ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2267 good R KOG1273 General function prediction only WD40 repeat protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2267 770989 772305 439
(439 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YAR003w [R] KOG1273 WD40 repeat protein 463 e-130
SPAC23H3.05c [R] KOG1273 WD40 repeat protein 218 2e-56
Hs4826970 [R] KOG1273 WD40 repeat protein 157 4e-38
CE29277 [R] KOG1273 WD40 repeat protein 137 3e-32
At3g21060 [R] KOG1273 WD40 repeat protein 127 3e-29
7296283 [R] KOG1273 WD40 repeat protein 64 6e-10
SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein 62 2e-09
7293660 [R] KOG1273 WD40 repeat protein 55 2e-07
CE05372 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (... 54 6e-07
Hs9257257 [Z] KOG0318 WD40 repeat stress protein/actin interacti... 53 1e-06
Hs4827056 [Z] KOG0318 WD40 repeat stress protein/actin interacti... 53 1e-06
SPAC630.14c [R] KOG0266 WD40 repeat-containing protein 52 1e-06
At1g61210 [D] KOG0267 Microtubule severing protein katanin p80 s... 51 3e-06
>YAR003w [R] KOG1273 WD40 repeat protein
Length = 426
Score = 463 bits (1192), Expect = e-130
Identities = 228/433 (52%), Positives = 303/433 (69%), Gaps = 13/433 (3%)
Query: 3 NLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPI 62
N+LLQDPF VLKE+PEKLTHT+E P+ C++FSP GDYLA+GC+NGA++IYDMD+ +PI
Sbjct: 2 NILLQDPFAVLKEHPEKLTHTIENPLRTECLQFSPCGDYLALGCANGALVIYDMDTFRPI 61
Query: 63 AMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCH 122
+ G GAH R + S+ WS DGR L +S RDW KLWD+++P+K ++ +FD P+W C
Sbjct: 62 CVPGNMLGAHVRPITSIAWSPDGRLLLTSSRDWSIKLWDLSKPSKPLKEIRFDSPIWGCQ 121
Query: 123 VV--RWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQD-QDISGHGYTLVACPHPTIE 179
+ + +C+ T+ EE AYV+ ++ A E+ HGY LV H
Sbjct: 122 WLDAKRRLCVATIFEESDAYVIDFSNDPVASLLSKSDEKQLSSTPDHGYVLVCTVHTKHP 181
Query: 180 SIIITGTSKGWINAFQLDLESGFEDKIRCCYEEXXXXXXXXXXXXSPSGTRIAINGSDRT 239
+III GTSKGW++ ++ S ++ + C + S +G R+AIN SDRT
Sbjct: 182 NIIIVGTSKGWLDFYKF--HSLYQTE--CIHSLKITSSNIKHLIVSQNGERLAINCSDRT 237
Query: 240 IRQYQLIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSA 299
IRQY++ ++D S +V + LEHKYQD+IN+LQWN I FSN++ EYLVAS HGSSA
Sbjct: 238 IRQYEISIDDENS------AVELTLEHKYQDVINKLQWNCILFSNNTAEYLVASTHGSSA 291
Query: 300 HDLYLWETSSGSLVRVLEGADEELLDIDWNFYSMRIASNGFESGWVYMWSIVIPPKWSAL 359
H+LY+WET+SG+LVRVLEGA+EEL+DI+W+FYSM I SNGFESG VY+WS+VIPPKWSAL
Sbjct: 292 HELYIWETTSGTLVRVLEGAEEELIDINWDFYSMSIVSNGFESGNVYVWSVVIPPKWSAL 351
Query: 360 APDFEEVEENIDYQEKENEFDIMDDDNNLQAMTEAEEIAIDLCTPEKYDVRGNDISMPSF 419
APDFEEVEEN+DY EKE+EFD +D+ Q + + EEIAIDL T E+YDVRGN++ + F
Sbjct: 352 APDFEEVEENVDYLEKEDEFDEVDEAEQQQGLEQEEEIAIDLRTREQYDVRGNNLLVERF 411
Query: 420 VIPIDYEGVIIQQ 432
IP DY +I Q
Sbjct: 412 TIPTDYTRIIKMQ 424
>SPAC23H3.05c [R] KOG1273 WD40 repeat protein
Length = 398
Score = 218 bits (554), Expect = 2e-56
Identities = 140/391 (35%), Positives = 210/391 (52%), Gaps = 39/391 (9%)
Query: 3 NLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPI 62
NL L DPF + +YPE LT TL+ A ++FS G +LA G NG+++I+D+ +
Sbjct: 2 NLELLDPFSI-PDYPEALTTTLKHG-HATSIRFSTNGYHLASGLVNGSVVIWDLSTFSVS 59
Query: 63 AMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSC- 121
+L HTR++QSVCWS+ R+L ++ RDW LWD+ + +Q P+WS
Sbjct: 60 RVLT----GHTRAIQSVCWSSCDRFLLTASRDWKCILWDLRDGSIVYQVV-LSAPVWSAS 114
Query: 122 -HVVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQDQDIS-------GHGYTLVAC 173
H + N + ++++E L + D H + D D + TLV+
Sbjct: 115 LHPHKINTFVASLLDESPQ--LIIVDDGIPKHKYLPTNPDIDENYSDRRNRSKHVTLVSF 172
Query: 174 PHPTIESIIITGTSKGWINAFQLDLESGFEDKIRCCYEEXXXXXXXXXXXXSPSGTRIAI 233
HP+ E I++GTSKGW + KIR + S +
Sbjct: 173 FHPSGE-YILSGTSKGWFHVIDASTT-----KIRSSHR--ITSQSIKQIRLSFCKRFLIF 224
Query: 234 NGSDRTIRQYQLIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVAS 293
N +DR IR + DN E+EHK+QD++NRLQWN+ FS +GE++ A+
Sbjct: 225 NSTDRVIRTVSIQDLDNP-----------EVEHKFQDVVNRLQWNSCGFSQ-TGEFVFAT 272
Query: 294 AHGSSAHDLYLWETSSGSLVRVLEGADEELLDIDWNFYSMRIASNGFESGWVYMWSIVIP 353
+ AH +Y+WE GSLV++LEG EEL+D+DW+ +AS G +SG +Y+W++
Sbjct: 273 TY-QMAHAIYVWERGMGSLVKILEGPKEELVDVDWHPVFPCVASVGLDSGSIYIWAVEQK 331
Query: 354 PKWSALAPDFEEVEENIDYQEKENEFDIMDD 384
WSA APDF+E+EENI+Y+E E+EFDI D+
Sbjct: 332 ESWSAFAPDFQELEENIEYEEPEDEFDIHDE 362
>Hs4826970 [R] KOG1273 WD40 repeat protein
Length = 538
Score = 157 bits (396), Expect = 4e-38
Identities = 132/416 (31%), Positives = 196/416 (46%), Gaps = 41/416 (9%)
Query: 3 NLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPI 62
NL L + FG + YPE+ TL+ A+ F+ G LAVGC++G I+I+D + + I
Sbjct: 2 NLELLESFG--QNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLT-RGI 58
Query: 63 AMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSC- 121
A + AH V S+CWS DG L S+ D WD+ C Q+++F P+
Sbjct: 59 AKI---ISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGD-CDQRFRFPSPILKVQ 114
Query: 122 -HVVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQDQDISGHGYTLVACPHPTIES 180
H N +V ++ +LTL+D + H ++ D D++ V
Sbjct: 115 YHPRDQNKVLVCPMKSAPV-MLTLSDSK---HVVLPVDDDSDLN------VVASFDRRGE 164
Query: 181 IIITGTSKGWINAFQLDLESGFEDKIRCCYEEXXXXXXXXXXXX--SPSGTRIAINGSDR 238
I TG +KG I L L++ +D + + G+ IN +DR
Sbjct: 165 YIYTGNAKGKI----LVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADR 220
Query: 239 TIRQYQLIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSS 298
IR Y D E + QD++NR W FS GEY+VA + +
Sbjct: 221 IIRVY-----DGREILTCGRDGEPEPMQELQDLVNRTPWKKCCFSG-DGEYIVAGS--AR 272
Query: 299 AHDLYLWETSSGSLVRVLEGADEELL-DIDWNFYSMRIASNGFESGWVYMWSIVIPPKWS 357
H LY+WE S G+LV++L G ELL D+ W+ IAS SG V +W+ WS
Sbjct: 273 QHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIAS--ISSGVVSIWAQNQVENWS 330
Query: 358 ALAPDFEEVEENIDYQEKENEFDIMDDDNNLQAMTEAEEIAIDLCTPEKYDVRGND 413
A APDF+E++EN++Y+E+E+ FDI D+D +E E+ D E+ DV D
Sbjct: 331 AFAPDFKELDENVEYEERESGFDIEDEDK-----SEPEQTGADAAEDEEVDVTSVD 381
>CE29277 [R] KOG1273 WD40 repeat protein
Length = 480
Score = 137 bits (345), Expect = 3e-32
Identities = 119/409 (29%), Positives = 189/409 (46%), Gaps = 52/409 (12%)
Query: 15 EYPEKLTHTLEVPVAAV-CVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHT 73
++PE+L L++ A+ C KF+ G +AVGC++G ++IYD + + AH
Sbjct: 12 QFPEELECHLDLQNASANCCKFNRWGSIVAVGCTDGRVLIYDFMTRN----IARTFSAHC 67
Query: 74 RSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCHVVRWNVCIVTV 133
V + WS DGR L +S D ++D+ T H +R+N +
Sbjct: 68 LPVSCLSWSRDGRKLLTSSADNSIAMFDVLAGTLL-------------HRIRFNSMVTFA 114
Query: 134 VEEPT----AYVLTLTDRQNAFHCFPLLEQ--DQDISGHGYTLVAC-PHPTIESIIITGT 186
+ P A VL + + P ++ D G +C + II GT
Sbjct: 115 MFHPRNDNKAIVLQVNKQPTVEQFSPRIQTVLANDTPGSSDESASCVSYDRKGKYIIAGT 174
Query: 187 SKGWINAFQLDLESGFEDKIRCCYEEXXXXXXXXXXXXSPSGTRIAI-NGSDRTIRQYQL 245
KG + + + ++C P +R I N DR IR Y+L
Sbjct: 175 GKGKLLIYNAET-------LKCVAWCKQNTVQQIRQIIVPMKSRFIITNTQDRVIRTYEL 227
Query: 246 IVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSAHDLYLW 305
ED + G +E ++K D++N+ W + ++ G Y+ ++ + AH LY+W
Sbjct: 228 --EDLLHQRGQM----VEAKYKVLDMVNKAAWKNVC-TDSDGLYVCGAS--TKAHSLYIW 278
Query: 306 ETSSGSLVRVLEG-ADEELLDIDWNFYSMRIASNGFESGWVYMWSIVIPPKWSALAPDFE 364
E+++GSL+++L G E LLD+ W+ I S G V MW+ WSA AP+F+
Sbjct: 279 ESNTGSLIKILHGNKGEALLDVQWHPTRPIILS--IAQGTVSMWTQAHVENWSAFAPEFQ 336
Query: 365 EVEENIDYQEKENEFDIMDDDNNLQAMT----EAEEIAIDLCT--PEKY 407
E+EEN Y EKENEFD+ D+D + + MT +AE+ ID+ PE Y
Sbjct: 337 ELEENEKYIEKENEFDMEDEDAD-EDMTSKSQDAEDDIIDVVNVRPEDY 384
>At3g21060 [R] KOG1273 WD40 repeat protein
Length = 474
Score = 127 bits (319), Expect = 3e-29
Identities = 108/417 (25%), Positives = 187/417 (43%), Gaps = 31/417 (7%)
Query: 15 EYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTR 74
++PE + LE V CV F+ RG LA GC++G +I+D ++ + IA +
Sbjct: 12 DFPEVIEEYLEHGVIK-CVAFNHRGSLLAAGCADGGCVIWDFET-RGIAK-EIRDNDCSA 68
Query: 75 SVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWS-------------- 120
++ SV WS G L S D LWD++ K + PL +
Sbjct: 69 AITSVSWSKYGHRLLVSAADKSLTLWDVSTGEKIARTILQQTPLQARLNPGLSSPSLCLA 128
Query: 121 CHVVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQDQDISGHGYTLVACPHPTIES 180
C + + + ++ T +++ + + P S ++ A
Sbjct: 129 CPLSSAPMIVDFDIDCTTLLPVSVPEMPDVLA--PPQRSKCPESNPPFSPAAACFNKCGD 186
Query: 181 IIITGTSKGWINAFQLDLESGFEDKIRCCYEEXXXXXXXXXXXXSPSGTRIAINGSDRTI 240
++ G SKG I L ++ S +G + N DRTI
Sbjct: 187 LVYIGNSKGEI------LIVDYKSVRVLALVSASGAAPVKNIVFSRNGQYLLTNSHDRTI 240
Query: 241 RQYQ-LIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSA 299
R Y+ L+ N+ + S +++ E +QD + ++ W FS GE++V +
Sbjct: 241 RIYENLLPAKNKMKTVGSKCLTLFRE--FQDSVTKMHWKAPCFSG-DGEWVVGGSACKGE 297
Query: 300 HDLYLWETSSGSLVRVLEGADEELLDIDWNFYSMRIASNGFESGWVYMWSIVIPPKWSAL 359
H +Y+W+ + G LV++LEG E L+D+ W+ I S +G VY+W+ WSA
Sbjct: 298 HKIYIWDRA-GHLVKILEGPKEALIDLAWHPVHPIIVSVSL-AGLVYIWAKDYTENWSAF 355
Query: 360 APDFEEVEENIDYQEKENEFDIMDDDNNLQAMTEAEEIAIDLCTPEKYDVRGNDISM 416
APDF+E+EEN +Y E+E+EFD++ + ++ + E+ +D+ T EK +D+S+
Sbjct: 356 APDFKELEENEEYVEREDEFDLIPETEKVKVLDVNEDEEVDIDTVEKDAFSDSDMSV 412
>7296283 [R] KOG1273 WD40 repeat protein
Length = 305
Score = 63.5 bits (153), Expect = 6e-10
Identities = 73/275 (26%), Positives = 111/275 (39%), Gaps = 29/275 (10%)
Query: 3 NLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPI 62
NL L + FG + YPE+ +L+ AV F+ G LAVGC++G I+I+D + I
Sbjct: 2 NLELLESFG--QNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVIWDF-LTRGI 58
Query: 63 AMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCH 122
A + AH V S+ W+ +G L S+ D +WD+ + +Y+F P+
Sbjct: 59 AKI---ISAHVHPVCSLSWTRNGHKLLSASTDNNVCIWDVL-TGELEHKYRFPSPVLKVQ 114
Query: 123 VVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQDQDISGHGYTLVACPHPTIESII 182
N + V P Y L + C P L+ D D++ + I
Sbjct: 115 FDPRNDNRLLVC--PMRYAAVLVEVGGTHRCLP-LDSDGDLN------IVASFDRRGKHI 165
Query: 183 ITGTSKGWINAFQLDLESGFEDKIRCCYEEXXXXXXXXXXXXSPSGTRIAINGSDRTIRQ 242
TG +KG I LD+E+ + G IN SDR IR
Sbjct: 166 YTGNAKGKI--LVLDVETFEVVASFRIIVGTSSATAVKSIEFARRGDAFLINTSDRVIRV 223
Query: 243 Y---QLIVEDNESEGGSSHSVSIELEHKYQDIINR 274
Y ++I + E E K QD++N+
Sbjct: 224 YDSKEIITLGKDGEP--------EPIQKLQDLVNK 250
>SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein
Length = 614
Score = 61.6 bits (148), Expect = 2e-09
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 20 LTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRS--VQ 77
L HTLE P CVKFS G YLA GC N A ++D+ + K + L S +R V+
Sbjct: 306 LVHTLEHPSVVCCVKFSNNGKYLATGC-NQAANVFDVQTGKKLFTLHEESPDPSRDLYVR 364
Query: 78 SVCWSNDGRYLWSSGRDWYAKLWDMT 103
++ +S DG+YL + D KLWD++
Sbjct: 365 TIAFSPDGKYLVTGTEDRQIKLWDLS 390
>7293660 [R] KOG1273 WD40 repeat protein
Length = 211
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 228 GTRIAINGSDRTIRQY---QLIVEDNESEGGSSHSVSIELEHKYQDIINRLQWNTIFFSN 284
G IN SDR IR Y ++I+ + E E K QD++N+ W FS
Sbjct: 82 GDAFLINTSDRVIRVYDSKEIIILGKDGEP--------EPIQKLQDLVNKTTWKKCCFSG 133
Query: 285 HSGEYLVASAHGSSAHDLYLWETSSGSLVRVLEGADEEL 323
GEY+ A + + H LY+WE S G+LV++L G EL
Sbjct: 134 -DGEYICAGS--ARQHALYIWEKSIGNLVKILHGTKGEL 169
>CE05372 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 496
Score = 53.5 bits (127), Expect = 6e-07
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 3 NLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPI 62
+L + P G L+++P++++ V F P G +LA C + +YD+ + K +
Sbjct: 282 SLSQESPIGELEQHPQRVSK----------VAFHPNGHHLATACFDSTWRMYDLTTKKEL 331
Query: 63 AMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCH 122
+ H++SV V + DG + G D Y ++WDM + +C DG H
Sbjct: 332 L----YQEGHSKSVADVAFHPDGSVALTGGHDCYGRVWDM-RTGRCIM--FLDGHTKEIH 384
Query: 123 VVRW 126
V W
Sbjct: 385 SVEW 388
>Hs9257257 [Z] KOG0318 WD40 repeat stress protein/actin interacting protein
Length = 606
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 32 CVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRSVQSVCWSNDGRYLWSS 91
CV+FSP G+ A ++G I IYD + + + LG S AH + ++ WS D +L S+
Sbjct: 194 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCALG-GSKAHDGGIYAISWSPDSTHLLSA 252
Query: 92 GRDWYAKLWDMT 103
D +K+WD++
Sbjct: 253 SGDKTSKIWDVS 264
>Hs4827056 [Z] KOG0318 WD40 repeat stress protein/actin interacting protein
Length = 534
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 32 CVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRSVQSVCWSNDGRYLWSS 91
CV+FSP G+ A ++G I IYD + + + LG S AH + ++ WS D +L S+
Sbjct: 194 CVRFSPDGNRFATASADGQIYIYDGKTGEKVCALG-GSKAHDGGIYAISWSPDSTHLLSA 252
Query: 92 GRDWYAKLWDMT 103
D +K+WD++
Sbjct: 253 SGDKTSKIWDVS 264
>SPAC630.14c [R] KOG0266 WD40 repeat-containing protein
Length = 586
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 19 KLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRS--V 76
+L HTLE V+FS G +LA GC N A +++++++ K I +L S V
Sbjct: 279 QLLHTLEHTSVICYVRFSADGKFLATGC-NRAAMVFNVETGKLITLLQEESSKREGDLYV 337
Query: 77 QSVCWSNDGRYLWSSGRDWYAKLWDMTQ 104
+SV +S DG+YL + D ++WD+ Q
Sbjct: 338 RSVAFSPDGKYLATGVEDQQIRIWDIAQ 365
>At1g61210 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 282
Score = 51.2 bits (121), Expect = 3e-06
Identities = 30/89 (33%), Positives = 54/89 (59%), Gaps = 6/89 (6%)
Query: 33 VKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRSVQSVCWSNDGRYLWSSG 92
V+F P G++LA G S+ + I+D ++ + T+ G H+R + ++ ++ DGR++ S G
Sbjct: 136 VEFHPFGEFLASGSSDANLKIWD---IRKKGCIQTYKG-HSRGISTIRFTPDGRWVVSGG 191
Query: 93 RDWYAKLWDMTQPTKCFQQYKF-DGPLWS 120
D K+WD+T K ++KF +GP+ S
Sbjct: 192 LDNVVKVWDLT-AGKLLHEFKFHEGPIRS 219
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,751,363
Number of Sequences: 60738
Number of extensions: 1279176
Number of successful extensions: 5333
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5265
Number of HSP's gapped (non-prelim): 39
length of query: 439
length of database: 30,389,216
effective HSP length: 109
effective length of query: 330
effective length of database: 23,768,774
effective search space: 7843695420
effective search space used: 7843695420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)