ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2364 suspect: LH R KOG0017 General function prediction only FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2364 800781 797536 -1082
(1082 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBL005w [R] KOG0017 FOG: Transposon-encoded proteins with TYA re... 164 7e-40
>YBL005w [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
transcriptase integrase domains in various combinations
Length = 976
Score = 164 bits (415), Expect = 7e-40
Identities = 222/1058 (20%), Positives = 419/1058 (38%), Gaps = 121/1058 (11%)
Query: 48 RRKVSRACDSCRKKKIKCSGTLPCKSCETYGCECVY--SHAPYGVAKGKKKTAKSDSSAF 105
R KVS AC +CRK+KIKC+G PC +C +Y C CV+ H P K DSS
Sbjct: 8 RSKVSTACVNCRKRKIKCTGKYPCTNCISYDCTCVFLKKHLPQ----------KEDSS-- 55
Query: 106 TKEKLSVQSIPNSTVAILNPEIDGNSYAPSRTGFSEATITGVQSHLHXXXXXXXXXXXXX 165
QS+P T A+ P N A + + I +
Sbjct: 56 -------QSLP--TTAVAPPSSHANVEASADVQHLDTAIKLDNQYYFKLMND-------- 98
Query: 166 XXXXXXXXVTQTSHPVGFSCPRRFDPVKDDASTNINDPSSDDINRYPILYISNAEIESRI 225
+ QT PV A T+ D S++ N IL+ +++ ++++
Sbjct: 99 --------LIQT-------------PVSPSA-THAPDTSNNPTNDNNILFKDDSKYQNQL 136
Query: 226 AKLKECVSSLRRNDGPQSESIMYAIKNIEFEIQTLNNKLARPCINHELTSNPELNRDKSV 285
+ +++L P + I + ++ L N P IN+ S+ +S+
Sbjct: 137 VTYQNILTNLYAL--PPCDDTQLLIDKTKSQLNNLINSW-NPEINYPKLSSFSPRPQRSI 193
Query: 286 CFEAKLMKNHESNYVSLNRYV-----KINTNKLEEYLQKPPMVDVKHGLYFPGQWLSLRG 340
E L+ N N + + R+ + + + +L P+VD GL+ P Q SLRG
Sbjct: 194 --ETYLLTNKYRNKIHMTRFSFWTDQMVKSQSPDSFLATTPLVDEVFGLFSPIQAFSLRG 251
Query: 341 VGYFVKDFMKHAKCNIK-ELKENIYLILRQFDIMSAVEIKNAECWGAPVELYCQNFSVKV 399
+GY +K +++ ++ + KE IYLILR FD+ I+ P+E Y Q +K
Sbjct: 252 IGYLIKKNIENTGSSMLIDTKETIYLILRLFDLCYEHLIQGCISISNPLENYLQK--IKQ 309
Query: 400 RKDERVQHLLRKIPASLLNK-VIATKSEFKLENWNHIINNTSETSVSSATDAFHWIIAIM 458
L PA L N VI+ + I T+ + + D+F +
Sbjct: 310 TPTTTASASLPTSPAPLSNDLVISVIHQLPQPFIQSITGFTTTQLIENLHDSFSMFRIVT 369
Query: 459 EVNKNEYQKLSK--HHKLSAQQRGDDIITETLFFIEAEELLFTLGLHFFKQISIARVHSE 516
++ ++ ++ + S + ++ + F +E LL TL ++ +
Sbjct: 370 QMYAQHRKRFAEFLNQAFSLPHQEKSVLFSS--FCSSEYLLSTLCYAYYNVTLYHMLDIN 427
Query: 517 PLTFLDDLLDFVMNIFWIDGHQIFTCLLSSAIQTMRLCGMDHWETYLVMDERMADSRRNL 576
L +L+ L+ + ID F +L A+ G+ WE Y+ +DE A+ RR +
Sbjct: 428 TLDYLEILVSLLEIQNEIDERFGFEKMLEVAVTCSTKMGLSRWEYYVGIDENTAERRRKI 487
Query: 577 WWKAFIWDQYSVFITGSRPVFSTVDIQGPLFPGFMRKMKFIDHQDLMANFDEQF------ 630
WWK + ++ + G + + + L P R M FI+H++ +
Sbjct: 488 WWKIYSLEKRFLTDLGDLSLINEHQM-NCLLPKDFRDMGFINHKEFLTKIGTSSLSPSSP 546
Query: 631 NLENVDFSSSDLTRRETIAFVIFLSCFFAHQFQCKIVFSDRFSNFRIFALSKSEKIKMAE 690
L+N+ S S L +A + FF+ + +++++F++ + + K+ E
Sbjct: 547 KLKNL--SLSRLIEYGELAIAQIVGDFFS-----ETLYNEKFTSLEVSVKPTIIRQKLLE 599
Query: 691 EVLSELRIYKHRLDILNEGFKRYLESGLKKVDPKENSDLEDPGIFWYEITREVSLTFCVV 750
+V ++ ++ +L + R + K +DL + F ++ + F ++
Sbjct: 600 KVFEDIESFRLKLAKIKLHTSRVFQVAHCKYPEYPKNDLIEAAKF---VSYHKNTWFSIL 656
Query: 751 SSV-HIIARLNPSPEVVSISQEMKKFRKNIGVSWKITMQYLEQNNSLYDLFFMSKLVALV 809
+V ++IARL+ PEV I+++ K+ + W+ Q+L Q ++ + ++ L+
Sbjct: 657 GAVNNLIARLSEDPEV--ITEQSMKYANEMFQEWREINQFLIQVDTDFIVWACLDFYELI 714
Query: 810 AVSYVGENIAYFKHASFDDVCS----FVKICRFFDYSGINCGSVE-NTRIQRTLLQIQFL 864
+ H + +DV + F +I + N + + + R + L
Sbjct: 715 FFVMASKFYVEDPHITLEDVINTLKVFKRITNIISFFNNNLDEKDYDCQTFREFSRSSSL 774
Query: 865 LKILVRCVVSVHVQSHKKTIENLLQQLASSKYPEYQETIVKLFDPTFNYFSPTLNALKES 924
+ I +R + + + + +++L + P + + + FD + L ++++S
Sbjct: 775 VAISIRIIFLKYCYAEQIDRAEFIERLKEVE-PGLSDLLREFFDTRSFIYRYMLKSVEKS 833
Query: 925 ELHLQIKSWLTETLYGSVLSLPNNLFFDDIFPTYTPSAGSSVADQRDIPPNYFTEAVDTV 984
HL I+ L E+ Y L+ D + P G+S I Y + A
Sbjct: 834 GFHLIIRKML-ESDY-------KFLYRDKLATGNIPDQGNS----SQISQLYDSTAPSYN 881
Query: 985 NGTVIANKNPHFSSTERYNGNNELKNGLDSSDKTEGFQNXXXXXXXXXXXXXXNH----- 1039
N + A +P S+ +G + D +E H
Sbjct: 882 NASASAANSPLKLSSLLNSGEESY-----TQDASENVPCNLRHQDRSLQQTKRQHSAPSQ 936
Query: 1040 --IDQGTTFNLGTIYDFADHGDFDRLFSFIWDDFVGAP 1075
++ +NLGT+ +F GD L+ +W+D P
Sbjct: 937 ISANENNIYNLGTLEEFVSSGDLTDLYHTLWNDNTSYP 974
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,379,074
Number of Sequences: 60738
Number of extensions: 2698704
Number of successful extensions: 6919
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6914
Number of HSP's gapped (non-prelim): 3
length of query: 1082
length of database: 30,389,216
effective HSP length: 117
effective length of query: 965
effective length of database: 23,282,870
effective search space: 22467969550
effective search space used: 22467969550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)