ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2481 good A KOG0213 RNA processing and modification Splicing factor 3b, subunit 1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2481 835653 838514 954
(954 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR288w [A] KOG0213 Splicing factor 3b subunit 1 1039 0.0
SPAC27F1.09c [A] KOG0213 Splicing factor 3b subunit 1 877 0.0
At5g64270 [A] KOG0213 Splicing factor 3b subunit 1 848 0.0
7296186 [A] KOG0213 Splicing factor 3b subunit 1 840 0.0
Hs6912654 [A] KOG0213 Splicing factor 3b subunit 1 834 0.0
CE03641 [A] KOG0213 Splicing factor 3b subunit 1 797 0.0
ECU11g0900 [A] KOG0213 Splicing factor 3b subunit 1 146 1e-34
>YMR288w [A] KOG0213 Splicing factor 3b subunit 1
Length = 971
Score = 1039 bits (2686), Expect = 0.0
Identities = 509/951 (53%), Positives = 669/951 (69%), Gaps = 9/951 (0%)
Query: 1 MEAIKFEKSGQRHSLTGQYTAPRAILEST------VGKDEGDDELTANQKQRSLYNKQSD 54
++ + S + H L GQY+ P+ + E+ +G++E D L + R++ N++
Sbjct: 5 IQFVNANNSDKSHQLGGQYSIPQDLRENLQKEAARIGENE-KDVLQEKMETRTVQNREDS 63
Query: 55 YHKRRFLRNLXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXYTMPKTSQHIITELSEEM 112
YHKRRF Y P S + E S+
Sbjct: 64 YHKRRFDMKFEPDSDTQTVTSSENTQDAVVPRKRKSRWDVKGYEPPDESSTAVKENSDSA 123
Query: 113 VTEVPGVRNLQFFKPSDRQHFAILFDERSPEDMTEEERXXXXXXXXXXXXXNGLPSSRKI 172
+ V G+ +L FFKPSD ++FA + ++ +++ ++E+ NG +SR+
Sbjct: 124 LVNVEGIHDLMFFKPSDHKYFADVISKKPIDELNKDEKKERTLSMLLLKIKNGNTASRRT 183
Query: 173 ALRALTQKAPSFGAPLLFDSILPILLDKTLEDEEHQLMLKLMDRILFQLQDLVKPYTHKL 232
++R LT KA +FG ++F+ +LPILLD++LED+E LM+K +DR+L+QL DL KPY HK+
Sbjct: 184 SMRILTDKAVTFGPEMIFNRLLPILLDRSLEDQERHLMIKTIDRVLYQLGDLTKPYVHKI 243
Query: 233 LIVLCPMLIDPVPLTRSTGRDIITTLAKAVGLPTMIYTMRPDLDHEDEYVRNTTARAMAV 292
L+V P+LID P+ RSTG++IIT L+ GL T++ MRPD+++EDEYVRN T+RA AV
Sbjct: 244 LVVAAPLLIDEDPMVRSTGQEIITNLSTVAGLKTILTVMRPDIENEDEYVRNVTSRAAAV 303
Query: 293 VSKAFGVSQTIPFLRLVCRSKKSWKARHTGIKIIQQIAILVGIGSLPYLDDLIACIEKGF 352
V+KA GV+Q +PF+ C S+KSWKARHTGIKI+QQI IL+GIG L +L L++CI+
Sbjct: 304 VAKALGVNQLLPFINAACHSRKSWKARHTGIKIVQQIGILLGIGVLNHLTGLMSCIKDCL 363
Query: 353 QDEHPPVRIIAAQTVSSLAQSCQPYGIERFNPVLEPLWRGVKQNRGRELAAFLKALGFLI 412
D+H PVRI+ A T+S+LA++ PYGIE FN VLEPLW+G++ +RG+ L++FLKA+G +I
Sbjct: 364 MDDHVPVRIVTAHTLSTLAENSYPYGIEVFNVVLEPLWKGIRSHRGKVLSSFLKAVGSMI 423
Query: 413 PLMDPEYASYYAEEVMKIVKREFNSPNEDMKKTVLFVIQKLSVTEGVTPQYLRKELAAEF 472
PLMDPEYA YY E M+I++REF+SP+++MKKT+L V+QK S E +TP++LR+E+A EF
Sbjct: 424 PLMDPEYAGYYTTEAMRIIRREFDSPDDEMKKTILLVLQKCSAVESITPKFLREEIAPEF 483
Query: 473 FKQFWVRRSALDRQLNNIVTFTTVLLANKTGAAFTLEKLIYPLKDESEPFRTMGAHAVNR 532
F++FWVRR ALDR LN +VT+TTV LA K G ++T++KL+ PL+DE+EPFRTM HAV R
Sbjct: 484 FQKFWVRRVALDRPLNKVVTYTTVTLAKKLGCSYTIDKLLTPLRDEAEPFRTMAVHAVTR 543
Query: 533 VVKALGMTDVXXXXXXXXXXXXXIAFQDQTNGERIVYRSIGTVAKSLNTRMKPYISPVSS 592
V LG D+ IAFQ+QTN + I+++ G V SL+ RMKP+++P+ S
Sbjct: 544 TVNLLGTADLDERLETRLIDALLIAFQEQTNSDSIIFKGFGAVTVSLDIRMKPFLAPIVS 603
Query: 593 IILEHLKHKKPLVRTHAASLCALLIPVFKHCEETALINKFNIILFESLGEVYPEVLXXXX 652
IL HLKHK PLVR HAA LCA+LIPV K+C E ++NK NIIL+ESLGEVYPEVL
Sbjct: 604 TILNHLKHKTPLVRQHAADLCAILIPVIKNCHEFEMLNKLNIILYESLGEVYPEVLGSII 663
Query: 653 XXXXXXXXQIRLTDLQPPPNQILLSLTPILRNNHPLVQESTVKLVGRIARRGPEYVSPKE 712
+ L LQPP NQIL +LTPILRN H V+ +T+K VG I + P Y PKE
Sbjct: 664 NAMYCITSVMDLDKLQPPINQILPTLTPILRNKHRKVEVNTIKFVGLIGKLAPTYAPPKE 723
Query: 713 WMRICSELLEMLKSPVKSIRVAANRTFGYIAKAIGPQDVLVTLLNNLKVQERQLRVNTSI 772
WMRIC ELLE+LKS K IR +AN TFG+IA+AIGP DVLV LLNNLKVQERQLRV T++
Sbjct: 724 WMRICFELLELLKSTNKEIRRSANATFGFIAEAIGPHDVLVALLNNLKVQERQLRVCTAV 783
Query: 773 AIGIVAKTCGPFVVIPALMNEYRTPDTNVQNGILKALAFILEYIGPMSKDYIYPLIPLLQ 832
AIGIVAK CGP+ V+P +MNEY TP+TNVQNG+LKA++F+ EYIG MSKDYIY + PLL+
Sbjct: 784 AIGIVAKVCGPYNVLPVIMNEYTTPETNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLE 843
Query: 833 DALTDRDLVHRQTAATCIKHLAFNCAGRGLEDAFIHCMNLLLPNVFETSPHVISRILEGL 892
DALTDRDLVHRQTA+ I HLA NC+G G EDAFIH MNLL+PN+FETSPH I RILEGL
Sbjct: 844 DALTDRDLVHRQTASNVITHLALNCSGTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGL 903
Query: 893 EGLRMALGPGVSMNYAWGGLFHPAKNVRNAYWKLYNGAYVAQPDALVPYYP 943
E L ALGPG+ MNY W GLFHPAKNVR A+W++YN YV DA+VP+YP
Sbjct: 904 EALSQALGPGLFMNYIWAGLFHPAKNVRKAFWRVYNNMYVMYQDAMVPFYP 954
>SPAC27F1.09c [A] KOG0213 Splicing factor 3b subunit 1
Length = 1188
Score = 877 bits (2266), Expect = 0.0
Identities = 441/837 (52%), Positives = 583/837 (68%)
Query: 107 ELSEEMVTEVPGVRNLQFFKPSDRQHFAILFDERSPEDMTEEERXXXXXXXXXXXXXNGL 166
EL + TE+PGV +L FFK D ++F L +T E NG
Sbjct: 333 ELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTIAELRERKILRLLLKVKNGT 392
Query: 167 PSSRKIALRALTQKAPSFGAPLLFDSILPILLDKTLEDEEHQLMLKLMDRILFQLQDLVK 226
P RK ALR LT +A FGA LF+ ILP+L+++TLED+E L++K++DRIL++L DLV+
Sbjct: 393 PPMRKSALRQLTDQARDFGAAALFNQILPLLMERTLEDQERHLLVKVIDRILYKLDDLVR 452
Query: 227 PYTHKLLIVLCPMLIDPVPLTRSTGRDIITTLAKAVGLPTMIYTMRPDLDHEDEYVRNTT 286
P+THK+L+V+ P+LID R+ GR+II+ LAKA GL MI TMRPD+DH DEYVRNTT
Sbjct: 453 PFTHKILVVIEPLLIDEDYYARAEGREIISNLAKASGLAHMIATMRPDIDHVDEYVRNTT 512
Query: 287 ARAMAVVSKAFGVSQTIPFLRLVCRSKKSWKARHTGIKIIQQIAILVGIGSLPYLDDLIA 346
ARA +VV+ A GV +PFL+ VCRSKKSW+ARHTG++IIQQIA+L+G LP+L +L+
Sbjct: 513 ARAFSVVASALGVPALLPFLKAVCRSKKSWQARHTGVRIIQQIALLLGCSILPHLKNLVD 572
Query: 347 CIEKGFQDEHPPVRIIAAQTVSSLAQSCQPYGIERFNPVLEPLWRGVKQNRGRELAAFLK 406
CI G +DE VRI+ A ++S+LA++ PYGIE F+ VL+PLW GV+++RG+ LAAFLK
Sbjct: 573 CIGHGLEDEQQKVRIMTALSLSALAEAATPYGIEAFDSVLKPLWSGVQRHRGKSLAAFLK 632
Query: 407 ALGFLIPLMDPEYASYYAEEVMKIVKREFNSPNEDMKKTVLFVIQKLSVTEGVTPQYLRK 466
A GF+IPLM+PEYAS++ +MKI+ REFNSP+E+MKK VL V+ + + T+GVTP+YLR
Sbjct: 633 ATGFIIPLMEPEYASHFTRRIMKILLREFNSPDEEMKKIVLKVVSQCASTDGVTPEYLRT 692
Query: 467 ELAAEFFKQFWVRRSALDRQLNNIVTFTTVLLANKTGAAFTLEKLIYPLKDESEPFRTMG 526
++ EFF FW RR A DR+ V TTV+LA + G+ +E+++ KDESEP+R M
Sbjct: 693 DVLPEFFHCFWSRRMASDRRSYKQVVETTVVLAQQVGSRQIVERVVNNFKDESEPYRKMT 752
Query: 527 AHAVNRVVKALGMTDVXXXXXXXXXXXXXIAFQDQTNGERIVYRSIGTVAKSLNTRMKPY 586
A V++V+ +LG++++ AFQ+Q+ E+++ TV +L TR KPY
Sbjct: 753 AETVDKVIGSLGVSEIDERLEELLLDGVLFAFQEQSVEEKVILTCFSTVVNALGTRCKPY 812
Query: 587 ISPVSSIILEHLKHKKPLVRTHAASLCALLIPVFKHCEETALINKFNIILFESLGEVYPE 646
+ + S IL L +K VR AA L + + V K C E AL+ K ++L+E LGE YPE
Sbjct: 813 LPQIVSTILYRLNNKSANVREQAADLVSSITIVLKACGEEALMRKLGVVLYEYLGEEYPE 872
Query: 647 VLXXXXXXXXXXXXQIRLTDLQPPPNQILLSLTPILRNNHPLVQESTVKLVGRIARRGPE 706
VL + ++ +QPP +L LTPILRN H VQE+T+ LVG+IA RG E
Sbjct: 873 VLGSILGAIKAIVSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTIDLVGKIADRGSE 932
Query: 707 YVSPKEWMRICSELLEMLKSPVKSIRVAANRTFGYIAKAIGPQDVLVTLLNNLKVQERQL 766
YVS +EWMRIC EL++MLK+ KSIR AA TFGYI+KAIGPQDVL TLLNNLKVQERQ
Sbjct: 933 YVSAREWMRICFELIDMLKAHKKSIRRAAVNTFGYISKAIGPQDVLATLLNNLKVQERQN 992
Query: 767 RVNTSIAIGIVAKTCGPFVVIPALMNEYRTPDTNVQNGILKALAFILEYIGPMSKDYIYP 826
RV T++AI IVA+TC PF V+PALM +YRTP+ NVQNG+LK+LAF+ EYIG ++DY+Y
Sbjct: 993 RVCTTVAIAIVAETCMPFTVVPALMADYRTPEMNVQNGVLKSLAFMFEYIGEQARDYVYA 1052
Query: 827 LIPLLQDALTDRDLVHRQTAATCIKHLAFNCAGRGLEDAFIHCMNLLLPNVFETSPHVIS 886
+ PLL DAL DRD VHRQTAA+ IKHL+ C G G+EDA IH +N+L PN+ E SPHVI+
Sbjct: 1053 ITPLLADALMDRDAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVIN 1112
Query: 887 RILEGLEGLRMALGPGVSMNYAWGGLFHPAKNVRNAYWKLYNGAYVAQPDALVPYYP 943
+ EG++G+R +G G M Y GLFHP++ VRN YW YN AYV DA+VPYYP
Sbjct: 1113 AVREGIDGIRNCIGVGPIMAYLVQGLFHPSRKVRNTYWTSYNSAYVQSADAMVPYYP 1169
>At5g64270 [A] KOG0213 Splicing factor 3b subunit 1
Length = 1269
Score = 848 bits (2191), Expect = 0.0
Identities = 428/830 (51%), Positives = 566/830 (67%), Gaps = 3/830 (0%)
Query: 115 EVPGVRNLQFFKPSDRQHFAILFDERSPEDMTEEERXXXXXXXXXXXXXNGLPSSRKIAL 174
EVPG L F KP D Q+F L +E + E+++ EE+ NG P RK AL
Sbjct: 423 EVPG--GLPFMKPEDYQYFGSLLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQRKTAL 480
Query: 175 RALTQKAPSFGAPLLFDSILPILLDKTLEDEEHQLMLKLMDRILFQLQDLVKPYTHKLLI 234
R LT KA GA LF+ ILP+L+ TLED+E L++K++DRIL++L ++V+PY HK+L+
Sbjct: 481 RQLTDKARELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDEMVRPYVHKILV 540
Query: 235 VLCPMLIDPVPLTRSTGRDIITTLAKAVGLPTMIYTMRPDLDHEDEYVRNTTARAMAVVS 294
V+ P+LID R GR+II+ L+KA GL +MI MRPD+D+ DEYVRNTTARA +VV+
Sbjct: 541 VIEPLLIDEDYYARVEGREIISNLSKAAGLASMIAAMRPDIDNIDEYVRNTTARAFSVVA 600
Query: 295 KAFGVSQTIPFLRLVCRSKKSWKARHTGIKIIQQIAILVGIGSLPYLDDLIACIEKGFQD 354
A G+ +PFL+ VC+SK+SW+ARHTGIKI+QQIAIL+G LP+L L+ IE G D
Sbjct: 601 SALGIPALLPFLKAVCQSKRSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSD 660
Query: 355 EHPPVRIIAAQTVSSLAQSCQPYGIERFNPVLEPLWRGVKQNRGRELAAFLKALGFLIPL 414
E+ VR I A ++++LA++ PYGIE F+ VL+PLW+G++ +RG+ LAAFLKA+GF+IPL
Sbjct: 661 ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPL 720
Query: 415 MDPEYASYYAEEVMKIVKREFNSPNEDMKKTVLFVIQKLSVTEGVTPQYLRKELAAEFFK 474
MD YASYY +EVM I+ REF SP+E+MKK VL V+++ TEGV P+Y+R ++ EFF+
Sbjct: 721 MDAIYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPEYIRSDILPEFFR 780
Query: 475 QFWVRRSALDRQLNNIVTFTTVLLANKTGAAFTLEKLIYPLKDESEPFRTMGAHAVNRVV 534
FW R+ AL+R+ + TTV +ANK G A + +++ LKDESE +R M +++VV
Sbjct: 781 NFWTRKMALERRNYKQLVETTVEVANKVGVADIVGRVVEDLKDESEQYRRMVMETIDKVV 840
Query: 535 KALGMTDVXXXXXXXXXXXXXIAFQDQTNGE-RIVYRSIGTVAKSLNTRMKPYISPVSSI 593
LG +D+ AFQ+QT+ + ++ G V +L R+KPY+ +
Sbjct: 841 TNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGT 900
Query: 594 ILEHLKHKKPLVRTHAASLCALLIPVFKHCEETALINKFNIILFESLGEVYPEVLXXXXX 653
I L +K VR AA L + + V K C E L+ ++L+E LGE YPEVL
Sbjct: 901 IKWRLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILG 960
Query: 654 XXXXXXXQIRLTDLQPPPNQILLSLTPILRNNHPLVQESTVKLVGRIARRGPEYVSPKEW 713
I +T + PP +L LTPIL+N H VQE+ + LVGRIA RG E+V +EW
Sbjct: 961 ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREW 1020
Query: 714 MRICSELLEMLKSPVKSIRVAANRTFGYIAKAIGPQDVLVTLLNNLKVQERQLRVNTSIA 773
MRIC ELLEMLK+ K IR A TFGYIAKAIGPQDVL TLLNNLKVQERQ RV T++A
Sbjct: 1021 MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA 1080
Query: 774 IGIVAKTCGPFVVIPALMNEYRTPDTNVQNGILKALAFILEYIGPMSKDYIYPLIPLLQD 833
I IVA+TC PF V+PALMNEYR P+ NVQNG+LK+L+F+ EYIG M KDYIY + PLL+D
Sbjct: 1081 IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED 1140
Query: 834 ALTDRDLVHRQTAATCIKHLAFNCAGRGLEDAFIHCMNLLLPNVFETSPHVISRILEGLE 893
AL DRDLVHRQTAA+ +KH+A AG G EDA +H +N + PN+FETSPHVI+ ++E +E
Sbjct: 1141 ALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIE 1200
Query: 894 GLRMALGPGVSMNYAWGGLFHPAKNVRNAYWKLYNGAYVAQPDALVPYYP 943
G+R+ALG V +NY GLFHPA+ VR YWK+YN Y+ D LV YP
Sbjct: 1201 GMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYP 1250
>7296186 [A] KOG0213 Splicing factor 3b subunit 1
Length = 1349
Score = 840 bits (2171), Expect = 0.0
Identities = 423/839 (50%), Positives = 564/839 (66%)
Query: 105 ITELSEEMVTEVPGVRNLQFFKPSDRQHFAILFDERSPEDMTEEERXXXXXXXXXXXXXN 164
+ + + + + P +NL F KP D Q+F L + + + ++ EE N
Sbjct: 492 VEDKNAKFMDNQPKGQNLPFMKPEDAQYFDKLLVDVNEDSLSPEELKERKIMKLLLTIKN 551
Query: 165 GLPSSRKIALRALTQKAPSFGAPLLFDSILPILLDKTLEDEEHQLMLKLMDRILFQLQDL 224
G P RK ALR +T KA FGA LF+ ILP+L+ TLED+E L++K++DR+L++L DL
Sbjct: 552 GSPPMRKSALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRVLYKLDDL 611
Query: 225 VKPYTHKLLIVLCPMLIDPVPLTRSTGRDIITTLAKAVGLPTMIYTMRPDLDHEDEYVRN 284
V+PY HK+L+V+ P+LID R GR+II+ LAKA GL TMI TMRPD+D+ DEYVRN
Sbjct: 612 VRPYVHKILVVIEPLLIDEDHYARIEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRN 671
Query: 285 TTARAMAVVSKAFGVSQTIPFLRLVCRSKKSWKARHTGIKIIQQIAILVGIGSLPYLDDL 344
TTARA AVV+ A G+ +PFL+ VC+SKKSW+ARHTGIKI+QQIAIL+G LP+L L
Sbjct: 672 TTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLKAL 731
Query: 345 IACIEKGFQDEHPPVRIIAAQTVSSLAQSCQPYGIERFNPVLEPLWRGVKQNRGRELAAF 404
+ IE G DE VR I A +++LA++ PYGIE F+ VL+PLW+G++ +RG+ LAAF
Sbjct: 732 VEIIEHGLVDEQQKVRTITALAIAALAEAATPYGIESFDSVLKPLWKGIRTHRGKGLAAF 791
Query: 405 LKALGFLIPLMDPEYASYYAEEVMKIVKREFNSPNEDMKKTVLFVIQKLSVTEGVTPQYL 464
LKA+G+LIPLMD EYA+YY EVM I+ REF SP+E+MKK VL V+++ T+GV PQY+
Sbjct: 792 LKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEPQYI 851
Query: 465 RKELAAEFFKQFWVRRSALDRQLNNIVTFTTVLLANKTGAAFTLEKLIYPLKDESEPFRT 524
++E+ FFK FW R ALDR+ + TTV +ANK GA+ + +++ LKDE+E +R
Sbjct: 852 KEEILPHFFKFFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRK 911
Query: 525 MGAHAVNRVVKALGMTDVXXXXXXXXXXXXXIAFQDQTNGERIVYRSIGTVAKSLNTRMK 584
M V +++ LG D+ AFQ+QT + ++ GT+ L R+K
Sbjct: 912 MVMETVEKIMGNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVK 971
Query: 585 PYISPVSSIILEHLKHKKPLVRTHAASLCALLIPVFKHCEETALINKFNIILFESLGEVY 644
PY+ + IL L +K VR AA L + + V K C+E L+ ++L+E LGE Y
Sbjct: 972 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEY 1031
Query: 645 PEVLXXXXXXXXXXXXQIRLTDLQPPPNQILLSLTPILRNNHPLVQESTVKLVGRIARRG 704
PEVL I +T + PP +L LTPIL+N H VQE+ + LVGRIA RG
Sbjct: 1032 PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1091
Query: 705 PEYVSPKEWMRICSELLEMLKSPVKSIRVAANRTFGYIAKAIGPQDVLVTLLNNLKVQER 764
PEYVS +EWMRIC ELLE+LK+ K+IR A TFGYIAKAIGP DVL TLLNNLKVQER
Sbjct: 1092 PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER 1151
Query: 765 QLRVNTSIAIGIVAKTCGPFVVIPALMNEYRTPDTNVQNGILKALAFILEYIGPMSKDYI 824
Q RV T++AI IVA++C PF V+PALMNEYR P+ NVQNG+LK+L+F+ EYIG M KDYI
Sbjct: 1152 QNRVCTTVAIAIVAESCRPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI 1211
Query: 825 YPLIPLLQDALTDRDLVHRQTAATCIKHLAFNCAGRGLEDAFIHCMNLLLPNVFETSPHV 884
Y + PLL+DAL DRDLVHRQTA + IKH++ G G EDA H +N + PN+FETSPH+
Sbjct: 1212 YAVCPLLEDALMDRDLVHRQTACSAIKHMSLGVYGFGCEDALTHLLNYVWPNIFETSPHL 1271
Query: 885 ISRILEGLEGLRMALGPGVSMNYAWGGLFHPAKNVRNAYWKLYNGAYVAQPDALVPYYP 943
+ ++ ++GLR++LGP + Y GLFHPA+ VR+ YWK+YN Y+ DAL+ YP
Sbjct: 1272 VQAFMDSVDGLRVSLGPIKILQYTLQGLFHPARKVRDVYWKIYNSLYIGGQDALIAGYP 1330
>Hs6912654 [A] KOG0213 Splicing factor 3b subunit 1
Length = 1304
Score = 834 bits (2155), Expect = 0.0
Identities = 423/823 (51%), Positives = 553/823 (66%)
Query: 121 NLQFFKPSDRQHFAILFDERSPEDMTEEERXXXXXXXXXXXXXNGLPSSRKIALRALTQK 180
NL F KP D Q+F L + ++ EE+ NG P RK ALR +T K
Sbjct: 463 NLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDK 522
Query: 181 APSFGAPLLFDSILPILLDKTLEDEEHQLMLKLMDRILFQLQDLVKPYTHKLLIVLCPML 240
A FGA LF+ ILP+L+ TLED+E L++K++DRIL++L DLV+PY HK+L+V+ P+L
Sbjct: 523 AREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLL 582
Query: 241 IDPVPLTRSTGRDIITTLAKAVGLPTMIYTMRPDLDHEDEYVRNTTARAMAVVSKAFGVS 300
ID R G +II+ LAKA GL TMI TMRPD+D+ DEYVRNTTARA AVV+ A G+
Sbjct: 583 IDEDYYARVEGLEIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIP 642
Query: 301 QTIPFLRLVCRSKKSWKARHTGIKIIQQIAILVGIGSLPYLDDLIACIEKGFQDEHPPVR 360
+PFL+ VC+SKKSW+ARHTGIKI+QQIAIL+G LP+L L+ IE G DE VR
Sbjct: 643 SLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR 702
Query: 361 IIAAQTVSSLAQSCQPYGIERFNPVLEPLWRGVKQNRGRELAAFLKALGFLIPLMDPEYA 420
I+A +++LA++ PYGIE F+ VL+PLW+G++Q+RG+ LAAFLKA+G+LIPLMD EYA
Sbjct: 703 TISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYA 762
Query: 421 SYYAEEVMKIVKREFNSPNEDMKKTVLFVIQKLSVTEGVTPQYLRKELAAEFFKQFWVRR 480
+YY EVM I+ REF SP+E+MKK VL V+++ T+GV Y++ E+ FFK FW R
Sbjct: 763 NYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHR 822
Query: 481 SALDRQLNNIVTFTTVLLANKTGAAFTLEKLIYPLKDESEPFRTMGAHAVNRVVKALGMT 540
ALDR+ + TTV LANK GAA + +++ LKDE+E +R M + +++ LG
Sbjct: 823 MALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAA 882
Query: 541 DVXXXXXXXXXXXXXIAFQDQTNGERIVYRSIGTVAKSLNTRMKPYISPVSSIILEHLKH 600
D+ AFQ+QT + ++ GTV +L R+KPY+ + +L L +
Sbjct: 883 DIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNN 942
Query: 601 KKPLVRTHAASLCALLIPVFKHCEETALINKFNIILFESLGEVYPEVLXXXXXXXXXXXX 660
K VR AA L + V K C+E L+ ++L+E LGE YPEVL
Sbjct: 943 KSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN 1002
Query: 661 QIRLTDLQPPPNQILLSLTPILRNNHPLVQESTVKLVGRIARRGPEYVSPKEWMRICSEL 720
I + + PP +L LTPIL+N H VQE+ + LVGRIA RG EYVS +EWMRIC EL
Sbjct: 1003 VIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFEL 1062
Query: 721 LEMLKSPVKSIRVAANRTFGYIAKAIGPQDVLVTLLNNLKVQERQLRVNTSIAIGIVAKT 780
LE+LK+ K+IR A TFGYIAKAIGP DVL TLLNNLKVQERQ RV T++AI IVA+T
Sbjct: 1063 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAET 1122
Query: 781 CGPFVVIPALMNEYRTPDTNVQNGILKALAFILEYIGPMSKDYIYPLIPLLQDALTDRDL 840
C PF V+PALMNEYR P+ NVQNG+LK+L+F+ EYIG M KDYIY + PLL+DAL DRDL
Sbjct: 1123 CSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 1182
Query: 841 VHRQTAATCIKHLAFNCAGRGLEDAFIHCMNLLLPNVFETSPHVISRILEGLEGLRMALG 900
VHRQTA+ ++H++ G G ED+ H +N + PNVFETSPHVI ++ LEGLR+A+G
Sbjct: 1183 VHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIG 1242
Query: 901 PGVSMNYAWGGLFHPAKNVRNAYWKLYNGAYVAQPDALVPYYP 943
P + Y GLFHPA+ VR+ YWK+YN Y+ DAL+ +YP
Sbjct: 1243 PCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYP 1285
>CE03641 [A] KOG0213 Splicing factor 3b subunit 1
Length = 1322
Score = 797 bits (2058), Expect = 0.0
Identities = 410/832 (49%), Positives = 541/832 (64%)
Query: 112 MVTEVPGVRNLQFFKPSDRQHFAILFDERSPEDMTEEERXXXXXXXXXXXXXNGLPSSRK 171
+V P L KP D Q+F L + +T+EE+ NG P RK
Sbjct: 472 LVDTQPKNAELPPLKPDDMQYFDKLLMDVDESQLTKEEKNEREIMEHLLKIKNGTPPMRK 531
Query: 172 IALRALTQKAPSFGAPLLFDSILPILLDKTLEDEEHQLMLKLMDRILFQLQDLVKPYTHK 231
LR +T+ A +GA LF+ ILP+L+ +LED+E LM+K++DRIL++L DLV+PY HK
Sbjct: 532 SGLRKITENARKYGAGPLFNQILPLLMSPSLEDQERHLMVKVIDRILYKLDDLVRPYVHK 591
Query: 232 LLIVLCPMLIDPVPLTRSTGRDIITTLAKAVGLPTMIYTMRPDLDHEDEYVRNTTARAMA 291
+L+V+ P+LID R GR+II+ LAKA GL TMI TMRPD+D+ DEYVRNTTARA A
Sbjct: 592 ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNVDEYVRNTTARAFA 651
Query: 292 VVSKAFGVSQTIPFLRLVCRSKKSWKARHTGIKIIQQIAILVGIGSLPYLDDLIACIEKG 351
VV+ A G+ +PFL+ VC+SKKSW+ARHTGIKI+QQ+AIL+G LP+L L+ +E G
Sbjct: 652 VVASALGIPALLPFLKAVCKSKKSWQARHTGIKIVQQMAILMGCAVLPHLKALVDIVESG 711
Query: 352 FQDEHPPVRIIAAQTVSSLAQSCQPYGIERFNPVLEPLWRGVKQNRGRELAAFLKALGFL 411
DE VR I A +++LA++ PYGIE F+ VL+PLW+G++ +RG+ LAAFLKA+G+L
Sbjct: 712 LDDEQQKVRTITALCLAALAEASSPYGIEAFDSVLKPLWKGIRMHRGKGLAAFLKAIGYL 771
Query: 412 IPLMDPEYASYYAEEVMKIVKREFNSPNEDMKKTVLFVIQKLSVTEGVTPQYLRKELAAE 471
IPLMD EYASYY EVM I+ REF SP+E+MKK VL V+++ T+GV Y+R E+
Sbjct: 772 IPLMDAEYASYYTREVMLILIREFASPDEEMKKIVLKVVKQCCATDGVEASYIRDEVLPS 831
Query: 472 FFKQFWVRRSALDRQLNNIVTFTTVLLANKTGAAFTLEKLIYPLKDESEPFRTMGAHAVN 531
FFK FW +R A+DR+ + TTV +A K G + +++ LKDE+E +R M +
Sbjct: 832 FFKAFWNQRMAMDRRNYRQLVDTTVEIAQKVGCVEMIARIVDDLKDENEQYRKMVMETIE 891
Query: 532 RVVKALGMTDVXXXXXXXXXXXXXIAFQDQTNGERIVYRSIGTVAKSLNTRMKPYISPVS 591
+V G TD+ AFQ+QT + ++ GT+ SL R K YI +
Sbjct: 892 NIVALQGATDIDARLEEQLIDGLLYAFQEQTQEDSVMLDGFGTICSSLGRRAKAYIPQIC 951
Query: 592 SIILEHLKHKKPLVRTHAASLCALLIPVFKHCEETALINKFNIILFESLGEVYPEVLXXX 651
IL L +K VR AA L A + PV CEE ++ ++L+E LGE YPEVL
Sbjct: 952 GTILWRLNNKSAKVRQQAADLIARIAPVMHMCEEEKMMGHMGVVLYEYLGEEYPEVLGSI 1011
Query: 652 XXXXXXXXXQIRLTDLQPPPNQILLSLTPILRNNHPLVQESTVKLVGRIARRGPEYVSPK 711
I +T + PP +L LTPIL+N H VQE+ + LVG IA RG E+VS +
Sbjct: 1012 LGALKAICNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGAIADRGSEFVSAR 1071
Query: 712 EWMRICSELLEMLKSPVKSIRVAANRTFGYIAKAIGPQDVLVTLLNNLKVQERQLRVNTS 771
EWMRIC ELLE+LK+ KSIR AA TFG+IAKAIGP DVL TLLNNLKVQERQLRV T+
Sbjct: 1072 EWMRICFELLELLKAHKKSIRRAAINTFGFIAKAIGPHDVLATLLNNLKVQERQLRVCTT 1131
Query: 772 IAIGIVAKTCGPFVVIPALMNEYRTPDTNVQNGILKALAFILEYIGPMSKDYIYPLIPLL 831
+AI IV++TC PF V+PA+MNEYR P+ NVQNG+LKAL+F+ EYIG M+KDYIY ++PLL
Sbjct: 1132 VAIAIVSETCAPFTVLPAIMNEYRVPEINVQNGVLKALSFMFEYIGEMAKDYIYAVVPLL 1191
Query: 832 QDALTDRDLVHRQTAATCIKHLAFNCAGRGLEDAFIHCMNLLLPNVFETSPHVISRILEG 891
DAL +RD VHRQ A + HLA G G EDA IH +N + PN+ E SPH+I R +
Sbjct: 1192 IDALMERDQVHRQIAVDAVAHLAIGVYGFGCEDALIHLLNYVWPNMLENSPHLIQRWVFA 1251
Query: 892 LEGLRMALGPGVSMNYAWGGLFHPAKNVRNAYWKLYNGAYVAQPDALVPYYP 943
EG+R++LGP + Y L+HPA+ VR WK++N + DAL+ YP
Sbjct: 1252 CEGMRVSLGPIKVLQYCLQALWHPARKVREPVWKVFNNLILGSADALIAAYP 1303
>ECU11g0900 [A] KOG0213 Splicing factor 3b subunit 1
Length = 903
Score = 146 bits (369), Expect = 1e-34
Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 4/258 (1%)
Query: 670 PPNQILLSLTPILRNNHPLVQESTVKLVGRIARRGPEY---VSPKEWMRICSELLEMLKS 726
P + I+ S+ PIL++ + S V L+ I PE + +EWMRI L++ L S
Sbjct: 616 PASGIIPSILPILKSKEQKIVASGVALLHTICMNSPEECEKIGVREWMRISYGLVDSLVS 675
Query: 727 PVKSIRVAANRTFGYIAKAIGPQDVLVTLLNNLKVQERQLRVNTSIAIGIVAKTCGPFVV 786
K +R A + G I++ +GPQ++L L++ L+ ++R R +S+ I +V + G F V
Sbjct: 676 WNKEMRRNATESLGCISRIVGPQEILDILMDGLESEDRHQRTGSSLGISVVGEYNGLFSV 735
Query: 787 IPALMNEYRTPDTNVQNGILKALAFILEYIGPMSKDYIYPLIPLLQDALTDRDLVHRQTA 846
+P L+++Y TP+ VQ GIL+A+ + S Y++ ++P+++DA+TD D +R
Sbjct: 736 LPTLLSDYETPNAFVQQGILRAMCHFFQRTHQASLKYVHSMLPMIEDAMTDEDPSYRSLG 795
Query: 847 ATCIKHLAFNCAGRGLE-DAFIHCMNLLLPNVFETSPHVISRILEGLEGLRMALGPGVSM 905
I+H+ N ++ + IH +NL+ N+ + P V E +E L
Sbjct: 796 MNLIRHIVLNHPPATMDIELAIHLLNLIWANILDPIPTVQQSFDECMESFATVLSSQAMY 855
Query: 906 NYAWGGLFHPAKNVRNAY 923
Y GLFHP+ VR Y
Sbjct: 856 KYVQQGLFHPSSTVRKRY 873
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,097,735
Number of Sequences: 60738
Number of extensions: 2027347
Number of successful extensions: 4964
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4906
Number of HSP's gapped (non-prelim): 13
length of query: 954
length of database: 30,389,216
effective HSP length: 116
effective length of query: 838
effective length of database: 23,343,608
effective search space: 19561943504
effective search space used: 19561943504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)