ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2172 check: MH AJ KOG0123 RNA processing and modification Polyadenylate-binding protein (RRM superfamily)
r_klactI2172 check: MH AJ KOG0123 Translation, ribosomal structure and biogenesis Polyadenylate-binding protein (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2172 736461 738758 766
(766 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 415 e-115
YHR015w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 358 2e-98
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 128 3e-29
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 128 4e-29
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 125 2e-28
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 125 2e-28
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 125 3e-28
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 124 4e-28
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 122 3e-27
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 120 8e-27
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 119 2e-26
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 116 1e-25
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 115 2e-25
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 111 4e-24
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 109 2e-23
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 109 2e-23
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 108 3e-23
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 108 3e-23
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 108 4e-23
Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 103 1e-21
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 97 7e-20
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 84 1e-15
At1g47500 [R] KOG0118 FOG: RRM domain 83 2e-15
At1g47490 [R] KOG0118 FOG: RRM domain 83 2e-15
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 82 2e-15
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 80 9e-15
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 79 2e-14
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 76 2e-13
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 75 3e-13
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 75 4e-13
At3g19130 [R] KOG0118 FOG: RRM domain 74 1e-12
At1g49600 [R] KOG0118 FOG: RRM domain 73 1e-12
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 71 7e-12
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 71 7e-12
At1g11650 [R] KOG0118 FOG: RRM domain 70 2e-11
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 68 5e-11
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 68 6e-11
At5g54900 [R] KOG0118 FOG: RRM domain 68 6e-11
CE18909 [R] KOG4733 FOG: RRM domain 66 2e-10
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 66 2e-10
CE18908 [R] KOG4733 FOG: RRM domain 66 2e-10
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 66 2e-10
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 62 3e-09
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 62 4e-09
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 62 4e-09
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 62 4e-09
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 61 7e-09
Hs8400724 [R] KOG4733 FOG: RRM domain 61 7e-09
Hs8400722 [R] KOG4733 FOG: RRM domain 61 7e-09
Hs8400720 [R] KOG4733 FOG: RRM domain 61 7e-09
Hs8400718 [R] KOG4733 FOG: RRM domain 61 7e-09
Hs4506447 [R] KOG4733 FOG: RRM domain 61 7e-09
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 61 7e-09
At4g27000 [R] KOG0118 FOG: RRM domain 60 1e-08
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 60 1e-08
Hs7657506 [R] KOG4733 FOG: RRM domain 60 2e-08
7290689 [A] KOG0131 Splicing factor 3b subunit 4 60 2e-08
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 59 2e-08
YNL016w [R] KOG0118 FOG: RRM domain 59 3e-08
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 59 3e-08
At3g52380 [R] KOG0118 FOG: RRM domain 59 3e-08
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 59 3e-08
7290149 [R] KOG0118 FOG: RRM domain 59 4e-08
YHR086w [R] KOG0118 FOG: RRM domain 58 6e-08
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 58 6e-08
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 58 6e-08
HsM13236563 [R] KOG0226 RNA-binding proteins 58 6e-08
Hs21359951 [R] KOG0226 RNA-binding proteins 58 6e-08
At1g54080 [R] KOG0118 FOG: RRM domain 57 8e-08
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 57 1e-07
At3g04500 [R] KOG0226 RNA-binding proteins 57 1e-07
At2g18510 [A] KOG0131 Splicing factor 3b subunit 4 57 1e-07
7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 57 1e-07
At1g34140 [R] KOG0118 FOG: RRM domain 56 2e-07
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 55 4e-07
Hs4506449 [R] KOG4733 FOG: RRM domain 55 4e-07
CE24459 [R] KOG0226 RNA-binding proteins 55 5e-07
7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 55 5e-07
7296727 [R] KOG0226 RNA-binding proteins 54 7e-07
SPAC17A2.09c [R] KOG0118 FOG: RRM domain 54 9e-07
At3g14100 [R] KOG0118 FOG: RRM domain 54 9e-07
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 54 1e-06
At5g50250 [R] KOG0118 FOG: RRM domain 54 1e-06
SPBC29A10.02 [T] KOG4363 Putative growth response protein 53 2e-06
Hs4758542 [R] KOG0118 FOG: RRM domain 53 2e-06
Hs14110404 [R] KOG0118 FOG: RRM domain 53 2e-06
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 53 2e-06
CE17059 [R] KOG0118 FOG: RRM domain 53 2e-06
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 53 2e-06
7291799 [R] KOG0118 FOG: RRM domain 52 3e-06
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 4e-06
Hs4506899 [A] KOG4207 Predicted splicing factor SR protein super... 52 4e-06
At5g19030 [R] KOG0118 FOG: RRM domain 52 4e-06
At1g17370 [R] KOG0118 FOG: RRM domain 52 4e-06
7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 52 4e-06
At3g08000 [R] KOG0118 FOG: RRM domain 51 8e-06
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 415 bits (1066), Expect = e-115
Identities = 238/648 (36%), Positives = 352/648 (53%), Gaps = 107/648 (16%)
Query: 117 VNLSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTK 176
+N + S H + + +S+K LFIGDL VTE+ L IF K+ SF S K+C+DS TK
Sbjct: 70 INNNKSGHKNGKLKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTK 129
Query: 177 KSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLD 236
KSLG+GYLNF D ++AE A++E NY + G+EIR+MPSLRNT FRKN GTNVFFSNLPL+
Sbjct: 130 KSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLN 189
Query: 237 NTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMC 296
N LTTRVFYD F ++GKILSCKLD RK+IGF+YFE++ A+ IK YN FF I+C
Sbjct: 190 NPLLTTRVFYDTFSRYGKILSCKLDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILC 249
Query: 297 GVHFDRNVRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTDPSENGKXXXXXXXXXXXX 356
G+HFD+ VR P FE + +R++ T+++++ + + ++ D
Sbjct: 250 GIHFDKEVRSVPNFETQKSRLDAETIIEKEQSLNEKHSKGND------------------ 291
Query: 357 XXXXXXXXXXKSLVEETNKESKNTKLPHPNAIFVKNLPINPSHDNLLNFFSKIGPVKSVY 416
KESKN N+IF+KNLP + D++LNFFS++GP+KS+Y
Sbjct: 292 ------------------KESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIY 333
Query: 417 TSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIEVKKTERHHLEESQFENNTRP 476
S+ +K WAF+TYK D++ AI++ N + + + V + + E ++F + +
Sbjct: 334 LSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKE-ERAKFIESQKI 392
Query: 477 NNYKKTVFLTNLSVICNEEFLNFLCGQERIKTERVVVRYYEEKTDTYSGYVRCASRNDAQ 536
+ T+FL NLS +CN+EFL +LC QE I+ ++ + Y+E + TYSG+++ + DA
Sbjct: 393 S----TLFLENLSAVCNKEFLKYLCHQENIRPFKIQIDGYDENSSTYSGFIKFRNFEDAT 448
Query: 537 RLFELMENKLLGDSEVKASWQQPKDVKLIEVEPSYRNHDNNGNTSNDRRSRGSKHGYVYR 596
R+F + N+L+G S V SW++ NN
Sbjct: 449 RIFNFLNNRLVGGSIVTTSWER----------------QNN------------------- 473
Query: 597 APAPNYRPPKNVRNFNKPSGSRVSQNPQMIYHHPNPYHQLQQQHYIGNIHQPMVPRAAAV 656
AP Y +RN + S +PQ+ PY+Q + + + H +
Sbjct: 474 --APKYHDGYGMRNIH------TSSHPQI-----TPYYQYSHANSLNSPHMRDL------ 514
Query: 657 MGDSSINKGVGIGISIEEPSRKAYSYEAKKQLITMLKKETKRCIDFLQHPVATRDENVST 716
SS+N I + K+++ +K+ +R IDF++ P ATRDENV
Sbjct: 515 ---SSMNSSTRSLIK---------NKNFNKKVLETFEKQVRRGIDFMRFPSATRDENVHG 562
Query: 717 IASYIMDVYYKPNYDTLAQLLLLKTGNNYYERVFQSQVELAIEKLGLQ 764
IA YI D Y+ + L + L L + Y+E V Q Q+E A LG +
Sbjct: 563 IAEYIFDTYWNRDVLILDKFLSLLNSSPYHEGVLQKQIEEAASSLGFK 610
>YHR015w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 659
Score = 358 bits (919), Expect = 2e-98
Identities = 219/641 (34%), Positives = 345/641 (53%), Gaps = 80/641 (12%)
Query: 122 SKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGY 181
+K S Q+ T K+ K +LFIG+L VTE+ML IF +++SF S K+C D TKKSLGY
Sbjct: 96 AKGSVQKYIT-KTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGY 154
Query: 182 GYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLT 241
GYLNF D DAE+A E+NY FG+E+++MPS++NT FRKNIGTNVFFSNLPL+N +LT
Sbjct: 155 GYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLT 214
Query: 242 TRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFD 301
TR FY ++G +LSC L+RRKNIGF+YF+ND +A+ IK+YN +EFF + I+CG+HFD
Sbjct: 215 TRSFYLIMIEYGNVLSCLLERRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFD 274
Query: 302 RNVRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTDPSENGKXXXXXXXXXXXXXXXXX 361
+ VR PEF ++ I + V+++ E+ NN+ S+N +
Sbjct: 275 KEVRTRPEFTKRKKMIGSDIVIED--ELLASNNL----SDNARS---------------- 312
Query: 362 XXXXXKSLVEETNKESKNTKLPHPNAIFVKNLPINPSHDNLLNFFSKIGPVKSVYTSDVS 421
I VKNLP + + + +L++FS IGP+KSV+ S+
Sbjct: 313 ------------------------KTILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQ 348
Query: 422 KFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKK 481
AF+TYK +++K A + LN + TI V + + +N N K
Sbjct: 349 ANTPHKAFVTYKNEEESKKAQKCLNKTIFKNHTIWVGPGKDKPV------HNQIGTNKKT 402
Query: 482 TVFLTNLSVICNEEFLNFLCGQERIKTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFEL 541
V+L NLS CN+EF++ LC QE+I+ + + Y T+ G+V C SR+DA+RLF +
Sbjct: 403 KVYLKNLSFNCNKEFISQLCLQEKIRFSEIKITNYNSLNWTFCGHVECFSRSDAERLFNI 462
Query: 542 MENKLLGDSEVKASWQQPKDVKLIEVEPSYRNHDNNGNTSNDRRSRGSKHGYVYRAPAPN 601
++ +L+G S V+ASW + D L E++ +D+ N N ++ +R
Sbjct: 463 LDRRLIGSSLVEASWSKNNDNILNEID-----YDDGNNNENYKKLINISSMMRFRT---- 513
Query: 602 YRPPKNVRNFNKPSGSRVSQNPQMIYHHPNPYHQLQQQHYIGNIHQPMVPRAAAVMGDSS 661
+ + K S+ Q + N Y + + PM P A + ++
Sbjct: 514 ----QELSAHQKGLTSQFQQVVSPFSSYSNSYTNMNSL-----VATPMKPHPAFNLITNT 564
Query: 662 INKGVGIGISIEEPSRKAYSYEAKKQLITMLKKETKRCIDFLQHPVATRDENVSTIASYI 721
+++ + +P R + + +++ LKK R + + ++EN+ +I+ +I
Sbjct: 565 VDE------KLHQPKR---TKQENAEILESLKKIINRNLQRISISGLNKEENLRSISEFI 615
Query: 722 MDVYYKPNYDTLAQLLLLKTGNNYYERVFQSQVELAIEKLG 762
DV+++ + + L+ LL+ + +++ Q QV A E LG
Sbjct: 616 FDVFWEHDSERLSHFLLMTNTSLESQKILQKQVTRAAESLG 656
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 128 bits (322), Expect = 3e-29
Identities = 106/395 (26%), Positives = 164/395 (40%), Gaps = 45/395 (11%)
Query: 125 STQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYL 184
S+ T + + +L++G+L +VTE ML +FN S+++C D+ T++SLGY Y+
Sbjct: 67 SSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYV 126
Query: 185 NFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRV 244
NF + +D E A+DE NY I GR R+M S R+ RK NVF NL + + +
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNL---DPAIDNKA 183
Query: 245 FYDEFKKFGKILSCK-----LDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVH 299
+D F FGKILSCK L K GF++F++ +A AI+ NG D + G H
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH 243
Query: 300 FDRNVRKSPEFEQKIN----RINNLTVVKEKLEMED---------DNNVTTDPSENGKXX 346
R R+S K N I NL + E D ++ D ++ +
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGF 303
Query: 347 XXXXXXXXXXXXXXXXXXXXKSL----------------VEETNKESKNTKLPHPNA--- 387
K EE K + KL N
Sbjct: 304 GFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQG 363
Query: 388 --IFVKNLPINPSHDNLLNFFSKIGPVKS--VYTSDVSKFDSSWAFITYKRIQDTKTAIE 443
+F+KNL + L FS G + S + T + K + F+ Y ++ A+
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVT 422
Query: 444 KLNGCKYMKRTIEVKKTERHHLEESQFENNTRPNN 478
++N + + V +R + SQ E + N
Sbjct: 423 EMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARN 457
Score = 59.7 bits (143), Expect = 2e-08
Identities = 51/211 (24%), Positives = 91/211 (42%), Gaps = 30/211 (14%)
Query: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
T ++I +L +TE ++F +F S+ + D N K G+G++N+ + + A+ AVD
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPR-GFGFVNYANHECAQKAVD 319
Query: 198 EYNYMPIFGREI---------RMMPSLRNTY-------FRKNIGTNVFFSNL--PLDNTK 239
E N G+++ LR Y K G N+F NL +D+ +
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 379
Query: 240 LTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
L EF FG I S K+ + K GF+ + A +A+ + N + +
Sbjct: 380 LKA-----EFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434
Query: 295 MCGVHFDRNVRKSPEFEQKINRINNLTVVKE 325
+ + VR+S + E +I N + ++
Sbjct: 435 YVALAQRKEVRRS-QLEAQIQARNQFRLQQQ 464
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 128 bits (321), Expect = 4e-29
Identities = 71/212 (33%), Positives = 117/212 (54%), Gaps = 12/212 (5%)
Query: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
T+L++GDL NVT+ L + F + + +V++C D T++SLGYGY+NF +P+DA A+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 198 EYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILS 257
E NY+P++G+ IR+M S R+ R++ N+F NL + + + +D F FG I+S
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNL---DESIDHKALHDTFSSFGNIVS 152
Query: 258 CKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQ 312
CK+ + K GF+ + N+ +A++AI++ NG D + G R R S +
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKT 212
Query: 313 KINRINNLTVVKEKLEMEDDNNVTTDPSENGK 344
K + VK E D+++ E GK
Sbjct: 213 KFTNV----YVKNLAESTTDDDLKNAFGEYGK 240
Score = 74.3 bits (181), Expect = 6e-13
Identities = 59/211 (27%), Positives = 102/211 (47%), Gaps = 18/211 (8%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+FI +L ++ LH+ F+ F + S K+ VDS+ + S GYG++ + + + A+ A+++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKL 184
Query: 200 NYMPIFGREIRMMPSLR----NTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKI 255
N M + +++ + P LR ++ K TNV+ NL T + + F ++GKI
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLK---NAFGEYGKI 241
Query: 256 LSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSP-E 309
S + + K GF+ FEN A A++ NG +F D G R +KS E
Sbjct: 242 TSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVG----RAQKKSERE 297
Query: 310 FEQKINRINNLTVVKEKLEMEDDNNVTTDPS 340
E ++ NL +K + + DPS
Sbjct: 298 TELRVRYEQNLKEAADKFQSSNLYVKNLDPS 328
Score = 57.0 bits (136), Expect = 1e-07
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 28/210 (13%)
Query: 127 QQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNF 186
++ +T K T +++ +L + T+D L N F ++ S + D KS G+G++NF
Sbjct: 204 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNF 262
Query: 187 GDPKDAENAVDEYN---------YMPIFGREIRMMPSLRNTYFR-------KNIGTNVFF 230
+ DA AV+ N Y+ ++ LR Y + K +N++
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYV 322
Query: 231 SNLPLDNTKLTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYN 285
NL + ++ + F FG + S K+ R K GF+ F A EA+ Q +
Sbjct: 323 KNL---DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 286 GKEFFDSTIMCGV---HFDRNVRKSPEFEQ 312
GK + + DR VR +F Q
Sbjct: 380 GKMIESKPLYVAIAQRKEDRRVRLQAQFSQ 409
Score = 53.9 bits (128), Expect = 9e-07
Identities = 50/188 (26%), Positives = 79/188 (41%), Gaps = 7/188 (3%)
Query: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSVYTS-DVSKFDSSWAFITYKRIQDTKTAIEKLN 446
IF+KNL + H L + FS G + S + D S + F+ Y + + AIEKLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 447 GCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKKTVFLTNLSVICNEEFLNFLCGQERI 506
G + + V R E N T+ N V++ NL+ ++ L G+
Sbjct: 186 GMLLNDKQVYVGPFLRRQ-ERDSTANKTKFTN----VYVKNLAESTTDDDLKNAFGEYGK 240
Query: 507 KTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPKDVKLIE 566
T VV++ E K+ + G+V + +DA R E + D E Q K + E
Sbjct: 241 ITSAVVMKDGEGKSKGF-GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Query: 567 VEPSYRNH 574
+ Y +
Sbjct: 300 LRVRYEQN 307
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 125 bits (315), Expect = 2e-28
Identities = 102/390 (26%), Positives = 163/390 (41%), Gaps = 53/390 (13%)
Query: 122 SKHSTQQTNTMKSE--------KQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDS 173
SK+S QT++ K + + +L++GDL +VTED+L F+ S++IC D
Sbjct: 103 SKNSRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQ 162
Query: 174 NTKKSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNL 233
T++SLGY Y+NF DA+ A+D N+ I G+ IR+M S R+ Y R++ NVF NL
Sbjct: 163 VTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNL 222
Query: 234 PLDNTKLTTRVFYDEFKKFGKILSCKL----DRRKNIGFIYFENDAAAKEAIKQYNGKEF 289
+ + + Y+ F FGKILS K+ K F++F+N +AA AI++ NGK
Sbjct: 223 ---DKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLL 279
Query: 290 FDSTIMCGVHFDRNVRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTDPSENGKXXXXX 349
+ G +R R++ E K + N+ + +M DD + S+ GK
Sbjct: 280 KGCKVFVGRFKNRKDREA-ELRSKASEFTNVYIKNFGGDM-DDERLKDVFSKYGKTLSVK 337
Query: 350 XXXXXXXXX------XXXXXXXXKSLVEETNKESKNTKLPHPN----------------- 386
K VEE N N +L
Sbjct: 338 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 397
Query: 387 -------------AIFVKNLPINPSHDNLLNFFSKIGPVKSVYTSDVSKFDSSWAFITYK 433
+++KNL + L N FS G + V + I +
Sbjct: 398 QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFS 457
Query: 434 RIQDTKTAIEKLNGCKYMKRTIEVKKTERH 463
+D A+ ++NG + + + +RH
Sbjct: 458 SPEDATKAMTEMNGRILGSKPLSIALAQRH 487
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 125 bits (315), Expect = 2e-28
Identities = 101/392 (25%), Positives = 174/392 (43%), Gaps = 54/392 (13%)
Query: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
T+L++GDL VT+ L F + SV++C D T++SLGYGY+N+ P+DA A++
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 198 EYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILS 257
E N+M + GR IR+M S+R+ RK+ N+F NL + + + ++ F FG ILS
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNL---DKSIDHKALHETFSAFGPILS 161
Query: 258 CKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFE- 311
CK+ + K GF+ ++ D AA+ AI + NG D + G F +++ P E
Sbjct: 162 CKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG-PFVHKLQRDPSGEK 220
Query: 312 -----------------QKINRI-------NNLTVVKE-----------KLEMEDDNNVT 336
+++N++ + ++++ E DD
Sbjct: 221 VKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARA 280
Query: 337 TDPSENGKXXXXXXXXXXXXXXXXXXXXXXKSLVEETNKESKNTKLPHPNAIFVKNLPIN 396
D + NGK K E++ KE+ + + ++VKNL +
Sbjct: 281 VD-ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKS--QGSNLYVKNLDES 337
Query: 397 PSHDNLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTI 455
+ D L F+ G + S D S F+ + ++ AI ++NG + + +
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPL 397
Query: 456 EV----KKTERHHLEESQFENNTRPNNYKKTV 483
V +K +R ++QF + RP N V
Sbjct: 398 YVALAQRKEDRKARLQAQF-SQMRPVNMPPAV 428
Score = 61.2 bits (147), Expect = 6e-09
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 29/230 (12%)
Query: 124 HSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGY 183
H Q+ + + K T +++ +L +++++ L+ +F +F S I D K S G+G+
Sbjct: 210 HKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGF 268
Query: 184 LNFGDPKDAENAVDEYNYMPIFGREI----RMMPSLRNTYFR------------KNIGTN 227
+NF + DA AVD N +E S R T + K+ G+N
Sbjct: 269 VNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN 328
Query: 228 VFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIK 282
++ NL + +T + F FG I SCK+ R + GF+ F A AI
Sbjct: 329 LYVKNL---DESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAIT 385
Query: 283 QYNGKEFFDSTIMCGV---HFDRNVRKSPEFEQKINRINNLTVVKEKLEM 329
+ NGK + + DR R +F Q + +N V +++M
Sbjct: 386 EMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQ-MRPVNMPPAVGPRMQM 434
Score = 59.7 bits (143), Expect = 2e-08
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 7/185 (3%)
Query: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSVYTS-DVSKFDSSWAFITYKRIQDTKTAIEKLN 446
IF+KNL + H L FS GP+ S + D S + F+ Y + + AI+KLN
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 447 GCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKKTVFLTNLSVICNEEFLNFLCGQERI 506
G + + V H L+ + N V++ NLS ++E LN + G+ +
Sbjct: 195 GMLLNDKQVYVGPFV-HKLQRDPSGEKVKFTN----VYVKNLSESLSDEELNKVFGEFGV 249
Query: 507 KTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPKDVKLIE 566
T V++R E K+ + G+V + +DA R + + K D E Q K + E
Sbjct: 250 TTSCVIMRDGEGKSKGF-GFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Query: 567 VEPSY 571
++ +
Sbjct: 309 LKQKF 313
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 125 bits (313), Expect = 3e-28
Identities = 98/376 (26%), Positives = 156/376 (41%), Gaps = 42/376 (11%)
Query: 134 SEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAE 193
S +L++GDL +VTE ML+ F+ S+++C D T++SLGY Y+NF P DAE
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 194 NAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFG 253
A+D N+ I G+ +R+M S R+ RK+ N+F NL + + + YD F FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL---DKSIDNKALYDTFSAFG 123
Query: 254 KILSCKL----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPE 309
ILSCK+ + K GF++FE AA+ AI++ NG D + G F + E
Sbjct: 124 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG-RFKSRKEREAE 182
Query: 310 FEQKINRINNLTVVKEKLEMEDDN-----------NVTTDPSENGKXXXXXXXXXXXXXX 358
+ N+ + +M+D+ V TD S K
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 242
Query: 359 XXXXXXXXKSL-------------VE---------ETNKESKNTKLPHPNAIFVKNLPIN 396
K L VE E K+ + T+ N ++VKNL
Sbjct: 243 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDG 301
Query: 397 PSHDNLLNFFSKIGPVKSVYTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIE 456
+ L FS G + S + F+ + ++ A+ ++NG + +
Sbjct: 302 IDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 361
Query: 457 VKKTERHHLEESQFEN 472
V +R ++ N
Sbjct: 362 VALAQRKEERQAHLTN 377
Score = 60.1 bits (144), Expect = 1e-08
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 126 TQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLN 185
+Q+ +++ +FI +L ++ L++ F+ F + S K+ D N K GYG+++
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVH 144
Query: 186 FGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIG------TNVFFSNLPLDNTK 239
F + AE A+++ N M + R++ + +G TNV+ N D
Sbjct: 145 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD- 203
Query: 240 LTTRVFYDEFKK--FGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDS 292
DE K FG LS K+ + K GF+ FE A++A+ + NGKE
Sbjct: 204 -------DERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 256
Query: 293 TIMCGVHFDRNVRKSPEFEQKINRI 317
I G + V + E ++K ++
Sbjct: 257 QIYVG-RAQKKVERQTELKRKFEQM 280
Score = 56.2 bits (134), Expect = 2e-07
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 31/177 (17%)
Query: 133 KSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDA 192
++++ T ++I + ++ ++ L ++F S VK+ D + K S G+G+++F +DA
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGPALS---VKVMTDESGK-SKGFGFVSFERHEDA 241
Query: 193 ENAVDEYNYMPIFGREI----------------RMMPSLRNTYFRKNIGTNVFFSNLP-- 234
+ AVDE N + G++I R ++ + G N++ NL
Sbjct: 242 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 301
Query: 235 LDNTKLTTRVFYDEFKKFGKILSCKL----DRRKNIGFIYFENDAAAKEAIKQYNGK 287
+D+ +L EF FG I S K+ R K GF+ F + A +A+ + NG+
Sbjct: 302 IDDERLR-----KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 353
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 124 bits (312), Expect = 4e-28
Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 17/224 (7%)
Query: 121 NSKHSTQQTNTMKSEKQTA-LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
+ K + + + E +A L++GDL +V+E L++IF+ S +S+++C D+ TK SL
Sbjct: 20 DQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSL 79
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK 239
GY Y+NF D + A+++ NY PI GR R+M S R+ RK N+F NL D
Sbjct: 80 GYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPD--- 136
Query: 240 LTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
+ + YD F FG ILS K+ + K GF++FE + AAKEAI NG I
Sbjct: 137 IDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196
Query: 295 MCGVHFDRNVRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTD 338
H R R S E K + N L +++ N+ TTD
Sbjct: 197 YVAPHLSRKERDSQLEETKAHYTN--------LYVKNINSETTD 232
Score = 55.1 bits (131), Expect = 4e-07
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 118 NLSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKK 177
+LS + +Q T T L++ ++ T++ +F KF S + D++ K
Sbjct: 201 HLSRKERDSQLEET--KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL 258
Query: 178 SLGYGYLNFGDPKDAENAVDEYNYMPIFGREI---------RMMPSLRNTY-------FR 221
G+G++N+ +DA AV+ N + G ++ M L+ Y
Sbjct: 259 K-GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMA 317
Query: 222 KNIGTNVFFSNL--PLDNTKLTTRVFYDEFKKFGKILSCKLDRRKN-----IGFIYFEND 274
K G N+F NL +D+ KL +EF +G I S K+ R +N GF+ F
Sbjct: 318 KYQGVNLFVKNLDDSVDDEKLE-----EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTP 372
Query: 275 AAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQKINRINNL 320
A +AI + N + + + ++VR+S + Q+I N +
Sbjct: 373 EEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS-QLAQQIQARNQM 417
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 122 bits (305), Expect = 3e-27
Identities = 105/390 (26%), Positives = 171/390 (42%), Gaps = 44/390 (11%)
Query: 124 HSTQQTNTMKSEKQTA-LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYG 182
H+ +++ S TA L++GDL +VTE +L++ F +FKS SV++C D+++ +SL YG
Sbjct: 9 HAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYG 68
Query: 183 YLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTT 242
Y NF +DA A+++ N + G+ IR+M S+R R+N NVF NLP +T
Sbjct: 69 YANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLP---ESVTN 125
Query: 243 RVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCG 297
V D FKKFG I+SCK+ + + GF+ FE + AA AI+ N D I G
Sbjct: 126 AVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG 185
Query: 298 VHFDRNVRKSPEFEQKINRINNL------TVVKEK---------LEMEDDNN-------- 334
+ R PE + + NL +++EK L + D N
Sbjct: 186 KFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAF 245
Query: 335 VTTDPSENGKXXXXXXXXXXXXXXXXXXXXXXKSLVEE-------TNKESKNTKLPHPNA 387
V D E+ + K E K + + +
Sbjct: 246 VNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN 305
Query: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLN 446
I+VKN+ + + + L FS+ G + S D + F+ + ++ A++ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 447 GCKYMKRTIEV----KKTERHHLEESQFEN 472
G + + + V KK +R + QF N
Sbjct: 366 GQMFHGKPLYVAIAQKKEDRKMQLQVQFGN 395
Score = 62.0 bits (149), Expect = 3e-09
Identities = 54/213 (25%), Positives = 94/213 (43%), Gaps = 26/213 (12%)
Query: 127 QQTNTMK-SEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLN 185
++T+ +K EK T L++ +L +V+ED+L F +F S+ I D N + GY ++N
Sbjct: 189 KKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDEN-RLCRGYAFVN 247
Query: 186 FGDPKDAENAVDEYN---------YMPIFGREIRMMPSLRNTYFRKNIG-------TNVF 229
F +P+DA A + N Y+ ++ LR + K+ +N++
Sbjct: 248 FDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIY 307
Query: 230 FSNLPLDNTKLTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQY 284
N+ N +T F + G I S KL + K GF+ F A +A+K +
Sbjct: 308 VKNV---NVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 285 NGKEFFDSTIMCGVHFDRNVRKSPEFEQKINRI 317
+G+ F + + + RK Q NR+
Sbjct: 365 HGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRV 397
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 120 bits (301), Expect = 8e-27
Identities = 98/383 (25%), Positives = 165/383 (42%), Gaps = 48/383 (12%)
Query: 132 MKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKD 191
+++ ++L++GDL +V E L ++FN+ +++++C D T +SLGY Y+NF +P+D
Sbjct: 39 LQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPED 97
Query: 192 AENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKK 251
A A++ NY PI R IR+M S R+ R + NVF NL + + + Y+ F
Sbjct: 98 ASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNL---DASIDNKALYETFSS 154
Query: 252 FGKILSCK-----LDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRK 306
FG ILSCK + R K GF+ FE + A+ AI + NG D + G HF R +
Sbjct: 155 FGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG-HFVRRQDR 213
Query: 307 SPEFEQKINRINNLTVVKEKLEMEDDN--------------NVTTDPSENGKXXXXXXXX 352
+ + N+ V E+ DD V D S N +
Sbjct: 214 ARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFV 273
Query: 353 XXXXXXXXXXXXXXKSLVE----------------------ETNKESKNTKLPHPNAIFV 390
SL E E + S+ KL N +++
Sbjct: 274 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-LYL 332
Query: 391 KNLPINPSHDNLLNFFSKIGPVKSVYTSDVSK-FDSSWAFITYKRIQDTKTAIEKLNGCK 449
KNL + + + L FS+ G V S S+ + F+ Y ++ A++++NG
Sbjct: 333 KNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKM 392
Query: 450 YMKRTIEVKKTERHHLEESQFEN 472
++ + V +R ++ ++
Sbjct: 393 IGRKPLYVALAQRKEERQAHLQS 415
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 119 bits (297), Expect = 2e-26
Identities = 71/204 (34%), Positives = 107/204 (51%), Gaps = 8/204 (3%)
Query: 134 SEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAE 193
S +L++GDL +VTE ML+ F+ S+++C D T++SLGY Y+NF P DAE
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 194 NAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFG 253
A+D N+ I G+ IR+M S R+ RK+ NVF NL + + + YD F FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL---DKSIDNKALYDTFSAFG 123
Query: 254 KILSCKL----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPE 309
ILSCK+ + K F++FE AA +AI++ NG D + G F + E
Sbjct: 124 NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAE 182
Query: 310 FEQKINRINNLTVVKEKLEMEDDN 333
K N+ + E++D++
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDES 206
Score = 65.5 bits (158), Expect = 3e-10
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 133 KSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDA 192
K+++ T ++I + V ++ L +F++F SVK+ D N K S G+G++++ +DA
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDA 244
Query: 193 ENAVDEYNYMPIFGREI----------------RMMPSLRNTYFRKNIGTNVFFSNLP-- 234
AV+E N I G+ I R L+ + G N++ NL
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 235 LDNTKLTTRVFYDEFKKFGKILSCKL----DRRKNIGFIYFENDAAAKEAIKQYNGKEFF 290
+D+ KL EF FG I S K+ R K GF+ F + A +A+ + NG+
Sbjct: 305 IDDEKLRK-----EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 291 DSTIMCGVHFDRNVRKSPEFEQKINRI 317
+ + + RK+ Q + R+
Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 63.2 bits (152), Expect = 1e-09
Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 17/203 (8%)
Query: 126 TQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLN 185
+Q+ +++ +FI +L ++ L++ F+ F + S K+ D N K GY +++
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVH 144
Query: 186 FGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIG------TNVFFSNLPLDNTK 239
F + A+ A+++ N M + R++ + +G TNV+ N +
Sbjct: 145 FETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNF---GEE 201
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
+ + F +FGK LS K+ R K GF+ +E A +A+++ NGKE I
Sbjct: 202 VDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 295 MCGVHFDRNVRKSPEFEQKINRI 317
G + V + E ++K ++
Sbjct: 262 FVG-RAQKKVERQAELKRKFEQL 283
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 116 bits (290), Expect = 1e-25
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 8/197 (4%)
Query: 139 ALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+L++GDL +VTE ML+ F+ S+++C D T++SLGY Y+NF P DAE A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 199 YNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSC 258
N+ + G+ IR+M S R+ RK+ N+F NL + + YD F FG ILSC
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNL---EDSIDNKALYDTFSTFGNILSC 128
Query: 259 KL----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQKI 314
K+ + GF++FE AA++AI NG D + G HF + E +
Sbjct: 129 KVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG-HFKSRREREAELGARA 187
Query: 315 NRINNLTVVKEKLEMED 331
N+ V +++++
Sbjct: 188 LEFTNIYVKNLPVDVDE 204
Score = 63.5 bits (153), Expect = 1e-09
Identities = 46/189 (24%), Positives = 91/189 (47%), Gaps = 17/189 (8%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+FI +L ++ L++ F+ F + S K+ D + + G+G+++F + A+ A++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTM 158
Query: 200 NYMPIFGREIRMMPSLRNTYFRKNIG------TNVFFSNLPLDNTKLTTRVFYDEFKKFG 253
N M + R++ + +G TN++ NLP+D + + D F +FG
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVD---VDEQGLQDLFSQFG 215
Query: 254 KILSCKLDRRKN-----IGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSP 308
K+LS K+ R + GF+ FE A++A+ NGKE + G + V +
Sbjct: 216 KMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG-RAQKRVERQN 274
Query: 309 EFEQKINRI 317
E +++ ++
Sbjct: 275 ELKRRFEQM 283
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 115 bits (289), Expect = 2e-25
Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 10/205 (4%)
Query: 133 KSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDA 192
++ ++L+ GDL VTE L ++F + SV++C D N ++SLGY Y+NF +P DA
Sbjct: 44 QTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN-RRSLGYAYINFSNPNDA 102
Query: 193 ENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKF 252
A++ NY P+F R IR+M S R+ R + N+F NL + + + ++ F F
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNL---DASIDNKALFETFSSF 159
Query: 253 GKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKS 307
G ILSCK+ R K GF+ FE + +A+ AI + NG D + G HF R ++
Sbjct: 160 GTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG-HFIRRQERA 218
Query: 308 PEFEQKINRINNLTVVKEKLEMEDD 332
+ R N+ V E+ +D
Sbjct: 219 RDENTPTPRFTNVYVKNLPKEIGED 243
Score = 61.6 bits (148), Expect = 4e-09
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 19/209 (9%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+FI +L ++ L F+ F + S K+ +D T +S GYG++ F + A+ A+D+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 200 NYMPI------FGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFG 253
N M + G IR R+ TNV+ NLP + + R F KFG
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR---KTFGKFG 253
Query: 254 KILSCKLDRRKN-----IGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSP 308
I S + R ++ GF+ FE AA A+++ NG D + G ++ R+
Sbjct: 254 VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313
Query: 309 ---EFEQ-KINRINNLTVVKEKLEMEDDN 333
+FEQ +INR L+ DD+
Sbjct: 314 LRRKFEQERINRFEKSQGANLYLKNLDDS 342
Score = 57.8 bits (138), Expect = 6e-08
Identities = 95/445 (21%), Positives = 164/445 (36%), Gaps = 69/445 (15%)
Query: 239 KLTTRVFYDEFKKFGKILS---CKLDRRKNIGFIY--FENDAAAKEAIKQYNGKEFFDST 293
K+T +D FK ++S C+ R+++G+ Y F N A A++ N FD
Sbjct: 59 KVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRP 118
Query: 294 IMC--------------GVHFDRNVRKSPEFEQKINRINNL-TVVKEKLEMEDDNN---- 334
I G F +N+ S + + ++ T++ K+ M+
Sbjct: 119 IRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGY 178
Query: 335 --VTTDPSENGKXXXXXXXXXXXXXXXXXXXXXXKSLVEETNKESKNTKLPHPNAIFVKN 392
V + E+ + + + +NT P ++VKN
Sbjct: 179 GFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR---RQERARDENTPTPRFTNVYVKN 235
Query: 393 LPINPSHDNLLNFFSKIGPVKS-VYTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYM 451
LP D L F K G + S V D S + F+ ++ + +A+EK+NG
Sbjct: 236 LPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLG 295
Query: 452 KRTIEV----KKTERHHLEESQFENNTRPNNYKKT----VFLTNLSVICNEEFLNFLCGQ 503
+ V KK+ER +FE R N ++K+ ++L NL ++E L + +
Sbjct: 296 DDVLYVGRAQKKSEREEELRRKFEQE-RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSE 354
Query: 504 ERIKTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPKDVK 563
T V+ + + + G+V ++ +A R M K++G + + Q K+
Sbjct: 355 YGNVTSSKVMLNPQGMSRGF-GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKE-- 411
Query: 564 LIEVEPSYRNHDNNGNTSNDRRSRGSKHGYVYRAPAPNYRPPKNVRNFNKPSGSRVSQNP 623
DRR+ RAP P + F+ P G + P
Sbjct: 412 -------------------DRRAHLQALFSQIRAPGP-------MSGFHHPPGGPMPGPP 445
Query: 624 QMIYHHPNPYHQLQQQHYIGNIHQP 648
Q +Y N + Q IG QP
Sbjct: 446 QHMYVGQNGASMVPSQP-IGYGFQP 469
Score = 50.8 bits (120), Expect = 8e-06
Identities = 43/173 (24%), Positives = 77/173 (43%), Gaps = 29/173 (16%)
Query: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
T +++ +LP + ED L F KF +S + D + S +G++NF + A +AV+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVE 287
Query: 198 EYN---------YMPIFGREIRMMPSLRNTY-------FRKNIGTNVFFSNL--PLDNTK 239
+ N Y+ ++ LR + F K+ G N++ NL +D+ K
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 240 LTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGK 287
L + F ++G + S K+ + GF+ + N A A+ + NGK
Sbjct: 348 LK-----EMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 111 bits (278), Expect = 4e-24
Identities = 65/200 (32%), Positives = 104/200 (51%), Gaps = 9/200 (4%)
Query: 128 QTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFG 187
Q T S +L++GDL +V E +L F+ S+++C D+ T+ SLGY Y+NF
Sbjct: 22 QNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQ 81
Query: 188 DPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYD 247
P DAE A+D N+ + G+ +R+M S R+ R++ N+F NL + + + YD
Sbjct: 82 QPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNL---DKVIDNKSIYD 138
Query: 248 EFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDR 302
F FG ILSCK+ K GF++FE + AA+ AI++ NG + G F
Sbjct: 139 TFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG-KFQP 197
Query: 303 NVRKSPEFEQKINRINNLTV 322
+++ E + + N+ V
Sbjct: 198 RAQRNRELGETAKQFTNVYV 217
Score = 51.2 bits (121), Expect = 6e-06
Identities = 45/206 (21%), Positives = 88/206 (41%), Gaps = 28/206 (13%)
Query: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
T +++ + + ++ L +F KF + S ++ KS G+G++ F +P++AE AV
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEAETAVQ 270
Query: 198 EYNYMPIFGREIRM------MPSLRNTYFRKN------------IGTNVFFSNLPLDNTK 239
+ I G ++++ S R+ +K G N++ N LD T
Sbjct: 271 ALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKN--LDET- 327
Query: 240 LTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
+ +F+ +G I S K+ R K GF+ FE A A+ + N K +
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 387
Query: 295 MCGVHFDRNVRKSPEFEQKINRINNL 320
+ + R++ Q + R+ ++
Sbjct: 388 YVAIAQRKEDRRAQLASQYMQRLASM 413
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 109 bits (272), Expect = 2e-23
Identities = 91/373 (24%), Positives = 150/373 (39%), Gaps = 43/373 (11%)
Query: 139 ALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+L++GDL +VTE ML+ F+ S++IC D T S Y Y+NF KDAE+A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 199 YNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSC 258
N+ I G+ +R+M S R+ RK+ N+F NL + + + YD FG ILSC
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNL---DKSINNKALYDTVSAFGNILSC 128
Query: 259 KL----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQKI 314
+ + K GF++FE AA+ AIK+ NG + G R R++ E +
Sbjct: 129 NVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA-ELGARA 187
Query: 315 NRINNLTVVKEKLEMEDDN--------------NVTTDPSENGKXXXXXXXXXXXXXXXX 360
N+ + +M+D+ V TD S K
Sbjct: 188 KEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 247
Query: 361 XXXXXXKSL-------------------VEETNKESKNTKLPHPNAI--FVKNLPINPSH 399
K L ++ T ++ K ++ + +VKNL
Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDD 307
Query: 400 DNLLNFFSKIGPVKSVYTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIEVKK 459
+ L FS G + S + F+ + ++ A+ ++NG + + V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 460 TERHHLEESQFEN 472
+R ++ N
Sbjct: 368 AQRKEERQAYLTN 380
Score = 63.2 bits (152), Expect = 1e-09
Identities = 58/224 (25%), Positives = 99/224 (43%), Gaps = 24/224 (10%)
Query: 126 TQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLN 185
+Q+ +++ +F+ +L ++ L++ + F + S + D N K GYG+++
Sbjct: 87 SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVH 144
Query: 186 FGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGT------NVFFSNL--PLDN 237
F + AE A+ + N M + GR++ + +G NV+ N +D+
Sbjct: 145 FETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDD 204
Query: 238 TKLTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDS 292
+L D F KFG LS K+ + K GF+ FE A++A+ + NGKE
Sbjct: 205 ERLK-----DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 293 TIMCG---VHFDRNVRKSPEFEQ-KINRINNLTVVKEKLEMEDD 332
I G +R FEQ K +RI VV ++ DD
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 109 bits (272), Expect = 2e-23
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%)
Query: 139 ALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+L++GDLP +V E L + F+ S+++C D T++SLGY Y+NF P DAE A+D
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 199 YNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSC 258
N+ + + IR+M S R+ R++ NVF NL + + + YD F FG ILSC
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNL---DRAIDNKAIYDTFSAFGNILSC 119
Query: 259 KL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQK 313
K+ K GF++FE + AA +I + NG + G R R+ E +K
Sbjct: 120 KVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK-ELGEK 178
Query: 314 INRINNLTVVKEKLEMEDD 332
N+ V + +D+
Sbjct: 179 AKLFTNVYVKNFTEDFDDE 197
Score = 64.7 bits (156), Expect = 5e-10
Identities = 42/186 (22%), Positives = 86/186 (45%), Gaps = 9/186 (4%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+FI +L + +++ F+ F + S K+ D S GYG+++F + A ++D+
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKV 150
Query: 200 NYMPIFGREIRMMPSLRNTYFRKNIG------TNVFFSNLPLDNTKLTTRVFYDEFKKFG 253
N M + G+++ + + K +G TNV+ N D + F++ + K
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKIT 210
Query: 254 --KILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFE 311
K++S + + K GF+ FE AA+ A++ NGK+ + + + + E +
Sbjct: 211 SYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
Query: 312 QKINRI 317
+K +
Sbjct: 271 RKFEEL 276
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 108 bits (270), Expect = 3e-23
Identities = 94/379 (24%), Positives = 162/379 (41%), Gaps = 51/379 (13%)
Query: 139 ALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+L+IGDL +V+E ML F+ S+++C D+ ++ SLGY Y+NF P DAE A+D
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 199 YNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSC 258
N+ I GR +R+M S R+ R+ N+F NL + + + YD F FG ILSC
Sbjct: 118 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNL---DRVIDNKSVYDTFSLFGNILSC 174
Query: 259 KL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQK 313
K+ K GF++FE + +A+ AI++ NG D + G F ++ E +
Sbjct: 175 KVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG-KFQPRAQRMKELGES 233
Query: 314 INRINNLTVV-------KEKLEM------EDDNNVTTDPSENGKXXXXXXXXXXXXXXXX 360
+ N+ V +EKL E + V ++
Sbjct: 234 GLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQ 293
Query: 361 XXXXXXKSLVEETN----------KESKNTKLPHPNA--------------IFVKNLPIN 396
S++E T+ K ++ +L ++VKN+ +
Sbjct: 294 AVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEED 353
Query: 397 PSHDNLLNFFSKIGPVKSVYTS-DVSKFDSSWAFITYKRIQDTKTAIEKLN----GCKYM 451
+ D L + FS G + S D + + F+ +++ ++ A+ +N G K +
Sbjct: 354 LNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPL 413
Query: 452 KRTIEVKKTERHHLEESQF 470
+ +K +R SQ+
Sbjct: 414 YVALAQRKEDRRAQLASQY 432
Score = 52.4 bits (124), Expect = 3e-06
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 136 KQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENA 195
K T +F+ + ++ ++ L +F+KF S + D+ K G+G++ F D A A
Sbjct: 236 KYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPK-GFGFVAFADQDAAGQA 294
Query: 196 VDEYNYMPIFGREIRMM------------------PSLRNTYFRKNIGTNVFFSNLPLDN 237
V++ N + G + ++ +L+ ++ G N++ N+ D
Sbjct: 295 VEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEED- 353
Query: 238 TKLTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGK 287
L D F FG I S K+ R K GF+ FE A A+ N K
Sbjct: 354 --LNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK 406
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 108 bits (270), Expect = 3e-23
Identities = 94/379 (24%), Positives = 162/379 (41%), Gaps = 51/379 (13%)
Query: 139 ALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+L+IGDL +V+E ML F+ S+++C D+ ++ SLGY Y+NF P DAE A+D
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 199 YNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSC 258
N+ I GR +R+M S R+ R+ N+F NL + + + YD F FG ILSC
Sbjct: 118 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNL---DRVIDNKSVYDTFSLFGNILSC 174
Query: 259 KL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQK 313
K+ K GF++FE + +A+ AI++ NG D + G F ++ E +
Sbjct: 175 KVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG-KFQPRAQRMKELGES 233
Query: 314 INRINNLTVV-------KEKLEM------EDDNNVTTDPSENGKXXXXXXXXXXXXXXXX 360
+ N+ V +EKL E + V ++
Sbjct: 234 GLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQ 293
Query: 361 XXXXXXKSLVEETN----------KESKNTKLPHPNA--------------IFVKNLPIN 396
S++E T+ K ++ +L ++VKN+ +
Sbjct: 294 AVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEED 353
Query: 397 PSHDNLLNFFSKIGPVKSVYTS-DVSKFDSSWAFITYKRIQDTKTAIEKLN----GCKYM 451
+ D L + FS G + S D + + F+ +++ ++ A+ +N G K +
Sbjct: 354 LNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPL 413
Query: 452 KRTIEVKKTERHHLEESQF 470
+ +K +R SQ+
Sbjct: 414 YVALAQRKEDRRAQLASQY 432
Score = 52.4 bits (124), Expect = 3e-06
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 136 KQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENA 195
K T +F+ + ++ ++ L +F+KF S + D+ K G+G++ F D A A
Sbjct: 236 KYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPK-GFGFVAFADQDAAGQA 294
Query: 196 VDEYNYMPIFGREIRMM------------------PSLRNTYFRKNIGTNVFFSNLPLDN 237
V++ N + G + ++ +L+ ++ G N++ N+ D
Sbjct: 295 VEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEED- 353
Query: 238 TKLTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGK 287
L D F FG I S K+ R K GF+ FE A A+ N K
Sbjct: 354 --LNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK 406
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 108 bits (269), Expect = 4e-23
Identities = 65/210 (30%), Positives = 110/210 (51%), Gaps = 12/210 (5%)
Query: 139 ALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+L++GDL NVT+ L++ F + SV++C D+ T SLGYGY+N+ + DAE A+ +
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 199 YNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSC 258
NY + G+ IR+ S R++ R++ N+F NL + + + ++ F G I+SC
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL---DKSVDNKTLHEAFSGCGTIVSC 163
Query: 259 K-----LDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQK 313
K + + + GF+ F+ + +AK AI++ NGK D I G + R+S + K
Sbjct: 164 KVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMK 223
Query: 314 INRINNLTVVKEKLEMEDDNNVTTDPSENG 343
+ VK E D+ + T + G
Sbjct: 224 FTNV----YVKNLSEATTDDELKTTFGQYG 249
Score = 60.8 bits (146), Expect = 7e-09
Identities = 52/186 (27%), Positives = 89/186 (46%), Gaps = 18/186 (9%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
LF+ +L +V LH F+ + S K+ D + +S GYG++ F A+NA+++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 200 NYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFK----KFGKI 255
N + ++I + P LR R++ + F+N+ + N L+ DE K ++G I
Sbjct: 195 NGKVLNDKQIFVGPFLRKEE-RESAADKMKFTNVYVKN--LSEATTDDELKTTFGQYGSI 251
Query: 256 LSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEF 310
S + R + GF+ FEN A A++ NGK+F D G +K E
Sbjct: 252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVG-----KAQKKSER 306
Query: 311 EQKINR 316
E +++R
Sbjct: 307 ELELSR 312
Score = 53.9 bits (128), Expect = 9e-07
Identities = 48/173 (27%), Positives = 79/173 (44%), Gaps = 25/173 (14%)
Query: 136 KQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENA 195
K T +++ +L T+D L F ++ S +S + D + K S +G++NF +P+DA A
Sbjct: 223 KFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARA 281
Query: 196 VDEYN---------YMPIFGREIRMMPSLRNTYFR-------KNIGTNVFFSNLPLDNTK 239
V+ N Y+ ++ L Y + K G N++ NL D+T
Sbjct: 282 VEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNL--DDT- 338
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGK 287
+T + F +FG I SCK+ R K GF+ F + A + + NGK
Sbjct: 339 VTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK 391
Score = 53.9 bits (128), Expect = 9e-07
Identities = 53/197 (26%), Positives = 78/197 (38%), Gaps = 7/197 (3%)
Query: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLN 446
+FVKNL + + L FS G + S +D + F+ + K AIEKLN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 447 GCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKKTVFLTNLSVICNEEFLNFLCGQERI 506
G + I V R ES + N Y K NLS ++ L GQ
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK-----NLSEATTDDELKTTFGQYGS 250
Query: 507 KTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPKDVKLIE 566
+ VV+R + K+ + G+V + DA R E + K D E Q K + +E
Sbjct: 251 ISSAVVMRDGDGKSRCF-GFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 309
Query: 567 VEPSYRNHDNNGNTSND 583
+ Y ++G D
Sbjct: 310 LSRRYEQGSSDGGNKFD 326
>Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 360
Score = 103 bits (256), Expect = 1e-21
Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 7/155 (4%)
Query: 136 KQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENA 195
+ +L++GDL VTE ML+ F+ S++IC D T++SLGY Y+N+ P DA+ A
Sbjct: 160 QMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRA 219
Query: 196 VDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKI 255
++ N+ I GR +R+M S R+ RK+ NVF NL + + Y+ F FG I
Sbjct: 220 LETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNL---GKTIDNKALYNIFSAFGNI 276
Query: 256 LSCKL--DRR--KNIGFIYFENDAAAKEAIKQYNG 286
LSCK+ D + K GF++F+ +A+ AI NG
Sbjct: 277 LSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 311
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 97.4 bits (241), Expect = 7e-20
Identities = 60/169 (35%), Positives = 88/169 (51%), Gaps = 7/169 (4%)
Query: 133 KSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDA 192
K + AL++GDL +VTEDML+ F +IC D T+ LGYGY+NF P DA
Sbjct: 13 KKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADA 72
Query: 193 ENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKF 252
E A++ N+ I G+ R+M S + RK+ N+F NL + + R + F F
Sbjct: 73 EWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNL---DKSIDNRALFYLFSAF 129
Query: 253 GKILSCKL----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCG 297
G ILSCK+ + K +++F++ AAA AI NG + + G
Sbjct: 130 GNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Score = 50.8 bits (120), Expect = 8e-06
Identities = 50/201 (24%), Positives = 89/201 (43%), Gaps = 26/201 (12%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+FI +L ++ L +F+ F + S K+ D N K GY Y++F A A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWHM 165
Query: 200 NYMPIFGREIRM----MPSLRNTYFR---KNIGTNVFFSNL--PLDNTKLTTRVFYDEFK 250
N + + R++ + P R R + TNVF N+ +D+ KL + F
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLK-----ELFC 220
Query: 251 KFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVR 305
++G S K+ R K GF+ +E AA++A+ +GK D ++ + +
Sbjct: 221 EYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKS-IDGKVLYVGRAQKKIE 279
Query: 306 KSPEFEQKINRINNLTVVKEK 326
+ E ++ R+ +KEK
Sbjct: 280 RLAELRRRFERLR----LKEK 296
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 83.6 bits (205), Expect = 1e-15
Identities = 63/220 (28%), Positives = 106/220 (47%), Gaps = 12/220 (5%)
Query: 130 NTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDP 189
N S + +L++GDL +VTE L + F+ SV +C +S T KS+ Y Y+NF P
Sbjct: 13 NHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSP 72
Query: 190 KDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDN--TKLTTRVFYD 247
A NA+ N+ + G+ +R+M S R+ +R+ T F+NL + N + +T+
Sbjct: 73 FSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRR--TRTGFANLYVKNLDSSITSSCLER 130
Query: 248 EFKKFGKILSCKL----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRN 303
F FG ILSCK+ + K GF+ F+ + +A A +G + + +++
Sbjct: 131 MFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKD 190
Query: 304 VRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTDPSENG 343
R + Q + VK +E D+ + T S+ G
Sbjct: 191 ERAAMAGNQDSTNV----YVKNLIETVTDDCLHTLFSQYG 226
Score = 57.0 bits (136), Expect = 1e-07
Identities = 41/170 (24%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 134 SEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAE 193
++ T +++ +L VT+D LH +F+++ + +SV + D +S G+G++NF +P++A+
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAK 256
Query: 194 NAVDEYNYMPIFGREIRMMPSLRNTYFRKNI----------GTNVFFSNLPLDN--TKLT 241
A++ + + +++ + +L+ R+ + N+ +SNL + N +
Sbjct: 257 KAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMN 316
Query: 242 TRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNG 286
+ F +G+I+S K+ R K GF+ F N +K+A + NG
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNG 366
>At1g47500 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 82.8 bits (203), Expect = 2e-15
Identities = 54/195 (27%), Positives = 96/195 (48%), Gaps = 22/195 (11%)
Query: 119 LSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFN-KFKSFNSVKICVDSNTKK 177
L+ + ST + + ++F+GDL +V++ +LH F+ K+ S + K+ +D+NT +
Sbjct: 180 LNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGR 239
Query: 178 SLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSL---RNTYFRK------------ 222
S GYG++ FGD + A+ E N + R +R+ P+ N Y ++
Sbjct: 240 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRS 299
Query: 223 ---NIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKE 279
I T +F L ++ +T F +FG+I+S K+ K GF+ F N A+E
Sbjct: 300 EGDTINTTIFVGGL---DSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEE 356
Query: 280 AIKQYNGKEFFDSTI 294
A+++ NG T+
Sbjct: 357 ALEKLNGTVIGKQTV 371
>At1g47490 [R] KOG0118 FOG: RRM domain
Length = 432
Score = 82.8 bits (203), Expect = 2e-15
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 119 LSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFN-KFKSFNSVKICVDSNTKK 177
L+ + ST + + ++F+GDL +V++++LH F+ K+ S + K+ +D+NT +
Sbjct: 178 LNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGR 237
Query: 178 SLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSL---RNTYFRKN----------- 223
S GYG++ FGD + A+ E N + R +R+ P+ N Y ++
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRP 297
Query: 224 ----IGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKE 279
+ T +F L ++ +T F +FG+I+S K+ K GF+ F N A+E
Sbjct: 298 EGDIMNTTIFVGGL---DSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEE 354
Query: 280 AIKQYNGKEFFDSTI 294
A+++ NG T+
Sbjct: 355 ALEKLNGTVIGKQTV 369
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 82.4 bits (202), Expect = 2e-15
Identities = 54/192 (28%), Positives = 100/192 (51%), Gaps = 13/192 (6%)
Query: 120 SNSKH--STQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKK 177
SN+++ S QT + +T L + LP N+T++ ++F S K+ D T +
Sbjct: 26 SNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 85
Query: 178 SLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDN 237
SLGYG++N+ DPKDAE A++ N + + + I++ + ++ ++ N++ S LP
Sbjct: 86 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLP--- 140
Query: 238 TKLTTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIKQYNGKEFFD 291
+T + F ++G+I++ ++ + +GFI F+ A+EAIK NG++
Sbjct: 141 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Query: 292 STIMCGVHFDRN 303
+T V F N
Sbjct: 201 ATEPITVKFANN 212
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 80.5 bits (197), Expect = 9e-15
Identities = 84/358 (23%), Positives = 151/358 (41%), Gaps = 36/358 (10%)
Query: 121 NSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLG 180
N+ S+ + + +T L + LP N+T++ L ++F S K+ D T +SLG
Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 181 YGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKL 240
YG++N+ DPKDAE A++ N + + + I++ + ++ ++ N++ S LP +
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLP---KTM 136
Query: 241 TTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
T + F ++G+I++ ++ + +GFI F+ A+EAIK NG++ +T
Sbjct: 137 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 196
Query: 295 MCGVHFDRNVRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTDPSENGKXXXXXXXXXX 354
V F N QK N+ + +L + P +
Sbjct: 197 PITVKFANNP------SQKTNQ-----AILSQLYQSPNRRY---PGPLAQQAQRFRLDNL 242
Query: 355 XXXXXXXXXXXXKSLVEETNKESKNTKLPHPN---AIFVKNLPINPSHDNLLNFFSKIGP 411
++ T+ N HP IFV NL + L F G
Sbjct: 243 LNMAYGVKRFSPMTIDGMTSLAGINIP-GHPGTGWCIFVYNLAPDADESILWQMFGPFGA 301
Query: 412 VKSVYTSDVSKFDSS----WAFITYKRIQDTKTAIEKLNGCKYMKRTIEVK-KTERHH 464
V +V + F+++ + F+T + AI LNG + R ++V KT + H
Sbjct: 302 VTNVKV--IRDFNTNKCKGFGFVTMTNYDEAAMAIRSLNGYRLGDRVLQVSFKTNKTH 357
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 79.3 bits (194), Expect = 2e-14
Identities = 81/356 (22%), Positives = 139/356 (38%), Gaps = 27/356 (7%)
Query: 118 NLSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKK 177
N +N+ + N + + +T L + LP +++D + ++F F S K+ D T +
Sbjct: 90 NNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQ 149
Query: 178 SLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDN 237
SLGYG++N+ +DAE A++ N + + + I++ S+ G N++ S LP +
Sbjct: 150 SLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKV--SIARPSSESIKGANLYVSGLPKNM 207
Query: 238 TKLTTRVFYDEFKKFGKILSCKL-----------DRRKNIGFIYFENDAAAKEAIKQYNG 286
T+ F +GKI++ ++ K +GFI F+ A AIK+ NG
Sbjct: 208 TQSDLESL---FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Query: 287 KEFFDSTIMCGVHFDRNVRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTDPSENGKXX 346
+ST V F N + N + L + +
Sbjct: 265 TTPKNSTEPITVKFANNPSSNK------NSMQPLAAYIAPQNTRGGRAFPANAAAGAAAA 318
Query: 347 XXXXXXXXXXXXXXXXXXXXKSLVEE--TNKESK-NTKLPHPNAIFVKNLPINPSHDNLL 403
L + TN + NT IFV NL + + L
Sbjct: 319 AAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENVLW 378
Query: 404 NFFSKIGPVKSV-YTSDV-SKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIEV 457
F G V+SV D+ S + F+T ++ AI+ LNG R +++
Sbjct: 379 QLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQL 434
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 75.9 bits (185), Expect = 2e-13
Identities = 47/181 (25%), Positives = 91/181 (49%), Gaps = 11/181 (6%)
Query: 129 TNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGD 188
TN + +T L + LP N+T+D ++F S K+ D T + LGYG++N+ D
Sbjct: 30 TNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFVNYPD 89
Query: 189 PKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDE 248
P DA+ A++ N + + + I++ + ++ ++ N++ S LP ++ +
Sbjct: 90 PNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD--ANLYVSGLP---KTMSQKEMEQL 144
Query: 249 FKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDR 302
F ++G+I++ ++ + +GFI F+ A+EAIK NG++ + V F
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 303 N 303
N
Sbjct: 205 N 205
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 75.5 bits (184), Expect = 3e-13
Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 11/173 (6%)
Query: 137 QTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAV 196
+T L + LP N+T+D L ++F+ S K+ D SLGYG++N+ KDAE A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 197 DEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKIL 256
+ N + + + I++ + ++ K+ N++ S LP +T + D F +FG+I+
Sbjct: 79 NTLNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLP---RTMTQKDVEDMFSRFGRII 133
Query: 257 SCKL------DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRN 303
+ ++ + + FI F+ + A+EAI +NG + S+ V F N
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPIAVKFAAN 186
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 75.1 bits (183), Expect = 4e-13
Identities = 47/168 (27%), Positives = 82/168 (47%), Gaps = 11/168 (6%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL +V+ ++L + F KF + K+ D T+KS GYG+++F + ++AENA+
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 88
Query: 200 NYMPIFGREIRMMPSLR--NTYFRKNIGTNVFFSNLPLDNTKL---------TTRVFYDE 248
N I R +R + R + R + F++ DNT + T D
Sbjct: 89 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 148
Query: 249 FKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMC 296
F +G I ++ + + F+ +E A +AI + NGKE + + C
Sbjct: 149 FSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRC 196
>At3g19130 [R] KOG0118 FOG: RRM domain
Length = 435
Score = 73.6 bits (179), Expect = 1e-12
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 28/198 (14%)
Query: 125 STQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFN-KFKSFNSVKICVDSNTKKSLGYGY 183
ST + +++ ++F+GDL +VT+ +LH F+ ++ S S K+ +DSNT +S GYG+
Sbjct: 189 STGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGF 248
Query: 184 LNFGDPKDAENAVDEYNYMPIFGREIRM-------------MPSLRNTYFRKNIGTN--- 227
+ FGD + A+ E N R++R+ S + G+N
Sbjct: 249 VRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSM 308
Query: 228 VFFSNLPLDNTKLTTRV------FYDE-----FKKFGKILSCKLDRRKNIGFIYFENDAA 276
+ S ++T T V DE F +FG+++S K+ K GF+ F + +
Sbjct: 309 GYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKS 368
Query: 277 AKEAIKQYNGKEFFDSTI 294
A++AI+ NG +T+
Sbjct: 369 AEDAIESLNGTVIGKNTV 386
>At1g49600 [R] KOG0118 FOG: RRM domain
Length = 445
Score = 73.2 bits (178), Expect = 1e-12
Identities = 52/202 (25%), Positives = 90/202 (43%), Gaps = 29/202 (14%)
Query: 119 LSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIF-NKFKSFNSVKICVDSNTKK 177
L+ + ST + ++ ++F+GDL +V++ +L F ++ S K+ +DSNT +
Sbjct: 194 LNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGR 253
Query: 178 SLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRM---MPSLRNTYFRKN----------- 223
S GYG++ FGD + A+ E N R++R+ P Y ++N
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGH 313
Query: 224 -----------IGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFE 272
+ +F L D +T F FG+++S K+ K GF+ F
Sbjct: 314 GGNGSMSDGESNNSTIFVGGLDAD---VTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFA 370
Query: 273 NDAAAKEAIKQYNGKEFFDSTI 294
N +A+EAI NG +T+
Sbjct: 371 NRQSAEEAIGNLNGTVIGKNTV 392
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 70.9 bits (172), Expect = 7e-12
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 127 QQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNF 186
QQ + + + + +F+GDL V L F F + K+ D+NT KS GYG++++
Sbjct: 92 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 151
Query: 187 GDPKDAENAVDEYNYMPIFGREIRMMPSLR--------NTYFRKNI----------GTNV 228
++AE A+++ N + R IR + R + Y K+ T+V
Sbjct: 152 PKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSV 211
Query: 229 FFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKE 288
+ N+ LT F FG+I ++ + + F+ F+N AA +AI Q N ++
Sbjct: 212 YVGNI----ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 267
Query: 289 FFDSTIMCGVHFDRNVRKSP 308
+ C + K+P
Sbjct: 268 VGGQLVRCSWGKTGDTGKTP 287
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 70.9 bits (172), Expect = 7e-12
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 22/200 (11%)
Query: 127 QQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNF 186
QQ + + + + +F+GDL V L F F + K+ D+NT KS GYG++++
Sbjct: 124 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 183
Query: 187 GDPKDAENAVDEYNYMPIFGREIRMMPSLR--------NTYFRKNI----------GTNV 228
++AE A+++ N + R IR + R + Y K+ T+V
Sbjct: 184 PKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSV 243
Query: 229 FFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKE 288
+ N+ LT F FG+I ++ + + F+ F+N AA +AI Q N ++
Sbjct: 244 YVGNI----ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 299
Query: 289 FFDSTIMCGVHFDRNVRKSP 308
+ C + K+P
Sbjct: 300 VGGQLVRCSWGKTGDTGKTP 319
Score = 58.9 bits (141), Expect = 3e-08
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 134 SEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAE 193
S++ L++G+L VTED + +FN+ S K+ D + Y ++ F D A
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQAS 98
Query: 194 NAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGT----NVFFSNL--PLDNTKLTTRVFYD 247
A+ N + RE+++ ++ + I T +VF +L +DN KL +
Sbjct: 99 QALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLR-----E 153
Query: 248 EFKKFGKILSCKLDR------RKNIGFIYFENDAAAKEAIKQYNGK 287
F+ FG + K+ R K GF+ + A+ AI+Q NG+
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQ 199
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 69.7 bits (169), Expect = 2e-11
Identities = 46/173 (26%), Positives = 82/173 (46%), Gaps = 21/173 (12%)
Query: 140 LFIGDLPGNVTEDMLHNIFN-KFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+F+GDL +VT+ +L F + S K+ +D T ++ GYG++ F D + A+ E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 199 YNYMPIFGREIRMMPSL--------RNTYFRKNIG---------TNVFFSNLPLDNTKLT 241
N +P R +R+ P+ R++Y G T VF L + +T
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL---DASVT 273
Query: 242 TRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
+ F ++G+I+ K+ K GF+ F + A+EA++ NG + +T+
Sbjct: 274 DDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 68.2 bits (165), Expect = 5e-11
Identities = 49/184 (26%), Positives = 87/184 (46%), Gaps = 20/184 (10%)
Query: 118 NLSNSKHSTQQTNTMK---------SEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVK 168
N+ S T T+T + E +T L I LP +T++ + ++F S K
Sbjct: 13 NVPTSPVQTTYTSTQRYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCK 72
Query: 169 ICVDSNTKKSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNV 228
+ D T +SLGYG++N+ +DA AV +N + + + I++ + + K G+N+
Sbjct: 73 LVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIK--GSNL 130
Query: 229 FFSNLPLDNTKLTTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIK 282
+ S +P +T F+ FG+I++ ++ K +GF+ F+ A AIK
Sbjct: 131 YVSGIP---KSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIK 187
Query: 283 QYNG 286
NG
Sbjct: 188 TLNG 191
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 67.8 bits (164), Expect = 6e-11
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 134 SEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAE 193
S +++G+L + L +F+ SVK+ + S + ++ F + +DAE
Sbjct: 10 SSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAE 67
Query: 194 NAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFG 253
A+ EY + + R+IR+M R N+F NLP D T + D F FG
Sbjct: 68 RAIREYKHYELHNRQIRVMKKDE----RPPETGNIFVKNLPED---FTGKDLDDAFSMFG 120
Query: 254 KILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYN 285
+I+SCK+ + K GF+ F+ AAK+ IK ++
Sbjct: 121 EIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFS 157
Score = 52.0 bits (123), Expect = 3e-06
Identities = 45/175 (25%), Positives = 77/175 (43%), Gaps = 17/175 (9%)
Query: 127 QQTNTMKSEKQTA----LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYG 182
+Q MK +++ +F+ +LP + T L + F+ F S K+ S+ K S GYG
Sbjct: 81 RQIRVMKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGK-SKGYG 139
Query: 183 YLNFGDPKDAENAVDEYNYMP--IFGREIRMMPSLRNTYFRKNIG-------TNVFFSNL 233
++ F + K A+ + ++ + + G R++ L N +K TN F N
Sbjct: 140 FVQFKEKKAAKKVIKNFSSLDGLLLGGN-RIVVELYNPEIKKGESKKTSATFTNCFIKNF 198
Query: 234 PLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIY--FENDAAAKEAIKQYNG 286
P D ++ + + K + D K GF + FEN +A AIK +G
Sbjct: 199 PFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHG 253
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 67.8 bits (164), Expect = 6e-11
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 140 LFIGDLPGNVTEDMLHNIF-NKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+F+GDL VT+ ML + F N + S K+ +D T +S GYG++ F D + A+ E
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 199 YNYMPIFGREIRMMPS-------LRNTYFRKNIGTNVFFSNLPLDNT----KLTTRVFYD 247
N R +R+ P+ ++ ++ G N N P + T L V D
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAG-DNDPNNTTIFVGGLDANVTDD 274
Query: 248 EFK----KFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
E K +FG++L K+ K GF+ + N A+A+ A+ NG + +I
Sbjct: 275 ELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSI 325
>CE18909 [R] KOG4733 FOG: RRM domain
Length = 409
Score = 66.2 bits (160), Expect = 2e-10
Identities = 44/178 (24%), Positives = 81/178 (44%), Gaps = 15/178 (8%)
Query: 117 VNLSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTK 176
V L + +N + T L+I L N +D+L + +K+ + S K +D T
Sbjct: 86 VPLPPTSQHRASSNFNTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATN 145
Query: 177 KSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLD 236
GYG+++F P+ A AVD N + + ++ ++ TN++ +NLPLD
Sbjct: 146 NCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDP-------TNLYIANLPLD 198
Query: 237 NTKLTTRVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEF 289
T ++ E KFG ++S ++ ++ + +GF ++ + I NG F
Sbjct: 199 ---FTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNGGRF 253
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 65.9 bits (159), Expect = 2e-10
Identities = 47/189 (24%), Positives = 84/189 (43%), Gaps = 17/189 (8%)
Query: 125 STQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYL 184
S+ +T +S+ +F+GDL +T + + F F + ++ D T KS GYG++
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 185 NFGDPKDAENAVDEYNYMPIFGREI------RMMPSLRNTY--FRKNIGTNVFFSNLPLD 236
+F + DAENA+ + + GR+I R P+ ++TY K + + +
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPS 212
Query: 237 N---------TKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGK 287
N + LT ++ F FG+I+ ++ K F+ F + +A AI NG
Sbjct: 213 NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Query: 288 EFFDSTIMC 296
+ C
Sbjct: 273 TIEGHVVKC 281
>CE18908 [R] KOG4733 FOG: RRM domain
Length = 357
Score = 65.9 bits (159), Expect = 2e-10
Identities = 43/168 (25%), Positives = 78/168 (45%), Gaps = 15/168 (8%)
Query: 127 QQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNF 186
QQ + T L+I L N +D+L + +K+ + S K +D T GYG+++F
Sbjct: 70 QQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDF 129
Query: 187 GDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFY 246
P+ A AVD N + + ++ ++ TN++ +NLPLD T ++
Sbjct: 130 ESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDP-------TNLYIANLPLD---FTEQMLE 179
Query: 247 DEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEF 289
E KFG ++S ++ ++ + +GF ++ + I NG F
Sbjct: 180 TELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNGGRF 227
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 65.9 bits (159), Expect = 2e-10
Identities = 50/186 (26%), Positives = 87/186 (45%), Gaps = 25/186 (13%)
Query: 121 NSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTK---- 176
N+ +Q + +E +T L + LP +TED + ++F+ SVK+ D +
Sbjct: 128 NAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDP 187
Query: 177 ---------KSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTN 227
+SLGYG++N+ P+DAE AV+ N + + + I++ + ++ K G N
Sbjct: 188 LNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK--GAN 245
Query: 228 VFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKL-------DRRKNIGFIYFENDAAAKEA 280
++ S LP T+ F FG I++ ++ + K +GFI F+ A A
Sbjct: 246 LYVSGLPKTMTQQELEAI---FAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRA 302
Query: 281 IKQYNG 286
I NG
Sbjct: 303 IIALNG 308
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 62.4 bits (150), Expect = 3e-09
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
L++G L N+TEDML IF F S+++ +DS T +S GYG++ F D + A+ A+++
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 200 NYMPIFGREIRM 211
N + GR +++
Sbjct: 312 NGFELAGRPMKV 323
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 61.6 bits (148), Expect = 4e-09
Identities = 45/174 (25%), Positives = 74/174 (41%), Gaps = 17/174 (9%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL +T + + + F F + ++ D T KS GYG+++F + DAENA+
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 200 NYMPIFGREIRMMPSLRNTYFRKNIGTN---------VFFSNLPLDNT--------KLTT 242
+ GR+IR + R K+ N V + P + T LT
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 243 RVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMC 296
++ F FG+I+ ++ K F+ F +A AI NG + C
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 272
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 61.6 bits (148), Expect = 4e-09
Identities = 45/174 (25%), Positives = 74/174 (41%), Gaps = 17/174 (9%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL +T + + + F F + ++ D T KS GYG+++F + DAENA+
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 200 NYMPIFGREIRMMPSLRNTYFRKNIGTN---------VFFSNLPLDNT--------KLTT 242
+ GR+IR + R K+ N V + P + T LT
Sbjct: 120 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 179
Query: 243 RVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMC 296
++ F FG+I+ ++ K F+ F +A AI NG + C
Sbjct: 180 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 233
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 61.6 bits (148), Expect = 4e-09
Identities = 44/174 (25%), Positives = 77/174 (43%), Gaps = 17/174 (9%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL +T + + F F + ++ D T KS GYG+++F + DAENA+ +
Sbjct: 97 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 200 NYMPIFGREI------RMMPSLRNTY--FRKNIGTNVFFSNLPLDN---------TKLTT 242
+ GR+I R P+ ++TY K + + + N + LT
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 243 RVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMC 296
++ F FG+I+ ++ K F+ F + +A AI NG + C
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 270
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 60.8 bits (146), Expect = 7e-09
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
L++G L N+TEDML IF F +++ + DS+T +S GYG++ F D + A A+++
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
Query: 200 NYMPIFGREIRM 211
N + GR +R+
Sbjct: 291 NGFELAGRPMRV 302
>Hs8400724 [R] KOG4733 FOG: RRM domain
Length = 389
Score = 60.8 bits (146), Expect = 7e-09
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
SN+ S+ + +T L+I LP + T+ L + + S K +D T K
Sbjct: 11 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 70
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK 239
GYG+++F P A+ AV + + G + +M ++ TN++ SNLPL
Sbjct: 71 GYGFVDFDSPAAAQKAV---SALKASGVQAQMAKQ------QEQDPTNLYISNLPL---S 118
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGK 287
+ + + K FG+++S ++ R + +GF E+ + I +NGK
Sbjct: 119 MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 171
>Hs8400722 [R] KOG4733 FOG: RRM domain
Length = 373
Score = 60.8 bits (146), Expect = 7e-09
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
SN+ S+ + +T L+I LP + T+ L + + S K +D T K
Sbjct: 11 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 70
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK 239
GYG+++F P A+ AV + + G + +M ++ TN++ SNLPL
Sbjct: 71 GYGFVDFDSPAAAQKAV---SALKASGVQAQMAKQ------QEQDPTNLYISNLPL---S 118
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGK 287
+ + + K FG+++S ++ R + +GF E+ + I +NGK
Sbjct: 119 MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 171
>Hs8400720 [R] KOG4733 FOG: RRM domain
Length = 419
Score = 60.8 bits (146), Expect = 7e-09
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
SN+ S+ + +T L+I LP + T+ L + + S K +D T K
Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 103
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK 239
GYG+++F P A+ AV + + G + +M ++ TN++ SNLPL
Sbjct: 104 GYGFVDFDSPAAAQKAV---SALKASGVQAQMAKQ------QEQDPTNLYISNLPL---S 151
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGK 287
+ + + K FG+++S ++ R + +GF E+ + I +NGK
Sbjct: 152 MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204
>Hs8400718 [R] KOG4733 FOG: RRM domain
Length = 406
Score = 60.8 bits (146), Expect = 7e-09
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
SN+ S+ + +T L+I LP + T+ L + + S K +D T K
Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 103
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK 239
GYG+++F P A+ AV + + G + +M ++ TN++ SNLPL
Sbjct: 104 GYGFVDFDSPAAAQKAV---SALKASGVQAQMAKQ------QEQDPTNLYISNLPL---S 151
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGK 287
+ + + K FG+++S ++ R + +GF E+ + I +NGK
Sbjct: 152 MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204
>Hs4506447 [R] KOG4733 FOG: RRM domain
Length = 403
Score = 60.8 bits (146), Expect = 7e-09
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
SN+ S+ + +T L+I LP + T+ L + + S K +D T K
Sbjct: 44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 103
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK 239
GYG+++F P A+ AV + + G + +M ++ TN++ SNLPL
Sbjct: 104 GYGFVDFDSPAAAQKAV---SALKASGVQAQMAKQ------QEQDPTNLYISNLPL---S 151
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGK 287
+ + + K FG+++S ++ R + +GF E+ + I +NGK
Sbjct: 152 MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 60.8 bits (146), Expect = 7e-09
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
L++G L N+TEDML IF F +++ + DS+T +S GYG++ F D + A A+++
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308
Query: 200 NYMPIFGREIRM 211
N + GR +R+
Sbjct: 309 NGFELAGRPMRV 320
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 60.5 bits (145), Expect = 1e-08
Identities = 45/172 (26%), Positives = 74/172 (42%), Gaps = 20/172 (11%)
Query: 140 LFIGDLPGNVTEDMLHNIFNK-FKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
+F+GDL +VT+ ML F + S K+ D T +S GYG++ F D + A+ E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 199 YNYMPIFGREIRMMP------------SLRNTYFRKN----IGTNVFFSNLPLDNTKLTT 242
N R +R P S +NT T +F + + +T
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAV---DQSVTE 291
Query: 243 RVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI 294
F +FG+++ K+ K GF+ + N A A++A+ NG + +I
Sbjct: 292 DDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 60.1 bits (144), Expect = 1e-08
Identities = 43/175 (24%), Positives = 81/175 (45%), Gaps = 11/175 (6%)
Query: 136 KQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENA 195
+ +++G L V+E +L +F + + + D T + GYG++ F +DA+ A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 196 VDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKI 255
+ N + ++G+ IR+ + + ++G N+F NL + ++ ++ YD F FG I
Sbjct: 71 IKIMNMIKLYGKPIRVNKASAHNK-NLDVGANIFIGNL---DPEIDEKLLYDTFSAFGVI 126
Query: 256 LSCKLDRR-------KNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRN 303
L R K FI F + A+ AI+ NG+ + I F ++
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 181
>Hs7657506 [R] KOG4733 FOG: RRM domain
Length = 411
Score = 59.7 bits (143), Expect = 2e-08
Identities = 45/175 (25%), Positives = 79/175 (44%), Gaps = 19/175 (10%)
Query: 120 SNSKHSTQQTNTMKSEK--QTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKK 177
S + S +N E+ +T L+I LP T+ L + + S K +D NT +
Sbjct: 32 STNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQ 91
Query: 178 SLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDN 237
GYG+++F P A+ AV + G + +M ++ TN++ SNLP+
Sbjct: 92 CKGYGFVDFDSPAAAQKAVAS---LKANGVQAQMAKQ------QEQDPTNLYISNLPI-- 140
Query: 238 TKLTTRVFYDEFKKFGKILSCKLDRRKN-----IGFIYFENDAAAKEAIKQYNGK 287
+ + + K FG ++S ++ R N +GF E+ + I+ +NGK
Sbjct: 141 -SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 194
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 59.7 bits (143), Expect = 2e-08
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 136 KQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENA 195
+ ++ G L V+E +L +F + +V + D T+ GYG++ F +DA+
Sbjct: 11 QDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYG 70
Query: 196 VDEYNYMPIFGREIRMMPSLRNTYFRKN--IGTNVFFSNLPLDNTKLTTRVFYDEFKKFG 253
+ N + ++G+ IR+ + + +KN +G N+F NL + ++ ++ YD F FG
Sbjct: 71 IKIMNMIKLYGKPIRVN---KASAHQKNLDVGANIFIGNL---DVEVDEKLLYDTFSAFG 124
Query: 254 KILSC-------KLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRN 303
IL + + K+ FI F + A+ A+ NG+ + I F ++
Sbjct: 125 VILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKD 181
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 59.3 bits (142), Expect = 2e-08
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 132 MKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKD 191
++ + +++G L V+E +L + + SV + D T G+G++ F +D
Sbjct: 17 VERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEED 76
Query: 192 AENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKK 251
A+ A+ N + ++G+ I++ + + ++G N+F NL + ++ ++ YD F
Sbjct: 77 ADYAIKILNMIKLYGKPIKVNKASAHEK-NMDVGANIFVGNL---DPEVDEKLLYDTFSA 132
Query: 252 FGKILSCKLDRR-------KNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRN 303
FG IL R K FI F + A+ A++ NG+ + I F R+
Sbjct: 133 FGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD 191
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 58.9 bits (141), Expect = 3e-08
Identities = 35/107 (32%), Positives = 53/107 (48%), Gaps = 7/107 (6%)
Query: 128 QTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFG 187
Q+ S+ LF+GDL NV ++ L N F F S+ S + D T S GYG+++F
Sbjct: 152 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 211
Query: 188 DPKDAENAVDEYNYMPIFGREIRMMPSLR-------NTYFRKNIGTN 227
DA+NA+D + GR +R+ + + N R+N G N
Sbjct: 212 SQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGNN 258
Score = 50.8 bits (120), Expect = 8e-06
Identities = 44/231 (19%), Positives = 98/231 (42%), Gaps = 7/231 (3%)
Query: 118 NLSNSKHSTQQTNTMKSEKQTA---LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSN 174
N + S N + ++T+ L++G+L +TED+L F ++KI +D N
Sbjct: 52 NQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN 111
Query: 175 TKKSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLP 234
K++ Y ++ + DA A+ N I +++ + ++ + N+F +L
Sbjct: 112 -NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLN 170
Query: 235 LDNTKLTTRVFYDEFKKF--GKIL-SCKLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFD 291
++ T R + +F + G ++ + + GF+ F + A+ A+ G++
Sbjct: 171 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 230
Query: 292 STIMCGVHFDRNVRKSPEFEQKINRINNLTVVKEKLEMEDDNNVTTDPSEN 342
+ R+ + ++Q+ N NN + ++NN+ + N
Sbjct: 231 RPLRINWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNSNNNNNMNMGMNMN 281
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 58.9 bits (141), Expect = 3e-08
Identities = 49/189 (25%), Positives = 77/189 (39%), Gaps = 32/189 (16%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL + L F KF + KI D+NT K GYG++++ +DAE A+DE
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 200 NYMPIFGREIRMMPSL-----------------------RNTYFRKNIGT-NVFFSNLPL 235
N + R IR + R+ Y ++ T + F+
Sbjct: 194 NGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAA 253
Query: 236 DNTKL----TTRVFYDE----FKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGK 287
DNT + + DE F +FG I + + + F+ FE +A AI Q N
Sbjct: 254 DNTSVYVGNIANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNA 313
Query: 288 EFFDSTIMC 296
+ + C
Sbjct: 314 DIGGQIVRC 322
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 58.9 bits (141), Expect = 3e-08
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 127 QQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNF 186
++ T S ++ L++G+LP +T L IF + + V+I D T +S G+G++
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
Query: 187 GDPKDAENAVDEYNYMPIFGREIRM-MPSL----RNTYFRKNIGTN----------VFFS 231
G ++A+ A+ +N I GR +++ P + N R I N V+
Sbjct: 165 GSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAG 224
Query: 232 NLPLDNTKLTTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIKQYN 285
NL LT++ D F +L K+ R + GFI FE+ + A+ N
Sbjct: 225 NL---GWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281
Query: 286 GKE 288
G E
Sbjct: 282 GVE 284
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 58.9 bits (141), Expect = 3e-08
Identities = 24/72 (33%), Positives = 47/72 (64%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
L++G L N+TEDML IF F +++++ +D+ T +S GYG++ + + DA+ A+++
Sbjct: 337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
Query: 200 NYMPIFGREIRM 211
N + GR +++
Sbjct: 397 NGFELAGRLMKV 408
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 58.5 bits (140), Expect = 4e-08
Identities = 46/172 (26%), Positives = 78/172 (44%), Gaps = 13/172 (7%)
Query: 121 NSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLG 180
NS QQ + T L I LP ++T+ L+N+F+ N+ KI D T S G
Sbjct: 76 NSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFG 135
Query: 181 YGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLD-NTK 239
YG++++ D+E+A+ + N + R R+ S + TN++ NL + N
Sbjct: 136 YGFVDYKTESDSEDAIQKLN--GFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDD 193
Query: 240 LTTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIKQYN 285
+ R+ F +G I+ + R + + F+ + A+EAIK N
Sbjct: 194 MLDRI----FSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALN 241
Score = 50.4 bits (119), Expect = 1e-05
Identities = 55/264 (20%), Positives = 96/264 (35%), Gaps = 31/264 (11%)
Query: 388 IFVKNLPINPSHDNLLNFFSKIGPVKS--VYTSDVSKFDSSWAFITYKRIQDTKTAIEKL 445
+ + LP + + L N FS GP+ + + + + + F+ YK D++ AI+KL
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 446 NGCKYMKRTIEVKKTERHHLEESQFENNTRPNNYK---KTVFLTNLSVICNEEFLNFLCG 502
NG + ++V + RP +++ NLS N++ L+ +
Sbjct: 155 NGFYVRNKRLKV--------------SYARPGGQSIKDTNLYVINLSRNINDDMLDRIFS 200
Query: 503 QERIKTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPKDV 562
+ +R ++R +VR R +AQ + + N V QP V
Sbjct: 201 PYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNN------TVPEGGSQPIWV 254
Query: 563 KLIEVEPSYRNHDNNGNTSNDRRSRGSKHGYVYRAPAPNYRPPKNVRNFNKPSGSRVSQN 622
+L E + G G + P PP + N + + N
Sbjct: 255 RLAEEHGKAKAAQFMAQIGGGNGGGGG--GPPHMGPGGPMHPPHHHNNHHHNN----HHN 308
Query: 623 PQMIYHHPNPYHQLQQQHYIGNIH 646
P M HH P H Q + +H
Sbjct: 309 PHMPPHHHQPQHPHQHPQHHPQLH 332
>YHR086w [R] KOG0118 FOG: RRM domain
Length = 523
Score = 57.8 bits (138), Expect = 6e-08
Identities = 32/96 (33%), Positives = 53/96 (54%), Gaps = 1/96 (1%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIF-NKFKSFNSVKICVDSNTKKS 178
S+ +S N +KS ++F+GDL NVTE L +F N++ S + KI D T S
Sbjct: 145 SSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMS 204
Query: 179 LGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPS 214
GYG++ F + + + A+ E + + GR I++ P+
Sbjct: 205 KGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPT 240
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 57.8 bits (138), Expect = 6e-08
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 119 LSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKS 178
+ +++ + ++T+ E +FIG L T+D L + F +F + DS T +S
Sbjct: 145 MESNEDNAEETSPFNRE-DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRS 203
Query: 179 LGYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNT 238
G+G+L F +PK + + +++ G+ I ++ K +F +P D T
Sbjct: 204 RGFGFLTFKNPKCVNEVMSKEHHLD--GKIIDPKRAIPREEQEKT--AKMFVGGVPGDCT 259
Query: 239 KLTTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIKQ 283
+ R F F +FG++L L R + GF+ +EN++A + + Q
Sbjct: 260 EEEFRNF---FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 57.8 bits (138), Expect = 6e-08
Identities = 68/335 (20%), Positives = 122/335 (36%), Gaps = 32/335 (9%)
Query: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
+ LF+ +L +D L N F+ + + T ++ GYG++ F +DA+ A
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 198 EYNYMPIFGREIRM----------MPSLRNTYFRKNIGTN----VFFSNLPLDNTKLTTR 243
E + GR +R+ + + +N +K I + + NLP K +
Sbjct: 65 ELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKK--PQ 122
Query: 244 VFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTI---- 294
F KFGK+ K+ R F++ ++ AA+EA+ NG E I
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 295 -MCGVHFDRNVRKSPEFEQKINRI---NNLTVVKEKLEMEDDNNVTTDPSENGKXXXXXX 350
+ F+ K E++ ++V E + ++ D GK
Sbjct: 183 AVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAGES 242
Query: 351 XXXXXXXXXXXXXXXXKSLVEETNKESKNTKLPHPNAIFVKNLPINPSHDNLLNFFSKIG 410
S N E ++ + + +FV+NL + L N F + G
Sbjct: 243 EEEGSNVDDVEDSGDSSSDKNSINHEIRDNE-GLEDTVFVRNLLFECTEQELYNHFRQFG 301
Query: 411 PVKSVYTSDVSKFDSSW--AFITYKRIQDTKTAIE 443
P+ D S FI ++ +D + +E
Sbjct: 302 PLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>HsM13236563 [R] KOG0226 RNA-binding proteins
Length = 451
Score = 57.8 bits (138), Expect = 6e-08
Identities = 28/76 (36%), Positives = 43/76 (55%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F GDL V +D+L F++F SF K+ D T K+ GYG+++F DP D A+ E
Sbjct: 354 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 413
Query: 200 NYMPIFGREIRMMPSL 215
N + R I++ S+
Sbjct: 414 NGKYVGSRPIKLRKSM 429
>Hs21359951 [R] KOG0226 RNA-binding proteins
Length = 480
Score = 57.8 bits (138), Expect = 6e-08
Identities = 28/76 (36%), Positives = 43/76 (55%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F GDL V +D+L F++F SF K+ D T K+ GYG+++F DP D A+ E
Sbjct: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
Query: 200 NYMPIFGREIRMMPSL 215
N + R I++ S+
Sbjct: 443 NGKYVGSRPIKLRKSM 458
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 57.4 bits (137), Expect = 8e-08
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 37/192 (19%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL VT+ L + F+ F S + ++ D T +S G+G+++F + +DA+ A++E
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 200 NYMPIFGREIRMMPSLRNTYFRKN------------------IGTNVFFSNLPLDNTKLT 241
N + R+IR + + F ++ G + + P +N + T
Sbjct: 210 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFT 269
Query: 242 T----------------RVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYN 285
T R+FY G I ++ R K GF+ + A AI+ N
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYT--LGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGN 327
Query: 286 GKEF-FDSTIMC 296
+ F F I C
Sbjct: 328 AQPFLFSRQIRC 339
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 57.0 bits (136), Expect = 1e-07
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
SN K ++T E+ +F+G L ++ ++ L F ++ + T +S
Sbjct: 155 SNKKQKNEET-----EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSR 209
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIR-----MMPSLRNTYFRKNIGT------NV 228
GYGY++F + AE A+ E I GR I P+ N +K T +
Sbjct: 210 GYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTL 269
Query: 229 FFSNLPLDNTKLTTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAKEAIK 282
F NL + + ++ F K G+++S ++ ++ K G++ F N AK+A+
Sbjct: 270 FLGNLSFNADR---DAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
Query: 283 QYNGKEFFDS 292
G E+ D+
Sbjct: 327 ALQG-EYIDN 335
>At3g04500 [R] KOG0226 RNA-binding proteins
Length = 245
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 135 EKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAEN 194
E LF GDL V +D+L F +F +FN K+ D T K+ GYG+++F +P D
Sbjct: 134 ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAA 193
Query: 195 AVDEYNYMPIFGREIRMMPS 214
A+ E N + R I++ S
Sbjct: 194 ALKEMNGKYVGNRPIKLRKS 213
>At2g18510 [A] KOG0131 Splicing factor 3b subunit 4
Length = 363
Score = 57.0 bits (136), Expect = 1e-07
Identities = 39/183 (21%), Positives = 85/183 (46%), Gaps = 11/183 (6%)
Query: 130 NTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDP 189
++ + + +++G L ++E++L +F + +V + D T YG++ +
Sbjct: 17 HSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSE 76
Query: 190 KDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEF 249
+DA+ A+ N + + G+ IR+ + ++ ++G N+F NL D + ++ YD F
Sbjct: 77 EDADYAIKVLNMIKLHGKPIRVNKASQDKK-SLDVGANLFIGNLDPD---VDEKLLYDTF 132
Query: 250 KKFGKILSCKLDRR-------KNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDR 302
FG I S R + GFI +++ A+ AI+ G+ + I + +
Sbjct: 133 SAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
Query: 303 NVR 305
+ +
Sbjct: 193 DTK 195
>7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 168
Score = 57.0 bits (136), Expect = 1e-07
Identities = 35/126 (27%), Positives = 67/126 (52%), Gaps = 5/126 (3%)
Query: 135 EKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAEN 194
E +T L + LP +T++ + ++F+ S K+ D + +SLGYG++N+ +DAE
Sbjct: 23 ESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYVRAEDAEK 82
Query: 195 AVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGK 254
AV+ N + + + I++ + ++ K G N++ S LP L+ F FGK
Sbjct: 83 AVNTLNGLRLQNKVIKVSYARPSSESIK--GANLYVSGLP---KNLSQPDLEGMFASFGK 137
Query: 255 ILSCKL 260
I++ ++
Sbjct: 138 IITSRI 143
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 55.8 bits (133), Expect = 2e-07
Identities = 45/174 (25%), Positives = 79/174 (44%), Gaps = 29/174 (16%)
Query: 133 KSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDA 192
KS T +++ +L T+ L +F +F S + D K S +G++NF + A
Sbjct: 114 KSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKAEAA 172
Query: 193 ENAVDEYNYMPIFGREIRMMPSLRNTYFRKNI-----------------GTNVFFSNL-- 233
A+++ N + + +E+ + + R T +++ G N++ NL
Sbjct: 173 VTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDD 232
Query: 234 PLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNGK 287
+DNTKL + F +FG I SC K +GF+ F A +A+ + NGK
Sbjct: 233 SVDNTKLE-----ELFSEFGTITSC----NKGVGFVEFSTSEEASKAMLKMNGK 277
>Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 759
Score = 55.1 bits (131), Expect = 4e-07
Identities = 51/220 (23%), Positives = 97/220 (43%), Gaps = 22/220 (10%)
Query: 388 IFVKNLPINPSHDNLLNFFSKIGPVKS--VYTSDVSKFDSSWAFITYKRIQDTKTAIEKL 445
+FV LP + + L FS++GPVK V T SK + ++T+ ++D + A++++
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 446 ---NGCKYMKRTIEVKKTERHHLEESQFENNTRPN-----------NYKKTVFLTNLSVI 491
GCK + T+ KK E+ + EN+ P + K + + NLS
Sbjct: 66 TTFEGCK-INVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFK 124
Query: 492 CNEEFLNFLCGQERIKTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSE 551
C+E+ L + Q E + R + K + G+V+ + +A + + M K +
Sbjct: 125 CSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGF-GFVQFKNLLEAGKALKGMNMKEIKGRT 183
Query: 552 VKASW----QQPKDVKLIEVEPSYRNHDNNGNTSNDRRSR 587
V W + KD + + ++H++ S ++ R
Sbjct: 184 VAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGR 223
>Hs4506449 [R] KOG4733 FOG: RRM domain
Length = 407
Score = 55.1 bits (131), Expect = 4e-07
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 120 SNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSL 179
+++ +S+ +N +T L+I L T+ L + + S K +D T K
Sbjct: 38 NSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 97
Query: 180 GYGYLNFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK 239
GYG+++F P A+ AV + G + +M ++ TN++ SNLPL
Sbjct: 98 GYGFVDFDSPSAAQKAV---TALKASGVQAQMAKQ------QEQDPTNLYISNLPL---S 145
Query: 240 LTTRVFYDEFKKFGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGK 287
+ + K FG+++S ++ R + +GF E+ + I +NGK
Sbjct: 146 MDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGK 198
>CE24459 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 54.7 bits (130), Expect = 5e-07
Identities = 27/80 (33%), Positives = 44/80 (54%)
Query: 135 EKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAEN 194
E +F GDL V++++L F K+ SF K+ +S T KS GYG+++F D +D
Sbjct: 200 ENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVR 259
Query: 195 AVDEYNYMPIFGREIRMMPS 214
A+ E + + R I++ S
Sbjct: 260 AMREMDGKYVGNRPIKLRKS 279
>7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 421
Score = 54.7 bits (130), Expect = 5e-07
Identities = 39/166 (23%), Positives = 77/166 (45%), Gaps = 10/166 (6%)
Query: 132 MKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKD 191
M+ +++ LF+G L T++ L F +F + ++ + +S G+G++ F DP +
Sbjct: 1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60
Query: 192 AENAVDEYNYMPIFGREIRMMPSLRNTYF--RKNIGTNVFFSNLPLDNTKLTTRVFYDEF 249
N V + + GR I P T +K G VF LP + T+ R F++ +
Sbjct: 61 V-NHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRY 119
Query: 250 KKFGKIL---SCKLDRRKNIGFIYFENDAAAKEAIKQ----YNGKE 288
K +++ + + + GF+ FE +++ + + NGK+
Sbjct: 120 GKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQ 165
Score = 53.5 bits (127), Expect = 1e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+G LP NVTE L FN++ V I D KKS G+G+L+F + E+ +E
Sbjct: 98 VFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE- 156
Query: 200 NYMPIFGREIRM 211
Y+ + G+++ +
Sbjct: 157 RYINLNGKQVEI 168
>7296727 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 54.3 bits (129), Expect = 7e-07
Identities = 26/75 (34%), Positives = 43/75 (56%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F GDL +V +++L FNKF SF ++ D T KS G+G+++F +P D A+ E
Sbjct: 200 IFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEM 259
Query: 200 NYMPIFGREIRMMPS 214
+ + R I++ S
Sbjct: 260 DGRYVGSRPIKLRKS 274
>SPAC17A2.09c [R] KOG0118 FOG: RRM domain
Length = 632
Score = 53.9 bits (128), Expect = 9e-07
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 127 QQTNTMKSEKQTALFIGDL-PGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLN 185
Q N + + + ++F+GDL P D+ + + S S KI VD T S YG++
Sbjct: 171 QHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVR 230
Query: 186 FGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTK------ 239
F K+ ++A+ GR +R+ S+ + R +I + +P +
Sbjct: 231 FSSEKEQQHALMHMQGYLCQGRPLRI--SVASPKSRASIAADSALGIVPTSTSNRQPNQD 288
Query: 240 ------LTTRVFYDE-------------FKKFGKILSCKLDRRKNIGFIYFENDAAAKEA 280
L T VF F+ FG+IL+ K+ K GF+ + +AA++A
Sbjct: 289 LCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKA 348
Query: 281 IKQYNG 286
I G
Sbjct: 349 INTMQG 354
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 53.9 bits (128), Expect = 9e-07
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 35/191 (18%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL VT+ L+ F+ F S + ++ D T +S G+G+++F + +DA+ A++E
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 200 NYMPIFGREIRMMPSLR---------------------------------NTYFRKNIGT 226
N + R+IR + + T + T
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFT 265
Query: 227 NVFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYNG 286
V+ NL + T+L ++ G I ++ R K GF+ + A AI+ N
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGA-GVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNT 324
Query: 287 KEF-FDSTIMC 296
+ + F+ I C
Sbjct: 325 QPYLFNRQIKC 335
Score = 52.4 bits (124), Expect = 3e-06
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 139 ALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDE 198
++++G++ VTE +L IF S K+ K YG++++ D + A A+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLI----RKDKSSYGFVHYFDRRSAALAILS 115
Query: 199 YNYMPIFGREIRMMPSLRNTYFRKNIGT--NVFFSNLPLDNTKLTTRVFYDEFKKFGKIL 256
N +FG+ I++ + T R++ + N+F +L + ++T Y F F
Sbjct: 116 LNGRHLFGQPIKVNWAYA-TGQREDTSSHFNIFVGDL---SPEVTDATLYQSFSVFSSCS 171
Query: 257 SC------KLDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMC 296
K R + GF+ F N A+ AI + NGK I C
Sbjct: 172 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRC 217
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 53.5 bits (127), Expect = 1e-06
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 124 HSTQQTNT--MKSEKQTAL------FIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNT 175
H QQ M +++Q AL ++G + + ED + F F S+ + DS T
Sbjct: 90 HQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT 149
Query: 176 KKSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRM---------MPSLRNTYFRKNIGT 226
K G+ ++ + P+ A+ A+++ N + + GR I++ P +
Sbjct: 150 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFN 209
Query: 227 NVFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDR------RKNIGFIYFENDAAAKEA 280
++ +++ D L+ F+ FGKI SC L R K GFI +E ++++A
Sbjct: 210 RIYVASVHQD---LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 266
Query: 281 IKQYN 285
+ N
Sbjct: 267 VSSMN 271
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 53.5 bits (127), Expect = 1e-06
Identities = 43/207 (20%), Positives = 86/207 (40%), Gaps = 27/207 (13%)
Query: 117 VNLSNSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTK 176
V + S S + ++ LF+G+LP +V L +F + + ++ + +T
Sbjct: 92 VTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTD 151
Query: 177 KSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRM------------MPSLRNTYFRKNI 224
+S G+G++ ++AE AV+++N + GR + + P + + FR
Sbjct: 152 QSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR--- 208
Query: 225 GTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKL------DRRKNIGFIYFENDAAAK 278
++ NLP D + + F + GK++ ++ R + GF+ N+
Sbjct: 209 ---IYVGNLPWD---VDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Query: 279 EAIKQYNGKEFFDSTIMCGVHFDRNVR 305
AI +G+ I V +R R
Sbjct: 263 VAIAALDGQNLEGRAIKVNVAEERTRR 289
>SPBC29A10.02 [T] KOG4363 Putative growth response protein
Length = 567
Score = 53.1 bits (126), Expect = 2e-06
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 124 HSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGY 183
H +++N + + ++I LP N +++ L N+F +S K +D T GYG+
Sbjct: 282 HDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 184 LNFGDPKDA---ENAVDEYNYMPIFGRE--IRMMPSLRNTYFRKNIGTNVFFSNLPLD-N 237
F + K A +A+ Y F +E + SL++T TN++ SNLPL N
Sbjct: 342 ACFEEEKSALICISAMTLCGYQCSFAKESFSARLQSLQDTE-----STNLYISNLPLHWN 396
Query: 238 TKLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQYN 285
+ +F ++L ++ + +GF ++ A++ I ++N
Sbjct: 397 ESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFN 444
>Hs4758542 [R] KOG0118 FOG: RRM domain
Length = 284
Score = 53.1 bits (126), Expect = 2e-06
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 128 QTNTMKSEKQTA-LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNF 186
Q N K+E+ +F+G L + ++ L + F KF I +D NT +S G+G++ F
Sbjct: 57 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 116
Query: 187 GDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNL-PLDNTKLTTRVF 245
D E +D+ + + GR I ++ +K+ +F L P T+ R +
Sbjct: 117 KDAASVEKVLDQKEHR-LDGRVIDPKKAMA---MKKDPVKKIFVGGLNPESPTEEKIREY 172
Query: 246 YDEFKKFGKI---LSCKLDRRKNIGFIYFENDAAAKEAIKQ 283
+ EF + I + KL++R+ FI F+ + K+ +++
Sbjct: 173 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 213
>Hs14110404 [R] KOG0118 FOG: RRM domain
Length = 331
Score = 53.1 bits (126), Expect = 2e-06
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 128 QTNTMKSEKQTA-LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNF 186
Q N K+E+ +F+G L + ++ L + F KF I +D NT +S G+G++ F
Sbjct: 57 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 116
Query: 187 GDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNL-PLDNTKLTTRVF 245
D E +D+ + + GR I ++ +K+ +F L P T+ R +
Sbjct: 117 KDAASVEKVLDQKEHR-LDGRVIDPKKAMA---MKKDPVKKIFVGGLNPESPTEEKIREY 172
Query: 246 YDEFKKFGKI---LSCKLDRRKNIGFIYFENDAAAKEAIKQ 283
+ EF + I + KL++R+ FI F+ + K+ +++
Sbjct: 173 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 213
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 52.8 bits (125), Expect = 2e-06
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 131 TMKSEKQTAL------FIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYL 184
+M +++Q AL ++G + + ED + F F S+ + DS T K G+ ++
Sbjct: 116 SMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFV 175
Query: 185 NFGDPKDAENAVDEYNYMPIFGREIRM---------MPSLRNTYFRKNIGTNVFFSNLPL 235
+ P+ A+ A+++ N + + GR I++ P + ++ +++
Sbjct: 176 EYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ 235
Query: 236 DNTKLTTRVFYDEFKKFGKILSCKLDR------RKNIGFIYFENDAAAKEAIKQYN 285
D L+ F+ FGKI SC L R K GFI +E ++++A+ N
Sbjct: 236 D---LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 288
>CE17059 [R] KOG0118 FOG: RRM domain
Length = 346
Score = 52.8 bits (125), Expect = 2e-06
Identities = 35/160 (21%), Positives = 76/160 (46%), Gaps = 8/160 (5%)
Query: 131 TMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPK 190
+++ E +F+G L N T+D++ +++F + + D TK+S G+G++ F
Sbjct: 16 SLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKT 75
Query: 191 DAENAVDEYNYMPIFGREI---RMMPSLRNTYFRKNIGT-NVFFSNLPLDNTK-LTTRVF 245
+ + A+ + ++ I G+ + R +P N+ T ++ S + D+T+ + T F
Sbjct: 76 EVDAAMKQRPHI-IDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYF 134
Query: 246 --YDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIKQ 283
Y K IL + + GF+ F++ + + + Q
Sbjct: 135 TKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 52.8 bits (125), Expect = 2e-06
Identities = 26/75 (34%), Positives = 46/75 (60%)
Query: 137 QTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAV 196
Q ++F+G++ +V+ED + +IF+K + S+K+ D T K GYG++ F D + AE A+
Sbjct: 17 QRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAI 76
Query: 197 DEYNYMPIFGREIRM 211
N + GR +R+
Sbjct: 77 RNLNGYELSGRILRV 91
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 52.0 bits (123), Expect = 3e-06
Identities = 46/199 (23%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query: 125 STQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYL 184
ST + S ++I +L ++ +++ F+ F + + + D + S GYG++
Sbjct: 100 STGGSGGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGN-SRGYGFV 158
Query: 185 NFGDPKDAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNT--KLTT 242
+F + A A+++ N M +++ ++ + + T+ F NL + N + T
Sbjct: 159 HFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATH--FKNLYVKNLSEEFTE 216
Query: 243 RVFYDEFKKFGKILSCKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCG 297
+ + F+ +G+I S KL R + GF+ +EN +A A+ +GK+ D+ +
Sbjct: 217 QHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFL-- 274
Query: 298 VHFDRNVRKSPEFEQKINR 316
+ R + K+ E +Q+INR
Sbjct: 275 -YVARALSKA-ERQQEINR 291
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 51.6 bits (122), Expect = 4e-06
Identities = 42/164 (25%), Positives = 74/164 (44%), Gaps = 7/164 (4%)
Query: 121 NSKHSTQQTNTMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLG 180
N + + +T E +T L + +L + TE+ L +F K +K+ + N K S G
Sbjct: 470 NQDYRGGKNSTWSGESKT-LVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGK-SKG 524
Query: 181 YGYLNFGDPKDAENAVDEYNYMPIFGREIR--MMPSLRNTYFRKNIGTNVFFSNLPLDNT 238
Y ++ F +DA+ A++ N I GR IR + + R +F L D T
Sbjct: 525 YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTT 584
Query: 239 KLTTRVFYDEFKKFGKILSCKLDRRKNIGFIYFENDAAAKEAIK 282
+ T + +D + + + K GF+ F ++ AKEA++
Sbjct: 585 EETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKEAME 628
>Hs4506899 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 221
Score = 51.6 bits (122), Expect = 4e-06
Identities = 26/77 (33%), Positives = 44/77 (56%)
Query: 135 EKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAEN 194
E T+L + +L + D L +F K++ V I D TK+S G+ ++ F D +DAE+
Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYRRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 195 AVDEYNYMPIFGREIRM 211
A+D + + GRE+R+
Sbjct: 71 AMDAMDGAVLDGRELRV 87
>At5g19030 [R] KOG0118 FOG: RRM domain
Length = 145
Score = 51.6 bits (122), Expect = 4e-06
Identities = 23/63 (36%), Positives = 40/63 (62%)
Query: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
++LF+ +V+E L +F++F +VKI + T++SLGYGY+ F +DA++AV+
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 198 EYN 200
N
Sbjct: 137 AMN 139
>At1g17370 [R] KOG0118 FOG: RRM domain
Length = 419
Score = 51.6 bits (122), Expect = 4e-06
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 140 LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVDEY 199
+F+GDL VT+ ML F+ + + + ++ D T +S G+G+++F + +DA+ A+DE
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 200 NYMPIFGREIR 210
+ R+IR
Sbjct: 201 TGKWLGSRQIR 211
>7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 637
Score = 51.6 bits (122), Expect = 4e-06
Identities = 46/185 (24%), Positives = 80/185 (42%), Gaps = 26/185 (14%)
Query: 124 HSTQQTNTMKSE--KQTAL------FIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNT 175
H QQ T +++ +Q AL ++G + + ED + F F S+ + D T
Sbjct: 108 HQQQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPIT 167
Query: 176 KKSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRM-----MPS----LRNTYFRKNIGT 226
+K G+ ++ + P+ A+ A+++ N + GR I++ MP +
Sbjct: 168 QKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFN 227
Query: 227 NVFFSNLPLDNTKLTTRVFYDEFKKFGKILSCKLDR------RKNIGFIYFENDAAAKEA 280
++ +++ D L+ F+ FG IL CKL + K GFI + N A EA
Sbjct: 228 RIYVASIHPD---LSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEA 284
Query: 281 IKQYN 285
I N
Sbjct: 285 IASMN 289
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 50.8 bits (120), Expect = 8e-06
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 118 NLSNSKHSTQQTNTMKSEKQTA-LFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTK 176
++S+S H Q T S ++ LFIG L +V E L + F+ F V+I D +
Sbjct: 20 SISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSG 79
Query: 177 KSLGYGYLNFGDPKDAENAVDEYNYMPIFGREIRM 211
+S G+G+++F + DA +A D + + GR +R+
Sbjct: 80 RSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRI 114
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,273,893
Number of Sequences: 60738
Number of extensions: 1948110
Number of successful extensions: 6182
Number of sequences better than 1.0e-05: 96
Number of HSP's better than 0.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 5673
Number of HSP's gapped (non-prelim): 320
length of query: 766
length of database: 30,389,216
effective HSP length: 114
effective length of query: 652
effective length of database: 23,465,084
effective search space: 15299234768
effective search space used: 15299234768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)