
Query: 821 FNEKKYTLVNDE-----LKNAGNXXXXXXXXXXXXXXASEKYEIVGYQSQRILSDTTDNS 875
+ +K+ + + ++ N A E E G + + ++
Sbjct: 783 YTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAAAF 842
Query: 876 LSYVISKT------ANKETSLSAIRDDKLLATNNGNTVVIIAKEVFNAVCSCNFGTN--- 926
L+ + ++ A S IR + N + V + E +V C F
Sbjct: 843 LNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGED 902
Query: 927 -------VKYIVISTES--GKFIVIQIRVKNNVLETQYIHETMVHSKVNAMVSFGDKLAC 977
K ++++ S G F V ++ NN + +++H+T V A+ F ++
Sbjct: 903 WYVLVGVAKDLILNPRSVAGGF-VYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLI 961
Query: 978 CILGNVVLFGLGKKQLLRKSITE-MPPYITQVTALDQWDGTMLAVGDIRESVTIFKYDID 1036
+ + ++ LGKK+LLRK + + YI+ + + G + V D++ES +Y +
Sbjct: 962 GVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTI----GHRVIVSDVQESFIWVRYKRN 1017
Query: 1037 NNSFIGVADDIVKRHVTTVKFIDVSSVIGGDRFGNCWVLRV----NYESDTRVASN---- 1088
N I ADD R VTT +D +V G D+FGN V+R+ N E D N
Sbjct: 1018 ENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALW 1077
Query: 1089 ----IKACQYTLETLCHMYMNDTPMKFEIVNHMNMSDRPAILWIGLQGTIGCFVPLITRK 1144
+ E + + ++ +T + + + ++++ L G IG VP + +
Sbjct: 1078 DRGLLNGASQKAEVIMNYHVGETVLSLQKTT-LIPGGSESLVYTTLSGGIGILVPFTSHE 1136
Query: 1145 EQQLYQSFQSTYAELDVLHFQDNNKPEEVDLEETEGALDEAYHTTKNTDHQDYVEGVISR 1204
+ +Q + +H + + P
Sbjct: 1137 DHDFFQHVE--------MHLRSEHPP---------------------------------L 1155
Query: 1205 VGRDFLSYRSSYAPSKNIIDGETLEQLTTYLPSDQRWIASKMKHADSGKLDIFNKYINEM 1264
GRD LS+RS Y P KN+IDG+ EQ + P+ Q+ ++ ++ +K + ++
Sbjct: 1156 CGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPE----VSKKLEDI 1211
Query: 1265 RTNY 1268
RT Y
Sbjct: 1212 RTRY 1215
>7292001 [A] KOG1898 Splicing factor 3b subunit 3
Length = 1169
Score = 260 bits (665), Expect = 8e-69
Identities = 270/1233 (21%), Positives = 514/1233 (40%), Gaps = 171/1233 (13%)
Query: 34 SLATAEADTTSVKGPRSSKKRKELQLCLATQDCVELYDVSNGTLDALGKWPIAATILSMT 93
+L A T +V G S K++E+ L + D + G + L I + ++
Sbjct: 7 TLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLELLRPDSNTGKVHTLLSTEIFGCVRALM 66
Query: 94 KLNMDRCSHTILVLITDSGNLTFWQFERDSVSGKVYVRTLANEPISRSGIRRFVPQYQMV 153
+ + +V+ +DSG + ++ K + + E +SG RR VP
Sbjct: 67 AFRLTGGTKDYIVVGSDSGRIVILEYN----PSKNALEKVHQETFGKSGCRRIVPGQYFA 122
Query: 154 SDPQSRCVFFSGIERSKMCVLADWQ-RGKLVVGSPIEIQRSDRITLASAACDVSFDNPVN 212
DP+ R V +E+ K+ + + + +L + SP+E +S+ +T DV FDNP+
Sbjct: 123 IDPKGRAVMIGAVEKQKLAYIMNRDTQARLTISSPLEAHKSNTLTYHMVGVDVGFDNPMF 182
Query: 213 AAIEVESGTNDY------------YLSFYTMDLGLNTLLLRKEHLLEDKSINFVMQCPNL 260
A +E++ D L+FY +DLGLN ++ + LE+ + NF++ P
Sbjct: 183 ACLEIDYEEADMDPSGDAAQRTQQTLTFYELDLGLNHVVRKYSEPLEEHA-NFLVSVPG- 240
Query: 261 QQYKIKTRPNDETDQDSVNPFVICGYDGYLTLIDLEGFYEVSVQLPVRKT-----VSSTN 315
D + +IC + YLT +L +++ +P R+
Sbjct: 241 -------------GNDGPSGVLICS-ENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMI 286
Query: 316 IINGTIHKLKKDFFILMQSNHGDMYKVGIIPDEETKAPVLEIAYFDTLPTSEDIHIFKSG 375
I H+ K +F L+Q+ GD++K+ + D++ + + ++ YFDT+P + + + K+G
Sbjct: 287 FICSATHRTKSMYFFLLQTEQGDIFKITLETDDDVVSEI-KLKYFDTVPPATAMCVLKTG 345
Query: 376 ALFNVSEFGTSYLTQFESLGEDLE--KITSYTP--GRRSFIETESTLKNLSILDSLTSLN 431
LF SEFG YL Q LG+D + + +S P +F LKNL ++D L S
Sbjct: 346 FLFVASEFGNHYLYQIAHLGDDDDEPEFSSAMPLEEGETFFFAPRALKNLVLVDELPSFA 405
Query: 432 PLTSFH----ASNSTP-LTILAAANQTENLVKLTSAVDFEELISTTLPRIPSKLWTV-RI 485
P+ + A+ TP L +L L L ++ E+ + LP P+ +WTV +
Sbjct: 406 PIITSQVADLANEDTPQLYVLCGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKR 465
Query: 486 PKNETHSLIFLSMETSTTILKIHEGTVEDFGGDSNPFILNKPSLFVGAMVQRSIIQVTRD 545
+E + I +S +T +L I E TVE+ + F+ P+L A+ +++QV D
Sbjct: 466 ADDEFDAYIIVSFVNATLVLSIGE-TVEEV--TDSGFLGTTPTLCCAALGDDALVQVYPD 522
Query: 546 CLLQIIEMHDGPYTKKLEWYPPAGVGIVTAFCNETQLVVALTNHEICYFEI-IEDSLNEL 604
+ H + EW P I N+ Q+V+ L+ E+ YFE+ LNE
Sbjct: 523 GI-----RHIRSDKRVNEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDPTGELNEY 577
Query: 605 QDRVEMDSTVNSIAL----LAGQKSGYCVLGCEDSSLQILNLQSKHPDFFTICAIQSLIS 660
+R EM + + +AL Q+S + +G D++++IL+L + T C++Q+L S
Sbjct: 578 TERSEMPAEIMCMALGTVPEGEQRSWFLAVGLADNTVRILSLDPN--NCLTPCSMQALPS 635
Query: 661 KPHSLLFM-----------------------RDTSDLKIHVGMKSGVYLSSKLNINDGTV 697
SL + + + +++G+ +GV L + L+ G +
Sbjct: 636 PAESLCLVEMGHTESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLDPVSGDL 695
Query: 698 FDVRTRFVGTKPVQVNLLXXXXXXXXXXXXXEPGENXXXXXXXXXXXXXXTPLVVLNSSI 757
D RTR++G++PV++ + V+ SS
Sbjct: 696 ADTRTRYLGSRPVKL----------------------------FRIKMQGSEAVLAMSSR 727
Query: 758 SWVTYEIDDKITLRPLKTDEGITLKHINAFITDDIKRNGCCSITSKGQLL----IGKLDN 813
+W++Y ++ L PL + TL++ + F ++ T+ ++L +G + N
Sbjct: 728 TWLSYYHQNRFHLTPLSYE---TLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFN 784
Query: 814 FLSWSNWFNEKKYTLVNDE-----LKNAGNXXXXXXXXXXXXXXASEKYEIVGYQSQRIL 868
+++ + + + + D + N A E G + + +
Sbjct: 785 QVAFPLQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDEERELA 844
Query: 869 SDTTDNSLSYVISKT------------ANKETSLSAIRDDKLLAT--NNGNTVVIIAKEV 914
+ + ++ V+ + A++ L A+ + + ++ +A
Sbjct: 845 REMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSVPLTQNEAIMSMAMLK 904
Query: 915 FNAVCSCNFGTNV---KYIVISTESGKFIVIQI-RVKNNVLETQYIHETMVHSKVNAMVS 970
F+ + V K + ++ + I I ++ +++H T + A+
Sbjct: 905 FSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYKIDPTCSSLEFMHRTDIDEIPGALCG 964
Query: 971 FGDKLACCILGNVVLFGLGKKQLLRKSITEMPPY-ITQVTALDQWDGTMLAVGDIRESVT 1029
F +L + ++ GKK++LRK + PY I + A+ G + V D++ESV
Sbjct: 965 FQGRLLAGCGRMLRIYDFGKKKMLRKCENKHIPYQIVNIQAM----GHRVYVSDVQESVF 1020
Query: 1030 IFKYDIDNNSFIGVADDIVKRHVTTVKFIDVSSVIGGDRFGNCWVLRVNYESDTRVASN- 1088
+Y N I ADD R VT +D ++ D+FGN + R+ + V +
Sbjct: 1021 FIRYRRAENQLIIFADDTHPRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDP 1080
Query: 1089 -----------IKACQYTLETLCHMYMNDTPMKFEIVNHMNMSDRPAILWIGLQGTIGCF 1137
+ E +C ++ + M + + A+++ L GT+G F
Sbjct: 1081 TGTKSLWDRGLLSGASQKSENICSFHVGEIIMSLQKAT-LIPGGSEALIYATLSGTVGAF 1139
Query: 1138 VPLITRKEQQLYQSFQSTYAELDVLHFQDNNKP 1170
VP +R++ +Q + +H ++ N P
Sbjct: 1140 VPFTSREDYDFFQHLE--------MHMRNENPP 1164
>CE17155 [A] KOG1898 Splicing factor 3b subunit 3
Length = 1220
Score = 251 bits (640), Expect = 7e-66
Identities = 292/1291 (22%), Positives = 524/1291 (39%), Gaps = 210/1291 (16%)
Query: 71 DVSNGTLDALGKWPIAATILSMTKLNMDRCSHTILVLITDSGNLTFWQFERDSVSGKVYV 130
D G + + I + S+ + + + + +DSG + Q+ + K
Sbjct: 45 DTVTGKIKVMCHQDIFGIVRSLLAFRLTAGTRDFIAVGSDSGRIVILQYNAE----KTCF 100
Query: 131 RTLANEPISRSGIRRFVPQYQMVSDPQSRCVFFSGIERSKMCVLADWQ-RGKLVVGSPIE 189
L E ++G RR VP + +V DP+ R + +ER K+ + + L + SP+E
Sbjct: 101 ERLHQETFGKTGCRRIVPGHFLVGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSPLE 160
Query: 190 IQRSDRITLASAACDVSFDNPVNAAIEV--ESGTND----------YYLSFYTMDLGLNT 237
+ + A DV F+NP A +E E ND L+FY +DLGLN
Sbjct: 161 AHKHHTLCYAMVGIDVGFENPTFACLEFDYEDADNDPTGEAAKRTQQTLTFYELDLGLNH 220
Query: 238 LLLRKEHLLEDKSINFVMQCPNLQQYKIKTRPNDETDQDSVNPFVICGYDGYLTLIDLEG 297
++ + L D N ++ P D + ++C + YL +L
Sbjct: 221 VVRKYAEPLNDPG-NLLIAVPG--------------GNDGPSGVIVC-CENYLVYKNLGD 264
Query: 298 FYEVSVQLPVRKT----VSSTNIINGTI-HKLKKDFFILMQSNHGDMYKVGIIPDEETKA 352
++ +P R+ T +I T HK K +F L+Q+ +GD++KV + DE+ +
Sbjct: 265 QPDIRCPIPRRRNELDDADRTMLIIATATHKTKNMYFFLVQAENGDIFKVTLETDEDLVS 324
Query: 353 PVLEIAYFDTLPTSEDIHIFKSGALFNVSEFGTSYLTQFESLGE----DLEKITSYTPGR 408
+++ YFDT+P + + I KSG LF +EFG L Q SLGE + +
Sbjct: 325 E-MKLKYFDTVPPANALCILKSGFLFVAAEFGNHELYQIASLGEGDDDEFSSAMGFGEND 383
Query: 409 RSFIETESTLKNLSILDSLTSLNPLTS-----FHASNSTPLTILAAANQTENLVKLTSAV 463
+F E LK+L +DS+ SL+PLT ++ + L +L L + +
Sbjct: 384 AAFFEPHE-LKSLIPIDSMDSLSPLTDAVIGDIAREDAAQIYSLVGRGARSSLKVLRNGL 442
Query: 464 DFEELISTTLPRIPSKLWTVRIP-KNETHSLIFLSMETSTTILKIHEGTVEDFGGDSNPF 522
+ E+ + LP P+ +WTV+ +++ S I +S +T L I + TVE+ + F
Sbjct: 443 EISEMAVSDLPGNPNAVWTVKKNIEDQYDSYIVVSFVNATLALTIGD-TVEE--ASDSGF 499
Query: 523 ILNKPSLFVGAMVQRSIIQVTRDCLLQIIEMHDGPYTKKL-EWYPPAGVGIVTAFCNETQ 581
+ P++ + S++Q+ + + I K++ EW P IV N Q
Sbjct: 500 LPTTPTIGCAMIGDDSLVQIYSEGIRHIRA------DKRINEWKAPPRRQIVKCAVNRRQ 553
Query: 582 LVVALTNHEICYFEI-IEDSLNELQDRVEMDSTVNSIA---LLAGQ-KSGYCVLGCEDSS 636
+ VALT E+ YFE+ + +LNE +R ++ + + + G+ S + LG D++
Sbjct: 554 VAVALTGGELVYFELDLNGTLNEFTERKLFNADIACMTFSEISEGELNSRFLALGTVDNA 613
Query: 637 LQILNLQSKHPDFFTICAIQSLISKPHSLLFM-------RDTSDLKIHVGMKSGVYLSSK 689
++I++L D + QSL P S+L + + + + +++G+++G +
Sbjct: 614 VRIISLDPN--DMLMPLSTQSLPCPPESILLIDTPNEDGKGVAAVHLNIGLQNGCLFRNT 671
Query: 690 LNINDGTVFDVRTRFVGTKPVQVNLLXXXXXXXXXXXXXEPGENXXXXXXXXXXXXXXTP 749
++ G + D RTR++GT+PV++ +
Sbjct: 672 VDNVTGAIMDTRTRYLGTRPVKLFKVQCQGRSA--------------------------- 704
Query: 750 LVVLNSSISWVTYEIDDKITLRPLKTDEGITLKHINAFITDDIKRNGCCSITSKGQLLI- 808
++ SS SW+ Y + L PL L++ +F ++ G +I++ +I
Sbjct: 705 -ILCTSSRSWLLYHFQRRFHLTPLSY---ANLEYAASFCSNQCSE-GIVAISASTLRIIA 759
Query: 809 ----GKLDNFLSWSNWFNEKK-------------------YTLVNDELKNAGNXXXXXXX 845
G N S+ + ++ YT V +K
Sbjct: 760 AEKLGVAFNVQSFEHKMTPRRVAVHPSMPCLIVIETDHASYTEVTKNIKR-NQMAADVEA 818
Query: 846 XXXXXXXASEKYEIVGYQSQRILSDTTDNSLSYVISKTANKETSLSAIRDDKLL-----A 900
A EI +R L + + K A+ + +SA DKL
Sbjct: 819 MASDETEAQLAQEIATNLRERRLDERVYGAPRAARGKWASAISLISATSGDKLSYFELPQ 878
Query: 901 TNNGNTVVII--AKEVFNAV----CSCNFGTNVKYIV---ISTESGKFIVIQIRVKNNVL 951
N V ++ +K A+ C N NV I S + V + N
Sbjct: 879 DENAKCVALVQFSKHPNEAMVLVGCGVNEVLNVHDIDPNDTSIRPTRGCVYTFHLSANGD 938
Query: 952 ETQYIHETMVHSKVNAMVSFGDKLACCILGNVVLFGLGKKQLLRKSITE-MPPYITQVTA 1010
++H T V A+ F + ++ +G+K+LL K + P I +
Sbjct: 939 RFDFLHRTETPLPVGAIHDFRGMALVGFGRFLRMYDIGQKKLLAKCENKNFPVSIVNI-- 996
Query: 1011 LDQWDGTMLAVGDIRESVTIFKYDIDNNSFIGVADDIVKRHVTTVKFIDVSSVIGGDRFG 1070
Q G + V D +ESV +Y +N + ADD R+VT V +D +V D+FG
Sbjct: 997 --QSTGQRIIVSDSQESVHFLRYRKGDNQLVVFADDTTPRYVTCVCVLDYHTVAVADKFG 1054
Query: 1071 NCWVLRV------NYESDTRVASNI------KACQYTLETLCHMYMNDTPMKFEIVNHMN 1118
N V+R+ + + D V+ ++ +E + + ++ DT + + M
Sbjct: 1055 NLAVVRLPERVNEDVQDDPTVSKSVWDRGWLNGASQKVELVSNFFIGDTITSLQKTSLMP 1114
Query: 1119 MSDRPAILWIGLQGTIGCFVPLITRKEQQLYQSFQSTYAELDVLHFQDNNKPEEVDLEET 1178
++ A+++ + G IGC V +++ E + + + +H + P
Sbjct: 1115 GANE-ALVYTTIGGAIGCLVSFMSKDEVDFFTNLE--------MHVRSEYPP-------- 1157
Query: 1179 EGALDEAYHTTKNTDHQDYVEGVISRVGRDFLSYRSSYAPSKNIIDGETLEQLTTYLPSD 1238
GRD L+YRS YAP K++IDG+ EQ +
Sbjct: 1158 -------------------------LCGRDHLAYRSYYAPCKSVIDGDICEQFSLMDTQK 1192
Query: 1239 QRWIASKMKHADSGK-LDIFNKYINEMRTNY 1268
Q+ +A ++ GK + +K + ++RT Y
Sbjct: 1193 QKDVAEEL-----GKTVSEISKKLEDIRTRY 1218
>SPAPJ698.03c [A] KOG1898 Splicing factor 3b subunit 3
Length = 1206
Score = 233 bits (595), Expect = 1e-60
Identities = 190/729 (26%), Positives = 348/729 (47%), Gaps = 104/729 (14%)
Query: 50 SSKKRKELQLCLATQDCVELYDVSNGTLDALGKWPIAATILSMTKLNMDRCSHTILVLIT 109
S KK +E+ + ++ + D ++G ++ + I ++ L + LV+ +
Sbjct: 29 SGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCFGIIRNVAPLRLTGFKRDYLVVTS 88
Query: 110 DSGNLTFWQFERDSVSGKVYVRTLANEPISRSGIRRFVPQYQMVSDPQSRCVFFSGIERS 169
DSG +T ++ + K + + E +SGIRR VP + D + R + +E++
Sbjct: 89 DSGRITILEYNVE----KNKLVPIYQETFGKSGIRRVVPGEYLAIDAKGRAAMIASVEKN 144
Query: 170 KMC-VLADWQRGKLVVGSPIEIQRSDRITLASAACDVSFDNPVNAAIEVESGTNDY---- 224
K+ VL L + SP+E +++ I D + NP+ AA+EV+ D+
Sbjct: 145 KLVYVLNRDSEANLTISSPLEAHKANNICFHLIGLDTGYANPIFAALEVDYSEIDHDSTR 204
Query: 225 --------YLSFYTMDLGLNTLLLRKEHLLEDKSINFVMQCPNLQQYKIKTRPNDETDQD 276
LS+Y +DLGLN ++ R +++ S Y + P D
Sbjct: 205 EAFTSSEKVLSYYELDLGLNHVVKRWSKVVDRNS------------YMLIPVPGGN-DGP 251
Query: 277 SVNPFVICGYDGYLTLIDLEGFYEVSVQLPVRKTVSSTN-------------------II 317
S + G+ Y L + F+++ + +R+ +S N I+
Sbjct: 252 SGTLVISNGWISYRHL--QKAFHQIPI---LRRQAASANAISTPWNQVNSNSANDGPLIV 306
Query: 318 NGTIHKLKKDFFILMQSNHGDMYKVGIIPDEETKAPVLEIAYFDTLPTSEDIHIFKSGAL 377
+ +HK+K FF L+Q+ GD+ K+ I D + L + YFDT+P + ++I K+G L
Sbjct: 307 SAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILKTGFL 366
Query: 378 FNVSEFGTSYLTQFESLG---EDLEKITSYTPGRRSFIETEST------LKNLSILDSLT 428
F +EFG L QFE+LG ++LE + + + + T++ L+NLS+++ +
Sbjct: 367 FVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEEIP 426
Query: 429 SLNPLTSF------HASNSTPLTILAAANQTENLVKLTSAVDFEELISTTLPRIPSKLWT 482
SL LT + + L + +L +L ++ E++++ LP P +WT
Sbjct: 427 SLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGAPIAIWT 486
Query: 483 VRIPKNETH-SLIFLSMETSTTILKIHEGTVEDFGGDSNPFILNKPSLFVGAMVQRSIIQ 541
+++ + + + S I LS T +L I E TVE+ S F+ ++ + Q
Sbjct: 487 LKLNQTDVYDSYIILSFTNGTLVLSIGE-TVEEI----------SDSGFLSSVSTLNARQ 535
Query: 542 VTRDCLLQIIE---MHDGPYTKKLEWYPPAGVGIVTAFCNETQLVVALTNHEICYFEIIE 598
+ RD L+QI + + EW P V +V + N+ Q+VVAL+N E+ YFE+ +
Sbjct: 536 MGRDSLVQIHPKGIRYIRANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSD 595
Query: 599 D----SLNELQDRVEMDSTVNSIAL----LAGQKSGYCVLGCEDSSLQILNLQSKHPDFF 650
D LNE Q+R + + V S+AL ++S + L C+D+++++L+L D +
Sbjct: 596 DVEGGQLNEYQERKTLTANVTSLALGPVQEGSRRSNFMCLACDDATVRVLSL-----DLY 650
Query: 651 TI---CAIQSLISKPHSL----LFMRDTSDLKIHVGMKSGVYLSSKLNINDGTVFDVRTR 703
T ++Q+L S +SL + + S L +H+G+ +GVYL + +++ G + D RTR
Sbjct: 651 TTLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTR 710
Query: 704 FVGTKPVQV 712
F+G + V++
Sbjct: 711 FLGPRAVKI 719
Score = 99.4 bits (246), Expect = 3e-20
Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 61/335 (18%)
Query: 925 TNVKYIVISTESGKFIVIQIRVKNNVLETQYIHETMVHSKVNAMVSFGDKLACCILGNVV 984
TN+ + G F V + + LE I T + A+ F ++ + +
Sbjct: 901 TNMDLECRTCSHGNFRVYRFHDEGKKLEL--ISHTEIDGIPMALTPFQGRMLAGVGRFLR 958
Query: 985 LFGLGKKQLLRKS-ITEMPPYITQVTALDQWDGTMLAVGDIRESVTIFKYDIDNNSFIGV 1043
++ LG K++LRK ++ +P +IT +T + + V D + SV Y ++N +
Sbjct: 959 IYDLGNKKMLRKGELSAVPLFITHITV----QASRIVVADSQYSVRFVVYKPEDNHLLTF 1014
Query: 1044 ADDIVKRHVTTVKFIDVSSVIGGDRFGNCWVLR----VNYESDTRVASN--------IKA 1091
ADD + R TT +D ++ GGD+FGN W+LR V+ +D + + + +
Sbjct: 1015 ADDTIHRWTTTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNS 1074
Query: 1092 CQYTLETLCHMYMNDTPMKFEIVNHMNMSDRPAILWIGLQGTIGCFVPLITRKEQQLYQS 1151
+ L+ + H + ND P + V + R +LW GL GT+G F P I +++ + +Q
Sbjct: 1075 TPHKLDLMAHFFTNDIPTSLQKVQLVE-GAREVLLWTGLLGTVGVFTPFINQEDVRFFQ- 1132
Query: 1152 FQSTYAELDVLHFQDNNKPEEVDLEETEGALDEAYHTTKNTDHQDYVEGVISRVGRDFLS 1211
+L+ L ++ GRD L+
Sbjct: 1133 ------QLEFLLRKE----------------------------------CPPLAGRDHLA 1152
Query: 1212 YRSSYAPSKNIIDGETLEQLTTYLPSDQRWIASKM 1246
YRS YAP K +IDG+ E + Q IA+++
Sbjct: 1153 YRSYYAPVKCVIDGDLCEMYYSLPHPVQEMIANEL 1187
>At3g55220 [L] KOG1897 Damage-specific DNA binding complex subunit DDB1
Length = 1214
Score = 207 bits (526), Expect = 1e-52
Identities = 189/690 (27%), Positives = 319/690 (45%), Gaps = 96/690 (13%)
Query: 74 NGTLDALGKWPIAATILSMTKLNMDRCSHTILVLITDSGNLTFWQFERD-SVSGKVYVRT 132
NG + + + I S+ + + +V+ +DSG + ++ ++ +V KV+
Sbjct: 46 NGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVH--- 102
Query: 133 LANEPISRSGIRRFVPQYQMVSDPQSRCVFFSGIERSKMC-VLADWQRGKLVVGSPIEIQ 191
E +SG RR VP + DP+ R V E+ K+ VL +L + SP+E
Sbjct: 103 --QETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAH 160
Query: 192 RSDRITLASAACDVSFDNPVNAAIEVESGTNDY------------YLSFYTMDLGLNTLL 239
+S I + D FDNP+ AAIE++ D +L+FY +DLGLN +
Sbjct: 161 KSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVS 220
Query: 240 LRKEHLLEDKSINFVMQCPNLQQYKIKTRPNDETDQDSVNPFVICGYDGYLTLIDLEGFY 299
RK D N ++ P D + ++C + ++ ++ +G
Sbjct: 221 -RKWSNPVDNGANMLVTVPG--------------GADGPSGVLVCA-ENFVIYMN-QGHP 263
Query: 300 EVSVQLPVRKTVSSTN---IINGTIHKLKKDFFILMQSNHGDMYKVGIIPDEETKAPVLE 356
+V +P R + + +++ +HK K FF L+Q+ +GD++KV + + + + L+
Sbjct: 264 DVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSE-LK 322
Query: 357 IAYFDTLPTSEDIHIFKSGALFNVSEFGTSYLTQFESLGE--DLEKITSYTPGRRSFIET 414
+ YFDT+P + I + K G LF+ SEFG L QF+++GE D+E +S + +ET
Sbjct: 323 VKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSS------NLMET 376
Query: 415 ES----------TLKNLSILDSLTSLNPLTSFHASN----STP-LTILAAANQTENLVKL 459
E LKNL +D + SL PL N TP + L +L L
Sbjct: 377 EEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRIL 436
Query: 460 TSAVDFEELISTTLPRIPSKLWTV-RIPKNETHSLIFLSMETSTTILKIHEGTVEDFGGD 518
+ E+ + LP PS +WTV + +E + I +S +T +L I E E +
Sbjct: 437 RPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEE---VN 493
Query: 519 SNPFILNKPSLFVGAMVQRSIIQVTRDCLLQIIEMHDGPYTKKLEWYPPAGVGIVTAFCN 578
+ F+ PSL V + S++QV + + I E DG EW P IV N
Sbjct: 494 DSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIRE--DGRIN---EWRTPGKRSIVKVGYN 548
Query: 579 ETQLVVALTNHEICYFEIIEDSLNELQDRVEMDSTVNSIALL-------AGQKSGYCVLG 631
Q+V+AL+ E+ YFE D +L + VE +A L ++S + +G
Sbjct: 549 RLQVVIALSGGELIYFE--ADMTGQLME-VEKHEMSGDVACLDIAPVPEGRKRSRFLAVG 605
Query: 632 CEDSSLQILNLQSKHPDFFTICAIQSLISKPHSLLFMR------------DTSDLKIHVG 679
D++++IL+L D I ++QS+ S P SLLF+ ++L ++ G
Sbjct: 606 SYDNTVRILSLDP--DDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSG 663
Query: 680 MKSGVYLSSKLNINDGTVFDVRTRFVGTKP 709
+++GV + +++ G + D R+RF+G KP
Sbjct: 664 LQNGVLFRTVVDMVTGQLSDSRSRFLGLKP 693
Score = 77.8 bits (190), Expect = 1e-13
Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 67/310 (21%)
Query: 954 QYIHETMVHSKVNAMVSFGDKLACCILGNVVLFGLGKKQLLRKSITEMPP--YITQVTAL 1011
+ +H+T V A+ F +L I + L+ LGKK+LLRK ++ P I+ T
Sbjct: 936 ELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYR 995
Query: 1012 DQWDGTMLAVGDIRESVTIFKYDIDNNSFIGVADDIVKRHVTTVKFIDVSSVIGGDRFGN 1071
D+ + VGDI+ES KY D N ADD V R +T +D ++ G D+FGN
Sbjct: 996 DR-----IYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGN 1050
Query: 1072 CWVLRVNYESDTRVASNIKACQYTLETLCHMYMNDTPMKFEIVNHMNMSD---------- 1121
+ +R+ + + + + E +N P K + + ++ D
Sbjct: 1051 VYFVRLPQDLSEEIEEDPTGGKIKWE---QGKLNGAPNKVDEIVQFHVGDVVTCLQKASM 1107
Query: 1122 ----RPAILWIGLQGTIGCFVPLITRKEQQLYQSFQSTYAELDVLHFQDNNKPEEVDLEE 1177
+I++ + G+IG +R + + + +H + P
Sbjct: 1108 IPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLE--------MHMRQEYPP------- 1152
Query: 1178 TEGALDEAYHTTKNTDHQDYVEGVISRVGRDFLSYRSSYAPSKNIIDGETLEQLTTYLPS 1237
GRD ++YRS+Y P K++IDG+ EQ T LP
Sbjct: 1153 --------------------------LCGRDHMAYRSAYFPVKDVIDGDLCEQFPT-LPM 1185
Query: 1238 D-QRWIASKM 1246
D QR IA ++
Sbjct: 1186 DLQRKIADEL 1195
>At3g55200 [A] KOG1898 Splicing factor 3b subunit 3
Length = 1214
Score = 207 bits (526), Expect = 1e-52
Identities = 189/690 (27%), Positives = 319/690 (45%), Gaps = 96/690 (13%)
Query: 74 NGTLDALGKWPIAATILSMTKLNMDRCSHTILVLITDSGNLTFWQFERD-SVSGKVYVRT 132
NG + + + I S+ + + +V+ +DSG + ++ ++ +V KV+
Sbjct: 46 NGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVH--- 102
Query: 133 LANEPISRSGIRRFVPQYQMVSDPQSRCVFFSGIERSKMC-VLADWQRGKLVVGSPIEIQ 191
E +SG RR VP + DP+ R V E+ K+ VL +L + SP+E
Sbjct: 103 --QETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAH 160
Query: 192 RSDRITLASAACDVSFDNPVNAAIEVESGTNDY------------YLSFYTMDLGLNTLL 239
+S I + D FDNP+ AAIE++ D +L+FY +DLGLN +
Sbjct: 161 KSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVS 220
Query: 240 LRKEHLLEDKSINFVMQCPNLQQYKIKTRPNDETDQDSVNPFVICGYDGYLTLIDLEGFY 299
RK D N ++ P D + ++C + ++ ++ +G
Sbjct: 221 -RKWSNPVDNGANMLVTVPG--------------GADGPSGVLVCA-ENFVIYMN-QGHP 263
Query: 300 EVSVQLPVRKTVSSTN---IINGTIHKLKKDFFILMQSNHGDMYKVGIIPDEETKAPVLE 356
+V +P R + + +++ +HK K FF L+Q+ +GD++KV + + + + L+
Sbjct: 264 DVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSE-LK 322
Query: 357 IAYFDTLPTSEDIHIFKSGALFNVSEFGTSYLTQFESLGE--DLEKITSYTPGRRSFIET 414
+ YFDT+P + I + K G LF+ SEFG L QF+++GE D+E +S + +ET
Sbjct: 323 VKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSS------NLMET 376
Query: 415 ES----------TLKNLSILDSLTSLNPLTSFHASN----STP-LTILAAANQTENLVKL 459
E LKNL +D + SL PL N TP + L +L L
Sbjct: 377 EEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRIL 436
Query: 460 TSAVDFEELISTTLPRIPSKLWTV-RIPKNETHSLIFLSMETSTTILKIHEGTVEDFGGD 518
+ E+ + LP PS +WTV + +E + I +S +T +L I E E +
Sbjct: 437 RPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEE---VN 493
Query: 519 SNPFILNKPSLFVGAMVQRSIIQVTRDCLLQIIEMHDGPYTKKLEWYPPAGVGIVTAFCN 578
+ F+ PSL V + S++QV + + I E DG EW P IV N
Sbjct: 494 DSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIRE--DGRIN---EWRTPGKRSIVKVGYN 548
Query: 579 ETQLVVALTNHEICYFEIIEDSLNELQDRVEMDSTVNSIALL-------AGQKSGYCVLG 631
Q+V+AL+ E+ YFE D +L + VE +A L ++S + +G
Sbjct: 549 RLQVVIALSGGELIYFE--ADMTGQLME-VEKHEMSGDVACLDIAPVPEGRKRSRFLAVG 605
Query: 632 CEDSSLQILNLQSKHPDFFTICAIQSLISKPHSLLFMR------------DTSDLKIHVG 679
D++++IL+L D I ++QS+ S P SLLF+ ++L ++ G
Sbjct: 606 SYDNTVRILSLDP--DDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSG 663
Query: 680 MKSGVYLSSKLNINDGTVFDVRTRFVGTKP 709
+++GV + +++ G + D R+RF+G KP
Sbjct: 664 LQNGVLFRTVVDMVTGQLSDSRSRFLGLKP 693
Score = 77.8 bits (190), Expect = 1e-13
Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 67/310 (21%)
Query: 954 QYIHETMVHSKVNAMVSFGDKLACCILGNVVLFGLGKKQLLRKSITEMPP--YITQVTAL 1011
+ +H+T V A+ F +L I + L+ LGKK+LLRK ++ P I+ T
Sbjct: 936 ELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYR 995
Query: 1012 DQWDGTMLAVGDIRESVTIFKYDIDNNSFIGVADDIVKRHVTTVKFIDVSSVIGGDRFGN 1071
D+ + VGDI+ES KY D N ADD V R +T +D ++ G D+FGN
Sbjct: 996 DR-----IYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGN 1050
Query: 1072 CWVLRVNYESDTRVASNIKACQYTLETLCHMYMNDTPMKFEIVNHMNMSD---------- 1121
+ +R+ + + + + E +N P K + + ++ D
Sbjct: 1051 VYFVRLPQDLSEEIEEDPTGGKIKWE---QGKLNGAPNKVDEIVQFHVGDVVTCLQKASM 1107
Query: 1122 ----RPAILWIGLQGTIGCFVPLITRKEQQLYQSFQSTYAELDVLHFQDNNKPEEVDLEE 1177
+I++ + G+IG +R + + + +H + P
Sbjct: 1108 IPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLE--------MHMRQEYPP------- 1152
Query: 1178 TEGALDEAYHTTKNTDHQDYVEGVISRVGRDFLSYRSSYAPSKNIIDGETLEQLTTYLPS 1237
GRD ++YRS+Y P K++IDG+ EQ T LP
Sbjct: 1153 --------------------------LCGRDHMAYRSAYFPVKDVIDGDLCEQFPT-LPM 1185
Query: 1238 D-QRWIASKM 1246
D QR IA ++
Sbjct: 1186 DLQRKIADEL 1195
>Hs13435359 [L] KOG1897 Damage-specific DNA binding complex subunit DDB1
Length = 1140
Score = 60.5 bits (145), Expect = 2e-08
Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 26/299 (8%)
Query: 424 LDSLTSLNPLTSF-----HASNSTPLTILAAANQTENLVKLTSAVDFEELISTTLPRIPS 478
+++ T+L P+ L + A + +L + + + E S LP I
Sbjct: 350 METFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKG 409
Query: 479 KLWTVRI-PKNETHSLIFLSMETSTTILKIHEGTVEDFGGDSNPFILNKPSLFVGAMVQR 537
LW +R P ET+ + LS T +L ++ VE+ + F+ ++ + F G + +
Sbjct: 410 -LWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEET--ELMGFVDDQQTFFCGNVAHQ 466
Query: 538 SIIQVTRDCLLQIIEMHDGPYTKKLEWYPPAGVGIVTAFCNETQLVVALTNHEICYFEII 597
+IQ+T + + + P EW P I A CN +Q+VVA+ + Y +I
Sbjct: 467 QLIQITSASVRLVSQE---PKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIH 522
Query: 598 EDSLNELQDRVEMDSTVNSIALL-AGQKSG---YCVLGC-EDSSLQILNLQSKHPDFFTI 652
L ++ EM+ V + + G +G C +G D S +IL L S F +
Sbjct: 523 PQELRQI-SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS-----FEL 576
Query: 653 CAIQSLISK--PHSLLFMRDTSDLKIHVGMKSGVYLSSKLNINDGTVFDVRTRFVGTKP 709
+ L + P S+L S + + G LNI G + D + +GT+P
Sbjct: 577 LHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP 635
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,359,206
Number of Sequences: 60738
Number of extensions: 3064615
Number of successful extensions: 7476
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7378
Number of HSP's gapped (non-prelim): 27
length of query: 1269
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1151
effective length of database: 23,222,132
effective search space: 26728673932
effective search space used: 26728673932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)