ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2389 good P KOG3386 Inorganic ion transport and metabolism Copper transporter
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2389 806124 806528 135
(135 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR175w [P] KOG3386 Copper transporter 112 1e-25
SPBC23G7.16 [P] KOG3386 Copper transporter 82 3e-16
SPAC1142.05 [P] KOG3386 Copper transporter 54 8e-08
SPCC1393.10 [P] KOG3386 Copper transporter 49 1e-06
At3g46900 [P] KOG3386 Copper transporter 48 4e-06
CE28937 [P] KOG3386 Copper transporter 47 7e-06
>YHR175w [P] KOG3386 Copper transporter
Length = 189
Score = 112 bits (280), Expect = 1e-25
Identities = 57/134 (42%), Positives = 89/134 (65%), Gaps = 14/134 (10%)
Query: 15 CSMDMTFNWNTENVCVVFKSWSINSHSQLLFSCLAIFLLSYGYEYLKH---------HIR 65
CSM+M F+W+ +N CVVF+ W I + L+ SCLAIF L+Y YEYLK+ +
Sbjct: 57 CSMNMLFSWSYKNTCVVFEWWHIKTLPGLILSCLAIFGLAYLYEYLKYCVHKRQLSQRVL 116
Query: 66 LVNQNLSGTLSRRNRVQSSLWYGLQYSISILLMLIYMTYNGYLIAAVLLGAMFGNFHWAQ 125
L N++L+ +++ ++V +S+ YGLQ S +LML++MTYNG+L+ AV+ GA++GN+ W
Sbjct: 117 LPNRSLT-KINQADKVSNSILYGLQVGFSFMLMLVFMTYNGWLMLAVVCGAIWGNYSWCT 175
Query: 126 SPAVQL----LPCH 135
S + ++ L CH
Sbjct: 176 SYSPEIDDSSLACH 189
>SPBC23G7.16 [P] KOG3386 Copper transporter
Length = 148
Score = 81.6 bits (200), Expect = 3e-16
Identities = 48/121 (39%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 15 CSMDMTFNWNTENVCVVFKSWSINSHSQLLFSCLAIFLLSYGYEYLKHHIRL-------- 66
CSM MTFN + +N+C+VFKSW I + SQ L S LAI +L Y +E L+ L
Sbjct: 12 CSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYLFERLRSFTSLKETEFQRG 71
Query: 67 -VNQNLSGTLSRRNRVQSS-------LWYGLQYSISILLMLIYMTYNGYLIAAVLLGAMF 118
Q G L+ ++ S Y +Q S LML+ MTYN Y+I A+ +GA F
Sbjct: 72 YAGQQSEGLLTHHSKSLKSGRPFRLCALYAVQLVFSYFLMLVAMTYNAYVILAIAIGAAF 131
Query: 119 G 119
G
Sbjct: 132 G 132
>SPAC1142.05 [P] KOG3386 Copper transporter
Length = 173
Score = 53.5 bits (127), Expect = 8e-08
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 15 CSMDMTFNWNTENVCVVFKSWSINSHSQLLFSCLAIFLLSYGYEYLKHHIRLVN------ 68
C M M +NW + C + KSW IN+ ++ S + IF + E L R+ +
Sbjct: 27 CRMSMLWNWYIHDSCFLAKSWHINTGNKFAGSIIGIFFFAVAIEGLSLVQRMFDRWIVAH 86
Query: 69 ---QNLSGTLS---RRNRVQSSLW--------YGLQYSISILLMLIYMTYNGYLIAAVLL 114
+ LSG L + V ++W Y Y + +LMLI M++NGY I +
Sbjct: 87 SNGKTLSGPLRIFFPSSTVHVTVWQQLIRAAMYSSFYLSATILMLIVMSFNGYAILFGFV 146
Query: 115 GAMFGNFHWA 124
GA G F +A
Sbjct: 147 GAWIGFFLFA 156
>SPCC1393.10 [P] KOG3386 Copper transporter
Length = 289
Score = 49.3 bits (116), Expect = 1e-06
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 22/129 (17%)
Query: 15 CSMDMTFNWNTENVCVVFKSWSINSHSQLLFSCLAIFLLSYGYEYLK------------- 61
C + M +NW T + C + K W I S + S I + E ++
Sbjct: 118 CKLSMYWNWYTIDACFITKHWHITSKHMFVGSIFGIIFMMMALELVRRGQREFDRWCVRR 177
Query: 62 ---------HHIRLVNQNLSGTLSRRNRVQSSLWYGLQYSISILLMLIYMTYNGYLIAAV 112
H V+ S L S +Y +QY ++ + ML+ M YNGY+I +
Sbjct: 178 FSPASNSCCHSGAPVHSGPSMALRIFLHFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFL 237
Query: 113 LLGAMFGNF 121
G FG F
Sbjct: 238 FCGTFFGYF 246
>At3g46900 [P] KOG3386 Copper transporter
Length = 158
Score = 47.8 bits (112), Expect = 4e-06
Identities = 37/121 (30%), Positives = 55/121 (44%), Gaps = 9/121 (7%)
Query: 1 MSSHHHPAEPETGMCSMDMTFNWNTENVCVVFKSWSINSHSQLLFSCLAIFLLSYGYEYL 60
MS+H P M M MTF W +N V+F W S + IFLL+ E+L
Sbjct: 19 MSNHTTPH-----MMMMHMTFFWG-KNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWL 72
Query: 61 KHHIRLVNQNLSGTLSRRNRVQSSLWYGLQYSISILLMLIYMTYNGYLIAAVLLGAMFGN 120
H L +SG+ +R + + Y L+ +S L+ML M++N + + G G
Sbjct: 73 AHSPIL---RVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGF 129
Query: 121 F 121
F
Sbjct: 130 F 130
>CE28937 [P] KOG3386 Copper transporter
Length = 134
Score = 47.0 bits (110), Expect = 7e-06
Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 30 VVFKSWSINSHSQLLFSCLAIFLLSYGYEYLKHHIRLVNQN---------LSGTLSRRNR 80
V+F +W+I S +++++C+ + + E +K++ RL+ + +S LS +
Sbjct: 28 VLFSTWNITSAGKMVWACILVAIAGIILEAIKYNRRLIQKRQSPSKKESYISRLLSTMHF 87
Query: 81 VQSSLWYGLQYSISILLMLIYMTYNGYLIAAVLLGAMFG 119
Q+ L++ +Q S LMLI+MT++ +L AV++G G
Sbjct: 88 FQTFLFF-VQLGFSYCLMLIFMTFSIWLGLAVVIGLSIG 125
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.326 0.136 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,323,301
Number of Sequences: 60738
Number of extensions: 302509
Number of successful extensions: 932
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 6
length of query: 135
length of database: 30,389,216
effective HSP length: 95
effective length of query: 40
effective length of database: 24,619,106
effective search space: 984764240
effective search space used: 984764240
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)