ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2281 good L KOG0851 Replication, recombination and repair Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2281 776507 774645 -621
(621 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YAR007c [L] KOG0851 Single-stranded DNA-binding replication prot... 735 0.0
SPBC660.13c [L] KOG0851 Single-stranded DNA-binding replication ... 390 e-108
7299004 [L] KOG0851 Single-stranded DNA-binding replication prot... 322 8e-88
Hs4506583 [L] KOG0851 Single-stranded DNA-binding replication pr... 320 5e-87
At2g06510 [L] KOG0851 Single-stranded DNA-binding replication pr... 295 1e-79
At4g19130 [L] KOG0851 Single-stranded DNA-binding replication pr... 291 3e-78
At5g45400 [L] KOG0851 Single-stranded DNA-binding replication pr... 290 6e-78
ECU10g0600 [L] KOG0851 Single-stranded DNA-binding replication p... 251 2e-66
At5g08020 [L] KOG0851 Single-stranded DNA-binding replication pr... 247 3e-65
At5g61000 [L] KOG0851 Single-stranded DNA-binding replication pr... 244 4e-64
CE04405 [L] KOG0851 Single-stranded DNA-binding replication prot... 230 6e-60
At1g52950 [L] KOG0851 Single-stranded DNA-binding replication pr... 85 3e-16
At1g35920 [L] KOG0851 Single-stranded DNA-binding replication pr... 65 4e-10
7299003 [L] KOG0851 Single-stranded DNA-binding replication prot... 64 7e-10
At2g07630 [L] KOG0851 Single-stranded DNA-binding replication pr... 58 5e-08
CE02842 [L] KOG0851 Single-stranded DNA-binding replication prot... 56 2e-07
>YAR007c [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 621
Score = 735 bits (1897), Expect = 0.0
Identities = 368/628 (58%), Positives = 463/628 (73%), Gaps = 21/628 (3%)
Query: 3 VQLLEGDLLDIFRIPERYNNPTGGIYQVVQTKKTE--TNAKKNLILINDGKYHVKALLRN 60
VQL GD IF +RY+NPTGG+YQV T+K++ + +KNLI+I+DG YH+KALLRN
Sbjct: 4 VQLSRGDFHSIFTNKQRYDNPTGGVYQVYNTRKSDGANSNRKNLIMISDGIYHMKALLRN 63
Query: 61 KXXXXXXXXXLERGDVFKVLNAECAVIKEKKKFVLLVDEIEIVSRGLDLFNNATEFVDAY 120
+ L+RGD+ +V+ AE A+++E+KK+VLLVD+ E+V D+ N + F+D Y
Sbjct: 64 QAASKFQSMELQRGDIIRVIIAEPAIVRERKKYVLLVDDFELVQSRADMVNQTSTFLDNY 123
Query: 121 LGEHMNELVT---LTDNGAVXXXXXXXXXXXXXXXXXXXXXXXXXNIPAPQPRSVPKAKS 177
EH NE + +TD+G V N+ A + K +
Sbjct: 124 FSEHPNETLKDEDITDSGNVANQTNASNAGVPDMLHSNS------NLNANER----KFAN 173
Query: 178 NNGSSQNSRPIFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSGEI 237
N +SQ +RPIFAIEQ+SPYQN WTIKARVS+KG++K W N RG+G + NVN LD+SGEI
Sbjct: 174 ENPNSQKTRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEI 233
Query: 238 RATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNED 297
RATAFND A KFNEILQEGK Y+VSKA++QPAKPQF+NL HPYEL+L+RD V+EEC +E
Sbjct: 234 RATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE- 292
Query: 298 ANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELAAKSGKKFDRRDVEIVDDS 357
++VP+ HFNFIKL+ + N E N+ +DV+GI++++ PHFEL +++GKKFDRRD+ IVDDS
Sbjct: 293 -SNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDITIVDDS 351
Query: 358 GACISLGLWGEQAIKFNLPEGSVVALKGVRVTDFNGKSLSMGNTSSLFANPDIQEAYTLK 417
G IS+GLW +QA+ FNLPEGSV A+KGVRVTDF GKSLSMG +S+L NP+I EAY LK
Sbjct: 352 GFSISVGLWNQQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALK 411
Query: 418 GWYDANASNTTFKALKTESGGG----ADTSKFIADRTTIARAIESNLGRSEKGDYFSVKA 473
GWYD+ N F LK E G G A +KFIA R TIARA NLGRSEKGD+FSVKA
Sbjct: 412 GWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKA 471
Query: 474 AVSFLKVDNFAYPACLNEGCQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIMDQTGQ 533
A+SFLKVDNFAYPAC NE C KKV+ Q DGTWRCEKCD N+ P +RY+LTISI+D+T Q
Sbjct: 472 AISFLKVDNFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQ 531
Query: 534 IWLTLFNDQAEQLVGVSANELTELKENNNQAFVALTQKVQMNEYDFRIRAREDNYNNETR 593
+WLTLF+DQA+QL+GV AN L LKE + F +TQ +QMNEYDFRIRARED YN+++R
Sbjct: 532 LWLTLFDDQAKQLLGVDANTLMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYNDQSR 591
Query: 594 IRYTVANLHDLRWKAEADFLAAELLKAL 621
IRYTVANLH L ++AEAD+LA EL KAL
Sbjct: 592 IRYTVANLHSLNYRAEADYLADELSKAL 619
>SPBC660.13c [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 609
Score = 390 bits (1003), Expect = e-108
Identities = 220/608 (36%), Positives = 341/608 (55%), Gaps = 27/608 (4%)
Query: 11 LDIFRIPERYNNPTGGIYQVVQTKKTETNA-----KKNLILINDGKYHVKALLRNKXXXX 65
L I + + P I QV+ K+ +N K+ ++++D + +++L +
Sbjct: 10 LRIINTSDASSFPPNPILQVLTVKELNSNPTSGAPKRYRVVLSDSINYAQSMLSTQLNHL 69
Query: 66 XXXXXLERGDVFKVLNAECAVIKEKKKFVLLVDEIEIVSRGLDLFNNAT--EFVDAYLGE 123
L++G ++ V+KE+K ++L + +D N E VDA L +
Sbjct: 70 VAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGLETVDA-LRQ 128
Query: 124 HMNELVTLTDNGAVXXXXXXXXXXXXXXXXXXXXXXXXXNIPAPQPRSVPKAKSNNGSSQ 183
NE N A N A P P K +
Sbjct: 129 QQNE-----QNNA---------SAPRTGISTSTNSFYGNNAAATAPAPPPMMKKPAAPNS 174
Query: 184 NSRPIFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSGEIRATAFN 243
S I+ IE +SPYQN WTI+ARV+ K ++K W N RGEG + +VNLLD SGEIRAT FN
Sbjct: 175 LSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGEIRATGFN 234
Query: 244 DNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPE 303
D F +ILQEG Y++S+ RV AK Q++N+++ YEL ERD + + ED VP
Sbjct: 235 DQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA--EDQTAVPV 292
Query: 304 MHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELAAK-SGKKFDRRDVEIVDDSGACIS 362
F+F+ L +V +V K+ IDV+G+L++VGP ++ ++ + + FD+RD+ IVD +G +
Sbjct: 293 AKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMR 352
Query: 363 LGLWGEQAIKFNLPEGSVVALKGVRVTDFNGKSLSMGNTSSLFANPDIQEAYTLKGWYDA 422
+ LWG+ AI+F++ E S++A KGV+V DF G+SLSM +S++ +PDIQE++ LKGWYD
Sbjct: 353 VTLWGKTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDG 412
Query: 423 NASNTTFKALKTESGGGADTSKFIADRTTIARAIESNLGRSEKGDYFSVKAAVSFLKVDN 482
F S + T + A+R IA +LG SE DYFS+K + +++ N
Sbjct: 413 QGRGQEFAKHSVISSTLSTTGR-SAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKN 471
Query: 483 FAYPACLNEGCQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQ 542
+YPAC C KKV Q G+WRCEKC+ + P+YRY++TI++ D TGQ+WL +F+D
Sbjct: 472 VSYPACPAADCNKKVFDQG-GSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDV 530
Query: 543 AEQLVGVSANELTELKENNNQAFVALTQKVQMNEYDFRIRAREDNYNNETRIRYTVANLH 602
+ ++ +A+EL +L+EN+ AF+ + Y F+ RA++DN+ E R+RYTV +++
Sbjct: 531 GKLIMHKTADELNDLQENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSIN 590
Query: 603 DLRWKAEA 610
+ WK E+
Sbjct: 591 QMDWKEES 598
>7299004 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 603
Score = 322 bits (826), Expect = 8e-88
Identities = 194/605 (32%), Positives = 319/605 (52%), Gaps = 49/605 (8%)
Query: 27 IYQVVQTKKTETNA--KKNLILINDGKY-HVKALLRNKXXXXXXXXXLERGDVFKVLNAE 83
+ Q++ KK + A ++ ILI+DGKY + A+L ++ LE + ++
Sbjct: 24 VLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYV 83
Query: 84 CAVIKEKK--KFVLLVDEIEIVSRGLDLFNNATEFVDAYLGEHMNELV---TLTDNGAVX 138
+++ + K VL++ E+ +V+ G ++ + E V Y +L +T N
Sbjct: 84 TSLVGKDGAGKRVLIISELTVVNPGAEVKSKIGEPV-TYENAAKQDLAPKPAVTSNSK-- 140
Query: 139 XXXXXXXXXXXXXXXXXXXXXXXXNIPAPQPRSVPKAKSNNG----SSQNSRPIFAIEQI 194
P + P +NN SS NS I +
Sbjct: 141 ----------------------------PIAKKEPSHNNNNNIVMNSSINSGMTHPISSL 172
Query: 195 SPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSGEIRATAFNDNAIKFNEILQ 254
SPYQN W IKARV+ K ++ W N RGEG + +++L+D SGEIRATAF + KF +++Q
Sbjct: 173 SPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQ 232
Query: 255 EGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPEMHFNFIKLNDV 314
Y++SK +++PA Q+S+L + YE++ + VV+ C + D + +PE+ +N + ++DV
Sbjct: 233 VDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDV 292
Query: 315 NNVEKNTAIDVVGILKSVGPHFELAAK-SGKKFDRRDVEIVDDSGACISLGLWGEQAIKF 373
+ +E A+D +GI K VG A+ + K+F +RD+ +VD S + ISL LWG+ A+ F
Sbjct: 293 SGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNF 352
Query: 374 NLPEGSVVALKGVRVTDFN-GKSLSMGNTSSLFANPDIQEAYTLKGWYDANASNTTFKAL 432
+ V+ +KG R+ +FN GKSLS+G S + NPDI EA+ L+GW+D ++ +
Sbjct: 353 DGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMV 412
Query: 433 KTESGGGADTSKFIADRTTIARAIESNLGRSEKGDYFSVKAAVSFLKVDNFAYPACLNEG 492
+GGG+ F + T+ A NLG +K DYF KA V +K +N Y AC
Sbjct: 413 SARTGGGS----FSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSD 468
Query: 493 CQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSAN 552
C KKV+ + + +RCEKC+ P+ KYR ++ +SI D T W++ FN+ EQL+G ++
Sbjct: 469 CNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQ 528
Query: 553 ELTELKENNNQAFVALTQKVQMNEYDFRIRAREDNYNNETRIRYTVANLHDLRWKAEADF 612
E+ E EN+ + + + F++R + + Y + TR + TV ++ + K
Sbjct: 529 EVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKH 588
Query: 613 LAAEL 617
L EL
Sbjct: 589 LLKEL 593
>Hs4506583 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 616
Score = 320 bits (819), Expect = 5e-87
Identities = 164/439 (37%), Positives = 266/439 (60%), Gaps = 13/439 (2%)
Query: 173 PKAKSNNGSSQNSRPIFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLD 232
P +G +Q+ + I ++PYQ+ WTI ARV+ K ++ W N+RGEG + ++ L+D
Sbjct: 171 PSLSHTSGGTQSK--VVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD 228
Query: 233 SSGEIRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEE 292
SGEIRATAFN+ KF +++ K Y+ SK ++ A QF+ +K+ YE++ + V
Sbjct: 229 ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMP 288
Query: 293 CMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELAAKSG-KKFDRRDV 351
C ED + +P + F+F ++D+ N K++ +D++GI KS ++ +S ++ +R++
Sbjct: 289 C--EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNI 346
Query: 352 EIVDDSGACISLGLWGEQAIKFNLPEGSVVALKGVRVTDFNGKSLSMGNTSSLFANPDIQ 411
++D SG ++ LWGE A KF+ V+A+KG RV+DF G+SLS+ ++S++ ANPDI
Sbjct: 347 YLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIP 406
Query: 412 EAYTLKGWYDANAS---NTTFKALKTESGGGADTSKFIADRTTIARAIESNLGRSEKGDY 468
EAY L+GW+DA + LK+ GG++T+ T+ NLG+ +K DY
Sbjct: 407 EAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNW-----KTLYEVKSENLGQGDKPDY 461
Query: 469 FSVKAAVSFLKVDNFAYPACLNEGCQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIM 528
FS A V +L+ +N Y AC + C KKVI Q +G +RCEKCD P+ KYR +L+++I
Sbjct: 462 FSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIA 521
Query: 529 DQTGQIWLTLFNDQAEQLVGVSANELTELKENNNQAFVALTQKVQMNEYDFRIRAREDNY 588
D W+T F + AE ++G +A L ELK+ N QAF + Q + FR+R + + Y
Sbjct: 522 DFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETY 581
Query: 589 NNETRIRYTVANLHDLRWK 607
N+E+RI+ TV ++ + ++
Sbjct: 582 NDESRIKATVMDVKPVDYR 600
>At2g06510 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 640
Score = 295 bits (756), Expect = 1e-79
Identities = 177/618 (28%), Positives = 314/618 (50%), Gaps = 43/618 (6%)
Query: 34 KKTETNAKKNLILINDGKYHVKALLRNKXXXXXXXXXLERGDVFKVLNAECAVIKEKKKF 93
+ E + ++ LI+DG A++ + E+G + ++++ C+ +K +K
Sbjct: 34 RSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLI 93
Query: 94 VLLVDEIEIVSRGLDLFNNATEFVDAYLGEHMNELV-TLTDNGAVXXXXXXXXXXXXXXX 152
V+L +E + + + N T F GE E T + G +
Sbjct: 94 VVL--NMETIVQQSETIGNPTIF-----GETDTEAQKTFSGTGNIPPPNRVVFNEPMVQH 146
Query: 153 XXXXXXXXXXNI-----------PAPQPRSVPKAKSNNGSS--QNSRP--IFAIEQISPY 197
NI P+ QP P A N +N P + I ++PY
Sbjct: 147 SVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIAALNPY 206
Query: 198 QNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLD-SSGEIRATAFNDNAIKFNEILQEG 256
Q W IKARV+ KGD++++ N +G+G + + +LLD GEIR T FN +F ++ + G
Sbjct: 207 QGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVG 266
Query: 257 KAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPEMHFNFIKLNDVNN 316
K Y +SK ++PA+ F++LK+ +E+ LE VE C +ED + +P+ F+F ++D+ N
Sbjct: 267 KVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGS-IPKQQFSFRPISDIEN 325
Query: 317 VEKNTAIDVVGILKSVGPHFELAAKSGKKFDRRDVEIVDDSGACISLGLWGEQAIK---- 372
E NT +DV+G++ SV P + K+G + RR + + D+SG + + LWGE +
Sbjct: 326 AENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQ 385
Query: 373 ----FNLPEGSVVALKGVRVTDFNGKSLSMGNTSSLFANPDIQEAYTLKGWYDANASNT- 427
+ V+A+K +V+DF+GKS+ +++ LF NPD EA+ L+ W+D +T
Sbjct: 386 LEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTA 445
Query: 428 TFKALKTESGGGADTSKFIADRTTIARAIESNLGRSEKGDYFSVKAAVSFLKVDNFAYPA 487
+F + GG ++ R +++ E LGRS+K D+ +VKA +SF+K D+F Y A
Sbjct: 446 SFSISRDTMPGGVSRNEI---RKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTA 502
Query: 488 CL----NEGCQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQA 543
C ++ C KKV W C++C+ YRY+L + I D TG W+T F +
Sbjct: 503 CPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETG 562
Query: 544 EQLVGVSANELTELKE--NNNQAFVALTQKVQMNEYDFRIRAREDNYNNETRIRYTVANL 601
E+++G A +L +K + F + + ++Y +++ +E++Y +E R++ TV +
Sbjct: 563 EEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKV 622
Query: 602 HDLRWKAEADFLAAELLK 619
+ + +E+ ++ L++
Sbjct: 623 DKVNYTSESKYMLDLLVR 640
>At4g19130 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 785
Score = 291 bits (744), Expect = 3e-78
Identities = 157/460 (34%), Positives = 259/460 (56%), Gaps = 23/460 (5%)
Query: 168 QPRSVPKAKSNNGS-SQNSRP--IFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGH 224
QP+ P +N G ++N P I + +SPY WTIKARV+ K LK++ N RGEG
Sbjct: 206 QPQPPPPMYANRGPVARNEAPPKIIPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGK 265
Query: 225 ILNVNLLDSSG-EIRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELS 283
+ N +LLD+ G EIR T FN A +F + + G Y +S+ ++PA+ F++L++ YE+
Sbjct: 266 VFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIM 325
Query: 284 LERDCVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELAAKSG 343
L+ +++C EDA +P F+F + D+ ++E N +DV+GI+ S+ P + K+G
Sbjct: 326 LDNASTIKQCYEEDAA-IPRHQFHFRTIGDIESMENNCIVDVIGIVSSISPTVTITRKNG 384
Query: 344 KKFDRRDVEIVDDSGACISLGLWGE------QAIKFNLPEG--SVVALKGVRVTDFNGKS 395
+R +++ D SG + + +WG+ Q ++ G V+A+K R+++FNGK+
Sbjct: 385 TATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKT 444
Query: 396 LSMGNTSSLFANPDIQEAYTLKGWYDANASNTTFKALKTESGGGADTSKFIADRTTIARA 455
+S +S LF +PD EA LK W++ + +L E G R TI++
Sbjct: 445 VSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCISLSREFSGSGKVDV----RKTISQI 500
Query: 456 IESNLGRSEKGDYFSVKAAVSFLKVDNFAYPACL----NEGCQKKVIMQSDGTWRCEKCD 511
+ LG SEK D+ +V A + +LK DNF Y AC + C KKV DGTWRCEKCD
Sbjct: 501 KDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPCSKKVTDNGDGTWRCEKCD 560
Query: 512 MNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELK--ENNNQAFVALT 569
+ YRY+L + I D T +T F + E+++G+SA +L +K + + F +
Sbjct: 561 KSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDII 620
Query: 570 QKVQMNEYDFRIRAREDNYNNETRIRYTVANLHDLRWKAE 609
+KV +Y+F+++ +E+ +++E R++ TV + L + A+
Sbjct: 621 RKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSAD 660
>At5g45400 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 853
Score = 290 bits (741), Expect = 6e-78
Identities = 159/465 (34%), Positives = 250/465 (53%), Gaps = 23/465 (4%)
Query: 166 APQPRSVPKAKSNNGSSQNSRP--IFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEG 223
A QP+ P + ++N P I I ++PYQ WTIK RV+ K DL+++ N RGEG
Sbjct: 275 AYQPQQPPMYVNRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEG 334
Query: 224 HILNVNLLDSSG-EIRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYEL 282
+ + +LLD+ G EIR T FND +F + + G Y +S+ ++PA+ F++L + YE+
Sbjct: 335 KLFSFDLLDADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEI 394
Query: 283 SLERDCVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELAAKS 342
L+ ++ C ED +P HF+F + D+ N+E N+ DV+GI+ S+ P + K+
Sbjct: 395 HLDSASTIQPC--EDDGTIPRYHFHFRNIGDIENMENNSTTDVIGIVSSISPTVAIMRKN 452
Query: 343 GKKFDRRDVEIVDDSGACISLGLWGE------QAIKFNLPEG--SVVALKGVRVTDFNGK 394
+ +R +++ D SG + + +WG Q ++ G V+ALK R+ +FNGK
Sbjct: 453 LTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGK 512
Query: 395 SLSMGNTSSLFANPDIQEAYTLKGWYDANASNTTFKALKTESGGGADTSKFIADRTTIAR 454
+S S F PD EA L+ WY+ N F ++ E G R IA+
Sbjct: 513 QVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQEV----RKVIAQ 568
Query: 455 AIESNLGRSEKGDYFSVKAAVSFLKVDNFAYPACL----NEGCQKKVIMQSDGTWRCEKC 510
+ LG SEK D+ +V A +SF+KV+NF Y AC + C KKV DGTWRCEKC
Sbjct: 569 IKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKC 628
Query: 511 DMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELKENN--NQAFVAL 568
D YRY+L I + D T W T F + E+++G+SA +L +K N + F +
Sbjct: 629 DKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFEDI 688
Query: 569 TQKVQMNEYDFRIRAREDNYNNETRIRYTVANLHDLRWKAEADFL 613
+ V +Y F+++ +E+ Y++E R++ TV L + + F+
Sbjct: 689 IRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFM 733
>ECU10g0600 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 623
Score = 251 bits (642), Expect = 2e-66
Identities = 137/416 (32%), Positives = 230/416 (54%), Gaps = 25/416 (6%)
Query: 190 AIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSGEIRATAFNDNAIKF 249
AI ++P+ N W IK RV K D++++ N +GEG + N + D + +++ F+D F
Sbjct: 216 AINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEVSDGTAQVKIICFSDCVDIF 275
Query: 250 NEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPEMHFNFI 309
I++ GK Y ++K V+ A Q+S YE+ L++ V ++ + P+ FNF+
Sbjct: 276 FPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADDGS---PKYFFNFV 332
Query: 310 KLNDVNNVEKNTAIDVVGILKSV-GPHFELAAKSGKKFDRRDVEIVDDSGACISLGLWGE 368
K++D+ N D +G++K V P + + + +RD +VDD G+ + L LWG
Sbjct: 333 KISDLTL--GNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDGGS-VRLTLWGP 389
Query: 369 QAIKFNLPEGSVVALKGVRVTDFNGKSLSMGNTSSLFANPDIQEAYTLKGWYDANASNTT 428
+A + + G V+ALK ++V++FNG S+S S + NPDI EA+ L+GWY + +
Sbjct: 390 KA-ELEIESGMVLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELEGWYQSIGKDMQ 448
Query: 429 FKALKTESGGGADTSKFIADRTTIARAIESNLGRSEKGDYFSVKAAVSFLKVDNFAYPAC 488
+ E R I ES+L Y +V+ V FLK D Y +C
Sbjct: 449 VTLPRREE-----------KRRLIQEVKESDL------TYSTVQGTVMFLKEDGLWYTSC 491
Query: 489 LNEGCQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVG 548
EGC KKV+M+ G +RCE+C+M + YRYM+T+ + D +GQ+W++LF++ A G
Sbjct: 492 KGEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSFFG 551
Query: 549 VSANELTELKENNNQAFVALTQKVQMNEYDFRIRAREDNYNNETRIRYTVANLHDL 604
+SA E+ + E AL +++ E FRI++++D+YN+E R+RY+ ++ +L
Sbjct: 552 ISAREMKVMSEEAPGELQALIRRMYFRECLFRIKSKQDSYNDEIRMRYSGLSVENL 607
>At5g08020 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 604
Score = 247 bits (631), Expect = 3e-65
Identities = 142/449 (31%), Positives = 239/449 (52%), Gaps = 17/449 (3%)
Query: 185 SRPIFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSG-EIRATAFN 243
+R + + ++PYQ +WTIK RV+ KG ++ ++N RGEG + NV L D G +I+AT FN
Sbjct: 154 TRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFN 213
Query: 244 DNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPE 303
A KF + + GK Y++S+ ++ A QF +++ YE++L + VEE NE+ PE
Sbjct: 214 AAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMF-TPE 272
Query: 304 MHFNFIKLNDVNN-VEKNTAIDVVGILKSVGPHFELAAKSGKKF-DRRDVEIVDDSGACI 361
FNF+ ++++ V + IDV+G+++SV P + K+ + +RD+ + D++ +
Sbjct: 273 TKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTV 332
Query: 362 SLGLWGEQAIKFN------LPEGSVVALKGVRVTDFNGKSLSMGNTSSLFANPDIQEAYT 415
+ LW + A V+A+K ++V F G SLS + S++ NP+ EA
Sbjct: 333 VVSLWNDLATGIGQELLDMADNHPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATK 392
Query: 416 LKGWYDANASNTTFKALKTESGGGADTSK--FIADRTTIARAIESNLGRSEKGDYFSVKA 473
LK WYDA T+ A+ + A+ +DR ++ + EK +FS +A
Sbjct: 393 LKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRA 452
Query: 474 AVSFLKVDNFA-YPACLNEGCQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIMDQTG 532
+SF+K D Y AC + C KKV D + CE C RY++ + + D TG
Sbjct: 453 YISFIKPDQTMWYRAC--KTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTG 510
Query: 533 QIWLTLFNDQAEQLVGVSANELTELKENNNQA--FVALTQKVQMNEYDFRIRAREDNYNN 590
+ WL+ FND+AE+++G +A++L +LK + F ++ + + FRI + YN+
Sbjct: 511 ETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNS 570
Query: 591 ETRIRYTVANLHDLRWKAEADFLAAELLK 619
E R R TV + + + AE L ++ K
Sbjct: 571 EKRQRITVRGVSPIDFAAETRLLLQDISK 599
>At5g61000 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 629
Score = 244 bits (622), Expect = 4e-64
Identities = 138/447 (30%), Positives = 239/447 (52%), Gaps = 17/447 (3%)
Query: 185 SRPIFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSG-EIRATAFN 243
+R + + ++PYQ NWTIK RV+ KG ++ ++N RGEG + NV L D G +I+AT FN
Sbjct: 178 TRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFN 237
Query: 244 DNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPE 303
D A KF + Q GK Y++S+ ++ A QF +++ YE++L + VEE +E+ +PE
Sbjct: 238 DAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMF-IPE 296
Query: 304 MHFNFIKLNDVN-NVEKNTAIDVVGILKSVGPHFELAAKSGKKF-DRRDVEIVDDSGACI 361
FNF+ + ++ V + ID++G+++SV P + ++ + +RD+ + D+S +
Sbjct: 297 TKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTV 356
Query: 362 SLGLWGEQAIKFN------LPEGSVVALKGVRVTDFNGKSLSMGNTSSLFANPDIQEAYT 415
+ LW + A + V+A+K ++V DF G SLS + S++ NP+ EA
Sbjct: 357 VVSLWNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKK 416
Query: 416 LKGWYDANASNTTFKALKTESGGGADTSK--FIADRTTIARAIESNLGRSEKGDYFSVKA 473
LK W+D+ + ++ + A DR ++ + EK +FS +A
Sbjct: 417 LKSWFDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRA 476
Query: 474 AVSFLKVDNFA-YPACLNEGCQKKVIMQSDGTWRCEKCDMNHPHPKYRYMLTISIMDQTG 532
+SF+K D Y AC + C KKV D + CE C + RY++ + + D +G
Sbjct: 477 YISFIKPDQTMWYQAC--KTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSG 534
Query: 533 QIWLTLFNDQAEQLVGVSANELTELKENNNQA--FVALTQKVQMNEYDFRIRAREDNYNN 590
+ W++ FND+AE+++G SA+EL +LK + + ++ + + FR+ ++ YN
Sbjct: 535 ETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNG 594
Query: 591 ETRIRYTVANLHDLRWKAEADFLAAEL 617
E R R TV + L + AE L ++
Sbjct: 595 EKRQRVTVKGVAPLDFAAETRLLLQDI 621
>CE04405 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 655
Score = 230 bits (586), Expect = 6e-60
Identities = 143/445 (32%), Positives = 247/445 (55%), Gaps = 19/445 (4%)
Query: 166 APQPRSVPKAKSNNGSSQNSRPIFAIEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHI 225
A + R+VP + +S R + I ++PY +N+ I VS K +++ + + +
Sbjct: 202 ATRARAVPPP-ARRTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEEIRTFPAKNTK--V 258
Query: 226 LNVNLLDSSGE-IRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSL 284
N + DS+G+ IR TAFN+ A + E +Y++S V+ A +F+N H YE++L
Sbjct: 259 FNFEITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITL 318
Query: 285 ERDCVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHF-ELAAKSG 343
D ++E + P++ +KL ++ IDV+ +++ + P E +K+G
Sbjct: 319 RSDSIIEA--GGELLAAPKLILKRVKLGEIAGYA-GQLIDVLVVVEKMDPEATEFTSKAG 375
Query: 344 KKFDRRDVEIVDDSGACISLGLWGEQAIKFNLPE--GSVVALKGVRVTDFNGK-SLSMGN 400
K +R++E++D+SGA + L LWG++A K + + V+A KGV +FNG SL G+
Sbjct: 376 KSLIKREMELIDESGALVRLTLWGDEATKALVDDYVQKVIAFKGVIPREFNGGFSLGTGS 435
Query: 401 TSSLFANPDIQEAYTLKGWYDANASNTTFKALKTESGGGADTSKFIADRTTIARAIESNL 460
+ + + P+I L WY AN TT + +++ GG++ + TIA E
Sbjct: 436 ATRIISVPEIAGVSELYDWY-ANVKPTTEVKMMSQAAGGSNEAP-----RTIAGLQEMQF 489
Query: 461 GR-SEKGDYFSVKAAVSFLKVDNFAYPACLNEGCQKKVIMQSDGTWRCEKCDMNHPHPKY 519
G+ S+KGDY +VKA ++ + N Y C +EGCQKK++ ++ G +RCEKC+ N K+
Sbjct: 490 GKDSDKGDYATVKAMITRVNPTNALYRGCASEGCQKKLVGEN-GDYRCEKCNKNMNKFKW 548
Query: 520 RYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELKENNNQAFVALTQKVQMNEYDF 579
YM+ + D+TGQ+++T F D A ++VG SA EL EL + + + A+ +++Q +
Sbjct: 549 LYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDEYNAIFERLQFVPKMW 608
Query: 580 RIRAREDNYNNETRIRYTVANLHDL 604
R+R + D+YN E R + TV + D+
Sbjct: 609 RLRCKMDSYNEEVRQKMTVYGVDDV 633
>At1g52950 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 566
Score = 85.1 bits (209), Expect = 3e-16
Identities = 98/432 (22%), Positives = 178/432 (40%), Gaps = 53/432 (12%)
Query: 187 PIFAIEQISPYQNNWTIKARVSFKGDLKKWQN-NRGEGHILNVNLLDSSG-EIRATAFND 244
P AI+ + P++ +W I+ ++ L W + +G G + L D G +I+A +
Sbjct: 6 PYTAIKNLKPFKTSWCIQVKI-----LHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKE 60
Query: 245 NAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPEM 304
+ +K ++ G + + V A + + HPY ++++ + E+
Sbjct: 61 HLLKLQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTR----FSNSPTISDEI 116
Query: 305 HFNFIKLNDV--NNVEKNTAIDVVGILKSVGPHFELAAKSGKKFDRRDVEIVDDSGACIS 362
+ + NDV +++N ++V+G L +VG +L GK + D ++ D +
Sbjct: 117 WLDLVNFNDVLSGTLDQNKLVNVIGQLVNVG-EIQLLDVQGKPTKKIDFQLRDTDDNRLP 175
Query: 363 LGLWGEQAIKFNLPE-----GSVVALKGVRVTDFNGKSLSMGNT---SSLFANPDIQEAY 414
LWG+ A + + G V+ L + S+ N S +F NP + E
Sbjct: 176 CSLWGKFADQIHKVSKESVGGIVICLIRWAKLGHYKEIRSISNAFDASEVFINPILTEVE 235
Query: 415 TLKGWYDANASNTT-------FKALKTESGGGADTSKFIADRTTIARAIESNLGRSEKGD 467
K ++ T F+ L+ + SK +R TIA S +
Sbjct: 236 EFKNLLPSDGLALTIMEPKPRFQPLRVRE----ERSKQF-ERKTIAELKASF-------E 283
Query: 468 YFSVKAAVSFLKVD-NFAYPACLNEGCQKKVIMQ----SDGT----WRCEKCDMNHPHPK 518
VK S L +D ++++ + C KKV S G +RC+KC + +
Sbjct: 284 VEKVKIICSILSIDLDYSWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIE 343
Query: 519 YRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELKE---NNNQAFVALTQKVQMN 575
RY L + IMD TG+ L LF+ E ++G A EL ++ + Q + + +
Sbjct: 344 ARYWLHLDIMDNTGESKLMLFDSFVEPIIGCPATELLDVTNEQIDEPQPLPDVVKNIIGK 403
Query: 576 EYDFRIRAREDN 587
Y F + +DN
Sbjct: 404 TYQFLVCVEQDN 415
>At1g35920 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 567
Score = 64.7 bits (156), Expect = 4e-10
Identities = 91/383 (23%), Positives = 158/383 (40%), Gaps = 47/383 (12%)
Query: 191 IEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSGE-IRATAFNDNAIKF 249
++ + PY+N W ++ ++ K++ +N E + + + D G+ + AT + KF
Sbjct: 8 LKDVRPYKNAWRVQVKILHSW--KQYTSNTRE--TIELVISDEHGKKMHATVKKELVSKF 63
Query: 250 NEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMN-EDANDVPEMHFNF 308
L G+ F+ + A QF H Y+++ + V C + D+N + F+
Sbjct: 64 VHKLIVGEWVFIEIFGLTYASGQFRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLASFSK 123
Query: 309 IKLNDVNNVEKNTAIDVVGILKSVGPHFELAAKSGKKFDRRDVEIVDDSGACISLGLWGE 368
I+ ++N + +D +G + +VG EL A + K+ + D EI D + + LWG
Sbjct: 124 IQSGELN---PHMLVDAIGQIITVGELEELKANN-KRTTKIDFEIRDQMDERMQVTLWGT 179
Query: 369 QAIKF----NLPEGSVVALKGVRVTDFNGKSLSMG-NTSSLFANPDIQEAYTLKGWYDAN 423
A + EG A + KSLS + S + NPD E + +
Sbjct: 180 YAQEVYRACQESEGKNTA---------SVKSLSNSFDASQVHVNPDFPEVHDFSQTLLND 230
Query: 424 ASNTTFKALKTESGGGADTSKFIADRTTIARAIESNLGRSEKGDYFSVKAAVSFLKVDN- 482
+ F+A A ++ T IE+ L +E G V+ + VD
Sbjct: 231 GAICVFRARVPRFEMVAVKRTDYSEYTR--NTIENLLSSTEVG---KVRVLCTIYAVDTD 285
Query: 483 --FAYPACLNEGCQKKVIMQSDGT------------WRCEKCDMNHPHPKYRYMLTISIM 528
+ Y +C + C KKV G W C+ C + RYM+ +M
Sbjct: 286 WAWYYISC--KTCNKKVNHIHAGVNGVNNKGKKPRFW-CDTCTSVVTNVVSRYMIYAKVM 342
Query: 529 DQTGQIWLTLFNDQAEQLVGVSA 551
D TG+ L LF+ +++G SA
Sbjct: 343 DSTGEAKLLLFDSICSEIIGESA 365
>7299003 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 189
Score = 63.9 bits (154), Expect = 7e-10
Identities = 51/195 (26%), Positives = 88/195 (44%), Gaps = 9/195 (4%)
Query: 228 VNLLDSSGEIRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERD 287
++LLD SGEI F D +Q G Y +S V+ A + +P +L +
Sbjct: 1 MHLLDESGEITGLVFADYDNGLYGQIQTGLVYLISGFEVEKAISSYKVSDNPNQLFFCAN 60
Query: 288 CVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELAAKSGKKFD 347
V+E + +P ++F+ L V++ +D +GI VG + G F
Sbjct: 61 TVLELSA---CDRIPREKYSFLPLLKVSSKRDQEPVDAIGICAEVG----MLENRGGCFI 113
Query: 348 RRDVEIVDDSGACISLGLWGEQAIKFNLPEGSVVALKGVRVTDFNGK-SLSMGNTSSLFA 406
R ++ +VD + L LW ++A+ F V+ +KG R N + L+ +++
Sbjct: 114 R-ELLLVDPDFHPVILNLWQKEAVNFVGQRDDVIVVKGARAQLHNNEMKLNASWYTNMQI 172
Query: 407 NPDIQEAYTLKGWYD 421
NPDI +A + WY+
Sbjct: 173 NPDIPDATGMLEWYN 187
>At2g07630 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 458
Score = 57.8 bits (138), Expect = 5e-08
Identities = 84/354 (23%), Positives = 146/354 (40%), Gaps = 33/354 (9%)
Query: 223 GHILNVNLLDSSGE-IRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHPYE 281
G ++ L D G+ I A+ ++ +F ++ G+ + + A QF H Y+
Sbjct: 4 GETFDMVLSDVRGKKIHASVKREHLNRFERLIVPGEWRAIENFGLTYATGQFKATDHRYK 63
Query: 282 LSLERDCVVEECMNEDANDVPEMHF-NFIKLNDVNN--VEKNTAIDVVGILKSVGPHFEL 338
+ V + + + +F + NDV N + +N IDVVG + +VG E
Sbjct: 64 MGFMAQTRVVRI-----DPLSDSYFLSLTAFNDVLNGGLNQNYLIDVVGQIVNVG-EMET 117
Query: 339 AAKSGKKFDRRDVEIVDDSGACISLGLWGEQAIK-FNLPEGS-----VVALKGVRVTDFN 392
+ + D E+ D + LWG A + F E + + ++ ++ +
Sbjct: 118 IDVHNQPTKKIDFELRDQKDERLPCTLWGSFAEQVFTACEAANGEMIICLVRFAKLKTYK 177
Query: 393 G-KSLSMG-NTSSLFANPDIQEAYTLKGWYDANASNTTFKALKTESGGGADTSKFIADRT 450
+S+S NTS + NPD+ E K + T K +S +F
Sbjct: 178 DVRSISNAFNTSQILINPDLPEILEFKDALPKDCLALTLIESKPKS----KIDEFPTGDF 233
Query: 451 TIARAIESNLGRSEKGDYFSVKAAVSFLKVD---NFAYPACLNEGCQKKV---IMQS--D 502
+ A ++ SE D VK + +D ++ Y C + C KKV +M S
Sbjct: 234 YLQFAKKTIKEVSEMFDVGRVKVLCTIYDIDRDWSWYYIVC--KKCNKKVTKVVMTSLKA 291
Query: 503 GTWRCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTE 556
W CE C + RY L + +MD +G++ L LF+ + ++VG AN L +
Sbjct: 292 QLW-CETCRAPITNVLARYKLHVKVMDSSGEMKLMLFDAMSSEIVGCPANNLLD 344
>CE02842 [L] KOG0851 Single-stranded DNA-binding replication protein A (RPA)
large (70 kD) subunit and related ssDNA-binding proteins
Length = 391
Score = 55.8 bits (133), Expect = 2e-07
Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 191 IEQISPYQNNWTIKARVSFKGDLKKWQNNRGEGHILNVNLLDSSG-EIRATAFNDNAIKF 249
I ++ +N+ I RV+ D ++ + + + + D +G IR AF + ++
Sbjct: 190 IANLNDSVDNFKIHGRVTLMDDKRRPEK------VFSFEITDVNGYTIRCVAFGELGVRL 243
Query: 250 NEILQEGKAYFVSKARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPEMHFNFI 309
+ + ++Y+++ +V+ ++ H +E+ L+ +E VP+++ N +
Sbjct: 244 YGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPTIEPA--PAVLTVPKLNLNRV 301
Query: 310 KLNDVNNVEK-NTAIDVVGILKSVGPHFE-LAAKSGKKFDRRDVEIVDDSGACISLGLWG 367
L +V N + IDV+ ++ + + K R++ ++DDS I L LWG
Sbjct: 302 MLCNVQNEQYYRKPIDVIVAVEEINDFLDDYHPIENKPPVLRNMVVIDDSNFRIRLTLWG 361
Query: 368 EQAIKFNLPE--GSVVALKGVRVTDFNGK 394
+A+ + E +VA KG+ T F G+
Sbjct: 362 YRAMDSGVEEFQNKIVAFKGIVPTQFEGE 390
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,814,220
Number of Sequences: 60738
Number of extensions: 1440867
Number of successful extensions: 3813
Number of sequences better than 1.0e-05: 16
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3733
Number of HSP's gapped (non-prelim): 19
length of query: 621
length of database: 30,389,216
effective HSP length: 112
effective length of query: 509
effective length of database: 23,586,560
effective search space: 12005559040
effective search space used: 12005559040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)