ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2509 check: MH A KOG0342 RNA processing and modification ATP-dependent RNA helicase pitchoune
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2509 848529 847039 -497
(497 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 820 0.0
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 722 0.0
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 582 e-166
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 577 e-164
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 548 e-156
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 507 e-143
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 503 e-142
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 393 e-109
Hs13514831 [A] KOG0343 RNA Helicase 329 5e-90
SPAC1093.05 [A] KOG0343 RNA Helicase 322 6e-88
At5g54910 [A] KOG0343 RNA Helicase 307 2e-83
CE25231 [A] KOG0343 RNA Helicase 293 3e-79
YJL033w [A] KOG0343 RNA Helicase 288 1e-77
7293369 [A] KOG0343 RNA Helicase 271 1e-72
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 266 5e-71
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 261 1e-69
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 255 1e-67
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 246 6e-65
7299006 [A] KOG0345 ATP-dependent RNA helicase 241 2e-63
CE00337 [A] KOG0330 ATP-dependent RNA helicase 236 4e-62
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 231 2e-60
YLL008w [A] KOG0338 ATP-dependent RNA helicase 230 4e-60
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 228 2e-59
CE03821 [A] KOG0345 ATP-dependent RNA helicase 227 3e-59
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 227 3e-59
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 222 1e-57
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 220 3e-57
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 220 3e-57
YHR065c [A] KOG0330 ATP-dependent RNA helicase 219 7e-57
7298752 [A] KOG0330 ATP-dependent RNA helicase 219 7e-57
ECU10g1680 [A] KOG0343 RNA Helicase 218 1e-56
7293348 [A] KOG0348 ATP-dependent RNA helicase 216 6e-56
7304081 [A] KOG0338 ATP-dependent RNA helicase 215 1e-55
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 215 1e-55
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 211 2e-54
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 211 3e-54
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 207 2e-53
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 204 2e-52
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 204 2e-52
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 202 1e-51
CE27030 [A] KOG0338 ATP-dependent RNA helicase 194 3e-49
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 194 3e-49
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 190 5e-48
YFL002c [A] KOG0345 ATP-dependent RNA helicase 189 6e-48
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 187 3e-47
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 187 4e-47
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 186 9e-47
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 186 9e-47
7303950 [A] KOG0340 ATP-dependent RNA helicase 186 9e-47
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 185 2e-46
7295314 [A] KOG0331 ATP-dependent RNA helicase 184 3e-46
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 182 8e-46
CE28369 [A] KOG0335 ATP-dependent RNA helicase 181 2e-45
CE24451 [A] KOG0335 ATP-dependent RNA helicase 181 2e-45
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 181 2e-45
YHR169w [A] KOG0340 ATP-dependent RNA helicase 181 3e-45
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 181 3e-45
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 181 3e-45
CE27553 [A] KOG0337 ATP-dependent RNA helicase 180 4e-45
Hs22041318 [A] KOG0342 ATP-dependent RNA helicase pitchoune 180 5e-45
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 179 6e-45
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 179 8e-45
7296646 [A] KOG0331 ATP-dependent RNA helicase 179 8e-45
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 179 1e-44
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 178 1e-44
7290853 [A] KOG0331 ATP-dependent RNA helicase 178 2e-44
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 177 3e-44
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 177 4e-44
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 177 4e-44
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 177 4e-44
7298204 [A] KOG0335 ATP-dependent RNA helicase 176 6e-44
7296891 [A] KOG0341 DEAD-box protein abstrakt 176 6e-44
YNL112w [A] KOG0331 ATP-dependent RNA helicase 176 7e-44
YKR024c [A] KOG0348 ATP-dependent RNA helicase 176 7e-44
7299061 [A] KOG0335 ATP-dependent RNA helicase 175 1e-43
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 175 2e-43
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 174 2e-43
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 174 4e-43
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 174 4e-43
At1g20920 [A] KOG0334 RNA helicase 173 5e-43
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 173 5e-43
YDL160c [A] KOG0326 ATP-dependent RNA helicase 172 8e-43
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 172 8e-43
CE18785 [A] KOG0331 ATP-dependent RNA helicase 172 8e-43
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 172 8e-43
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 172 8e-43
CE23832 [A] KOG0341 DEAD-box protein abstrakt 172 1e-42
YGL078c [A] KOG0331 ATP-dependent RNA helicase 172 1e-42
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 172 1e-42
CE23814 [A] KOG0340 ATP-dependent RNA helicase 171 2e-42
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 171 2e-42
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 171 2e-42
7294797 [A] KOG0339 ATP-dependent RNA helicase 171 2e-42
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 171 3e-42
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 170 4e-42
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 170 4e-42
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 169 9e-42
CE07736 [A] KOG0335 ATP-dependent RNA helicase 169 1e-41
SPCC10H11.01 [A] KOG0334 RNA helicase 168 2e-41
Hs7662318 [A] KOG0334 RNA helicase 168 2e-41
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 168 2e-41
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 167 3e-41
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 167 3e-41
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 167 3e-41
CE17559 [A] KOG0339 ATP-dependent RNA helicase 166 6e-41
YDL031w [A] KOG0337 ATP-dependent RNA helicase 166 7e-41
7293060 [A] KOG0334 RNA helicase 166 1e-40
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 165 1e-40
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 165 1e-40
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 2e-40
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 164 3e-40
YPL119c [A] KOG0335 ATP-dependent RNA helicase 164 4e-40
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 4e-40
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 4e-40
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 163 5e-40
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 163 6e-40
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 162 8e-40
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 162 1e-39
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 162 1e-39
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 162 1e-39
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 161 2e-39
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 161 2e-39
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 160 3e-39
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 160 4e-39
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 160 4e-39
CE09012 [A] KOG0335 ATP-dependent RNA helicase 159 7e-39
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 159 9e-39
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 159 1e-38
YOR204w [A] KOG0335 ATP-dependent RNA helicase 158 2e-38
YBR237w [A] KOG0334 RNA helicase 158 2e-38
SPBC4F6.07c [A] KOG0347 RNA helicase 158 2e-38
7298989 [A] KOG0336 ATP-dependent RNA helicase 158 2e-38
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 158 2e-38
CE00839 [A] KOG0326 ATP-dependent RNA helicase 157 3e-38
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 156 8e-38
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 155 1e-37
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 155 1e-37
CE25121 [A] KOG0335 ATP-dependent RNA helicase 155 1e-37
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 155 2e-37
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 154 2e-37
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 154 3e-37
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 154 3e-37
CE28031 [A] KOG0334 RNA helicase 154 3e-37
CE27427 [A] KOG0334 RNA helicase 154 3e-37
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 154 3e-37
7297629 [A] KOG0326 ATP-dependent RNA helicase 154 3e-37
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 154 4e-37
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 152 9e-37
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 152 1e-36
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 150 4e-36
At3g09620 [A] KOG0334 RNA helicase 150 4e-36
7296990 [A] KOG0329 ATP-dependent RNA helicase 150 4e-36
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 150 6e-36
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 150 6e-36
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 148 2e-35
YDL084w [A] KOG0329 ATP-dependent RNA helicase 147 4e-35
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 146 6e-35
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 146 6e-35
CE11190 [A] KOG0347 RNA helicase 145 1e-34
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 145 1e-34
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 145 1e-34
CE22474 [A] KOG0336 ATP-dependent RNA helicase 144 2e-34
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 144 4e-34
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 144 4e-34
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 143 5e-34
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 143 5e-34
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 142 1e-33
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 142 1e-33
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 142 2e-33
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 142 2e-33
CE03025 [A] KOG0329 ATP-dependent RNA helicase 140 6e-33
At3g16840 [A] KOG0347 RNA helicase 140 6e-33
YGL171w [A] KOG0344 ATP-dependent RNA helicase 139 1e-32
YBR142w [A] KOG0347 RNA helicase 138 2e-32
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 136 6e-32
CE29052 [A] KOG0335 ATP-dependent RNA helicase 135 1e-31
SPCC1494.06c [A] KOG0346 RNA helicase 134 2e-31
Hs9966805 [A] KOG0347 RNA helicase 134 4e-31
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 133 7e-31
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 132 9e-31
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 131 3e-30
At4g34910 [A] KOG0346 RNA helicase 131 3e-30
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 130 3e-30
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 129 8e-30
Hs9506931 [A] KOG0346 RNA helicase 129 1e-29
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 126 7e-29
CE06239 [A] KOG0344 ATP-dependent RNA helicase 125 1e-28
7294824 [K] KOG4284 DEAD box protein 125 2e-28
7293941 [A] KOG0344 ATP-dependent RNA helicase 125 2e-28
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 122 2e-27
7302399 [A] KOG0347 RNA helicase 121 2e-27
7295505 [A] KOG0346 RNA helicase 121 3e-27
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 120 4e-27
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 120 5e-27
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 120 6e-27
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 119 8e-27
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 119 1e-26
YOR046c [A] KOG0332 ATP-dependent RNA helicase 116 7e-26
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 116 9e-26
CE11402 [A] KOG0334 RNA helicase 115 1e-25
YLR276c [A] KOG0346 RNA helicase 115 2e-25
7296165 [A] KOG0330 ATP-dependent RNA helicase 115 2e-25
CE29051 [A] KOG0335 ATP-dependent RNA helicase 113 6e-25
Hs14251212 [K] KOG4284 DEAD box protein 113 7e-25
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 112 1e-24
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 110 4e-24
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 110 4e-24
CE27728 [A] KOG0346 RNA helicase 110 6e-24
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 107 3e-23
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 106 7e-23
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 105 1e-22
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 105 2e-22
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 105 2e-22
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 105 2e-22
CE28485 [K] KOG4284 DEAD box protein 102 1e-21
CE18221 [A] KOG0332 ATP-dependent RNA helicase 102 1e-21
CE18220 [A] KOG0332 ATP-dependent RNA helicase 102 1e-21
CE18219 [A] KOG0332 ATP-dependent RNA helicase 102 1e-21
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 100 9e-21
CE26264 [A] KOG0335 ATP-dependent RNA helicase 99 2e-20
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 97 6e-20
Hs22045464 [A] KOG0343 RNA Helicase 96 9e-20
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 94 5e-19
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 85 2e-16
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 83 8e-16
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 83 8e-16
CE27336 [A] KOG0334 RNA helicase 81 3e-15
7290730 [A] KOG0331 ATP-dependent RNA helicase 79 2e-14
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 77 8e-14
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 68 3e-11
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 68 4e-11
CE28975 [A] KOG0335 ATP-dependent RNA helicase 66 1e-10
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 65 3e-10
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 65 3e-10
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 64 5e-10
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 62 2e-09
CE27320 [A] KOG0335 ATP-dependent RNA helicase 61 3e-09
CE15167 [A] KOG0335 ATP-dependent RNA helicase 61 4e-09
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 58 4e-08
YGL064c [A] KOG0335 ATP-dependent RNA helicase 55 2e-07
CE06825 [A] KOG0335 ATP-dependent RNA helicase 50 6e-06
7296602 [A] KOG0334 RNA helicase 50 6e-06
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 820 bits (2119), Expect = 0.0
Identities = 420/498 (84%), Positives = 443/498 (88%), Gaps = 6/498 (1%)
Query: 4 NKRVRDAES-EQDHAETETVVKDTATTGEVEGS-----FSDLKLSDGTMKAIGKMGFTQM 57
NKR RD+ES E+ + ++ K E E + F +LKLS T+KAI KMGFT M
Sbjct: 6 NKRSRDSESTEEPVVDEKSTSKQNNAAPEGEQTTCVEKFEELKLSQPTLKAIEKMGFTTM 65
Query: 58 TAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRE 117
T+VQ RTIPPLLAG+DVLGAAKTGSGKTLAFLIPAIE+LHSLKFKPRNGTG+IVITPTRE
Sbjct: 66 TSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRE 125
Query: 118 LALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGF 177
LALQIFGVARELMEFHSQTFGIVIGGANRRQEA+KLMKGVN+LIATPGRLLDHLQNTKGF
Sbjct: 126 LALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGF 185
Query: 178 IFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRP 237
+FKNLKAL+IDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRP
Sbjct: 186 VFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRP 245
Query: 238 GPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYY 297
GPLFINV E D STADGLEQGYVVC+SDKR KRNQKKK+IVFLSSCNSVKYY
Sbjct: 246 GPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYY 305
Query: 298 AELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFD 357
AELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL+CTDVAARGLDIPAVDWIIQFD
Sbjct: 306 AELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFD 365
Query: 358 PPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANV 417
PPDDPRDYIHRV SLMFLTP ELGFLRYLKA+KVPLNEYEFP NKIANV
Sbjct: 366 PPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFLRYLKASKVPLNEYEFPENKIANV 425
Query: 418 QAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKV 477
Q+QLEKLIKSNYYLHQ AKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKV
Sbjct: 426 QSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKV 485
Query: 478 NITIGASGKTPATKKRRT 495
NITIGASGKTP TK+R+T
Sbjct: 486 NITIGASGKTPNTKRRKT 503
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 722 bits (1863), Expect = 0.0
Identities = 358/485 (73%), Positives = 421/485 (85%), Gaps = 2/485 (0%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
D E+E + + ++V + ++T ++E FSDL+LS+ KAI +MGF MT +Q R+IPPL
Sbjct: 66 DNENEDERVQ-KSVNLNASSTSDIE-KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPL 123
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARE 128
LAG+DVLGAAKTGSGKTLAFLIP IEML++LKFKPRNGTGVI+I+PTRELALQIFGVA+E
Sbjct: 124 LAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKE 183
Query: 129 LMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVID 188
L+++H QTFGIVIGGANRR EADKL+KGVN+L+ATPGRLLDHLQNTKGF+F+NL++LVID
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVID 243
Query: 189 EADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEK 248
EADRILEIGFEDEMRQI+KILP+E+RQ++LFSATQTTKVEDLARISL+PGPL++NVDS K
Sbjct: 244 EADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGK 303
Query: 249 DTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPV 308
TST +GLEQGYVV +SDKR KRN KKKVIVF+SSC SVKY AELLNYIDLPV
Sbjct: 304 PTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPV 363
Query: 309 LELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
L+LHGKQKQQ+RTNTFFEFCNAE+GIL+CT+VAARGLDIPAVDWI+Q+DPPDDPRDYIHR
Sbjct: 364 LDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHR 423
Query: 369 VXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSN 428
V SLMFL P+ELGFLRYLK AKV LNE+EFP NK+ANVQ+QLEKL+ N
Sbjct: 424 VGRTARGTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKN 483
Query: 429 YYLHQIAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGKTP 488
YYL Q AKDGYRSYLQAYAS+SLK+++ I+KLDLAKVAKS+GF PP VNITIGASG+T
Sbjct: 484 YYLQQSAKDGYRSYLQAYASYSLKSIFDINKLDLAKVAKSFGFAHPPNVNITIGASGRTD 543
Query: 489 ATKKR 493
++R
Sbjct: 544 KKERR 548
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 582 bits (1500), Expect = e-166
Identities = 275/460 (59%), Positives = 368/460 (79%), Gaps = 3/460 (0%)
Query: 35 SFSDLK--LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPA 92
SF+ LK +S+ T++AI +MGFT+MT +Q++++ PLL G+D++GAA+TGSGKTLAFLIPA
Sbjct: 169 SFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 228
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADK 152
+E+++ L+F PRNGTGVI+I+PTREL++Q FGV +ELM H T+G+V+GG+NR+ E++K
Sbjct: 229 VELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEK 288
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNE 212
L KG+NIL+ATPGRLLDHLQN+ F++KNL+ L+IDE DRILEIGFE+E++QII +LP
Sbjct: 289 LGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 348
Query: 213 DRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXX 272
RQ+MLFSATQT ++E L++++L+ P+++ V +DT+T DGLEQGY+VC S+KR
Sbjct: 349 -RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVL 407
Query: 273 XXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAER 332
K+N+KKKV+VF SSC SVKY+ EL NYIDLPV +HGKQKQ KRT TFF+FCNAE
Sbjct: 408 FTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAES 467
Query: 333 GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELG 392
GIL+CTDVAARGLDIP VDWI+Q+DPPDDPR+YIHRV +L+ + P ELG
Sbjct: 468 GILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELG 527
Query: 393 FLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLK 452
FLRYLKAAKVPLNE+EF KIA++Q QLEKLI NY+L+Q AK+ ++SY++AY SH LK
Sbjct: 528 FLRYLKAAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLK 587
Query: 453 TVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGKTPATKK 492
++ ++ LDL VAKS+GF VPP V++ +GA+ + K+
Sbjct: 588 QIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPEKR 627
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 577 bits (1486), Expect = e-164
Identities = 279/475 (58%), Positives = 371/475 (77%), Gaps = 4/475 (0%)
Query: 13 EQDHAETETVVKDTATTGEVEG-SFSDL--KLSDGTMKAIGKMGFTQMTAVQTRTIPPLL 69
+ D E+E TG E SF+ L +++ T+KAI +MGFT MT +Q ++I PLL
Sbjct: 155 DNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL 214
Query: 70 AGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVAREL 129
G+D+L AAKTGSGKTLAFLIPA+E++ L+F RNGTGV++++PTRELA+Q FGV +EL
Sbjct: 215 EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGVLILSPTRELAMQTFGVLKEL 274
Query: 130 MEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDE 189
M H T+G+++GG+NR EA KL G+NI++ATPGRLLDH+QNT GF++KNL+ LVIDE
Sbjct: 275 MTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 334
Query: 190 ADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKD 249
ADRIL++GFE+E++QIIK+LP RQ+MLFSATQT KVEDLARISL+ PL++ VD +K
Sbjct: 335 ADRILDVGFEEELKQIIKLLPTR-RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 393
Query: 250 TSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVL 309
+T DGLEQGYVVC S+KR K+N+KKK++VF SSC SVKY+ ELLNYIDLPVL
Sbjct: 394 NATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVL 453
Query: 310 ELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+HGKQKQ KRT TFF+FCNA+ G L+CTDVAARGLDIP VDWI+Q+DPPDDP++YIHRV
Sbjct: 454 AIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRV 513
Query: 370 XXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNY 429
+L+ L P ELGFLRYLK +KVPL+E++F +KI+++Q+QLEKLI+ NY
Sbjct: 514 GRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNY 573
Query: 430 YLHQIAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGAS 484
+LH+ A++ Y+SY++AY SHSLK ++ ++ L+L +VA S+GF VPP V++ + ++
Sbjct: 574 FLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSN 628
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 548 bits (1413), Expect = e-156
Identities = 269/490 (54%), Positives = 362/490 (72%), Gaps = 7/490 (1%)
Query: 5 KRVRDAESEQDHAETETVVKDTATTGEVEGSFSDL--KLSDGTMKAIGKMGFTQMTAVQT 62
+ V + + Q +ET V + T + +F+ L K++ +KA+ +GFT MT +Q
Sbjct: 41 EEVEEEQKHQTEESSETKVSEFLT----KTTFASLEGKVNANLLKAVQGLGFTTMTEIQA 96
Query: 63 RTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQI 122
++I PLL GKDVL +AKTGSGKTLAFL+PAIE+LH L +K NGTGVI+++PTREL++Q
Sbjct: 97 KSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQT 156
Query: 123 FGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNL 182
+GV EL+E + T+G+V+GG+NR E DKL KGV+IL+ATPGRLLDHLQNT F+ +N+
Sbjct: 157 YGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNM 216
Query: 183 KALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFI 242
K L+IDEADRIL+IGFE EM+Q+++ LP + RQSMLFSAT + KV++L +++L P+ +
Sbjct: 217 KCLIIDEADRILDIGFEIEMQQVLRHLPKQ-RQSMLFSATHSPKVDELVKLALHSNPVRV 275
Query: 243 NVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLN 302
+V + + +T +GL+QGY+V SDKR K+N+ KKV+VF SSCNSVK++ ELLN
Sbjct: 276 SVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLN 335
Query: 303 YIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDP 362
YID+P + +HGKQKQQKRT TFF+FC AE GIL+CTDVAARGLDIPAVDWI+Q+DP D+P
Sbjct: 336 YIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEP 395
Query: 363 RDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLE 422
R+YIHRV +L+ L P ELGFLRYLKAAKV LNE+EF +K+AN+Q+QLE
Sbjct: 396 REYIHRVGRTARGTNGSGKALLVLRPEELGFLRYLKAAKVTLNEFEFSWSKVANIQSQLE 455
Query: 423 KLIKSNYYLHQIAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIG 482
LI NYYL++ AK+ Y+ YL+AY SHSLK ++ + +DL V+KS+GF VPP V++ I
Sbjct: 456 NLISKNYYLNKSAKEAYKCYLRAYDSHSLKDIFDVTNMDLTAVSKSFGFSVPPFVDLPIS 515
Query: 483 ASGKTPATKK 492
K K
Sbjct: 516 NKPKVEIRSK 525
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 507 bits (1306), Expect = e-143
Identities = 262/492 (53%), Positives = 348/492 (70%), Gaps = 8/492 (1%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEG-SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPP 67
+A+SE++ E + K T + +F L LSD T K+I +MGF +MT +Q + IPP
Sbjct: 128 EAKSEEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPP 187
Query: 68 LLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVAR 127
L+ G+DVLGAA+TGSGKTLAFLIPA+E+L+ +KF PRNGTGV+VI PTRELA+Q +GVA+
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAK 247
Query: 128 ELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVI 187
EL+++HSQT G VIGG R+ EA+ L KGVN+L+ATPGRLLDHL+NT GFIFKNLK LV+
Sbjct: 248 ELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVM 307
Query: 188 DEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSE 247
DEADRILE FE+++++I+ +LP + RQ+ LFSATQ+ KVEDLAR+SL P++I+VD
Sbjct: 308 DEADRILEQNFEEDLKKILNLLP-KTRQTSLFSATQSAKVEDLARVSL-TSPVYIDVDEG 365
Query: 248 KDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQ-KKKVIVFLSSCNSVKYYAELLNYIDL 306
+ T +GLEQGY V S R KR Q KKK++VF S+C S K++AEL YI
Sbjct: 366 RKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKF 425
Query: 307 PVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYI 366
LE+ G Q KRT TF +F AE GIL+CT+VAARGLD P VDWI+Q+DPPD+P DYI
Sbjct: 426 DCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYI 485
Query: 367 HRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIK 426
HRV +L+ LTP EL F++YLKAAK+P+ E+EF K+ +V+ +E LI
Sbjct: 486 HRVGRTARGEGAKGKALLVLTPQELKFIQYLKAAKIPVEEHEFEEKKLLDVKPFVENLIS 545
Query: 427 SNYYLHQIAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASG- 485
NY L + AK+ Y++Y+ Y SHS+K V+ + +L+L +VA S+GF PPKV + I G
Sbjct: 546 ENYALKESAKEAYKTYISGYDSHSMKDVFNVHQLNLTEVATSFGFSDPPKVALKIDRGGY 605
Query: 486 ---KTPATKKRR 494
+ P K +R
Sbjct: 606 RSKREPVNKFKR 617
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 503 bits (1295), Expect = e-142
Identities = 256/464 (55%), Positives = 337/464 (72%), Gaps = 3/464 (0%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F L LS+ T AI +MGF MT +Q +I PLL GKDVLGAA+TGSGKTLAFLIPA+E
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
+L +F PRNGTGVIVI PTRELA+Q VA EL++ HSQT +VIGG NRR EA ++
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIA 209
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214
G N++IATPGRLLDHLQNTK FI+K+LK LVIDEADRILE FE++M +I+KILP + R
Sbjct: 210 SGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILP-KTR 268
Query: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXX 274
Q+ LFSATQT+KV+DLAR+SL P+ ++VD + T +GLEQGY V S +R
Sbjct: 269 QTALFSATQTSKVKDLARVSLT-SPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLIS 327
Query: 275 XXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 334
K+N KK++VF S+C SV+++ E++ D+ V ++HG Q +RT TFF+F A++GI
Sbjct: 328 FLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGI 387
Query: 335 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFL 394
L+CTDVAARGLDIP+VDWIIQ+DPPD P +YIHRV +L+ L P EL F+
Sbjct: 388 LLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFI 447
Query: 395 RYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKTV 454
RYLKAAKVP+ E EF +++NVQ+ LEK + +Y L+++AKD YR+YL AY SHSLK +
Sbjct: 448 RYLKAAKVPVKELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDI 507
Query: 455 YQIDKLDLAKVAKSYGFPVPPKVNITI-GASGKTPATKKRRTKD 497
+ + +LDL VA+S+ F PPKVN+ I +GK +K++ ++
Sbjct: 508 FNVHRLDLLAVAESFCFSSPPKVNLNIESGAGKVRKARKQQGRN 551
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 393 bits (1009), Expect = e-109
Identities = 210/437 (48%), Positives = 288/437 (65%), Gaps = 54/437 (12%)
Query: 11 ESEQDHAETETVVKDTATTGEVEGSFSDLK--LSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
++E+D+ E ++ + T + SF+ L +++ T+KAI +M F MT +Q +TI L
Sbjct: 345 DNEEDNREVPSL-RLRLTGAFDDTSFASLSNLVNENTLKAIKEMSFMNMTEIQHKTIRSL 403
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARE 128
L G+D+L AAKTGS +E+ LKF P N GV +++PTRELA+QIFG A
Sbjct: 404 LEGRDLLAAAKTGS----------VELTVKLKFMPTNRPGVFILSPTRELAMQIFGGANT 453
Query: 129 LMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVID 188
H T+G+++GG N EA KL G+NI++ATPG LLD++QNT GF++KNL+ LVID
Sbjct: 454 ---HHMHTYGLIMGGDNTSAEAQKLANGINIIVATPGHLLDYMQNTPGFMYKNLQYLVID 510
Query: 189 EADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEK 248
EADRIL++GFE+E++QIIK+LP R +ML SATQT KVEDLARISL+ G +
Sbjct: 511 EADRILDVGFEEELKQIIKLLPT-CRHTMLLSATQTRKVEDLARISLKKGAI-------- 561
Query: 249 DTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPV 308
+N+K+K++VF SS SVKY+ ELLNY+DLP+
Sbjct: 562 -----------------------------KNRKRKIMVFFSSSMSVKYHYELLNYMDLPI 592
Query: 309 LELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
L +HGKQKQ K T TFF+FC A+ GIL+C DVAARGLDIP VDWI+Q DP DDP++YIHR
Sbjct: 593 LAIHGKQKQNKGTTTFFQFCKADSGILLCMDVAARGLDIPEVDWIVQHDPLDDPKEYIHR 652
Query: 369 VXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSN 428
V L+ L P E+GFL YLK +K PL+E++F +KI+++Q+QLEKLI+ N
Sbjct: 653 VSRTARGLNGRGHVLLILCPEEMGFLHYLKQSKFPLSEFDFSWSKISDIQSQLEKLIEKN 712
Query: 429 YYLHQIAKDGYRSYLQA 445
+LH+ A++ Y+SY +A
Sbjct: 713 CFLHKAAQEAYKSYTRA 729
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 329 bits (844), Expect = 5e-90
Identities = 182/444 (40%), Positives = 272/444 (60%), Gaps = 6/444 (1%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
FSD LS T+K + + + +T +Q +TI L GKDVLGAAKTGSGKTLAFL+P +E
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L+ L++ +G GV++I+PTRELA Q F V R++ + H + G++IGG + + EA+++
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 189
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
+NIL+ TPGRLL H+ T F +L+ LV+DEADRIL++GF D M +I+ LP + RQ
Sbjct: 190 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK-RQ 248
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXX 275
++LFSATQT V+DLAR+SL+ P ++ V + ST LEQ Y+VCE ++
Sbjct: 249 TLLFSATQTKSVKDLARLSLK-NPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSF 307
Query: 276 XKRNQKKKVIVFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAERG 333
+ + KKK IVF SSC V+Y + + + +L LHG+Q+Q +R + EF
Sbjct: 308 LRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAA 367
Query: 334 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGF 393
+L TD+AARGLD PAV+W++QFD P+D YIHR +L+ L P+E
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHR-AGRTARYKEDGEALLILLPSEKAM 426
Query: 394 LRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKT 453
++ L KVP+ E + K+ +VQ +LE ++ + L + A+ + SY+++ K
Sbjct: 427 VQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKE 486
Query: 454 VYQIDKLDLAKVAKSYGFPVPPKV 477
V+ + KL + + A S G V P+V
Sbjct: 487 VFDVSKLPIPEYALSLGLAVAPRV 510
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 322 bits (826), Expect = 6e-88
Identities = 182/476 (38%), Positives = 272/476 (56%), Gaps = 6/476 (1%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTR 63
++ R+ + +++ E E + E F++L L+ T A+ F +T +Q +
Sbjct: 9 SREAREKKRKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQ 68
Query: 64 TIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIF 123
IP L G+D+LGAAKTGSGKTLAF++P IE L+ K+ +G G +VI+PTRELA+Q F
Sbjct: 69 CIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTF 128
Query: 124 GVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLK 183
++ HS + G++IGG N ++E ++L + +NIL+ TPGRLL H+ F L+
Sbjct: 129 ETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQ 187
Query: 184 ALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFIN 243
L++DEADRIL++GF + I+ LP RQ+MLFSATQT V+DLAR+SL+ P FI+
Sbjct: 188 MLILDEADRILDMGFRTTLDAIVSSLP-VHRQTMLFSATQTKSVKDLARLSLQ-NPDFIS 245
Query: 244 VDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNY 303
V +ST L Q Y+ ++ + + K K IVFLSSC V++ E
Sbjct: 246 VHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRR 305
Query: 304 I--DLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDD 361
+ + +L LHGKQKQ RT +F ++ +L CTD+ ARGLD PAVDW+IQ D P+D
Sbjct: 306 MRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPED 365
Query: 362 PRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQL 421
YIHRV +L+ L P+E FL+ L++ K+ + K +++ QL
Sbjct: 366 VDTYIHRV-GRTARYNRSGNALLLLLPSEEAFLKRLESKKIAVERINVKDGKKTSIRNQL 424
Query: 422 EKLIKSNYYLHQIAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKV 477
+ L + + I + + SYL++ K V+Q+DKL + A S G P PK+
Sbjct: 425 QNLCFKDNDIKYIGQKAFISYLRSIYLQKDKDVFQLDKLPVEAFADSLGLPGTPKI 480
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 307 bits (787), Expect = 2e-83
Identities = 173/448 (38%), Positives = 260/448 (57%), Gaps = 7/448 (1%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F+ L +SD T + + + MT VQ+ IP L G+D+LGAA+TGSGKTLAF+IP +E
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
LH ++ P +G G I+I+PTRELA Q FGV ++ +FH + G++IGG + +
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVH 192
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
+NIL+ PGRLL H+ T F L+ L++DEADR+L+ F+ ++ II LP + RQ
Sbjct: 193 EMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLP-KHRQ 251
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXX 275
++LFSATQT KV+DLAR+SLR P +I+V +E T+T L Q ++ +K+
Sbjct: 252 TLLFSATQTKKVKDLARLSLR-DPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSF 310
Query: 276 XKRNQKKKVIVFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAERG 333
K + +++VFLS+ VK+ E N + +P+ LHGK Q+KR + +F +
Sbjct: 311 IKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIE-RQS 369
Query: 334 ILVCTDVAARGLDI-PAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELG 392
+L CTDV ARGLD AVDW++Q D P+D YIHRV SL+FLTP+E
Sbjct: 370 VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRV-GRTARFYTQGKSLLFLTPSEEK 428
Query: 393 FLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLK 452
+ L+ AKVP+ + K+ V L L+ L +A+ + +YL++ K
Sbjct: 429 MIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKRRDK 488
Query: 453 TVYQIDKLDLAKVAKSYGFPVPPKVNIT 480
++ + KL + + S G P+ P++ T
Sbjct: 489 EIFDVSKLSIENFSASLGLPMTPRIRFT 516
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 293 bits (751), Expect = 3e-79
Identities = 162/444 (36%), Positives = 253/444 (56%), Gaps = 5/444 (1%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F D LS T++ + +T+ T +Q TI L G DV+GAAKTGSGKTLA +IP +E
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L K+ P G G ++I+PTRELALQ F + H + G+VIGG++ E +++
Sbjct: 138 LWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI-S 196
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
G+NI++ TPGRLL H+ +L+ LV+DEADR+L++GF ++ II LP E RQ
Sbjct: 197 GINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAE-RQ 255
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXX 275
++LFSATQT V+DL R+ P+F++V +T D L+Q YV+ E + +
Sbjct: 256 TLLFSATQTRNVKDLCRVCTND-PVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSF 314
Query: 276 XKRNQKKKVIVFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAERG 333
+ ++KKK +VF+SSC ++ E + + LPV+ L G Q+KR TF +F ++
Sbjct: 315 IEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAA 374
Query: 334 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGF 393
+L+ TDVA+RGLD +DW+IQ D P DYIHRV LM E
Sbjct: 375 VLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAM 434
Query: 394 LRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKT 453
+ L+ +P+ E + + +++V+ +L ++ + L + A+ +YL++ + K
Sbjct: 435 IGKLEKHSIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKK 494
Query: 454 VYQIDKLDLAKVAKSYGFPVPPKV 477
V+ ++ +D A +A S+G P+V
Sbjct: 495 VFDVEAIDAAALADSFGLVSVPRV 518
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 288 bits (737), Expect = 1e-77
Identities = 173/452 (38%), Positives = 260/452 (57%), Gaps = 11/452 (2%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F DL +SD T+K + + F ++T +Q +IP L G DVL AAKTGSGKTLAFL+P IE
Sbjct: 43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L+ K+ +G G ++I+PTRELA+QI+ V ++ S + G+VIGG + + E +++ +
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
+NILI TPGR+L HL G NL+ LV+DEADR L++GF+ + I+ L + RQ
Sbjct: 163 -INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTL-SPSRQ 220
Query: 216 SMLFSATQTTKVEDLARISLRPGPL-----FINVDSEKDTSTADGLEQGYVVCESDKRXX 270
++LFSATQ+ V DLAR+SL ++ K+ ST + L+Q Y+ +
Sbjct: 221 TLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLD 280
Query: 271 XXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYID--LPVLELHGKQKQQKRTNTFFEFC 328
K + K K+IVFLSS V + E + + ++ LHG+QKQ+ RT T +F
Sbjct: 281 ILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFN 340
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTP 388
A++ L TDV ARG+D PAVDW++Q D P+D YIHRV SL+ LTP
Sbjct: 341 RAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRV-GRCARYGKKGKSLIMLTP 399
Query: 389 TEL-GFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYA 447
E FL+ L A K+ + +K +++ QL+ L+ + L + + + SY+++
Sbjct: 400 QEQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQLQSLLFKDPELKYLGQKAFISYVRSIY 459
Query: 448 SHSLKTVYQIDKLDLAKVAKSYGFPVPPKVNI 479
K V++ D+L + A S G P PK+ +
Sbjct: 460 VQKDKQVFKFDELPTEEFAYSLGLPGAPKIKM 491
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 271 bits (694), Expect = 1e-72
Identities = 178/500 (35%), Positives = 270/500 (53%), Gaps = 33/500 (6%)
Query: 5 KRVRDAESEQDHAETETVVKDTATT-GEVEGS----FSDLKLSDGTMKAIGKMGFTQMTA 59
KR R ++ A TE ++D T E++ + F+ LS T KA+ + F T
Sbjct: 38 KRPRQEINKSRLAATEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQ 97
Query: 60 VQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELA 119
VQ +I P L GKDVLGAA TGSGKTLAFLIP +E L K+ +G G I+I+PTRELA
Sbjct: 98 VQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISPTRELA 157
Query: 120 LQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIF 179
QIF +++ + H + G++IGG N + E + M NILI TPGRLL H+ F
Sbjct: 158 YQIFETLKKVGKHHDFSAGLIIGGKNLKFERTR-MDQCNILICTPGRLLQHMDENPLFNT 216
Query: 180 KNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGP 239
++ LV+DEADR L++GF+ + II+ P RQ++LFSATQT V+DLAR++L+ P
Sbjct: 217 STMEMLVLDEADRCLDMGFQKTLNSIIENFP-PVRQTLLFSATQTNTVQDLARLNLK-DP 274
Query: 240 LFI-----------NVDSEKDTSTA-----DGLEQGYVVCESDKRXXXXXXXXKRNQKKK 283
+++ + ++K +TA + L+Q YVV + + K + K+K
Sbjct: 275 VYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQK 334
Query: 284 VIVFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVA 341
+IVF++SC KY E+ + P+L L+G Q +R + +F ++ TDVA
Sbjct: 335 IIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVA 394
Query: 342 ARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAK 401
+RGLD PAV+W++Q D P+D YIHR L+ LTP+E ++ + A K
Sbjct: 395 SRGLDFPAVNWVVQLDCPEDVSQYIHR-AGRSARNKTRGECLLVLTPSEEEYM--ISALK 451
Query: 402 VPLNE----YEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKTVYQI 457
LN + K+ + + ++E + L A+ + SY+++ K ++ +
Sbjct: 452 EQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNV 511
Query: 458 DKLDLAKVAKSYGFPVPPKV 477
LDL A+S G V P+V
Sbjct: 512 FSLDLDAFAQSLGLAVTPRV 531
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 266 bits (680), Expect = 5e-71
Identities = 174/469 (37%), Positives = 258/469 (54%), Gaps = 22/469 (4%)
Query: 36 FSDLK--LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI 93
FS+LK LS+ ++A+ + GF T VQ TIP L + KDV+ A TGSGKTLAFL+P I
Sbjct: 16 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
Query: 94 EML---HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
E++ +S KP GVI I+PTREL+ QI VA + +++ G R EA
Sbjct: 76 EIIRRSNSYPPKPHQVMGVI-ISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGG-REVEA 133
Query: 151 DKLM---KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIK 207
D +G N+LI TPGRL D ++ + F+NL+ L++DEADR+L++GF+ ++ II
Sbjct: 134 DMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIIS 193
Query: 208 ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK 267
LP + R++ LFSATQT V DLA+ LR I+ +E + T+ GL Y+ CE+D+
Sbjct: 194 RLPKQ-RRTGLFSATQTQAVADLAKAGLRNAMEVIS-GAESKSKTSSGLYCEYLKCEADQ 251
Query: 268 RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYI----DLPVLELHGKQKQQKRTNT 323
+ N+ KK++VF +C V Y+ +L+ I + HGK Q+ R
Sbjct: 252 KSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTA 311
Query: 324 FFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSL 383
F A G+L+CTDVAARGLDIP +D+++Q+DPP DP +IHRV ++
Sbjct: 312 LASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRV-GRTARMERQGRAI 370
Query: 384 MFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYL 443
+FL P E ++ +++ +VPL E + N + IK L + + S++
Sbjct: 371 VFLMPKETDYVEFMRIRRVPLQERKCSENASDVIPIIRSLAIKDRAVLEK-GLQAFVSFV 429
Query: 444 QAYASHSLKTVYQIDKLDLAKVAKSYG---FPVPPKV-NITIGASGKTP 488
+AY H ++ L++ K+A YG FP +V IG G TP
Sbjct: 430 RAYKEHHCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTP 478
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 261 bits (668), Expect = 1e-69
Identities = 164/465 (35%), Positives = 257/465 (55%), Gaps = 23/465 (4%)
Query: 33 EGSFSDLK--LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
E FSDL+ LS ++A+ + F T VQ TIP L + KDV A TGSGKTLAF++
Sbjct: 13 ETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVV 72
Query: 91 PAIEMLH---SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRR 147
P +E+L S KP GVI I+PTREL+ QI+ VA+ + + +++ G
Sbjct: 73 PLVEILRRSTSFPPKPHQVMGVI-ISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREV 131
Query: 148 QEADKLMK--GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQI 205
+ K+++ G N+LI TPGRL D ++ + F+NL+ L++DEADR+LE+GF+ ++ I
Sbjct: 132 KADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYI 191
Query: 206 IKILPNEDRQSMLFSATQTTKVEDLARISLR-PGPLFINVDSEKDTS-------TADGLE 257
I LP + R++ LFSATQT VE+LA+ LR P + + S+ ++S T GL
Sbjct: 192 ISRLPKQ-RRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLH 250
Query: 258 QGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYI----DLPVLELHG 313
Y+ CE+DK+ +N KK+IVF +C SV Y+ +L+ I + ++ +HG
Sbjct: 251 LEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHG 310
Query: 314 KQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXX 373
KQ R F A G L+CTDVAARGLDIP +D+++Q+DPP DP + HR
Sbjct: 311 DMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHR-AGRT 369
Query: 374 XXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQ 433
+++FL P E ++ +++ +VPL E + + + +K + +
Sbjct: 370 ARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPIIRSAAMKDRAVMEK 429
Query: 434 IAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKVN 478
K + S+++AY H +++ L++ K+A YG P ++
Sbjct: 430 GLK-AFVSFVRAYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMS 473
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 255 bits (651), Expect = 1e-67
Identities = 194/588 (32%), Positives = 283/588 (47%), Gaps = 113/588 (19%)
Query: 12 SEQDHAETETVVKDTATTGE---VEGSFS----DLKLSDGTMKAIGKMGFTQMTAVQTRT 64
++Q ET+ KD + SFS D KLSD + +MGF T VQ +
Sbjct: 4 AQQSARETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKE---RMGFEAPTLVQAQA 60
Query: 65 IPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--HSLKFKPRNGTGVIVITPTRELALQI 122
IP +L+G+DVL A TG+GKT+A+L P I L HS K +GT +VI PTREL LQ+
Sbjct: 61 IPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQV 120
Query: 123 FGVARELME-FHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKN 181
+ +L+ FH G V+GG + +E +L KG++ILIATPGRLLDHL+NT F+ KN
Sbjct: 121 YETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKN 180
Query: 182 LKALVIDEADRILEIGFEDEMRQIIKIL---PNE------------DRQSMLFSATQTTK 226
L+ ++ DEAD ILE+G+ E+ QIIK+L NE +Q++L SAT K
Sbjct: 181 LRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDK 240
Query: 227 VEDLARISLRPGPLFINVDSEK---------------------------------DTSTA 253
V DLA++SL P+ I +D+ K D
Sbjct: 241 VNDLAKLSL-DDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIP 299
Query: 254 DGLEQGYVVCESDKRXXXXXXXXK----RNQKKKVIVFLSSCNSVKYYAELLNYIDLP-- 307
L Q Y+ R K R +KV+VF S+ ++V ++ LL+ P
Sbjct: 300 SQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPN 359
Query: 308 ----------------VLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVD 351
LHG +Q+ R + F F ++ +L+ TDVAARGLD P V
Sbjct: 360 SETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVR 419
Query: 352 WIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEY---- 407
IIQ+D P + +Y+HRV +L+FL P E+ +L+ LK L EY
Sbjct: 420 CIIQYDCPGEATEYVHRV-GRTARIGEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMK 478
Query: 408 ---EFPTNK----------------IANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYAS 448
+FP + ++Q LE L + + +AK+ + S+++ YA+
Sbjct: 479 VLDKFPIPGNMPRIKKVLSLESHPWVISLQRALESLTYAEPKMKSLAKNAFVSWVRGYAA 538
Query: 449 H--SLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGKTPATKKRR 494
H LK+++ + KL L VAKS+ P + +G S K++R
Sbjct: 539 HKGELKSIFVVKKLHLGHVAKSFALREQPSL---VGKSHHKETMKRKR 583
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 246 bits (628), Expect = 6e-65
Identities = 179/556 (32%), Positives = 274/556 (49%), Gaps = 87/556 (15%)
Query: 22 VVKDTATTGEVEGSFSDLKLSDGTMKAIGK-MGFTQMTAVQTRTIPPLLAGKDVLGAAKT 80
VVK +F +L L + I + + MT+VQ ++IP LL G+D L ++T
Sbjct: 218 VVKQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQT 277
Query: 81 GSGKTLAFLIPAIEMLHSLKFKPRNGTG--VIVITPTRELALQIFGVARELME-FHSQTF 137
GSGKTLA+ IP ++ L +++ K + G +V+ PTRELALQ F ++L++ F
Sbjct: 278 GSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVP 337
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG 197
G+++GG R+ E +L KG+NILI+TPGRL+DH+++TK F L+ LV DEADRIL++G
Sbjct: 338 GVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLG 397
Query: 198 FEDEMRQIIKILPNE--DRQSMLFSATQTTKVEDLARISLRPGPLFINV----------- 244
FE ++ I+ + E RQ++L SAT T V LA ISL P+ I+V
Sbjct: 398 FEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLH-DPVSISVLDKSHDQLNPK 456
Query: 245 -------------DSEKDTSTADGLEQGYVVCESDKR----XXXXXXXXKRNQKKKVIVF 287
D + + L+Q V S R K + +K++VF
Sbjct: 457 DKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVF 516
Query: 288 LSSCNSVKYYAELL------------------NYIDLPVLELHGKQKQQKRTNTFFEFCN 329
SSC V+++ L + L L LHG +Q++RT F EF +
Sbjct: 517 FSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSH 576
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPT 389
+ RG+L+CTDVAARGLD+P V WI+Q++ P P +YIHR+ SL+ L P+
Sbjct: 577 SRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRI-GRTARIGCHGSSLLILAPS 635
Query: 390 ELGFLRYLKAAKVPLNEYEFP------------------------------TNKIANVQA 419
E ++ L + K+ ++E + + +Q
Sbjct: 636 EAEYVNSLASHKINVSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQT 695
Query: 420 QLEKLIKSNYYLHQIAKDGYRSYLQAYASH--SLKTVYQIDKLDLAKVAKSYGFPVPPKV 477
E + S+ AK +S++QAYA++ LK ++ + L L VAKS+G P+
Sbjct: 696 VFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPR- 754
Query: 478 NITIGASGKTPATKKR 493
N++ K A KR
Sbjct: 755 NLSALTRKKRKAHVKR 770
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 241 bits (615), Expect = 2e-63
Identities = 164/464 (35%), Positives = 250/464 (53%), Gaps = 33/464 (7%)
Query: 41 LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLH--- 97
LSD ++ + GF QMT VQT IP LLA KDV A TGSGKTLAFL+P +E+L
Sbjct: 14 LSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRH 73
Query: 98 -SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF---GIVIGGANRRQEADKL 153
+ P+ G +VI+PTRELA QI V + +E +++GG + ++ L
Sbjct: 74 KETPWGPKE-IGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATL 132
Query: 154 MKGVN-ILIATPGRLLDHLQNTKGFI-----FKNLKALVIDEADRILEIGFEDEMRQIIK 207
+ IL+ TPGRL D Q + K+L+ LV+DEADR+L++GF+ + I+
Sbjct: 133 RRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILG 192
Query: 208 ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK 267
LP + R++ LFSATQTT+V DL R LR P+ ++V + +T L+ Y + E +
Sbjct: 193 YLPRQ-RRTGLFSATQTTEVTDLIRAGLR-NPVLVSVKEKASVNTPARLQNFYRIVEPEL 250
Query: 268 R--XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLP---VLELHGKQKQQKRTN 322
+ KV+VF +C V+Y+AE L + LP VL +HGK K KR N
Sbjct: 251 KFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPL-LPKRTVLGIHGKMK-NKRAN 308
Query: 323 TFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXS 382
+F N + +L+CTDV ARGLD+P ++W++Q+DPP ++HRV +
Sbjct: 309 VVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRV-GRTARQGNEGNA 367
Query: 383 LMFLTPTELGFLRYLKA-AKVPL--------NEYEFPTNKIANVQAQLEKLIKSNYYLHQ 433
L+FL P+E ++ +LK KV L + + K+ V QL +L ++ ++
Sbjct: 368 LVFLLPSEDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQAADKGVYD 427
Query: 434 IAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKV 477
+ S+++AY H + ++ LDL K+A +YG P++
Sbjct: 428 KGMRAFVSHVRAYTKHECSAILRLKDLDLGKMATAYGLLQLPRM 471
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 236 bits (603), Expect = 4e-62
Identities = 142/353 (40%), Positives = 204/353 (57%), Gaps = 13/353 (3%)
Query: 19 TETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAA 78
TE + KD + E SF++L +S A ++G+ + + +Q +P L GKDV+G A
Sbjct: 30 TEEIEKDDEEDVK-EKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLA 88
Query: 79 KTGSGKTLAFLIPAIEML--HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT 136
+TGSGKT AF IP ++ L H F +V+TPTRELA QI L
Sbjct: 89 ETGSGKTGAFAIPVLQSLLDHPQAFF------CLVLTPTRELAFQIGQQFEALGSGIGLI 142
Query: 137 FGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI 196
+++GG + +A L + +I++ATPGRL+DHL+NTKGF K LK L++DEADRIL +
Sbjct: 143 AAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNM 202
Query: 197 GFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGL 256
FE E+ +I+K++P E R++ LFSAT T KV L R SLR P ++V S T D L
Sbjct: 203 DFEVELDKILKVIPRE-RRTYLFSATMTKKVSKLERASLRD-PARVSVSSRY--KTVDNL 258
Query: 257 EQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQK 316
+Q Y+ + + + IVF ++C + A +L + + + LHG+
Sbjct: 259 KQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMS 318
Query: 317 QQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q+KR + +F + R ILVCTDVAARGLDIP VD +I +D P +DY+HRV
Sbjct: 319 QEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRV 371
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 231 bits (589), Expect = 2e-60
Identities = 154/440 (35%), Positives = 234/440 (53%), Gaps = 16/440 (3%)
Query: 2 AGNKRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQ 61
A +V+D + ++ + + A+ + SF D+ LS +KAI MGF Q T +Q
Sbjct: 186 ADTLKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQ 245
Query: 62 TRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNG--TGVIVITPTRELA 119
IP L GKD+ A TG+GKT AF +P +E L +KPR T V+V+ PTREL
Sbjct: 246 KACIPVGLLGKDICACAATGTGKTAAFALPVLERLI---YKPRQAPVTRVLVLVPTRELG 302
Query: 120 LQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIF 179
+Q+ V R+L +F + T + +GG + + + L +ILIATPGRL+DHL N F
Sbjct: 303 IQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHL 362
Query: 180 KNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLR-PG 238
+++ L++DEADR+L+ FE++M++II++ + RQ+MLFSAT T +V+DLA +SL+ P
Sbjct: 363 SSIEVLILDEADRMLDEYFEEQMKEIIRMC-SHHRQTMLFSATMTDEVKDLASVSLKNPV 421
Query: 239 PLFINVDSEKDTSTADGLEQGYVVCESDK---RXXXXXXXXKRNQKKKVIVFLSSCNSVK 295
+F+N +T A L Q ++ ++ R R V++F +
Sbjct: 422 RIFVN----SNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAH 477
Query: 296 YYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQ 355
LL + L V ELHG Q +R F + + ILV TDVAARGLDI V +I
Sbjct: 478 RMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVIN 537
Query: 356 FDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLR-YLKAAKVPLNEYEFPTNKI 414
F P+ + Y+HRV S+ + E L+ +KAAK P+ P + I
Sbjct: 538 FTMPNTIKHYVHRV-GRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVI 596
Query: 415 ANVQAQLEKLIKSNYYLHQI 434
+ ++EK+ K Y + Q+
Sbjct: 597 LKFRDKIEKMEKDVYAVLQL 616
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 230 bits (586), Expect = 4e-60
Identities = 136/372 (36%), Positives = 222/372 (59%), Gaps = 18/372 (4%)
Query: 9 DAESEQDHAETETVVKDTA---TTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTI 65
D E + + A+ + +T ++ +F+ L LS +K + +G+ + + +Q+ TI
Sbjct: 203 DEEDDSEEAKADFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATI 262
Query: 66 PPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN--GTGVIVITPTRELALQIF 123
P L GKD++ A TGSGKT AF+IP IE L +KP T VIV+ PTRELA+Q+
Sbjct: 263 PIALLGKDIIAGAVTGSGKTAAFMIPIIERL---LYKPAKIASTRVIVLLPTRELAIQVA 319
Query: 124 GVARELMEFHSQ-TFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNL 182
V +++ F S TFG+ +GG N RQ+ L +I+IATPGR +DH++N+ F ++
Sbjct: 320 DVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSV 379
Query: 183 KALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFI 242
+ LV+DEADR+LE GF+DE+ +I+ +LP+ +RQ++LFSAT +K++ L +SL+ P+ I
Sbjct: 380 EILVMDEADRMLEEGFQDELNEIMGLLPS-NRQNLLFSATMNSKIKSLVSLSLKK-PVRI 437
Query: 243 NVDSEKDTSTADGLEQGYV-VCESDKRXXXXXXXXKR----NQKKKVIVFLSSCNSVKYY 297
+D K +T L Q +V + + D R +K+++VF++ +
Sbjct: 438 MIDPPKKAATK--LTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRL 495
Query: 298 AELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFD 357
++ + + V ELHG Q++R ++ +F N E +L+CTD+A+RGLDIP ++ +I +D
Sbjct: 496 RIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYD 555
Query: 358 PPDDPRDYIHRV 369
P Y+HRV
Sbjct: 556 MPKSYEIYLHRV 567
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 228 bits (581), Expect = 2e-59
Identities = 135/335 (40%), Positives = 199/335 (59%), Gaps = 8/335 (2%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F DL ++D +A ++G+T+ T +Q IP L G+D++G A+TGSGKT AF +P
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP--- 81
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
+L++L P+ +V+TPTRELA QI L +++GG + ++ L
Sbjct: 82 ILNALLETPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 140
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214
K +I+IATPGRL+DHL+NTKGF + LK LV+DEADRIL + FE E+ +I+K++P DR
Sbjct: 141 KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP-RDR 199
Query: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXX 274
++ LFSAT T KV+ L R +L+ P+ V S+ T + L+Q Y+ S +
Sbjct: 200 KTFLFSATMTKKVQKLQRAALK-NPVKCAVSSK--YQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 275 XXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 334
++F S+CN+ + A LL + + LHG+ Q KR + +F R I
Sbjct: 257 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSI 316
Query: 335 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
L+ TDVA+RGLDIP VD ++ FD P +DYIHRV
Sbjct: 317 LLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRV 351
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 227 bits (579), Expect = 3e-59
Identities = 146/438 (33%), Positives = 233/438 (52%), Gaps = 22/438 (5%)
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVIT 113
+ T VQ + LL DV+ + TGSGKTLAF++P + M+ + K +P + G ++++
Sbjct: 29 YKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPAD-IGALILS 87
Query: 114 PTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK-----GVNILIATPGRLL 168
P+REL QI V + E + T V GG Q+ DK +K VNIL+ATPGRL
Sbjct: 88 PSRELCSQIVSVIQPFAEKLNLTVETVTGG----QKVDKNIKMFKNKNVNILVATPGRLF 143
Query: 169 DHLQNTKGFI---FKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTT 225
+Q+ K I + L+ LVIDEADR EI FED MR+I+ +P + R++ LFSATQ
Sbjct: 144 QIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQ-RRTGLFSATQVK 202
Query: 226 KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVI 285
+ +DL LR + V E++++ L+ YV C +D++ ++ KK++
Sbjct: 203 EEDDLMVFGLRNAKQ-VKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKIL 261
Query: 286 VFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAAR 343
+F SCNSV+Y+ ++ P+ +HGK R + F ++ G+++ TDV AR
Sbjct: 262 IFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMAR 321
Query: 344 GLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYL-KAAKV 402
G+DI +DW+IQFD P ++HR +L+ + +L ++ +L KV
Sbjct: 322 GIDISDIDWVIQFDLPKHSSWFVHR-AGRTARCGREGNALILIASEQLAYVNFLDNHEKV 380
Query: 403 PLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYR---SYLQAYASHSLKTVYQIDK 459
L+E + PTN + +K+IK I + G R S++++YA H + +D
Sbjct: 381 KLDEIKVPTNNSRKSEELRQKMIKIQVSDRAILEAGTRAFVSHVESYAKHDCHLICSLDD 440
Query: 460 LDLAKVAKSYGFPVPPKV 477
L++ +A SY PK+
Sbjct: 441 LNVVGLANSYALLRLPKM 458
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 227 bits (579), Expect = 3e-59
Identities = 164/500 (32%), Positives = 252/500 (49%), Gaps = 31/500 (6%)
Query: 5 KRVRDAESEQDH------AETETVVKDTATTGEVEGS---FSDLKLSDGTMKAIGKMGFT 55
KR R+ +S+ D A T +V A T + S F LS T+K I GF
Sbjct: 42 KRGREGKSDVDEPLIKKPASTTPLVTQIAKTSDSYLSKTRFDQFPLSPLTLKGIEDAGFK 101
Query: 56 QMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG------V 109
MT VQ T+P +L GKD+L AKTG+GKT+AFL+P+IE + +K P + V
Sbjct: 102 TMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAV--IKAPPASRDNRHPPIIV 159
Query: 110 IVITPTRELALQIFGVARELMEFH-SQTFGIVIGGANRRQEADKLMKG-VNILIATPGRL 167
+V+ PTRELA Q A L+++H S +VIGG E +L K IL+ATPGRL
Sbjct: 160 LVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRL 219
Query: 168 LDHLQNTKGFIFK--NLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTT 225
DH+ NT GF + +K LV+DEAD +L++GF E+ +II +P + RQ+ LFSAT +
Sbjct: 220 KDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQ-RQTFLFSATVSD 278
Query: 226 KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKR----NQK 281
+V + ++L+ F+N E T + Q Y++ D+ K+ N
Sbjct: 279 EVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVG 338
Query: 282 KKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVA 341
KVI+F ++ + A+LL + L V E+H ++ Q RT EF ++ ILV +DV+
Sbjct: 339 YKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVS 398
Query: 342 ARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAK 401
ARG+D P V ++Q P D YIHR+ ++ L P E FL +K
Sbjct: 399 ARGVDYPDVSLVVQMGLPSDREQYIHRL-GRTGRKGKEGEGVLLLAPWEEYFLSSVK--D 455
Query: 402 VPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKTVYQIDKLD 461
+P+ + P V+ + LI+ + A + Y ++ + T ++ +
Sbjct: 456 LPITKSSLPPIDHEAVKKVQKGLIQVEMTNKEAAYQAWLGYYKSQKKIARDTTRLVELAN 515
Query: 462 LAKVAKSYGFPVPPKVNITI 481
+ ++S G +PP + + I
Sbjct: 516 --EFSRSMGLSIPPAIPVNI 533
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 222 bits (565), Expect = 1e-57
Identities = 148/410 (36%), Positives = 216/410 (52%), Gaps = 20/410 (4%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTR 63
NK++ + S + + + E +F +L + D +A K+GF T +Q
Sbjct: 18 NKKIETSNSSSEKSSENN--NGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQE 75
Query: 64 TIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIF 123
IP +L +DV+G A+TGSGKT AF +P I+ L + + +V+ PTRELA QI
Sbjct: 76 AIPVVLNKRDVIGLAQTGSGKTAAFALPVIQEL----WNNPSPFFAVVLAPTRELAYQI- 130
Query: 124 GVARELMEFHSQTFGI----VIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIF 179
E E + G+ ++GG + +A L K ++L+ TPGRL+DHL+NTKGF
Sbjct: 131 ---SEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSL 187
Query: 180 KNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGP 239
KNLK L++DEADR+L++ F + +I+KI+P+E R+++LFSAT T+KVE L R SL P
Sbjct: 188 KNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE-RRTLLFSATMTSKVEKLQRASLHQ-P 245
Query: 240 LFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAE 299
+ + V S+ ST D L Q Y+ + +I+F + N + A
Sbjct: 246 VRVAVSSK--FSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAI 303
Query: 300 LLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPP 359
LL + + LHG+ Q R +F + R LV TDVAARGLDIP VD +I +D P
Sbjct: 304 LLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIP 363
Query: 360 DDPRDYIHRVXXXXXXXXXXXXSLMFLTPTEL-GFLRYLKAAKVPLNEYE 408
D + YIHRV S+ +T +L FLR + EYE
Sbjct: 364 TDSKAYIHRV-GRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQEYE 412
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 220 bits (561), Expect = 3e-57
Identities = 129/351 (36%), Positives = 203/351 (57%), Gaps = 12/351 (3%)
Query: 24 KDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSG 83
K+ + SF + LS +K + +GF T +Q +TIP L GKD++GAA TGSG
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 84 KTLAFLIPAIEMLHSLKFKPRN--GTGVIVITPTRELALQIFGVARELMEFHSQTFGIVI 141
KT AF++P +E L ++P+ T V+++ PTRELA+Q VA ++ F + I
Sbjct: 309 KTAAFIVPILERL---LYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCI 365
Query: 142 GGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDE 201
GG + + + +L K +I+IATPGR +DH++N++GF +N++ +V+DEADR+LE GF DE
Sbjct: 366 GGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADE 425
Query: 202 MRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV 261
+ +II+ P + RQ+MLFSAT T KV+DL R+SL P+ + VD++K +TA L Q +V
Sbjct: 426 LNEIIQACP-KSRQTMLFSATMTDKVDDLIRLSLN-RPVRVFVDNKK--TTAKLLTQEFV 481
Query: 262 VCESDK---RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQ 318
+ R K ++ I+F S + + L E+HG Q+
Sbjct: 482 RVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQE 541
Query: 319 KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+R +F + + L+ TDVA+RG+DI ++ +I ++ P Y+HRV
Sbjct: 542 QRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRV 592
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 220 bits (561), Expect = 3e-57
Identities = 162/491 (32%), Positives = 249/491 (49%), Gaps = 31/491 (6%)
Query: 5 KRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRT 64
K+ A++ Q T VK T+ + + F LS ++KAI GF MT VQ T
Sbjct: 331 KKAASAKAVQTDKPTGEHVK-TSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEAT 389
Query: 65 IPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG------VIVITPTREL 118
+P +L GKDVL AKTG+GKT+AFL+PAIE + +K P + V+V+ PTREL
Sbjct: 390 LPIILQGKDVLAKAKTGTGKTVAFLLPAIEAV--IKSPPASRDSRQPPIIVLVVCPTREL 447
Query: 119 ALQIFGVARELMEFH-SQTFGIVIGGANRRQEADKLMKG-VNILIATPGRLLDHLQNTKG 176
A Q A L+++H S +VIGG E ++ IL+ATPGRL DH++NT G
Sbjct: 448 ASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSG 507
Query: 177 FIFK--NLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARIS 234
F + +K LV+DEAD +L++GF ++ +II +P + RQ+ LFSAT +V + ++
Sbjct: 508 FATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQ-RQTFLFSATVPEEVRQICHVA 566
Query: 235 LRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKR----NQKKKVIVFLSS 290
L+ FIN E T + Q Y++ D+ K N KVI+F ++
Sbjct: 567 LKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTT 626
Query: 291 CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAV 350
+ A+LL+ + L V E+H ++ Q RT EF ++ ILV +DV+ARG+D P V
Sbjct: 627 AMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDV 686
Query: 351 DWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFP 410
++Q P D YIHR+ ++ L P E F+ +K +P+ + P
Sbjct: 687 SLVVQMGLPSDREQYIHRL-GRTGRKGKEGEGVLLLAPWEEYFMSSVK--DLPITKSPLP 743
Query: 411 ---TNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKTVYQIDKLDLA-KVA 466
+ VQ L ++ N + Y+++L Y S + ++LA + +
Sbjct: 744 PIDPEAVKRVQKGLSQVEMKN------KEAAYQAWLGYYKSQKMIARDTTRLVELANEFS 797
Query: 467 KSYGFPVPPKV 477
+S G PP +
Sbjct: 798 RSMGLDSPPAI 808
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 219 bits (558), Expect = 7e-57
Identities = 138/373 (36%), Positives = 207/373 (54%), Gaps = 19/373 (5%)
Query: 9 DAESEQDH-AETETVVKDTA---------TTGEVEG--SFSDLKLSDGTMKAIGKMGFTQ 56
+++SE+D AE + V+K + T E E SFS+L L ++A + +++
Sbjct: 86 ESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSK 145
Query: 57 MTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTR 116
T +Q++ IPP L G D++G A+TGSGKT AF IP + L + + ++ PTR
Sbjct: 146 PTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL----WHDQEPYYACILAPTR 201
Query: 117 ELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKG 176
ELA QI L ++GG N +A LM+ +I+IATPGRL+DHL+NTKG
Sbjct: 202 ELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG 261
Query: 177 FIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLR 236
F + LK LV+DEADR+L++ F + +I+KI+P ++R + LFSAT T+K++ L R SL
Sbjct: 262 FSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASL- 320
Query: 237 PGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKY 296
P+ V ++ T D L Q +V + K +I+F + + +
Sbjct: 321 TNPVKCAVSNK--YQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAER 378
Query: 297 YAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQF 356
+ L N ++ LHG Q +R + F +R ILV TDVAARGLDIP+VD ++ +
Sbjct: 379 LSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNY 438
Query: 357 DPPDDPRDYIHRV 369
D P D + YIHRV
Sbjct: 439 DIPVDSKSYIHRV 451
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 219 bits (558), Expect = 7e-57
Identities = 139/361 (38%), Positives = 199/361 (54%), Gaps = 20/361 (5%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
D SE D AE + + ++ DL L++ +A ++ + + +Q IP
Sbjct: 48 DKGSEDDAAEEQKL------------TWKDLGLNEALCQACDELKWKAPSKIQREAIPVA 95
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARE 128
L GKDV+G A+TGSGKT AF +P +LH+L P+ +V+TPTRELA QI
Sbjct: 96 LQGKDVIGLAETGSGKTGAFALP---ILHALLENPQRYFA-LVLTPTRELAFQIGEQFEA 151
Query: 129 LMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVID 188
L +V+GG + + +L K +I+IATPGRL+DHL+N KGF K +K LV+D
Sbjct: 152 LGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMD 211
Query: 189 EADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEK 248
EADRIL + FE E+ +I+K+LP E R++ LFSAT T KV+ L R SL+ + V+
Sbjct: 212 EADRILNMDFEVELDKILKVLPRE-RRTFLFSATMTKKVKKLQRASLKDP---VKVEVSN 267
Query: 249 DTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPV 308
T + L+Q Y+ + ++F S+CN+ A +L + L
Sbjct: 268 KYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAA 327
Query: 309 LELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
+ LHG+ Q KR +F R IL+ TDVA+RGLDIP VD ++ FD P +DYIHR
Sbjct: 328 IPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHR 387
Query: 369 V 369
V
Sbjct: 388 V 388
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 218 bits (556), Expect = 1e-56
Identities = 125/336 (37%), Positives = 193/336 (57%), Gaps = 9/336 (2%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F DLK+ K + + GF M VQ + IP L G D++G+++TG+GKTLAFL+P ++
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L SL + +G G +VITPTRELALQIF V + ++ + G+++GG E K+ +
Sbjct: 66 LVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKVNQ 125
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
+NIL+ TPGRLL HLQ N++ L++DEAD+++E+GF++ + I++ +P + +Q
Sbjct: 126 -MNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIP-QKKQ 183
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXX 275
++LFSAT ARI P I++ K+ L Q + + + +
Sbjct: 184 TLLFSATPKAST---ARILKLEDPRIISI--YKEEGFPSQLRQYFYMMRTGDKINYLHTF 238
Query: 276 XKRNQKKKVIVFLSSCNSVKYYAELLNYIDL--PVLELHGKQKQQKRTNTFFEFCNAERG 333
N + K IVF S+C VK++ L + L + L G Q++R + F F + G
Sbjct: 239 IGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKNG 298
Query: 334 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
IL CTD+ +RGLD P VD +IQ+D P + Y+HRV
Sbjct: 299 ILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRV 334
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 216 bits (550), Expect = 6e-56
Identities = 160/572 (27%), Positives = 277/572 (47%), Gaps = 104/572 (18%)
Query: 23 VKDTATTGEVEGSFSDLKLSDGTMKAIGKM-GFTQMTAVQTRTIPPLLAGKDVLGAAKTG 81
VK+T TG S L L +K + + ++T+VQ +TIP +L GKDVL ++TG
Sbjct: 319 VKETIFTGS---KISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTG 375
Query: 82 SGKTLAFLIPAIEMLHSL--KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF-G 138
SGKTLA+ +P +E+L + + ++G +VI PTREL +Q + + ++L++ ++ G
Sbjct: 376 SGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPG 435
Query: 139 IVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGF 198
++GG +R+ E +L KG+NILI TPGRL+DHL +T F L+ L++DEADR+LE+G+
Sbjct: 436 SLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGY 495
Query: 199 EDEMRQIIKILPN-----EDR-----QSMLFSATQTTKVEDLARISLRPGPLFINVDSE- 247
E +++Q+++ + ED+ Q ML SAT T++V+ LA ++L+ PL+I+ E
Sbjct: 496 ERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLK-NPLYIDNSDEA 554
Query: 248 ------------KDT----------------------STADGLEQGYVVCESDKRXXXXX 273
K+T S + L+ YVV R
Sbjct: 555 ASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALS 614
Query: 274 XXXKRN-----QKKKVIVFLSSCNSVKYYAELLNYI---------------------DLP 307
+ ++ K IVF+S+ V ++ ++LN D+P
Sbjct: 615 SLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIP 674
Query: 308 VLE------LHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDD 361
+L+ LHG Q +R F F + +L+ TDV RG+D+P + ++Q+ PP
Sbjct: 675 LLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQT 734
Query: 362 PRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPL----------------N 405
D++HRV +++FLTP+E F+R+L+ ++ + +
Sbjct: 735 TADFVHRV-GRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDD 793
Query: 406 EYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYAS--HSLKTVYQIDKLDLA 463
E +N+Q + + L++ + LH + + S+++ Y++ LK ++ + +
Sbjct: 794 EARTVQEAASNLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMG 853
Query: 464 KVAKSYGFPVPPKVNITIGASGKTPATKKRRT 495
AKS+ P A+ K R T
Sbjct: 854 HFAKSFALKEAPSKFAAKHAAPKAAPPTNRLT 885
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 215 bits (548), Expect = 1e-55
Identities = 133/369 (36%), Positives = 202/369 (54%), Gaps = 10/369 (2%)
Query: 5 KRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRT 64
K+ E E+D E + DT E SF + LS M+AIG +G+ T +Q T
Sbjct: 129 KKKAGEEDEEDEGE-KMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQAST 187
Query: 65 IPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFG 124
IP L G+D+ G A TG+GKT A+++P +E L + T V+V+ PTREL Q++
Sbjct: 188 IPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQ 247
Query: 125 VARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKA 184
V ++L +F + G+ IGG + + + L + +I+IATPGRL+DH++NT F +++
Sbjct: 248 VTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEV 307
Query: 185 LVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISL-RPGPLFIN 243
L++DEADR+L+ F ++M++II + RQ+MLFSAT + +V+DLA +SL +P +F+N
Sbjct: 308 LILDEADRMLDEYFAEQMKEIINSC-CKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVN 366
Query: 244 VDSEKDTSTADGLEQGYVVCESDK---RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAEL 300
+ A L Q ++ DK R R +VF+ + L
Sbjct: 367 ----NNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHIL 422
Query: 301 LNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPD 360
L + + ELHG QQ+R + +F + +L+ TDVAARGLDI V +I F P
Sbjct: 423 LGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPI 482
Query: 361 DPRDYIHRV 369
YIHRV
Sbjct: 483 TTEHYIHRV 491
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 215 bits (547), Expect = 1e-55
Identities = 159/467 (34%), Positives = 244/467 (52%), Gaps = 27/467 (5%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F LS ++KAI G+ MT VQ T+P +L GKDVL AKTG+GKT+AFL+P+IE+
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 96 LHSLKFKPRNGTG------VIVITPTRELALQIFGVARELMEFH-SQTFGIVIGGANRRQ 148
+ +K P + +VI PTRELA Q A L+++H S +VIGG
Sbjct: 116 V--VKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGL 173
Query: 149 EADKLMKG-VNILIATPGRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQI 205
E ++ IL+ATPGRL DH++NT GF K +K LV+DEAD +L++GF ++ +I
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233
Query: 206 IKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES 265
I +P E RQ+ LFSAT +V + ++LR F+N E T + Q +++
Sbjct: 234 ISAVPKE-RQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASL 292
Query: 266 DKRXXXXXXXXKR----NQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRT 321
D+ + N KVIVF ++ K A+LL ++L V E+H ++ Q RT
Sbjct: 293 DRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRT 352
Query: 322 NTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXX 381
EF ++ ILV +DV+ARG+D P V ++Q P D YIHR+
Sbjct: 353 RVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRL-GRTGRKGKEGE 411
Query: 382 SLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKD-GYR 440
++ L P E FL LK +P+ + P+ V +K+ K+ ++ K+ Y+
Sbjct: 412 GILLLAPWEEYFLSSLK--DLPITKSPLPSIDPETV----KKVQKALCHVEMRNKEAAYQ 465
Query: 441 SYLQAYASHSLKTVYQIDKLDLA-KVAKSYGFPVPPKV-NITIGASG 485
++L Y S + + ++LA + ++S G PP + + +G G
Sbjct: 466 AWLGYYNSQKMIGRDKDRLVELANEFSRSMGLDNPPAIPKLILGKMG 512
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 211 bits (538), Expect = 2e-54
Identities = 144/464 (31%), Positives = 236/464 (50%), Gaps = 26/464 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SF + + A+ GF +MT VQ IP L KD++ A TGSGKTLA+L+P +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF--------GIVIGGAN- 145
+ + + G G +++ PTRELA QIF V +EL+ + + + IGG
Sbjct: 62 KV-TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 146 -RRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQ 204
A K +++I TPGRL + L + K+L+ L++DEAD ++++GF+ ++
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQS 177
Query: 205 IIKILPNEDRQSMLFSATQTTKVEDLARIS-LRPG-PLFINVDSEK-DTSTADGLEQGYV 261
II LP + R++ LFSAT V +I+ LR + + V S+K DT T L +
Sbjct: 178 IISQLPKQ-RRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSL 236
Query: 262 VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLP--VLELHGKQKQQK 319
V + + +K IVF SSC SV+Y+ L LP ++ LHG+Q Q
Sbjct: 237 VIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSN 296
Query: 320 RTNTFFEFCNA-ERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXX 378
R+ F +F + ++ +L TD+A+RGLDIP VD+++Q DPP DP+ + HR
Sbjct: 297 RSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRA 356
Query: 379 XXXSLMFLTPTELGFLRYLKAAKVPLNEYEFP-----TNKIANVQAQLEKLIKSNYYLHQ 433
++ E + L+ KVP+ + P +++ + +L K++ + L+
Sbjct: 357 GVAIVLLNDGREEEYEELLRVRKVPITRIDTPIEALDLSRLKVLTHELRKIVSKDRDLYD 416
Query: 434 IAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFPVPPKV 477
+ S+++AY H +++I LDL ++A +Y PK+
Sbjct: 417 KGLRAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYALLHLPKM 460
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 211 bits (536), Expect = 3e-54
Identities = 129/347 (37%), Positives = 195/347 (56%), Gaps = 14/347 (4%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
EV +F++L + + +KA ++G+ + +Q +P L GKDV+G A+TGSGKT AF I
Sbjct: 6 EVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAI 65
Query: 91 PAIEMLHSLKF--KPRNGTG------VIVITPTRELALQIFGVARELMEFHSQTFGIVIG 142
P ++ L + +P+ G V++PTRELA+QI L S +++G
Sbjct: 66 PILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVG 125
Query: 143 GANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEM 202
G +R Q+ L K ++ ATPGRL DH+ +TKGF K+LK LV+DEADR+L FE +
Sbjct: 126 GIDRMQQTIALGKRPHV--ATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSL 183
Query: 203 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVV 262
QI++ +P E R++ LFSAT T KV L R LR + +++ ST D L+Q Y
Sbjct: 184 NQILEEIPLE-RKTFLFSATMTKKVRKLQRACLRNP---VKIEAASKYSTVDTLKQQYRF 239
Query: 263 CESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTN 322
+ + + ++F +C+ ++ A +L + + + G+ Q KR
Sbjct: 240 VAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLG 299
Query: 323 TFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+F E ILVCTDVA+RGLDIP+VD +I +D P + +DYIHRV
Sbjct: 300 ALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRV 346
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 207 bits (528), Expect = 2e-53
Identities = 164/526 (31%), Positives = 257/526 (48%), Gaps = 97/526 (18%)
Query: 51 KMGFTQMTAVQTRTIPPLLA--GKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN--- 105
KM + TA+Q+ +P LL KD A+TGSGKTLA+L+P ++ L L P+N
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRL---PKNLHT 212
Query: 106 ---GTGVIVITPTRELALQIFGVARELME---FHSQTFGIVIGGANRRQEADKLMKGVNI 159
G +++ PTREL QI+ VA +L H VIGG ++ E ++ KGVNI
Sbjct: 213 RTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNI 272
Query: 160 LIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED------ 213
LI TPGRL DHL+NT+ ++ +V+DE DR++++GFE+ + +I+ L ++
Sbjct: 273 LIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKD 332
Query: 214 ------RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTS-----TADGLEQGYVV 262
+ +ML SAT V+ L+ +L+ L++ ++T+ + L Q YVV
Sbjct: 333 LSIPSRKVTMLCSATMKDTVKRLSDSALKDA-LYLKSSIVEETNDGYSQAPEQLLQRYVV 391
Query: 263 CESDKRXXXXXXXXKRNQK--KKVIVFLSSCNSVKYYAE----LLNYIDLP--------- 307
R + + + KK+I+FLS +SV ++ E +N ++
Sbjct: 392 VPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDS 451
Query: 308 ------------------VLELHGKQKQQKRTNTFFEFCNAERG---ILVCTDVAARGLD 346
V LHG QQ RT+T F ++E IL+CTDVAARGLD
Sbjct: 452 EGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLD 511
Query: 347 IPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNE 406
+P VD ++Q+D P DY+HR+ ++MFL P E ++ LK++ V N
Sbjct: 512 LPNVDLVVQYDAPFSTDDYLHRI-GRTARAGHNGAAIMFLLPKESEYINLLKSS-VSANI 569
Query: 407 YEFPT---------------------NKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQA 445
E P ++ Q +LE+ I N + IAK + SY++A
Sbjct: 570 LEQPNGPSGLLSAGFSQGKTNTNDWQDRATEWQLELERFILENEPMRNIAKRAFTSYVRA 629
Query: 446 YASH--SLKTVYQIDKLDLAKVAKSYGF-PVPPKVNITIGASGKTP 488
YA+H S ++++ + L L +AKS+ P K++ GA+ P
Sbjct: 630 YATHLSSERSIFNMRDLHLGHIAKSFALREAPGKIS---GANSSKP 672
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 204 bits (520), Expect = 2e-52
Identities = 137/381 (35%), Positives = 202/381 (52%), Gaps = 30/381 (7%)
Query: 47 KAIGKMGFTQMTAVQTRTIPPLLAGKD--VLGAAKTGSGKTLAFLIPAIEMLHSLKFKPR 104
KAI +M F +T VQ +TI P+L+ +D V+ AKTG+GKT AFLIP + L + KF +
Sbjct: 119 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 178
Query: 105 NGTGVIVITPTRELALQIFGVARELMEFHSQTFGI-------VIGGANRRQEADKLMK-G 156
+++ PTR+LALQI E+ + H +G+ ++GG + R +K+ K
Sbjct: 179 YMVKAVIVAPTRDLALQI---EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 235
Query: 157 VNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQS 216
NI+IATPGRL+D L+ F+ + V+DEADR+LEIGF D++ I IL ++ +S
Sbjct: 236 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 295
Query: 217 ------MLFSATQTTKVEDLAR-ISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRX 269
+LFSAT KV+ LA I + LF++ + + + ++Q V+ E
Sbjct: 296 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 355
Query: 270 XXXXXXXKRNQKK------KVIVFLSSCNSVKYYAELLNYI---DLPVLELHGKQKQQKR 320
+ Q K K I+F + + +L DLP+LE HGK Q KR
Sbjct: 356 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 415
Query: 321 TNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXX 380
T+ F E GILVCTDV ARG+D P V ++Q P + +YIHR+
Sbjct: 416 TSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI-GRTARSGKEG 474
Query: 381 XSLMFLTPTELGFLRYLKAAK 401
S++F+ EL F+R L+ AK
Sbjct: 475 SSVLFICKDELPFVRELEDAK 495
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 204 bits (520), Expect = 2e-52
Identities = 123/372 (33%), Positives = 208/372 (55%), Gaps = 14/372 (3%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVEGS-FSDLKLSDGTMKAIGKMGFTQMTAVQT 62
N + + +S+Q+ + E ++ + F L L++ ++ ++G + T VQT
Sbjct: 27 NIQSQKLDSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQT 86
Query: 63 RTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQI 122
+P +LAG+DVLG A+TGSGKT AF +P +LH L P G +V+TPTRELA Q+
Sbjct: 87 HCVPKILAGRDVLGLAQTGSGKTAAFALP---ILHRLAEDPY-GVFALVVTPTRELAFQL 142
Query: 123 FGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGF--IFK 180
+ L + +++GG + + L+ +I+I TPGR+ L+N +F
Sbjct: 143 AEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFS 202
Query: 181 NLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPL 240
K LV+DEADR+L++GF+DE+R I + LP + RQ++LFSAT T+ ++ L S
Sbjct: 203 RTKFLVLDEADRVLDVGFQDELRTIFQCLP-KSRQTLLFSATMTSNLQALLEHSSNKAYF 261
Query: 241 FINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKV---IVFLSSCNSVKYY 297
+ ++ + T D L Q ++ + D + + + K + ++F+S+C + +
Sbjct: 262 Y---EAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRL 318
Query: 298 AELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFD 357
+ +L+ +++ + +H Q R + +F + + IL+ TDVA+RGLDIP VD +I +D
Sbjct: 319 SLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYD 378
Query: 358 PPDDPRDYIHRV 369
P DPRDY+HRV
Sbjct: 379 IPRDPRDYVHRV 390
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 202 bits (513), Expect = 1e-51
Identities = 139/434 (32%), Positives = 233/434 (53%), Gaps = 23/434 (5%)
Query: 38 DLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLH 97
D+ ++ K I + GF +MT VQ + IP +L GKDV+ + TG+GKT+AFL P + ++
Sbjct: 8 DVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIY 67
Query: 98 SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGV 157
K + R G +VITPTRELALQI VA L + + F IGG + ++ ++ +
Sbjct: 68 DGKGRGRPGVTAVVITPTRELALQIREVA-GLFDVKCECF---IGGMSIEEDYKRMKEEF 123
Query: 158 NILIATPGRLLDHL-QNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQS 216
+I + TPGRLL+ + + TK F +L LV+DEAD++L GFE+++ Q++ LP +R +
Sbjct: 124 SIAVGTPGRLLEIVGKETKK--FSSLSHLVLDEADKLLGFGFEEKLMQLLAKLP-RNRVT 180
Query: 217 MLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXX 276
LFSAT+ V+ L+R+ LR P+ INV + + + + VV +K
Sbjct: 181 GLFSATRNDSVDKLSRVFLR-NPVSINVGNNEMPVALEYI----VVSPMEKLLVLMDIVT 235
Query: 277 KRNQKKKVIVFLSSCNSVKYYAELLNYIDL-PVLELHGKQKQQKRTNTFFEFCNAERGIL 335
R + IVF ++C+ V +++ L++ + ++HGK Q +R + EF + G+L
Sbjct: 236 GR----RCIVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQRD-GLL 290
Query: 336 VCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLR 395
CTDVAARG+D VD ++ FD P + +HR S++F+ P E ++
Sbjct: 291 FCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHR-SGRTARNGSKGESVLFVMPNERAYVE 349
Query: 396 YLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSLKTVY 455
+LK +P E + + Q ++ +I L ++ + SY+++Y H + +
Sbjct: 350 FLKLKGIPAVESSYRMKSSLSYQ-DIKSMISPE--LLGLSVKAFVSYIRSYKEHFVSYIL 406
Query: 456 QIDKLDLAKVAKSY 469
LD +A+ +
Sbjct: 407 DYKGLDFDSLAELF 420
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 194 bits (493), Expect = 3e-49
Identities = 127/395 (32%), Positives = 206/395 (52%), Gaps = 38/395 (9%)
Query: 5 KRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRT 64
K + +S+++ ++ + V SF + LS +KA G++ T +Q
Sbjct: 119 KSGKSKKSQENEDFFSALIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQAC 178
Query: 65 IPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNG--TGVIVITPTRELALQI 122
IP L GKD+ A TG+GKT AF++P +E + ++P+ T V+V+ PTRELA+Q+
Sbjct: 179 IPVALTGKDICACAATGTGKTAAFVLPILERMI---YRPKGASCTRVLVLVPTRELAIQV 235
Query: 123 FGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGF----- 177
F V R+L F + GG + + + L G ++++ATPGRL+DHL N+ F
Sbjct: 236 FQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNI 295
Query: 178 --IFK-----------------NLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSML 218
FK N + LV+DEADR+LE F D+M ++I++ ++RQ++L
Sbjct: 296 EVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCA-QNRQTLL 354
Query: 219 FSATQTTKVEDLARISL-RPGPLFINVDSEKDTSTADGLEQGYVVCESDK---RXXXXXX 274
FSAT T ++++LA +SL +P +FIN ++T TA L Q ++ + + R
Sbjct: 355 FSATMTEEIDELASMSLQKPVKIFIN----ENTDTALKLRQEFIRIRAGRETDREAMVAA 410
Query: 275 XXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 334
R + IVF+ + + LL + + V ++ Q +R + +F AE +
Sbjct: 411 LVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDV 470
Query: 335 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
LV TD+A+RGLDI V +I + P + YIHRV
Sbjct: 471 LVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRV 505
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 194 bits (492), Expect = 3e-49
Identities = 130/335 (38%), Positives = 184/335 (54%), Gaps = 44/335 (13%)
Query: 31 EVEGSFSDLK--LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAF 88
E FS+LK LS+ ++A+ + GF T VQ TIP L + KDV+ A TGSGKTLAF
Sbjct: 12 EAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAF 71
Query: 89 LIPAIEML---HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGAN 145
L+P IE++ +S KP GVI I+PTREL+ QI VAR + ++
Sbjct: 72 LLPFIEIIRRSNSYPPKPHQVMGVI-ISPTRELSAQIHKVARAVRLDFAKC--------- 121
Query: 146 RRQEADKLM---KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEM 202
R EAD +G N+LI TPGRL D ++ + F+NL+ L++DEADR+L++GF+ ++
Sbjct: 122 REVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQV 181
Query: 203 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVV 262
II LP + R++ LFSATQT V DLA+ GL Y+
Sbjct: 182 NYIISRLPKQ-RRTGLFSATQTQAVADLAKA---------------------GLRNPYLK 219
Query: 263 CESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYI----DLPVLELHGKQKQQ 318
CE+D++ N+ KK++VF +C V Y+ +++ I + HGK Q+
Sbjct: 220 CEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQK 279
Query: 319 KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWI 353
R F A G+L+CTDVAARGLDIP + +I
Sbjct: 280 GRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 190 bits (482), Expect = 5e-48
Identities = 122/343 (35%), Positives = 186/343 (53%), Gaps = 12/343 (3%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SFSDL +S + + + + T +Q I +L G++ +G AKTGSGKT AF +P IE
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
K +G +++TPTRELA+QI L + +++GG + +++ L
Sbjct: 68 KWS----KDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 155 KGVNILIATPGRLLDHLQ-NTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILP- 210
K ++++ATPGRL D ++ N + I + +K LV+DEADR+L F D++ +LP
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPA 183
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPG--PLFINVDSEKDTSTADGLEQGYVVCESDKR 268
+EDRQ++LF+AT T + L + PL++ + S L+Q Y+ S R
Sbjct: 184 SEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVR 243
Query: 269 XXXXXX--XXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFE 326
N KK I+F++ + + +L ++L V ELH + Q++R N+
Sbjct: 244 EAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGR 303
Query: 327 FCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F ILV TDVA+RGLDIP+V +I FD P DP DYIHRV
Sbjct: 304 FRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRV 346
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 189 bits (481), Expect = 6e-48
Identities = 142/453 (31%), Positives = 221/453 (48%), Gaps = 30/453 (6%)
Query: 52 MGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML-----HSLKFKPRNG 106
MGF MT VQ TIP L KDV+ + TGSGKT AF+IP +E + ++ KFK +
Sbjct: 25 MGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHF 84
Query: 107 TGVIVITPTRELALQIFGVARELME-FHSQTFGI---VIGGAN----RRQEADKLMKGVN 158
++I PTREL+ QI V +E + S F I ++ G N R ++ L
Sbjct: 85 HS-LIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQ 143
Query: 159 ILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSML 218
ILI TPGR+LD LQ +V+DEADR+L++ F + +I+++LP + R++ L
Sbjct: 144 ILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ-RRTGL 201
Query: 219 FSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKR 278
FSAT + D+ + LR P+ I V+S+ ++ L+ Y V ++
Sbjct: 202 FSATMRSAGSDIFKTGLR-NPVRITVNSKNQAPSS--LKLNYCVVNPAEKLQLLVSILNN 258
Query: 279 NQKKKVIVFLSSCNSVKYYAELLNYI--------DLPVLELHGKQKQQKRTNTFFEFCNA 330
+ KK IV+ +C SV Y+ + Y+ ++ + LHGK + RT T F ++
Sbjct: 259 YKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDS 318
Query: 331 -ERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPT 389
+L TDVAARG+DIP VD +IQ DPP + ++HR
Sbjct: 319 LSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGR 378
Query: 390 ELGFLRYLKAAKVPLNEYEFPTNKI-ANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYAS 448
E F+ +++ V L E + I N I + Y ++++ Y++
Sbjct: 379 EEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRDRFDKGVKAYVAFIKYYSN 438
Query: 449 HSLKTVYQIDKLDLAKVAKSYG-FPVPPKVNIT 480
HS +++++ LD +AK YG F +P IT
Sbjct: 439 HSATSIFRLQSLDYVGIAKLYGLFRLPRMPEIT 471
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 187 bits (475), Expect = 3e-47
Identities = 152/467 (32%), Positives = 232/467 (49%), Gaps = 47/467 (10%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F + +S T+KA+ G +MT VQ T+ L GKD L AKTG+GK++AFL+PAIE
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 96 LHSLKFKPRNGTGV--------IVITPTRELALQIFGVARELMEFHSQTFGI--VIGGAN 145
+ +G GV +++ PTRELA QI + L++FH G+ +IGG
Sbjct: 390 VLKAM---NSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDG-IGVQTLIGGTR 445
Query: 146 RRQEADKL-MKGVNILIATPGRLLDHLQNTKGFIFK--NLKALVIDEADRILEIGFEDEM 202
+ + +L + ILIATPGRLLDH++N G + LK ++DEAD +L++GF ++
Sbjct: 446 FKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDV 505
Query: 203 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVV 262
+II LP + RQS+LFSAT +V ++++ L+ +I+ T D + Q +V
Sbjct: 506 EKIIDCLPRQ-RQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIV 564
Query: 263 CESDKRXXXXXXXXKRNQKK----KVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQ 318
+ K + K+IVF S+ LL + L V E+H ++ Q
Sbjct: 565 APHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQL 624
Query: 319 KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXX 378
RT EF + R ILV +DV+ARG++ P V +IQ P D YIHR+
Sbjct: 625 HRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRL-GRTGREGK 683
Query: 379 XXXSLMFLTPTELGFLRYLKAAKVPLNEYEFP------TNKIANVQAQLEKLIKSNYYLH 432
L+ + P E FL LK +PL P +++ A+++ IK
Sbjct: 684 GGEGLLLIAPWERYFLDELK--DLPLEPIPAPDLDSIVKHQVDQSMAKIDTSIK------ 735
Query: 433 QIAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAK----SYGFPVPP 475
+ Y ++L Y +S++ + DK LA++A S G PP
Sbjct: 736 ---EAAYHAWLGYY--NSVRETGR-DKTTLAELANRFCHSIGLEKPP 776
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 187 bits (474), Expect = 4e-47
Identities = 123/342 (35%), Positives = 189/342 (54%), Gaps = 18/342 (5%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F D D ++AI K+GFT+ T +Q + P L G+D++G A+TGSGKTLA+L+PA
Sbjct: 140 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA--- 196
Query: 96 LHSLKFKPR----NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAD 151
L + +PR +G V+++ PTRELA+QI +R+ + GGA + +
Sbjct: 197 LVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 256
Query: 152 KLMKGVNILIATPGRLLDHL--QNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKIL 209
L +GV I+IATPGRL+D L Q+T K + LV+DEADR+L++GFE ++R+I+ +
Sbjct: 257 DLRRGVEIVIATPGRLIDMLECQHTN---LKRVTYLVLDEADRMLDMGFEPQIRKIVSQI 313
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLR-PGPLFI-NVDSEKDTSTADGLEQGYVVCESDK 267
DRQ++L+SAT +VE LAR LR P I + D + + S +E +V +K
Sbjct: 314 -RPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIE---IVPTPEK 369
Query: 268 RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEF 327
+ K+++F+ + L P L +HG + Q +R EF
Sbjct: 370 YNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEF 429
Query: 328 CNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ I+ TDVAARGLD+ + ++ +D P+ DYIHR+
Sbjct: 430 KSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRI 471
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 186 bits (471), Expect = 9e-47
Identities = 118/392 (30%), Positives = 204/392 (51%), Gaps = 11/392 (2%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F DL++ + +K + G T+ T VQ + IP +L G DV+ ++TGSGKTLAF++P +
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L + +V+ PTREL+ QI + + +++GGAN +A++L K
Sbjct: 63 L----LQKNRSFYCLVVAPTRELSSQI-AECFNMFQATGLRVCLLVGGANFNVQANQLSK 117
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
++++ TPGR+ +H+ TK F + ++ V+DEADR E F +++ II L E RQ
Sbjct: 118 RPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSL-REKRQ 176
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXX 275
++LF+AT + ++ L+ S+ P I + +T A L++ Y+ +
Sbjct: 177 TLLFTATMSDEISKLSS-SILKRPKTIRTAEKYETVPA--LKEYYLFVAMKWKNSALVEL 233
Query: 276 XKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL 335
+ +Q VIVF+S C + + + L + LHG+ Q+KR F + +L
Sbjct: 234 LEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVL 293
Query: 336 VCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLR 395
VCTD+ +RGLDI VD +I FD P +DYIHRV ++ +T ++ ++
Sbjct: 294 VCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRV-GRTARAGRSGTAITLVTQYDVEQIQ 352
Query: 396 YLK-AAKVPLNEYEFPTNKIANVQAQLEKLIK 426
++ + L E++ + A++E+ I+
Sbjct: 353 KIEFTLEKKLEEFKMMKKNFGTICARIEEAIQ 384
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 186 bits (471), Expect = 9e-47
Identities = 151/462 (32%), Positives = 231/462 (49%), Gaps = 37/462 (8%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F + +S T+KA+ G +MT VQ T+ L GKD L AKTG+GK++AFL+PAIE
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 96 LHSLKFKPRNGTGV--------IVITPTRELALQIFGVARELMEFHSQTFGI--VIGGAN 145
+ +G GV +++ PTRELA QI + L++ H G+ +IGG
Sbjct: 437 VLKAM---NSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDG-IGVQTLIGGTR 492
Query: 146 RRQEADKL-MKGVNILIATPGRLLDHLQNTKGFIFK--NLKALVIDEADRILEIGFEDEM 202
R + +L + ILIATPGRLLDH++N G + LK ++DEAD +L++GF+ ++
Sbjct: 493 FRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDV 552
Query: 203 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVV 262
+II LP + RQS+LFSAT +V ++++ L+ +I+ T D ++Q +V
Sbjct: 553 EKIIDCLPRQ-RQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIV 611
Query: 263 CESDKRXXXXXXXXKRNQKK----KVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQ 318
+ K + K+IVF S+ LL + L V E+H ++ Q
Sbjct: 612 APHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQL 671
Query: 319 KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXX 378
RT EF + R ILV +DV+ARG++ P V +IQ P D YIHR+
Sbjct: 672 HRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRL-GRTGREGK 730
Query: 379 XXXSLMFLTPTELGFLRYLKAAKV-PLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKD 437
L+ + P E FL LK + P+ + + V + K+ S I +
Sbjct: 731 GGKGLLLIAPWERYFLDELKDLPLEPIPAPDLDSRVKHQVDQSMAKIDTS------IKEA 784
Query: 438 GYRSYLQAYASHSLKTVYQIDKLDLAKVAK----SYGFPVPP 475
Y ++L Y +S++ + DK LA++A S G PP
Sbjct: 785 AYHAWLGYY--NSVRETGR-DKTTLAELANRFCHSIGLEKPP 823
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 186 bits (471), Expect = 9e-47
Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 17/366 (4%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F L L +K + K+G T +Q + IP +LAG+D +GAAKTGSGKT AF +P +E
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQI---FGVARELMEFHSQTFGIVIGGANRRQEADK 152
L +P + +V+TPT ELA QI F VA + M +V GG ++ E+ K
Sbjct: 69 LSE---EPVSHFA-LVLTPTHELAYQISEQFLVAGQAMGVR---VCVVSGGTDQMVESQK 121
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNE 212
LM+ +I++A PGRL DHL F F NLK LV+DEADR+L F++ + I + LP +
Sbjct: 122 LMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP-K 180
Query: 213 DRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXX 272
RQ++ FSAT +++ + + + DS D +T + L+Q Y++C R
Sbjct: 181 TRQNLFFSATMKDFIKESSIFPIASDCFEWSQDS--DVATVETLDQRYLLCADYDRDMVL 238
Query: 273 XXXXKR----NQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 328
++ N+ V++F ++ + + L +++ + LHG +Q++R F
Sbjct: 239 IEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFK 298
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTP 388
+ + L+ TDVAARGLDIP+V+ ++ P P++YIHRV +F P
Sbjct: 299 SNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFP 358
Query: 389 TELGFL 394
+L L
Sbjct: 359 RDLELL 364
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 185 bits (469), Expect = 2e-46
Identities = 109/363 (30%), Positives = 195/363 (53%), Gaps = 9/363 (2%)
Query: 34 GSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI 93
G F L L AI K G+ T +Q +T+P +L+G DV+ A+TGSGKT AFLIP +
Sbjct: 28 GGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPML 87
Query: 94 EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
E L + P+ G ++++PTR+LA Q +EL +F +++GG + + ++L
Sbjct: 88 EKLK--QHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEEL 145
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
KG +++IATPGRL+ L + ++ +V DEAD + +GF +++ QI+ L +E+
Sbjct: 146 TKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQL-SEN 204
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
RQ++LFSAT + + + A+ LR P + +D E S L+ ++ +++
Sbjct: 205 RQTLLFSATLPSALAEFAKAGLRE-PQLVRLDVENKIS--PDLKLSFLTVRPEEKYSALL 261
Query: 274 XXXKR--NQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
+ + ++ ++F+S+ + V++ L ++ +G Q R F +
Sbjct: 262 YLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARK 321
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTEL 391
+L+ TD+AARG+DIP +D +I +D P P+ ++HRV + F+TP ++
Sbjct: 322 TMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRV-GRAARAGRTGCAYSFVTPEDM 380
Query: 392 GFL 394
++
Sbjct: 381 PYM 383
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 184 bits (467), Expect = 3e-46
Identities = 124/355 (34%), Positives = 197/355 (54%), Gaps = 14/355 (3%)
Query: 21 TVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKT 80
T+ D T +E F + D M I K GF + TA+Q + P ++G+D++G A+T
Sbjct: 139 TIKGDQVPTPSIE--FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQT 196
Query: 81 GSGKTLAFLIPAIEMLHSL-KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF-- 137
GSGKTLA+++PA+ +++ + + +G +V+ PTRELA QI VA +EF S T
Sbjct: 197 GSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVA---IEFGSNTHVR 253
Query: 138 -GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI 196
+ GGA + Q+A L +GV I+IATPGRL+D L+ + K LV+DEADR+L++
Sbjct: 254 NTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSL-KRCTYLVLDEADRMLDM 312
Query: 197 GFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGL 256
GFE ++R+I++ + DRQ +++SAT +V LA L + +N+ S ++ + L
Sbjct: 313 GFEPQIRKIMQQI-RPDRQVLMWSATWPKEVRQLAEEFLN-NYIQVNIGSLSLSANHNIL 370
Query: 257 EQGYVVCESDK--RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGK 314
+ V E++K + + K I+F+ + V ++ +HG
Sbjct: 371 QIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGD 430
Query: 315 QKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ QQ+R F N ILV TDVAARGLD+ V ++I +D P + DY+HR+
Sbjct: 431 KSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRI 485
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 182 bits (463), Expect = 8e-46
Identities = 121/361 (33%), Positives = 191/361 (52%), Gaps = 9/361 (2%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F + M I + FT+ TA+Q + P L+G D++G A+TGSGKTL++L+PAI
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 95 MLHSLKFKPR-NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
++ F R +G +V+ PTRELA Q+ VA E + GGA + + L
Sbjct: 155 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
+GV I IATPGRL+D L+ K + + LV+DEADR+L++GFE ++R+I+ + D
Sbjct: 215 ERGVEICIATPGRLIDFLECGKTNL-RRTTYLVLDEADRMLDMGFEPQIRKIVDQI-RPD 272
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVC---ESDKRXX 270
RQ++++SAT +V LA L+ + IN+ + + S + Q VC E D++
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDY-IHINIGA-LELSANHNILQIVDVCHDVEKDEKLI 330
Query: 271 XXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNA 330
++ K IVF+ + + P + +HG + QQ+R EF +
Sbjct: 331 RLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHG 390
Query: 331 ERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTE 390
+ IL+ TDVA+RGLD+ V ++I +D P+ DYIHR+ + F TP
Sbjct: 391 KAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI-GRTARSTKTGTAYTFFTPNN 449
Query: 391 L 391
+
Sbjct: 450 I 450
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 181 bits (460), Expect = 2e-45
Identities = 124/352 (35%), Positives = 195/352 (55%), Gaps = 24/352 (6%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F++ M+ + + G+++ T VQ +IP LLA +D++ A+TGSGKT AFL+P I+
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ- 183
Query: 96 LHSLKFKP--------RNGTGV-----IVITPTRELALQIFGVARELMEFHSQTFGIVIG 142
H L P NG +V++PTRELA+QI A + + I+ G
Sbjct: 184 -HILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYG 242
Query: 143 GA-NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFED 200
G N R + ++L G +ILIATPGRL+D ++ +GFI + LV+DEADR+L++GFE
Sbjct: 243 GRENYRDQVNRLRAGTHILIATPGRLIDIIE--QGFIGLAGCRYLVLDEADRMLDMGFEP 300
Query: 201 EMRQIIK--ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQ 258
++R+I+ + P R + +FSAT +++ LA+ L+ +F+ V + ST++ +EQ
Sbjct: 301 QIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVG--RVGSTSENIEQ 358
Query: 259 GYV-VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQ 317
+ V E +KR + + V+VF+ + A LN + + +HG KQ
Sbjct: 359 RLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQ 418
Query: 318 QKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+R F + + ILV T VAARGLDIP V +I +D P D +Y+HR+
Sbjct: 419 IERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI 470
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 181 bits (460), Expect = 2e-45
Identities = 124/352 (35%), Positives = 195/352 (55%), Gaps = 24/352 (6%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F++ M+ + + G+++ T VQ +IP LLA +D++ A+TGSGKT AFL+P I+
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ- 180
Query: 96 LHSLKFKP--------RNGTGV-----IVITPTRELALQIFGVARELMEFHSQTFGIVIG 142
H L P NG +V++PTRELA+QI A + + I+ G
Sbjct: 181 -HILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYG 239
Query: 143 GA-NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFED 200
G N R + ++L G +ILIATPGRL+D ++ +GFI + LV+DEADR+L++GFE
Sbjct: 240 GRENYRDQVNRLRAGTHILIATPGRLIDIIE--QGFIGLAGCRYLVLDEADRMLDMGFEP 297
Query: 201 EMRQIIK--ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQ 258
++R+I+ + P R + +FSAT +++ LA+ L+ +F+ V + ST++ +EQ
Sbjct: 298 QIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVG--RVGSTSENIEQ 355
Query: 259 GYV-VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQ 317
+ V E +KR + + V+VF+ + A LN + + +HG KQ
Sbjct: 356 RLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQ 415
Query: 318 QKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+R F + + ILV T VAARGLDIP V +I +D P D +Y+HR+
Sbjct: 416 IERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRI 467
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 181 bits (459), Expect = 2e-45
Identities = 121/353 (34%), Positives = 181/353 (50%), Gaps = 18/353 (5%)
Query: 18 ETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGA 77
+TE V TAT G F D L ++ I + GF + + +Q +IP L G D+L
Sbjct: 144 QTEDV---TATKGN---EFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILAR 197
Query: 78 AKTGSGKTLAFLIPAIEMLHSLKFKPRNGT-GVIVITPTRELALQIFGVARELMEFHSQT 136
AK G+GKT AF IP +E K P N +++ PTRELALQ V +EL ++
Sbjct: 198 AKNGTGKTGAFCIPTLE-----KIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIE 252
Query: 137 FGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI 196
+ GG + R + +L + V++L+ TPGR+LD L + K+ LV+DEAD++L +
Sbjct: 253 VMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD-LAKKGVCVLKDCAMLVMDEADKLLSV 311
Query: 197 GFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGL 256
F+ + ++I+ LP E RQ ++FSAT V+ L+ P IN+ D T G+
Sbjct: 312 EFQPSIEELIQFLP-ESRQILMFSATFPVTVKSFKDRYLKK-PYIINL---MDQLTLMGV 366
Query: 257 EQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQK 316
Q Y E ++ + Q + I+F +S N V+ A+ + + +H K
Sbjct: 367 TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMV 426
Query: 317 QQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q R F +F N LVCTD+ RG+DI AV+ +I FD P Y+HRV
Sbjct: 427 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRV 479
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 181 bits (458), Expect = 3e-45
Identities = 136/406 (33%), Positives = 212/406 (51%), Gaps = 24/406 (5%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F L LS +++ M TQ TA+Q IP +L G+D +G AKTGSGKT+AF P M
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGP---M 60
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L P GV V+TPTRELA+QI L + +++GG + Q+A L +
Sbjct: 61 LTKWSEDPSGMFGV-VLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQR 119
Query: 156 GVNILIATPGRLLDHLQN----TKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPN 211
+ +IATPGRL H+ + T G + + K LV+DEAD +L F D + I LP
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLMR-AKYLVLDEADILLTSTFADHLATCISALPP 178
Query: 212 ED-RQSMLFSATQTTKVEDLARISLRPG--PLFI-NVDSEKDTSTADGLEQGYVVCESDK 267
+D RQ++LF+AT T +V+ L ++ G PLF V+S + + L+ Y++
Sbjct: 179 KDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHV 238
Query: 268 RXXXXXXXX--KRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFF 325
+ + + K I+F++ + + L +++ V LH + QQ+RTN+
Sbjct: 239 KEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLH 298
Query: 326 EF-CNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLM 384
F NA R IL+ TDVA+RGLDIP V+ ++ +D P DP +IHR ++
Sbjct: 299 RFRANAAR-ILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHR-SGRTARAGRIGDAIS 356
Query: 385 FLTPTELGFLRYLKAAKVPLNEYEFPTNKI---ANVQAQLEKLIKS 427
F+T ++ ++A + +N+ TNK+ A ++ L K+ K+
Sbjct: 357 FVTQRDVS---RIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKA 399
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 181 bits (458), Expect = 3e-45
Identities = 123/371 (33%), Positives = 201/371 (54%), Gaps = 22/371 (5%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
+A SE+ ++E E + + EG+FS+ +S+ T+K + G T + +Q +T +
Sbjct: 97 EAASEESNSEIEQEIP----VEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHV 152
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG--VIVITPTRELALQIFGVA 126
+GKD++ A+TG+GKT +F IP IE LH + G V+V+ PTRELA Q V+
Sbjct: 153 YSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQ---VS 209
Query: 127 RELMEFHSQ-TFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKAL 185
++ + + + GG + +++ G++IL+ TPGR+ DH+QN K + K LK +
Sbjct: 210 KDFSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTK-LKHV 268
Query: 186 VIDEADRILEIGFEDEMRQIIKILPNEDR----QSMLFSATQTTKVEDLARISLRPGPLF 241
V+DE D++L++GF D++ +I+ + +D Q++LFSAT V ++A+ ++
Sbjct: 269 VLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQ 328
Query: 242 INVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXK--RNQKKKVIVFLSSCNSVKYYAE 299
+++ +K TA +E + C +R + + + I+F C + K E
Sbjct: 329 VDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIF---CETKKEAQE 385
Query: 300 LL--NYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFD 357
L + I LHG Q++R T F N G+LV T+VAARGLDIP VD +IQ
Sbjct: 386 LSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSS 445
Query: 358 PPDDPRDYIHR 368
PP D YIHR
Sbjct: 446 PPKDVESYIHR 456
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 181 bits (458), Expect = 3e-45
Identities = 120/345 (34%), Positives = 178/345 (50%), Gaps = 15/345 (4%)
Query: 26 TATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKT 85
TAT G F D L +K I + GF + + +Q +IP L G D+L AK G+GKT
Sbjct: 119 TATKGN---EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
Query: 86 LAFLIPAIEMLHSLKFKPRNGT-GVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGA 144
AF IP +E K P N +++ PTRELALQ V +EL ++ + + GG
Sbjct: 176 GAFCIPVLE-----KIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGT 230
Query: 145 NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQ 204
+ R + +L + V++L+ TPGR+LD L + K+ LV+DEAD++L F+ + +
Sbjct: 231 SLRDDIMRLHQPVHLLVGTPGRILD-LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEE 289
Query: 205 IIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCE 264
+I+ LP ++RQ ++FSAT V+ LR P IN+ D T G+ Q Y E
Sbjct: 290 LIQFLP-QNRQFLMFSATFPVTVKAFKDRHLRK-PYVINL---MDQLTLMGVTQYYAFVE 344
Query: 265 SDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
++ + Q + I+F +S N V+ A+ + + +H K Q R F
Sbjct: 345 ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVF 404
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
EF N LVCTD+ RG+DI AV+ +I FD P Y+HRV
Sbjct: 405 HEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRV 449
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 180 bits (457), Expect = 4e-45
Identities = 115/366 (31%), Positives = 184/366 (49%), Gaps = 38/366 (10%)
Query: 34 GSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI 93
G + + L KAI K GF Q T +Q +TIP ++ GKDV+ ++TGSGKT AF+IP
Sbjct: 24 GGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIP-- 81
Query: 94 EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
ML LK + G ++++PTRELALQ F V +EL F ++GG ++ +
Sbjct: 82 -MLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTI 140
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
+ +IL+ATPGRLL H+ ++ +V DEADR+ E+GF+D++ + +K +P E
Sbjct: 141 HENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIP-ES 198
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
RQ++LFSAT + D A+ L P+ + +D D +D L + +C D++
Sbjct: 199 RQTLLFSATLPKMLVDFAKAGL-TDPMLVRLD--VDEKVSDKLSMVFCMCRPDEKLFALL 255
Query: 274 XXXKR------------------------------NQKKKVIVFLSSCNSVKYYAELLNY 303
+ + K+ +VF ++ V+Y +L+
Sbjct: 256 HLCRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHR 315
Query: 304 IDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPR 363
+ ++ + R +F + ILV TDVAARG+DIP +D +I P +
Sbjct: 316 AGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAK 375
Query: 364 DYIHRV 369
++HRV
Sbjct: 376 LFVHRV 381
>Hs22041318 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 260
Score = 180 bits (456), Expect = 5e-45
Identities = 104/273 (38%), Positives = 154/273 (56%), Gaps = 58/273 (21%)
Query: 215 QSMLFSATQTTKVEDLARIS---LRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXX 271
++M FSATQT K+EDLARIS + ++ VD++K T+T D L++GYVV
Sbjct: 2 ETMPFSATQTQKLEDLARISPKKKKKEQMYAGVDNDKATATVDSLKRGYVV--------- 52
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
K +V ELH FF+FCNA+
Sbjct: 53 -------QAKLRV-------------------------ELH-----------FFQFCNAD 69
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTEL 391
GIL CTD A R LDIP WI+Q+ PPDDP++Y+HR +L+ P EL
Sbjct: 70 SGIL-CTDEAGRELDIPG--WIVQYYPPDDPKEYVHRRGTIARDLNERGHALLSFCPEEL 126
Query: 392 GFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSL 451
GF+ YLK KVPL+E++F KI+++Q+ KL+K NY+LH+ A++ Y+SY++ SHSL
Sbjct: 127 GFVCYLKQPKVPLSEFDFSWPKISDIQSWFVKLMKKNYFLHKSAQEAYKSYIRVNDSHSL 186
Query: 452 KTVYQIDKLDLAKVAKSYGFPVPPKVNITIGAS 484
+ ++ ++ L+L +VA S+GF VPP V++ + ++
Sbjct: 187 RQIFNVNNLNLPQVALSFGFKVPPSVDVNVNSN 219
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 179 bits (455), Expect = 6e-45
Identities = 127/369 (34%), Positives = 191/369 (51%), Gaps = 53/369 (14%)
Query: 22 VVKDTATTGEVEGSFSDLKLSDGTMKAIGK-MGFTQMTAVQTRTIPPLLAGKDVLGAAKT 80
VVK +F +L L + I + + MT+VQ ++IP LL G+D L ++T
Sbjct: 218 VVKQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQT 277
Query: 81 GSGKTLAFLIPAIEMLHSLKFKPRNGTG--VIVITPTRELALQIFGVARELME-FHSQTF 137
GSGKTLA+ IP ++ L +++ K + G +V+ PTRELALQ F ++L++ F
Sbjct: 278 GSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVP 337
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG 197
G+++GG R+ E +L KG+NILI+TPGRL+DH+++TK F L+ LV DEADRIL++G
Sbjct: 338 GVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLG 397
Query: 198 FEDEMRQIIKILPNE--DRQSMLFSATQTTKVEDLARISLRPGPLFINV----------- 244
FE ++ I+ + E RQ++L SAT T V LA ISL P+ I+V
Sbjct: 398 FEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLH-DPVSISVLDKSHDQLNPK 456
Query: 245 -------------DSEKDTSTADGLEQGYVVCESDKR----XXXXXXXXKRNQKKKVIVF 287
D + + L+Q V S R K + +K++VF
Sbjct: 457 DKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVF 516
Query: 288 LSSCNSVKYYAELL------------------NYIDLPVLELHGKQKQQKRTNTFFEFCN 329
SSC V+++ L + L L LHG +Q++RT F EF +
Sbjct: 517 FSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSH 576
Query: 330 AERGILVCT 338
+ RG+L+CT
Sbjct: 577 SRRGVLLCT 585
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 179 bits (454), Expect = 8e-45
Identities = 122/371 (32%), Positives = 195/371 (51%), Gaps = 16/371 (4%)
Query: 11 ESEQDHAETETVVKDTATTGE--VEG--------SFSDLKLSDGTMKAIGKMGFTQMTAV 60
ES A T+T V++ E VEG SF D+ D ++ + K GFT+ T +
Sbjct: 66 ESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPI 125
Query: 61 QTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPR-NGTGVIVITPTRELA 119
Q++ P + G+D++G A+TGSGKTL++L+PAI +++ +G V+V+ PTRELA
Sbjct: 126 QSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELA 185
Query: 120 LQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIF 179
+QI A + + GG + + L KGV I+IATPGRL+D +++ +
Sbjct: 186 VQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNL- 244
Query: 180 KNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISL-RPG 238
+ + LV+DEADR+L++GF+ ++R+I+ + DRQ++ +SAT +VE L++ L P
Sbjct: 245 RRVTYLVLDEADRMLDMGFDPQIRKIVSHI-RPDRQTLYWSATWPKEVEQLSKKFLYNPY 303
Query: 239 PLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYA 298
+ I K + V+ ES K +++VFL +
Sbjct: 304 KVIIGSSDLKANRAIRQIVD--VISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQIT 361
Query: 299 ELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDP 358
L P L +HG + Q +R EF + + I+ TDVAARGLD+ V ++I +D
Sbjct: 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDF 421
Query: 359 PDDPRDYIHRV 369
P DY+HR+
Sbjct: 422 PGSLEDYVHRI 432
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 179 bits (454), Expect = 8e-45
Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 10/340 (2%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
FS++ L D MK I + G+ TA+Q + P ++G + +G AKTGSGKTL +++PAI
Sbjct: 141 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 200
Query: 96 LHSLKFKPR-NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
+++ + R +G +V+ PTRELA QI VA E V GGA + + L
Sbjct: 201 INNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQ 260
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214
+G I+IATPGRL+D L + K LV+DEADR+L++GFE ++R+I+ + DR
Sbjct: 261 RGCEIVIATPGRLIDFL-SAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQI-RPDR 318
Query: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVC-----ESDKRX 269
Q++++SAT +V+ LA L + IN+ S + S + Q VC E +
Sbjct: 319 QTLMWSATWPKEVKQLAEDFLG-NYIQINIGS-LELSANHNIRQVVDVCDEFSKEEKLKT 376
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
K+I+F+ + V + + +HG + Q +R EF +
Sbjct: 377 LLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRS 436
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ ILV TDVAARGLD+ + ++I FD P + DYIHR+
Sbjct: 437 GKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRI 476
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 179 bits (453), Expect = 1e-44
Identities = 126/389 (32%), Positives = 202/389 (51%), Gaps = 18/389 (4%)
Query: 6 RVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTI 65
R+ +E E +VK T ++ F + S + ++ + GF++ TA+Q +
Sbjct: 60 RMTPSEVSSFRKTNEMIVKGTNVPHPIQ-KFEEAGFSSEVVSSLVEKGFSEPTAIQGQGW 118
Query: 66 PPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKP-RNGTG--VIVITPTRELALQI 122
P L+G+D++G A+TGSGKTL+F++PA+ +H+ +P R G G V+V+ PTREL +QI
Sbjct: 119 PMALSGRDMVGIAQTGSGKTLSFILPAL--VHAKDQQPLRRGDGPIVLVLAPTRELVMQI 176
Query: 123 FGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNL 182
V E + V GGA+ + + L +G ++IATPGRL+D L + +
Sbjct: 177 KKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLID-LHDQGHAPLSRV 235
Query: 183 KALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFI 242
LV+DEADR+L++GFE ++R+II N +RQ++++SAT +V LA + +I
Sbjct: 236 TFLVLDEADRMLDMGFEPQLRKIIP-KTNANRQTLMWSATWPREVRGLAESYMNE---YI 291
Query: 243 NVD-SEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLS---SCNSVKYYA 298
V ++ T ++Q VC ++ + KVIVF + +C+ ++Y
Sbjct: 292 QVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGDKVIVFCNMKRTCDDLEY-- 349
Query: 299 ELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDP 358
+LN LHG + Q R +F + R IL+ T+VA RGLD+ V +I FD
Sbjct: 350 -VLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDF 408
Query: 359 PDDPRDYIHRVXXXXXXXXXXXXSLMFLT 387
P DY+HR+ S F T
Sbjct: 409 PGSCEDYVHRIGRTARGNTKEGISHTFFT 437
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 178 bits (452), Expect = 1e-44
Identities = 114/345 (33%), Positives = 186/345 (53%), Gaps = 16/345 (4%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI- 93
SF ++K ++ + K G T +Q + IP +L+G+D++G A TGSGKTL F +P I
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 94 ---EMLHSLKFKPRNGTGVIVITPTRELALQIFGV----ARELMEFHSQTF--GIVIGGA 144
E L F R G ++I P+RELA Q G+ R L E S + IGG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 145 NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQ 204
+ +++ + + GV++++ATPGRL+D LQ K + L +DEADR++++GFE ++R
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRT 360
Query: 205 IIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCE 264
I + RQ++LFSAT K+++ A+ +L P+ INV ++ D +++ V E
Sbjct: 361 IFSYFKGQ-RQTLLFSATMPKKIQNFAKSALVK-PVTINV-GRAGAASLDVIQEVEYVKE 417
Query: 265 SDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
K K V++F V E L + + +HG + Q++RT
Sbjct: 418 EAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 475
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F ++ +LV TDVA++GLD PA+ +I +D P++ +Y+HR+
Sbjct: 476 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRI 520
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 178 bits (451), Expect = 2e-44
Identities = 121/374 (32%), Positives = 205/374 (54%), Gaps = 18/374 (4%)
Query: 10 AESEQDHAETETVVKDTATTGEVEG---SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIP 66
A+SEQ AE ++ T + E+ SF + L ++ + + GFT+ TA+Q++ P
Sbjct: 210 AKSEQQVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWP 269
Query: 67 PLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN-GTGVIVITPTRELALQIFGV 125
L+G+D++G A+TGSGKTLA+++PAI + + R G +V+ PTRELA QI V
Sbjct: 270 IALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSV 329
Query: 126 ARELMEFHSQTFG--IVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLK 183
R+ + GG+++ +A L +GV ++IATPGRL+D L+N + +
Sbjct: 330 VRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLEN-RNTNLQRCT 388
Query: 184 ALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFIN 243
LV+DEADR+L++GFE ++R+II+ + DRQ +++SAT +V+ LA L + IN
Sbjct: 389 YLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQVVMWSATWPKEVQALAGDFLNDY-IQIN 446
Query: 244 VDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKR--------NQKKKVIVFLSSCNSVK 295
+ S + S + Q +C ++ N K+IVF+ + V+
Sbjct: 447 IGS-MNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVE 505
Query: 296 YYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQ 355
+++ +HG + Q +R + +F N + IL+ TDVA+RGLD+ + ++I
Sbjct: 506 DILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 565
Query: 356 FDPPDDPRDYIHRV 369
+D P+ +Y+HR+
Sbjct: 566 YDYPNSSENYVHRI 579
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 177 bits (449), Expect = 3e-44
Identities = 120/362 (33%), Positives = 188/362 (51%), Gaps = 8/362 (2%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI- 93
+F D S M AI K + + TA+Q + +P +L+G+DV+G AKTGSGKT AF++P I
Sbjct: 229 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
Query: 94 EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
++ + + G ++ PTRELA QIF A++ + + V GG ++ ++ +L
Sbjct: 289 HIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL 348
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQII-KILPNE 212
G I++ATPGRL+D L+ K LV+DEADR+ ++GFE ++R I+ +I P
Sbjct: 349 KAGCEIVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP-- 405
Query: 213 DRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVV-CESDKRXXX 271
DRQ++LFSAT KVE LAR + P+ + V E + D + V+ +++K
Sbjct: 406 DRQTLLFSATMPWKVEKLAR-EILSDPIRVTV-GEVGMANEDITQVVNVIPSDAEKLPWL 463
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
+ V+VF S +V L V LHG + Q R T +F +
Sbjct: 464 LEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGV 523
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTEL 391
+L+ TDVAARGLDI ++ ++ +D D ++HR+ + +T E
Sbjct: 524 HHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREA 583
Query: 392 GF 393
F
Sbjct: 584 RF 585
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 177 bits (448), Expect = 4e-44
Identities = 120/366 (32%), Positives = 196/366 (52%), Gaps = 11/366 (3%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
DAE + E E VV V +F + + +K + ++GF T +Q + P
Sbjct: 98 DAEVTEYRKEKEIVVHGLNVPKPVT-TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMA 156
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKF-KPRNGTGVIVITPTRELALQIFGVAR 127
++G+D++G + TGSGKTL++ +PAI +++ P +G V+V+ PTRELA+QI
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216
Query: 128 ELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVI 187
+ + V GG R + L++GV I IATPGRLLD L + K + + + LV+
Sbjct: 217 KFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNL-RRVTYLVL 275
Query: 188 DEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVD-S 246
DEADR+L++GFE ++R+I+ + DRQ+++FSAT +V+ LAR L +I V
Sbjct: 276 DEADRMLDMGFEPQIRKIVDQI-RPDRQTVMFSATWPKEVQRLARDYLND---YIQVTVG 331
Query: 247 EKDTSTADGLEQGY-VVCESDKRXXXXXXXXK--RNQKKKVIVFLSSCNSVKYYAELLNY 303
D + + ++Q VV +DKR + +++ KV++F + L
Sbjct: 332 SLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQ 391
Query: 304 IDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPR 363
P L +HG + Q +R EF + I+V TDVA+RG+D+ + + +D P +
Sbjct: 392 DGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTE 451
Query: 364 DYIHRV 369
DY+HR+
Sbjct: 452 DYVHRI 457
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 177 bits (448), Expect = 4e-44
Identities = 118/317 (37%), Positives = 182/317 (57%), Gaps = 20/317 (6%)
Query: 33 EGSFSDLK--LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
EGS+ L L + A+ ++GF MT VQ+ TIP + KDV A TGSGKTLAF+I
Sbjct: 6 EGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVI 65
Query: 91 PAIEMLHSLKFK-PRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIV-IGGANRRQ 148
P +E+L + K ++ G I+ITPTRELA+QI V + + I+ IGG N +
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGE 125
Query: 149 EADKL-MKGVNILIATPGRLLDHLQNTK-----GFIFKNLKALVIDEADRILEIGFEDEM 202
+ ++ +G NI++ATPGRL D + ++L LV+DEADR+L++GFE +
Sbjct: 126 DVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASI 185
Query: 203 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVD-----SEKDTSTADGLE 257
I++ LP + R++ LFSATQT +VE+L R LR P+ ++V + T LE
Sbjct: 186 NTILEFLPKQ-RRTGLFSATQTQEVENLVRAGLR-NPVRVSVKEKGVAASSAQKTPSRLE 243
Query: 258 QGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYI--DLPVLELHGKQ 315
Y+VC++D++ + ++++K +VF S+C V+YY + L + + ++ +HGK
Sbjct: 244 NYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM 303
Query: 316 KQQKRTNTFFEFCNAER 332
K KR F EF +R
Sbjct: 304 K-YKRNKIFMEFRKLQR 319
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 177 bits (448), Expect = 4e-44
Identities = 124/404 (30%), Positives = 207/404 (50%), Gaps = 16/404 (3%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTR 63
+KRV ++ H ++ +++T T + EG+FS+ +S+ T+K + G T + +Q +
Sbjct: 108 SKRVSSLDTST-HKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVK 166
Query: 64 TIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--HSLKFKPRNGTGVIVITPTRELALQ 121
T P+ GKD++ A+TG+GKT +F IP IE L + K V+V+ PTRELA Q
Sbjct: 167 TFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQ 226
Query: 122 IFGVARELMEF-HSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFK 180
VA++ + + GG + + + + + G++IL+ TPGR+ DHLQ+ + + K
Sbjct: 227 ---VAKDFKDITRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSK 283
Query: 181 NLKALVIDEADRILEIGFEDEMRQII----KILPNEDRQSMLFSATQTTKVEDLARISLR 236
L+ +V+DE D++L++GF +++ II K ++ Q++LFSAT V +A+ ++
Sbjct: 284 -LRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMK 342
Query: 237 PGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXK--RNQKKKVIVFLSSCNSV 294
+++ + A +E + C +R + + + I+F + +V
Sbjct: 343 SRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNV 402
Query: 295 KYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWII 354
A + +I LHG Q +R T F +LV T+VAARGLDIP VD +I
Sbjct: 403 TEMA-MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVI 461
Query: 355 QFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLK 398
Q PP D YIHR + F P E G LRY++
Sbjct: 462 QSSPPQDVESYIHR-SGRTGRAGRTGICICFYQPRERGQLRYVE 504
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 176 bits (447), Expect = 6e-44
Identities = 112/341 (32%), Positives = 191/341 (55%), Gaps = 17/341 (4%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F+ L D + + K G+ T +Q +IP + +G+D++ A+TGSGKT AFL+P +
Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306
Query: 96 L----HSLKF-KPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
L H L+ +P+ V++++PTRELA+QIF AR+ GIV GG + R +
Sbjct: 307 LLEDPHELELGRPQ----VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQN 362
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFEDEMRQIIK-I 208
+ + +G +++IATPGRLLD + T FI F++ + +V+DEADR+L++GF ++MR+I+ +
Sbjct: 363 ECITRGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV 420
Query: 209 LPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKR 268
+ Q+++FSAT +++ +A L+ +F+ + + +D + Y V + KR
Sbjct: 421 TMRPEHQTLMFSATFPEEIQRMAGEFLK-NYVFVAIGIVGG-ACSDVKQTIYEVNKYAKR 478
Query: 269 XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 328
+ Q IVF+ + + A L+ + P +HG + Q +R +F
Sbjct: 479 SKLIEILSE--QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK 536
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
N +L+ T VA+RGLDI + +I +D P DY+HR+
Sbjct: 537 NGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRI 577
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 176 bits (447), Expect = 6e-44
Identities = 121/405 (29%), Positives = 201/405 (48%), Gaps = 19/405 (4%)
Query: 5 KRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRT 64
+ + + E E E +V+ + + SF ++K G + + G T +Q +
Sbjct: 149 REMSEEEREAVRHELRILVEGETPSPPIR-SFREMKFPKGILNGLAAKGIKNPTPIQVQG 207
Query: 65 IPPLLAGKDVLGAAKTGSGKTLAFLIP----AIEMLHSLKFKPRNGTGVIVITPTRELAL 120
+P +LAG+D++G A TGSGKTL F++P A+E +SL F+ G ++I P+RELA
Sbjct: 208 LPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAK 267
Query: 121 QIFGVARELMEFHSQTFG-------IVIGGANRRQEADKLMKGVNILIATPGRLLDHLQN 173
Q + + + H Q G + +GG + D + +GV+I++ATPGRL+D L
Sbjct: 268 QTHEIIQHYSK-HLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDK 326
Query: 174 TKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARI 233
K + L +DEADR++++GFE+++R I + RQ++LFSAT K+++ AR
Sbjct: 327 -KILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQ-RQTLLFSATMPKKIQNFARS 384
Query: 234 SLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNS 293
+L P+ INV S + YV E+ + V++F
Sbjct: 385 ALVK-PVTINVGRAGAASMNVTQQVEYVKQEAK---VVYLLDCLQKTAPPVLIFAEKKQD 440
Query: 294 VKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWI 353
V E L + + +HG + Q++R+ + ++ +LV TDVA++GLD P V +
Sbjct: 441 VDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHV 500
Query: 354 IQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLK 398
I +D PDD +Y+HR+ + + TE L LK
Sbjct: 501 INYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLK 545
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 176 bits (446), Expect = 7e-44
Identities = 121/367 (32%), Positives = 199/367 (53%), Gaps = 13/367 (3%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
D+E Q E E + + +F + D + + GF + T +Q + P
Sbjct: 89 DSEIAQFRKENEMTISGHDIPKPIT-TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMA 147
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKF-KPRNGTGVIVITPTRELALQIFGVAR 127
L+G+D++G A TGSGKTL++ +P I +++ P +G V+V+ PTRELA+QI
Sbjct: 148 LSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQI---QT 204
Query: 128 ELMEF-HSQTFG--IVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKA 184
E +F HS V GG + Q+ L +G I+IATPGRL+D L+ K + K +
Sbjct: 205 ECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNL-KRVTY 263
Query: 185 LVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINV 244
LV+DEADR+L++GFE ++R+I+ + DRQ++++SAT +V+ LA L P+ + V
Sbjct: 264 LVLDEADRMLDMGFEPQIRKIVDQI-RPDRQTLMWSATWPKEVKQLAADYLND-PIQVQV 321
Query: 245 DSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKK--KVIVFLSSCNSVKYYAELLN 302
S + +++ + + VV + +KR +Q K ++F S+ + L
Sbjct: 322 GSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLR 381
Query: 303 YIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDP 362
P L +HG + Q++R EF N I+V TDVAARG+D+ ++++I +D P +
Sbjct: 382 EDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNI 441
Query: 363 RDYIHRV 369
DY+HR+
Sbjct: 442 EDYVHRI 448
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 176 bits (446), Expect = 7e-44
Identities = 162/566 (28%), Positives = 255/566 (44%), Gaps = 122/566 (21%)
Query: 51 KMGFTQMTAVQTRTIPPLL--AGK-DVLGAAKTGSGKTLAFLIPAIEMLHSLK--FKPRN 105
KM + T++Q + IP ++ AGK D A+TGSGKTL++L+P I + ++ +
Sbjct: 161 KMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTS 220
Query: 106 GTGVIVITPTRELALQIFGVARELMEF-HSQTFGIVIGGANRRQEADKLMKGVNILIATP 164
G +VI PTRELA QI+ V L+ H ++IGG ++ E +L KG N +I TP
Sbjct: 221 GAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTP 280
Query: 165 GRLLDHLQNTKGF---IFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQS----- 216
GR+LDHLQNTK + ++L+ +V+DE D+++E+GF++ + +IIKI+ + S
Sbjct: 281 GRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPK 340
Query: 217 -------MLFSATQTTKVEDLARISLRPGPLFIN---VDSEKDTSTADGLEQGYVVCESD 266
ML SAT T V L ++L+ L N DS+ T D L Q +
Sbjct: 341 LPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPK 400
Query: 267 KRXXXXX-----------XXXKRNQKKKVIVFLSSCNSVKYYAELLNYI----------- 304
R ++++ + IVF+S +SV+++ + +
Sbjct: 401 LRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDS 460
Query: 305 --------------------DLPVLELHGKQKQQKRTNTFFEFC---NAERG---ILVCT 338
D+ + +LHG QQ RT+T F A +G I+ CT
Sbjct: 461 VRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCT 520
Query: 339 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTE-------- 390
DVA+RGLD+P V +I+ DPP D++HRV SL+FL P E
Sbjct: 521 DVASRGLDLPHVGSVIELDPPFAVEDHLHRV-GRTARAGEKGESLLFLLPGEEEKYMDYI 579
Query: 391 -----LGF--LRYLKAAKVPL---------------------------NEYEFPTNKIAN 416
+G+ L++ K +P EYE+ TN
Sbjct: 580 QPYHPMGWELLKFDKEILMPAFKDVNVNRNDKFIRKDEKSSKNKDVGDKEYEWDTN-ATT 638
Query: 417 VQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASH--SLKTVYQIDKLDLAKVAKSYGFPVP 474
+E+ + + +A G+ S+++AYA+H K + + L L +AKS+G
Sbjct: 639 WHLNIERRVVGDSAFKNLAVKGFISHVRAYATHISQEKKFFNVKFLHLGHLAKSFGLRER 698
Query: 475 PKV----NITIGASGKTPATKKRRTK 496
PK + G S K P + + K
Sbjct: 699 PKAMGLQSSKDGNSEKKPTKENSKNK 724
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 175 bits (444), Expect = 1e-43
Identities = 115/357 (32%), Positives = 193/357 (53%), Gaps = 27/357 (7%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SF D++L++ + + + T VQ IP ++ G+D++ A+TGSGKT AFL+P +
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355
Query: 95 MLHSLKFKP-----------RNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGG 143
++ L P + +V+ PTRELA QIF A++ ++ GG
Sbjct: 356 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 415
Query: 144 ANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFEDEM 202
N ++ +L +G ++++ATPGRL D + T+G + +N++ LV+DEADR+L++GFE ++
Sbjct: 416 NNTSEQMRELDRGCHLIVATPGRLEDMI--TRGKVGLENIRFLVLDEADRMLDMGFEPQI 473
Query: 203 RQIIKIL---PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQG 259
R+I++ L P RQ+++FSAT ++++LA L +I + + ST++ + Q
Sbjct: 474 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSN---YIFLAVGRVGSTSENITQT 530
Query: 260 YV-VCESDKRXXXXXXXX------KRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELH 312
+ V E DKR + + ++F+ + E L + PV +H
Sbjct: 531 ILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIH 590
Query: 313 GKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
G + Q++R F + + ILV T VAARGLDIP V +I FD P D +Y+HR+
Sbjct: 591 GDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI 647
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 175 bits (443), Expect = 2e-43
Identities = 120/329 (36%), Positives = 187/329 (56%), Gaps = 12/329 (3%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPA---IEMLHSLKFK 102
M+ I K GF + T +Q++ P +L G D++G A+TG+GKTL +L+P + + SLK +
Sbjct: 254 MENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQ 313
Query: 103 PRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIA 162
RN G++V+TPTRELALQ+ G + + V GG NR ++ ++L KGV+I+IA
Sbjct: 314 -RNRPGMLVLTPTRELALQVEGECCKY-SYKGLRSVCVYGGGNRDEQIEELKKGVDIIIA 371
Query: 163 TPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPN--EDRQSMLFS 220
TPGRL D LQ + KN+ LV+DEAD++L++GFE QI+KIL + DRQ+++ S
Sbjct: 372 TPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEP---QIMKILLDVRPDRQTVMTS 427
Query: 221 ATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQ 280
AT V LA+ L+ P+ + V + + + + V E +K +
Sbjct: 428 ATWPHSVHRLAQSYLKE-PMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSS 486
Query: 281 KKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDV 340
KVIVF+S + + L ++ V LHG ++Q+ R F + IL+ TD+
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546
Query: 341 AARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
A+RGLD+ V + FD P + +Y+HR+
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRI 575
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 174 bits (442), Expect = 2e-43
Identities = 122/354 (34%), Positives = 190/354 (53%), Gaps = 24/354 (6%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SFSD+++ + M I +T+ T VQ IP + +D++ A+TGSGKT AFL+P +
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 95 MLHS------LKFKPRNGTG--------VIVITPTRELALQIFGVARELMEFHSQTFGIV 140
++S L+ NG +V+ PTRELA+QI+ AR+ +V
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300
Query: 141 IGGANRRQEADKLMKGVNILIATPGRLLDHLQNTK-GFIFKNLKALVIDEADRILEIGFE 199
GGA+ Q+ L +G ++L+ATPGRL+D ++ K G F K LV+DEADR+L++GFE
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFE 358
Query: 200 DEMRQIIK---ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGL 256
++R+I++ + P R +M+FSAT +++ LAR L +I + + ST++ +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE---YIFLAVGRVGSTSENI 415
Query: 257 EQGYV-VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQ 315
Q V V ESDKR + +VF+ + + L + +HG +
Sbjct: 416 TQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDR 475
Query: 316 KQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q+ R +F + + ILV T VAARGLDI V +I FD P D +Y+HR+
Sbjct: 476 SQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 529
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 174 bits (440), Expect = 4e-43
Identities = 117/371 (31%), Positives = 199/371 (53%), Gaps = 13/371 (3%)
Query: 1 MAGNKRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAV 60
M+ ++ R ++ D E E V++ + E+ SF D+ LS+ ++ I GF + +A+
Sbjct: 1 MSASQDSRSRDNGPDGMEPEGVIE--SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAI 58
Query: 61 QTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELAL 120
Q R I P + G DV+ A++G+GKT F I ++ + L K T +V+ PTRELA
Sbjct: 59 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLK---ATQALVLAPTRELAQ 114
Query: 121 QIFGVARELMEFHSQTFGIVIGGANRRQEADKL-MKGVNILIATPGRLLDHLQNTKGFIF 179
QI V L ++ + IGG N R E KL M+ +I++ TPGR+ D L N +
Sbjct: 115 QIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSP 173
Query: 180 KNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGP 239
K +K V+DEAD +L GF+D++ I + L N + Q +L SAT + V ++ + +R P
Sbjct: 174 KYIKMFVLDEADEMLSRGFKDQIYDIFQKL-NSNTQVVLLSATMPSDVLEVTKKFMRD-P 231
Query: 240 LFINVDSEKDTSTADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYA 298
+ I V +K+ T +G+ Q Y+ E ++ + + + ++F+++ V +
Sbjct: 232 IRILV--KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT 289
Query: 299 ELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDP 358
E ++ D V +HG Q++R EF + +L+ TD+ ARG+D+ V +I +D
Sbjct: 290 EKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 349
Query: 359 PDDPRDYIHRV 369
P + +YIHR+
Sbjct: 350 PTNRENYIHRI 360
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 174 bits (440), Expect = 4e-43
Identities = 117/325 (36%), Positives = 179/325 (55%), Gaps = 13/325 (4%)
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG----- 108
F + + +Q+ T P LL G+D++G AKTGSGKTLAF IPAI +H LK + G G
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAI--MHVLKKNKKIGGGSKKVN 191
Query: 109 --VIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGR 166
+V++PTRELA+QI V RE E V GG+++ + + GV+I+I TPGR
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGR 251
Query: 167 LLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTK 226
L D +++ ++ +V+DEADR+L++GFE+ +R I+ N+ RQ ++FSAT
Sbjct: 252 LRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNT-NKVRQMVMFSATWPLD 309
Query: 227 VEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES--DKRXXXXXXXXKRNQKKKV 284
V LA+ + P P+ + + S + D ++ V+ E D+R ++QK +V
Sbjct: 310 VHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRV 369
Query: 285 IVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARG 344
+VF + L + +HG + Q +RT + F +LV TDVAARG
Sbjct: 370 LVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARG 429
Query: 345 LDIPAVDWIIQFDPPDDPRDYIHRV 369
LDIP V+ +I + P DY+HR+
Sbjct: 430 LDIPDVEVVINYTFPLTTEDYVHRI 454
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 173 bits (439), Expect = 5e-43
Identities = 121/342 (35%), Positives = 193/342 (56%), Gaps = 26/342 (7%)
Query: 41 LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLK 100
L+ + + K+ + + +QT+ +P +++G+D +G AKTGSGKTL F++P ML +K
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLP---MLRHIK 592
Query: 101 FKP--RNGTGVI--VITPTRELALQIFGVARELMEFHSQTFGI----VIGGANRRQEADK 152
+P G G I V+ PTREL QI R+ S+ GI V GG+ Q+ +
Sbjct: 593 DQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKF----SKPLGIRCVPVYGGSGVAQQISE 648
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
L +G I++ TPGR++D L + G I + + LV+DEADR+ ++GFE ++ +II+ +
Sbjct: 649 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIR 708
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXX 270
E RQ++LFSAT +VE LAR L P+ I V + D + V ESD+
Sbjct: 709 PE-RQTVLFSATFPRQVETLARKVLNK-PVEIQVGG-RSVVNKDITQLVEVRPESDRFLR 765
Query: 271 XXXXXXKRNQKKKVIVFLSS---CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEF 327
+ ++K K++VF+ S C+++ Y +++ P L LHG + Q R +T +F
Sbjct: 766 LLELLGEWSEKGKILVFVQSQEKCDAL--YRDMIKS-SYPCLSLHGGKDQTDRESTISDF 822
Query: 328 CNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
N +L+ T VAARGLD+ ++ ++ FD P+ DY+HRV
Sbjct: 823 KNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV 864
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 173 bits (439), Expect = 5e-43
Identities = 107/338 (31%), Positives = 179/338 (52%), Gaps = 9/338 (2%)
Query: 34 GSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI 93
G F + L +K I K G+ T +Q +TIP +L G+DV+ AKTGSGKT FLIP
Sbjct: 95 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 154
Query: 94 EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
E L + +P G ++++PTRELA+Q + +EL F +V+GG + + +
Sbjct: 155 EKLQ--RREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAI 212
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
++++ATPGR L HL +++ +V DEADR+ E+GF +++ + + LP+
Sbjct: 213 HTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPS-S 270
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
RQ+++FSAT + + AR L P+ I +D E + D L ++ C D R
Sbjct: 271 RQTVMFSATLPKLLVEFARAGLN-DPVLIRLDVE--SKLPDALALKFLYCRPDDRYTALV 327
Query: 274 XXXKR--NQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
K + + +VF + + V+ + +L + ++ R +F N +
Sbjct: 328 VLLKYVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKK 387
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ TDVAARG+DIP++D+++ P P+ ++HRV
Sbjct: 388 VSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRV 425
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 172 bits (437), Expect = 8e-43
Identities = 114/336 (33%), Positives = 173/336 (50%), Gaps = 12/336 (3%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F D L + I + GF + + +Q IP + G+D+L AK G+GKT AF+IP +E
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106
Query: 95 MLHSLKFKPR-NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
K KP+ N +++ PTRELALQ V R L + + + GG N R + +L
Sbjct: 107 -----KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 161
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
+ V+IL+ TPGR+LD L + K + ++DEAD++L F+ + QI+ LP
Sbjct: 162 NETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP-PT 219
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
QS+LFSAT V++ L P IN+ E T G+ Q Y E ++
Sbjct: 220 HQSLLFSATFPLTVKEFMVKHLHK-PYEINLMEEL---TLKGITQYYAFVEERQKLHCLN 275
Query: 274 XXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERG 333
+ Q + I+F +S N V+ A+ + + H + KQQ+R F EF +
Sbjct: 276 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 335
Query: 334 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
LVC+D+ RG+DI AV+ +I FD P Y+HR+
Sbjct: 336 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRI 371
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 172 bits (437), Expect = 8e-43
Identities = 115/343 (33%), Positives = 185/343 (53%), Gaps = 11/343 (3%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI- 93
+F + L I K G+T++T VQ +IP +LAG+D++ A+TGSGKT AFL+P +
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348
Query: 94 EMLH----SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQE 149
M+H + +FK I++ PTREL QI+ AR+ ++ GG
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 408
Query: 150 ADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKI- 208
++++G NIL ATPGRL+D + K K +K LV+DEADR+L++GF EM+++I
Sbjct: 409 IRQIVQGCNILCATPGRLMDIIGKEK-IGLKQIKYLVLDEADRMLDMGFGPEMKKLISCP 467
Query: 209 -LPN-EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESD 266
+P+ E RQ+++FSAT +++ LA L+ LF+ V + + D + V +
Sbjct: 468 GMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAV-GQVGGACRDVQQTVLQVGQFS 526
Query: 267 KRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFE 326
KR + ++ +VF+ + + A L + +HG ++Q++R +
Sbjct: 527 KR-EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 585
Query: 327 FCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F + +LV T VAARGLDI V +I FD P +Y+HR+
Sbjct: 586 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 628
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 172 bits (437), Expect = 8e-43
Identities = 112/321 (34%), Positives = 180/321 (55%), Gaps = 10/321 (3%)
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN-GTGVIVI 112
F + T +Q+ + P ++G+D++ AKTGSGKTLAF++PA+ + + R G V+V+
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVL 208
Query: 113 TPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQ 172
PTRELA Q+ V+ + + GGA++ +A L +GV+I++ATPGRLLD L
Sbjct: 209 LPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLD 268
Query: 173 NTKGFIFKNLKALVIDEADRILEIGFEDEMRQII-KILPNEDRQSMLFSATQTTKVEDLA 231
N + K LV+DEADR+L++GFE ++++II +I P DRQ+++FSAT +V LA
Sbjct: 269 NGTTNM-KKCSYLVLDEADRMLDMGFEPQIKKIIGQIRP--DRQTLMFSATWPKEVRALA 325
Query: 232 RISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKR--NQKK-KVIVFL 288
+ F+NV S + + + Q + E + NQK+ K I+F+
Sbjct: 326 S-DFQKDAAFLNVGS-LELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFV 383
Query: 289 SSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIP 348
+ + P L +HG + Q +R EF + I++ TDVAARGLD+
Sbjct: 384 ETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVD 443
Query: 349 AVDWIIQFDPPDDPRDYIHRV 369
+ ++I +D P++ DY+HR+
Sbjct: 444 DIKFVINYDYPNNSEDYVHRI 464
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 172 bits (437), Expect = 8e-43
Identities = 120/359 (33%), Positives = 193/359 (53%), Gaps = 21/359 (5%)
Query: 19 TETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAA 78
+E V D+ + G + S+L +S +KA+ G ++ +Q + P + G+D++G A
Sbjct: 89 SERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRA 148
Query: 79 KTGSGKTLAFLIPAIEMLHSLKFKPRNGTG----VIVITPTRELALQIFGVARELMEFHS 134
+TG+GKTLAF IP I+ + +K+ ++G G +V+ PTRELA Q V +E E
Sbjct: 149 RTGTGKTLAFGIPIIDKI--IKYNAKHGRGRNPLCLVLAPTRELARQ---VEKEFRESAP 203
Query: 135 QTFGIVI-GGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRI 193
I + GG Q+ +L GV++ + TPGR++D L ++ +V+DEAD++
Sbjct: 204 SLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVID-LMKRGALNLSEVQFVVLDEADQM 262
Query: 194 LEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTA 253
L++GF +++ I++ LP E RQSM+FSAT + + L + L PL +++ + D A
Sbjct: 263 LQVGFAEDVEIILEKLP-EKRQSMMFSATMPSWIRSLTKKYLN-NPLTVDLVGDSDQKLA 320
Query: 254 DGLEQGYVVCESDKRXXXXXXXXKRNQKK-KVIVFLSSCNSVKYYAELLNYI---DLPVL 309
DG+ ++ +S R + K K IVF + K A+ L+Y
Sbjct: 321 DGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQT----KRDADRLSYALARSFKCE 376
Query: 310 ELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
LHG Q +R T F + ILV TDVAARGLD+P VD II ++ P++ ++HR
Sbjct: 377 ALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHR 435
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 172 bits (437), Expect = 8e-43
Identities = 117/347 (33%), Positives = 189/347 (53%), Gaps = 7/347 (2%)
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPR-NGTGVIVI 112
FT+ T +Q + P L+G+D++G A+TGSGKTLA+L+PAI ++ + R +G +V+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 171
Query: 113 TPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQ 172
PTRELA Q+ VA + + + GGA + + L +GV I IATPGRL+D L+
Sbjct: 172 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 231
Query: 173 NTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLAR 232
+ K + + LV+DEADR+L++GFE ++R+I+ + DRQ++++SAT +V LA
Sbjct: 232 SGKTNL-RRCTYLVLDEADRMLDMGFEPQIRKIVDQI-RPDRQTLMWSATWPKEVRQLAE 289
Query: 233 ISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK--RXXXXXXXXKRNQKKKVIVFLSS 290
LR INV + + ++ + L+ V ES+K + ++ K I+F+ +
Sbjct: 290 DFLRDYTQ-INVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVET 348
Query: 291 CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAV 350
+ P + +HG + Q +R EF + + IL+ TDVA+RGLD+ V
Sbjct: 349 KRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDV 408
Query: 351 DWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYL 397
++I +D P+ DY+HR+ + F TP L R L
Sbjct: 409 KFVINYDYPNSSEDYVHRI-GRTARSTNKGTAYTFFTPGNLKQAREL 454
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 172 bits (436), Expect = 1e-42
Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 19/377 (5%)
Query: 34 GSFSDLKLSDGTMKAIGKM-GFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPA 92
GSF ++K ++ + K G TA+Q + IP L+G+D++G A TGSGKT+ F++P
Sbjct: 189 GSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPL 248
Query: 93 I----EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELME------FHSQTFGIVIG 142
+ E L F G ++I P+RELA QIF + E+ + G+ IG
Sbjct: 249 VMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIG 308
Query: 143 GANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFEDE 201
G ++A + G++I++ATPGRL D L TK I + + LV+DEADR+L++GFEDE
Sbjct: 309 GVPIGEQAKDVRDGIHIVVATPGRLSDML--TKKIINLEVCRYLVLDEADRMLDMGFEDE 366
Query: 202 MRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV 261
++ I + RQ++LFSAT K++ A+ +L P+ +NV ++ + L++
Sbjct: 367 IKSIFYFFKAQ-RQTLLFSATMPRKIQFFAKSALVK-PIVVNV-GRAGAASLNVLQELEF 423
Query: 262 VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRT 321
V +K K + K V++F V E L + V +HG + Q R
Sbjct: 424 VRSENKLVRVLECLQKTSPK--VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRH 481
Query: 322 NTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXX 381
F E+ +LV TDVA++GLD ++ +I FD P+D +Y+HR+
Sbjct: 482 AGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLA 541
Query: 382 SLMFLTPTELGFLRYLK 398
+ +E+ L LK
Sbjct: 542 TTFINKKSEMSVLSDLK 558
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 172 bits (435), Expect = 1e-42
Identities = 124/381 (32%), Positives = 188/381 (48%), Gaps = 17/381 (4%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SF L L I K F + T +Q P LL+GKDV+G A+TGSGKT AF +PAI
Sbjct: 115 SFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
H + + + G V+VI+PTRELA QI+ L + V GG + ++ +L
Sbjct: 173 --HLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK 230
Query: 155 KGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
K +++ATPGRLLD LQ +G + + LV+DEADR+LE GFE++++ II+
Sbjct: 231 KS-QVVVATPGRLLDLLQ--EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASK 287
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
RQ+++F+AT +V +LA + P+ +++ + + + Q V + +
Sbjct: 288 RQTLMFTATWPKEVRELASTFMN-NPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLL 346
Query: 274 XXXKR-----NQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 328
K+ + +KV++F L Y V +HG QQ+RT EF
Sbjct: 347 ELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFK 406
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTP 388
+ + +L+ TDVAARGLDIP V +I P DY+HR+ +F
Sbjct: 407 SGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQ 466
Query: 389 TEL---GFLRYLKAAKVPLNE 406
+ G + L A P+ E
Sbjct: 467 EKHLAGGLVNVLNGANQPVPE 487
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 172 bits (435), Expect = 1e-42
Identities = 116/372 (31%), Positives = 189/372 (50%), Gaps = 44/372 (11%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F + L+ ++AI K GF T +Q +TIP LL G+DV+G A+TGSGKT AF+IP IE
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
L S + T ++++P RELALQ V ++ + ++GG + ++ L
Sbjct: 130 HLKST--LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214
+I++ATPGR L HL+ +++ +V DEADR+ E+GF ++ +I+ LP R
Sbjct: 188 GKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPT-SR 245
Query: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXX 274
Q++LFSAT + D A+ L+ P+ + +D E S L+ + ++ +R
Sbjct: 246 QTLLFSATLPRTLVDFAKAGLQ-DPVLVRLDVESKVSA--DLQSAFFSVKTAEREAALLC 302
Query: 275 XXK-------------------RNQKKK------------------VIVFLSSCNSVKYY 297
+ N KK+ +VF+ + + V+Y
Sbjct: 303 ILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYV 362
Query: 298 AELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFD 357
+ELL V +++G Q+ R N F + +LV TDVA+RG+DIP + +I +D
Sbjct: 363 SELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYD 422
Query: 358 PPDDPRDYIHRV 369
P P+ ++HRV
Sbjct: 423 FPPQPKVFVHRV 434
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 171 bits (434), Expect = 2e-42
Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 13/299 (4%)
Query: 78 AKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF 137
A+TG+GKTLAF IP ++ L + G +++TPTRELA QI L + +
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPY----GIYALILTPTRELAFQIAEQFTALGKPITLKC 245
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQN---TKGFIFKNLKALVIDEADRIL 194
+++GG + +A +L + ++++ATPGRL D +++ T +FK ++ V+DEADR+L
Sbjct: 246 SVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRML 305
Query: 195 EIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTAD 254
E + D+++ I + + +E RQ++L SAT T + L R+S R P F + D ST D
Sbjct: 306 EGQYNDQLKPIFESI-SEKRQTLLLSATITNNINMLHRVSTRK-PYFFEDKGKDDESTVD 363
Query: 255 GLEQGYVVCESDKRXXXXXXXXK----RNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLE 310
LEQ YVVC + K +N K V++F +C + A + + V
Sbjct: 364 RLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGS 423
Query: 311 LHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
LH + Q++R F + +++CTDVA+RGLDIP VD ++ + P P+ YIHRV
Sbjct: 424 LHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRV 482
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 171 bits (434), Expect = 2e-42
Identities = 109/336 (32%), Positives = 180/336 (53%), Gaps = 5/336 (1%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F L ++ + GF T +Q +T P L +D++ AKTGSGKTL +LIPA
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
+L + RNG V+++ PTRELA QI A + + GGA + + +L
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214
+G +I++ATPGRL D L+ K F+ + LV+DEADR+L++GFE ++R+I+ +P R
Sbjct: 556 RGADIVVATPGRLNDILE-MKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPR-R 613
Query: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGY-VVCESDKRXXXXX 273
Q+++++AT +V +A L P+ +N+ + + + Q VV + +K
Sbjct: 614 QTLMYTATWPKEVRKIAS-DLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQ 672
Query: 274 XXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERG 333
+ + KVI+F S+ + A + + +HG + Q +R +F + +
Sbjct: 673 ILRSQERGSKVIIFCSTKRLCDHLARSVGR-HFGAVVIHGDKTQGERDWVLNQFRSGKSC 731
Query: 334 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ TDVAARGLDI + +I +D P DY+HR+
Sbjct: 732 VLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI 767
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 171 bits (433), Expect = 2e-42
Identities = 120/374 (32%), Positives = 191/374 (50%), Gaps = 14/374 (3%)
Query: 36 FSDLKLSDGTMK-AIGKMGFTQMTAVQTRTIPPLLAGKD-VLGAAKTGSGKTLAFLIPAI 93
FS++ T K ++ + GF +MT VQ R + + ++ + AKTG+GKTLAFL+ A
Sbjct: 39 FSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAF 98
Query: 94 EMLHSLKFKPRNGTGVI---VITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
+ + LK KPR + I +++PTRELALQIF AR+L IGG ++ +E
Sbjct: 99 KDV--LKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREE 156
Query: 151 DKLMKG-VNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKIL 209
+ + +G N+LIATPGRL DHLQN + + + ++DEADR++++GF + + I + +
Sbjct: 157 NAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAV 216
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRX 269
+ + FSAT KV ++ R L IN + T + + Q + + DK
Sbjct: 217 TTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVF 276
Query: 270 XXXXXXXKR----NQKKKVIVFLSSCNSVKYYAELL-NYIDLPVLELHGKQKQQKRTNTF 324
++ N ++IVFL + + V + +L N++ +P LH +R +
Sbjct: 277 SSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSIT 336
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLM 384
F + GIL TDV ARG+D P + ++Q P + DYIHR+ L+
Sbjct: 337 ESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLI 396
Query: 385 FLTPTELGFLRYLK 398
L E FL +K
Sbjct: 397 LL-EQEKPFLNSIK 409
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 171 bits (433), Expect = 2e-42
Identities = 109/337 (32%), Positives = 180/337 (53%), Gaps = 6/337 (1%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI- 93
SF + +KA+ K +TQ T +Q + +P L+G+D++G AKTGSGKT AF+ P +
Sbjct: 270 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329
Query: 94 EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
++ + KP +G +++ PTREL+LQI+ A++ + ++ GG ++ +++ L
Sbjct: 330 HVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKAL 389
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
+G I++ATPGR++D + K + + LV+DEADR+ +GFE ++R I + D
Sbjct: 390 EQGAEIIVATPGRMID-MVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHV-RPD 447
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES-DKRXXXX 272
RQ ++FSAT ++E LAR + P+ I V + + + D + YV K
Sbjct: 448 RQCLMFSATFKKRIERLAR-DVLSDPVRI-VQGDLNEANQDITQSVYVFPNPLQKWNWLL 505
Query: 273 XXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAER 332
K + V++F++ + + L + L LHG Q R +F E
Sbjct: 506 CHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKEC 565
Query: 333 GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
ILV TDVAARGLDIP + ++ +D D + HR+
Sbjct: 566 DILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRI 602
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 171 bits (432), Expect = 3e-42
Identities = 131/398 (32%), Positives = 199/398 (49%), Gaps = 44/398 (11%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTG-----------EVEG--------SFSDLKLSDG 44
++R R+ D AE E V + TG E G +F+D+ L D
Sbjct: 102 DRREREVNPFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDA 161
Query: 45 TMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE--MLHSLKFK 102
I + + + T VQ IP LLA +D++ A+TGSGKT AF P I M +
Sbjct: 162 LNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVER 221
Query: 103 PRNGTGV----IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVN 158
PR V ++++PTRELA QI A++ + GG Q+ +L +G +
Sbjct: 222 PRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCD 281
Query: 159 ILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKIL---PNEDRQ 215
IL+ATPGRL D L+ + + ++ L +DEADR+L++GFE ++R+I++ + P RQ
Sbjct: 282 ILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQ 340
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXX 275
+MLFSAT ++++ LA +F+ V +ST ++ V ESDKR
Sbjct: 341 TMLFSATFPSQIQRLAA-DFMSNYIFLAV-GRVGSSTDLITQRVEFVQESDKRSHLMDLL 398
Query: 276 XKRNQKKKVIVFLSSCNSVKYYAELL-NYI---DLPVLELHGKQKQQKRTNTFFEFCNAE 331
+ + + + K A+ L N++ + P +HG + QQ+R F
Sbjct: 399 HAQRETQ---------DKTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGR 449
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
ILV TDVAARGLDIP V ++ FD P+D DY+HR+
Sbjct: 450 TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 487
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 170 bits (431), Expect = 4e-42
Identities = 110/354 (31%), Positives = 183/354 (51%), Gaps = 9/354 (2%)
Query: 18 ETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGA 77
+T +V+ + G F + LS K I K G+ T +Q +TIP +L GKDV+
Sbjct: 80 DTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAM 139
Query: 78 AKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF 137
A+TGSGKT FL+P E L + + G ++++PTRELALQ +EL +F
Sbjct: 140 ARTGSGKTACFLLPMFERLKT--HSAQTGARALILSPTRELALQTLKFTKELGKFTGLKT 197
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG 197
+++GG + L + +I+IATPGRL+ H+ ++++ +V DEADR+ E+G
Sbjct: 198 ALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMG 256
Query: 198 FEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLE 257
F +++++II LP Q++LFSAT + + AR L P+ I +D DT + L+
Sbjct: 257 FAEQLQEIIARLPG-GHQTVLFSATLPKLLVEFARAGLTE-PVLIRLD--VDTKLNEQLK 312
Query: 258 QGYVVCESDKRXXXXXXXXKR--NQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQ 315
+ + D + + + +VF+++ + +Y ELL + ++
Sbjct: 313 TSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSAL 372
Query: 316 KQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
R +F + L+ TD+AARGLDIP +D +I + P + ++HRV
Sbjct: 373 DPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRV 426
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 170 bits (431), Expect = 4e-42
Identities = 122/350 (34%), Positives = 188/350 (52%), Gaps = 18/350 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F+++ L + I + + + T VQ IP L AG+D++ A+TGSGKT AF P I
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 95 MLHSLKF--KPRNGTGV----IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQ 148
+ + +PR GV ++++PTRELA QI AR+ + GG Q
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQ 266
Query: 149 EADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKI 208
+ +L +GV+IL+ATPGRL D L+ + + + ++ L +DEADR+L++GFE ++R+I++
Sbjct: 267 QIRELERGVDILVATPGRLNDLLERGRVSL-QMVRFLALDEADRMLDMGFEPQIRKIVQQ 325
Query: 209 L---PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES 265
+ P RQ+MLFSAT +++ LA L +F+ V +ST +++ V +S
Sbjct: 326 MDMPPPGVRQTMLFSATFPREIQRLASDFLS-NYIFLAV-GRVGSSTDLIVQRVEFVHDS 383
Query: 266 DKRXXXXXXXXKR----NQKKKVI--VFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 319
DKR + NQ K+ + VF+ + L P +HG + QQ+
Sbjct: 384 DKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQE 443
Query: 320 RTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
R F ILV TDVAARGLDIP V ++ FD P+D DY+HR+
Sbjct: 444 REVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 493
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 169 bits (428), Expect = 9e-42
Identities = 119/354 (33%), Positives = 186/354 (51%), Gaps = 24/354 (6%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+FSD+ + + M I +T+ T VQ IP + +D++ A+TGSGKT AFL+P +
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query: 95 MLHS------LKFKPRNGTG--------VIVITPTRELALQIFGVARELMEFHSQTFGIV 140
+++ LK NG +V+ PTRELA+QI+ AR+ +V
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298
Query: 141 IGGANRRQEADKLMKGVNILIATPGRLLDHLQNTK-GFIFKNLKALVIDEADRILEIGFE 199
GGA+ Q+ L +G ++L+ATPGRL+D ++ K G F K LV+DEADR+L++GFE
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFE 356
Query: 200 DEMRQIIK---ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGL 256
++R+I++ + P R +M+FSAT +++ LAR L +I + + ST++ +
Sbjct: 357 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE---YIFLAVGRVGSTSENI 413
Query: 257 EQGYVVCES-DKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQ 315
Q V E DKR +VF+ + + L + +HG +
Sbjct: 414 TQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDR 473
Query: 316 KQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q+ R +F + + ILV T VAARGLDI V +I FD P D +Y+HR+
Sbjct: 474 SQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRI 527
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 169 bits (427), Expect = 1e-41
Identities = 118/374 (31%), Positives = 189/374 (49%), Gaps = 24/374 (6%)
Query: 17 AETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLG 76
A + V + T + SFSD + + + + G+T+ T +Q T+P + GKD+L
Sbjct: 281 ASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
Query: 77 AAKTGSGKTLAFLIPAIEML---HSLKFKPRNGT--GVIVITPTRELALQIFGVARELME 131
A+TGSGKT AFL+P + L L + G I++TPTRELA QI+ R+
Sbjct: 341 CAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSY 400
Query: 132 FHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEAD 191
V GG N ++MKG I++ T GR+ H + LV+DEAD
Sbjct: 401 QSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRV-KHFCEDGAIKLDKCRYLVLDEAD 459
Query: 192 RILE-IGFEDEMRQII--KILP-NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSE 247
R+++ +GF E+ QII K +P N+ RQ+M+FSAT + V++ AR LR I +D
Sbjct: 460 RMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITID-- 517
Query: 248 KDTSTADGLEQGYVVCESDKRXXXX---------XXXXKRNQK---KKVIVFLSSCNSVK 295
K + + Q + +C+ + ++N KK IVF++
Sbjct: 518 KIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMAD 577
Query: 296 YYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQ 355
A +++ +P + +HG ++Q++R+ F + + +L+ T V RGLDI VD +I
Sbjct: 578 TLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVIN 637
Query: 356 FDPPDDPRDYIHRV 369
+D P++ DYIHR+
Sbjct: 638 YDMPNNIDDYIHRI 651
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 168 bits (425), Expect = 2e-41
Identities = 119/381 (31%), Positives = 192/381 (50%), Gaps = 16/381 (4%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
S+S LS T+ I +G+ + T++Q + IP + +G+DV+G AKTGSGKT+AFL+P
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 95 MLHSLK-FKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
+ + K G I++TPTRELA+QIF + ++ + GGA + + L
Sbjct: 479 HIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADL 538
Query: 154 MKGVNILIATPGRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILPN 211
+G I++ TPGR++D L G + LV+DEADR+ ++GFE ++ +II +
Sbjct: 539 KRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI-R 597
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESD---KR 268
DRQ++LFSAT +E LAR L+ P+ I V + A +EQ V + R
Sbjct: 598 PDRQTVLFSATFPRAMEALARKVLKK-PVEITVGGR--SVVASEVEQIVEVRPEESKFSR 654
Query: 269 XXXXXXXXKRNQ-KKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEF 327
NQ + +VF+ S L +HG + Q R +T ++
Sbjct: 655 LLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDY 714
Query: 328 CNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLT 387
+L+ T V ARGLD+ ++ ++ +D P+ DY+HRV ++ F+T
Sbjct: 715 KAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRV-GRTGRAGHTGVAVTFIT 773
Query: 388 PTE----LGFLRYLKAAKVPL 404
P + + + LK +K P+
Sbjct: 774 PEQEKYAVDIAKALKMSKQPV 794
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 168 bits (425), Expect = 2e-41
Identities = 108/331 (32%), Positives = 180/331 (53%), Gaps = 16/331 (4%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI-EMLHSLKFKPR 104
+ ++ K G+ + T +QT+ IP +++G+D++G AKTGSGKT+AFL+P ++ +
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 105 NGTGVIVITPTRELALQIFGVARELMEFHSQTFGI----VIGGANRRQEADKLMKGVNIL 160
G +++TPTRELALQI +E +F S+T G+ V GG ++ +L +G I+
Sbjct: 444 EGPIAVIMTPTRELALQI---TKECKKF-SKTLGLRVVCVYGGTGISEQIAELKRGAEII 499
Query: 161 IATPGRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSML 218
+ TPGR++D L G + + + +V+DEADR+ ++GFE ++ +I+ + DRQ+++
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV-RPDRQTVM 558
Query: 219 FSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKR 278
FSAT +E LAR L P+ + V + +EQ +V E +K+
Sbjct: 559 FSATFPRAMEALARRILSK-PIEVQVGGR--SVVCSDVEQQVIVIEEEKKFLKLLELLGH 615
Query: 279 NQKK-KVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVC 337
Q+ VI+F+ + L P + LHG Q R + +F N +LV
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 338 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
T VAARGLD+ + ++ + P+ DY+HR
Sbjct: 676 TSVAARGLDVKHLILVVNYSCPNHYEDYVHR 706
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 168 bits (425), Expect = 2e-41
Identities = 116/365 (31%), Positives = 194/365 (52%), Gaps = 14/365 (3%)
Query: 10 AESEQDHAETETVVKD---TATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIP 66
A+ ++H E + D + E+ +F D+ L + ++ I GF + +A+Q R I
Sbjct: 6 ADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 65
Query: 67 PLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVA 126
P + G DV+ A++G+GKT F I ++ L ++FK T +V+ PTRELA QI V
Sbjct: 66 PCIKGYDVIAQAQSGTGKTATFAISILQQLE-IEFKE---TQALVLAPTRELAQQIQKVI 121
Query: 127 RELMEFHSQTFGIVIGGANRRQEADKLM-KGVNILIATPGRLLDHLQNTKGFIFKNLKAL 185
L ++ T IGG N R E KL + +I++ TPGR+ D L N + K +K
Sbjct: 122 LALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKWIKMF 180
Query: 186 VIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVD 245
V+DEAD +L GF+D++ +I + L N Q + SAT T V ++ + +R P+ I V
Sbjct: 181 VLDEADEMLSRGFKDQIYEIFQKL-NTSIQVVFASATMPTDVLEVTKKFMRD-PIRILV- 237
Query: 246 SEKDTSTADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYI 304
+K+ T +G++Q Y+ E ++ + + + ++FL++ V + E ++
Sbjct: 238 -KKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHAR 296
Query: 305 DLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRD 364
D V LHG Q++R EF + +L+ TD+ ARG+D+ V +I +D P + +
Sbjct: 297 DFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN 356
Query: 365 YIHRV 369
YIHR+
Sbjct: 357 YIHRI 361
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 167 bits (424), Expect = 3e-41
Identities = 103/327 (31%), Positives = 178/327 (53%), Gaps = 9/327 (2%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN 105
++ + GF+ T +Q ++ P + G+D++ AKTGSGKTL +LIP L ++ R
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM 229
Query: 106 GTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPG 165
G ++V++PTRELA QI A + + + GGA + + L +G +I++ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 166 RLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTT 225
RL D L+ + + + LV+DEADR+L++GFE ++R+I+K +P + RQ+++++AT
Sbjct: 290 RLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK-RQTLMYTATWPK 347
Query: 226 KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGY-VVCESDKRXXXXXXXXKRNQKKKV 284
V +A L P +N+ + + + Q VV +K+ + KV
Sbjct: 348 GVRKIA-ADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKV 406
Query: 285 IVFLSSCNSVKYYAELLNYI--DLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAA 342
I+F C++ + +L + +HG + Q +R N +F + +LV TDVAA
Sbjct: 407 IIF---CSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAA 463
Query: 343 RGLDIPAVDWIIQFDPPDDPRDYIHRV 369
RGLD+ + ++ +D P+ DY+HR+
Sbjct: 464 RGLDVKDIRAVVNYDFPNGVEDYVHRI 490
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 167 bits (423), Expect = 3e-41
Identities = 118/361 (32%), Positives = 190/361 (51%), Gaps = 19/361 (5%)
Query: 18 ETETVVKDTATTGEVEG----SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKD 73
E + + D+ + G G + +DL +S +KA+ G ++ +Q + P + G+D
Sbjct: 96 ENDGGIGDSESVGSSGGGDGLAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRD 155
Query: 74 VLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG----VIVITPTRELALQIFGVAREL 129
++G A+TG+GKTLAF IP I+ + +KF ++G G +V+ PTRELA Q V +E
Sbjct: 156 MIGRARTGTGKTLAFGIPIIDKI--IKFNAKHGRGKNPQCLVLAPTRELARQ---VEKEF 210
Query: 130 MEFHSQTFGIVI-GGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVID 188
E I + GG Q+ +L G+++ + TPGR++D L ++ +V+D
Sbjct: 211 RESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIID-LMKRGALNLSEVQFVVLD 269
Query: 189 EADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEK 248
EAD++L++GF +++ I++ LP + RQSM+FSAT + + L + L PL I++ +
Sbjct: 270 EADQMLQVGFAEDVEIILQKLPAK-RQSMMFSATMPSWIRSLTKKYLN-NPLTIDLVGDS 327
Query: 249 DTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKK-KVIVFLSSCNSVKYYAELLNYIDLP 307
D ADG+ + +S R K + K K IVF + A L
Sbjct: 328 DQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK-SYK 386
Query: 308 VLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIH 367
LHG Q +R T F + ILV TDVAARGLD+P VD +I ++ P++ ++H
Sbjct: 387 CEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVH 446
Query: 368 R 368
R
Sbjct: 447 R 447
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 167 bits (423), Expect = 3e-41
Identities = 117/350 (33%), Positives = 184/350 (52%), Gaps = 18/350 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F+++ L + I + + + T VQ IP LL G+D++ A+TGSGKT AF P I
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 95 --MLHSLKFKPRNGTGV----IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQ 148
M +PR V ++++PTRELA QI A++ + GG Q
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQ 279
Query: 149 EADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKI 208
+ +L +GV+IL+ATPGRL D L+ + + ++ L +DEADR+L++GFE ++R+I++
Sbjct: 280 QLRELERGVDILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQ 338
Query: 209 L---PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES 265
+ P RQ++LFSAT +++ LA L +F+ V +ST +++ V +S
Sbjct: 339 MDMPPRGVRQTLLFSATFPREIQRLAADFLA-NYIFLAV-GRVGSSTDLIVQRVEFVLDS 396
Query: 266 DKRXXXXXXXXKRNQ------KKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 319
DKR + + + +VF+ + L P +HG + QQ+
Sbjct: 397 DKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 456
Query: 320 RTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
R F + ILV TDVAARGLDIP V ++ FD P+D DY+HR+
Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 506
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 166 bits (421), Expect = 6e-41
Identities = 117/338 (34%), Positives = 182/338 (53%), Gaps = 8/338 (2%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI- 93
SF+ M+AI K + Q T +Q IP L+G+DVLG AKTGSGKT A+L PAI
Sbjct: 266 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIV 325
Query: 94 EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
++ K G +++ PTRELA+Q+F A++ + ++ GG ++ +++++L
Sbjct: 326 HIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNEL 385
Query: 154 M-KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNE 212
+G +++ TPGR++D L F LV DEADR+ ++GFE +++ I +
Sbjct: 386 QNEGAEMVVCTPGRIID-LVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHV-RP 443
Query: 213 DRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESD-KRXXX 271
DRQ ++FSAT KVE LAR +L P+ I V E + AD ++ +V+ D K
Sbjct: 444 DRQCLMFSATFKQKVERLARDAL-VDPVRI-VQGEVGEANADIEQKVFVMQNQDVKLHWL 501
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
+ KV++F++ + A+ L D ++ LHG Q +R +F +
Sbjct: 502 IRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKF-RKK 560
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
ILV TDVAARGLDI + +I FD D ++HR+
Sbjct: 561 SQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRI 598
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 166 bits (420), Expect = 7e-41
Identities = 116/416 (27%), Positives = 198/416 (46%), Gaps = 66/416 (15%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
D + ++ T + K T +GSF LS + I + GF Q T +Q +TIP +
Sbjct: 116 DEDDVNEYFSTNNLEK----TKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 171
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARE 128
L +D++G A+TGSGKT AF++P +E L S + G ++++P+RELA+Q F V ++
Sbjct: 172 LQSRDIVGMARTGSGKTAAFILPMVEKLKS--HSGKIGARAVILSPSRELAMQTFNVFKD 229
Query: 129 LMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVID 188
++ GG + ++ +M +++IATPGR L HL+ K+++ +V D
Sbjct: 230 FARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFL-HLKVEMNLDLKSVEYVVFD 288
Query: 189 EADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEK 248
EADR+ E+GF++++ +++ LP RQ++LFSAT + D + L P+ + +D+E
Sbjct: 289 EADRLFEMGFQEQLNELLASLPT-TRQTLLFSATLPNSLVDFVKAGL-VNPVLVRLDAE- 345
Query: 249 DTSTADGLEQGYV-------------------------------------VCESDKRXXX 271
T ++ LE ++ +SD
Sbjct: 346 -TKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDEN 404
Query: 272 XXXXXKRNQKKK------------------VIVFLSSCNSVKYYAELLNYIDLPVLELHG 313
+RN KK+ I+F+ + + V+Y ++LL + ++G
Sbjct: 405 DRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYG 464
Query: 314 KQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q R + F ILV TDVAARG+DIP + +I + P + ++HRV
Sbjct: 465 TLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRV 520
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 166 bits (419), Expect = 1e-40
Identities = 106/336 (31%), Positives = 185/336 (54%), Gaps = 16/336 (4%)
Query: 41 LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI-EMLHSL 99
+S M+ + ++GF + T +Q + IP +++G+D++G AKTGSGKTLAF++P +L
Sbjct: 517 VSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQP 576
Query: 100 KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGI----VIGGANRRQEADKLMK 155
+ +G I++ PTREL +QI +++ +F S++ G+ V GG ++ +L +
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQI---GKDIRKF-SKSLGLRPVCVYGGTGISEQIAELKR 632
Query: 156 GVNILIATPGRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
G I++ TPGR++D L G + + + +V+DEADR+ ++GFE ++ +II + D
Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNV-RPD 691
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
RQ+++FSAT ++E LAR L+ P+ + V + +EQ V+ D +
Sbjct: 692 RQTVMFSATFPRQMEALARRILKK-PIEVIVGGR--SVVCKEVEQHVVILNDDAKFFKLL 748
Query: 274 XXXKRNQKK-KVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAER 332
Q+ +IVF+ + L P + LHG Q R +T +F + +
Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808
Query: 333 GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
+L+ T VAARGLD+ + ++ +D P+ DY+HR
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR 844
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 165 bits (418), Expect = 1e-40
Identities = 111/360 (30%), Positives = 189/360 (51%), Gaps = 24/360 (6%)
Query: 30 GEVE--GSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLA 87
G++E F+ L+ ++ I G+TQ T VQ +IP + +G+D++ A+TGSGKT
Sbjct: 163 GDIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAG 222
Query: 88 FLIPAIEMLHS-------------LKFKPRNG-TGVIVITPTRELALQIFGVARELMEFH 133
FL P + + + ++PR +++ PTREL QI +R+
Sbjct: 223 FLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRS 282
Query: 134 SQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRI 193
V GGA+ R + ++ +G ++L ATPGRL+D + + N+K LV+DEADR+
Sbjct: 283 WVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGR-ISLANIKFLVLDEADRM 341
Query: 194 LEIGFEDEMRQIIK---ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDT 250
L++GFE ++R I++ + E+RQ+++FSAT ++ LAR L+ ++ + +
Sbjct: 342 LDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKD---YVFLSVGRVG 398
Query: 251 STADGLEQGYV-VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVL 309
ST++ + Q V V +S+KR + ++F+ + + L + P
Sbjct: 399 STSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPAT 458
Query: 310 ELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+HG + Q++R F + I+V T VA+RGLDIP V +I +D P D DY+HR+
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 165 bits (418), Expect = 1e-40
Identities = 110/340 (32%), Positives = 174/340 (50%), Gaps = 12/340 (3%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIP-AI 93
SF+ + M I K +TQ T +Q + +P L+G+D++G AKTGSGKT AF+ P I
Sbjct: 135 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 194
Query: 94 EMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL 153
++ + +P +G +++ PTREL QI + + ++ V GG + ++A L
Sbjct: 195 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 254
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
+G I++ TPGRL+DH++ K + + LV DEADR+ ++GFE ++R I + D
Sbjct: 255 QEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV-RPD 312
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVD----SEKDTSTADGLEQGYVVCESDKRX 269
RQ++LFSAT K+E LAR L + D +E T + L G K
Sbjct: 313 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSG-----PSKWN 367
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
+ V++F++ + + A L + LHG Q +R +F
Sbjct: 368 WLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKK 427
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ +LV TDVAARGLDIP++ +I +D D + HR+
Sbjct: 428 KDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRI 467
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 164 bits (416), Expect = 2e-40
Identities = 118/355 (33%), Positives = 181/355 (50%), Gaps = 43/355 (12%)
Query: 49 IGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPR---- 104
I K+G+ + T +Q + IP L +D++G A+TGSGKTLAFLIP + + SL R
Sbjct: 409 IDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDV 468
Query: 105 -NGTGVIVITPTRELALQIFGVARELMEFHSQTFGI----VIGGANRRQEADKLMKGVNI 159
G I++ PTRELA QI E +F Q GI V+GG +R ++ +L G I
Sbjct: 469 DQGPYAIIMAPTRELAQQI---EEETTKF-GQPLGIRTVVVVGGLSREEQGFRLRLGCEI 524
Query: 160 LIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP--------- 210
+IATPGRL+D L+N + + +V+DEADR++++GFE ++++I++ +P
Sbjct: 525 VIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 583
Query: 211 ---------------NEDRQSMLFSATQTTKVEDLARISL-RPGPLFINVDSEKDTSTAD 254
+ RQ+++F+AT VE LAR L RP ++I + T
Sbjct: 584 EAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQ 643
Query: 255 GLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGK 314
+ Y++ E+DKR R VI+F++ A+ L + LHG
Sbjct: 644 IV---YMMGENDKR-KKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGG 699
Query: 315 QKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ Q++R + + ILV TDVA RG+DI V +I +D DY HR+
Sbjct: 700 KGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRI 754
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 164 bits (415), Expect = 3e-40
Identities = 106/345 (30%), Positives = 183/345 (52%), Gaps = 16/345 (4%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI- 93
+F D+K + + + G Q T +Q + +P +LAG+D++G A TGSGKTL F++P I
Sbjct: 147 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
Query: 94 -EMLHSLKFKPRNGTGVI--VITPTRELALQIFGVARELME------FHSQTFGIVIGGA 144
+ + G G I ++ P+RELA Q + V + + + + IGG
Sbjct: 207 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 266
Query: 145 NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQ 204
+ R + + + +GV+I++ATPGRL D L K + L +DEADR++++GFED++R+
Sbjct: 267 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MSLDACRYLTLDEADRLVDLGFEDDIRE 325
Query: 205 IIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCE 264
+ ++ RQ++LFSAT TK++ AR +L P+ +NV + D +++ V +
Sbjct: 326 VFDHFKSQ-RQTLLFSATMPTKIQIFARSALVK-PVTVNV-GRAGAANLDVIQEVEYVKQ 382
Query: 265 SDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
K K + V++F + V E L + + +HG + Q+ R
Sbjct: 383 EAKIVYLLECLQKTSPP--VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAI 440
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F ++ +LV TDVA++GLD P + +I +D P + +Y+HR+
Sbjct: 441 SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRI 485
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 164 bits (414), Expect = 4e-40
Identities = 117/348 (33%), Positives = 180/348 (51%), Gaps = 18/348 (5%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
FS L + M+ I FT+ T VQ +IP + G+D++ A+TGSGKT FL P
Sbjct: 156 FSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTE 215
Query: 96 LH----------SLKFKPRNG-TGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGA 144
L + F R G +V+ PTRELA QIF AR+ +V GGA
Sbjct: 216 LFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGA 275
Query: 145 NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQ 204
+ ++ +G ++L+ATPGRL D L+ K + N+K LV+DEADR+L++GFE ++R
Sbjct: 276 PIGNQMREVDRGCDLLVATPGRLNDLLERGKVSL-ANIKYLVLDEADRMLDMGFEPQIRH 334
Query: 205 IIKI--LPN-EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV 261
I++ +P+ E+RQ+++FSAT ++ LAR L +F++V + ST++ + Q +
Sbjct: 335 IVEECDMPSVENRQTLMFSATFPVDIQHLARDFL-DNYIFLSVG--RVGSTSENITQRIL 391
Query: 262 VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRT 321
+ + K ++F+ + + L + +HG + Q +R
Sbjct: 392 YVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERE 451
Query: 322 NTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F ILV T VAARGLDIP V +I +D P D DY+HR+
Sbjct: 452 RALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRI 499
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 164 bits (414), Expect = 4e-40
Identities = 115/389 (29%), Positives = 190/389 (48%), Gaps = 34/389 (8%)
Query: 43 DGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFK 102
D +A+ ++G+ + T +Q + IP L +DV+G A+TGSGKT AFL+P + + SL
Sbjct: 310 DEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKM 369
Query: 103 PRN-----GTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGV 157
R G I++ PTRELA QI + + VIGGA+R + KL GV
Sbjct: 370 ERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGV 429
Query: 158 NILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP------- 210
++IATPGRLLD L+N + + +++DEADR+L++GFE +++++++ +P
Sbjct: 430 EVVIATPGRLLDVLEN-RYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKD 488
Query: 211 -----NED------------RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTA 253
NE+ RQ+++F+AT ++ +E LAR LR P +++ S
Sbjct: 489 TDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLR-RPAVVHIGSA--GKPT 545
Query: 254 DGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHG 313
+ +EQ + D++ + + +I+F++ ++ L + LHG
Sbjct: 546 ERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHG 605
Query: 314 KQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXX 373
+ Q +R ILV TDVA RG+D+ V ++ +D DY HR+
Sbjct: 606 GKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRI-GRT 664
Query: 374 XXXXXXXXSLMFLTPTELGFLRYLKAAKV 402
++ FLTP + LK V
Sbjct: 665 GRAGKHGKAITFLTPDDTAVYFDLKQVLV 693
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 164 bits (414), Expect = 4e-40
Identities = 115/389 (29%), Positives = 190/389 (48%), Gaps = 34/389 (8%)
Query: 43 DGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFK 102
D +A+ ++G+ + T +Q + IP L +DV+G A+TGSGKT AFL+P + + SL
Sbjct: 310 DEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKM 369
Query: 103 PRN-----GTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGV 157
R G I++ PTRELA QI + + VIGGA+R + KL GV
Sbjct: 370 ERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGV 429
Query: 158 NILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP------- 210
++IATPGRLLD L+N + + +++DEADR+L++GFE +++++++ +P
Sbjct: 430 EVVIATPGRLLDVLEN-RYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKD 488
Query: 211 -----NED------------RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTA 253
NE+ RQ+++F+AT ++ +E LAR LR P +++ S
Sbjct: 489 TDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLR-RPAVVHIGSA--GKPT 545
Query: 254 DGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHG 313
+ +EQ + D++ + + +I+F++ ++ L + LHG
Sbjct: 546 ERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHG 605
Query: 314 KQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXX 373
+ Q +R ILV TDVA RG+D+ V ++ +D DY HR+
Sbjct: 606 GKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRI-GRT 664
Query: 374 XXXXXXXXSLMFLTPTELGFLRYLKAAKV 402
++ FLTP + LK V
Sbjct: 665 GRAGKHGKAITFLTPDDTAVYFDLKQVLV 693
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 163 bits (413), Expect = 5e-40
Identities = 101/340 (29%), Positives = 180/340 (52%), Gaps = 11/340 (3%)
Query: 31 EVEG-SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFL 89
E EG + L L +K I +G+ + VQ +IP +L GK++L +K G+GKT +++
Sbjct: 104 ETEGIGWESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYI 163
Query: 90 IPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQE 149
+P + M++S + + I++ P RELALQI + + E V+GG + + +
Sbjct: 164 VPMLNMINSSELSIQG----IILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDD 219
Query: 150 ADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKIL 209
++ GV++++ TPGR++D ++ G + K + LV DEAD++L++ F + + +++ +L
Sbjct: 220 IIRVSNGVHVMVGTPGRIVDLVEKRVGTLSKRV-ILVFDEADKLLDVTFGETVTKLLDLL 278
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRX 269
P E +Q +L+SAT V R ++ PL IN+ E G++Q Y + ++
Sbjct: 279 PRE-KQMLLYSATFPYFVTGFIRRYMK-NPLCINLMKEL---APVGVKQFYTYVKPSEKL 333
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
R + ++F +S +V+ A + + LP +H K Q+ R F F
Sbjct: 334 LCLKSLLLRLSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLK 393
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ ILV TD+ RG+D P +++I FD P Y+HR+
Sbjct: 394 GKCKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRI 433
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 163 bits (412), Expect = 6e-40
Identities = 108/353 (30%), Positives = 191/353 (53%), Gaps = 12/353 (3%)
Query: 18 ETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGA 77
E E V++ +T EV +F D+ L + ++ I GF + +A+Q R I P + G+DV+
Sbjct: 2 EPEGVIE--STWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQ 59
Query: 78 AKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF 137
A++G+GKT F I ++ + + + + +++ PTRELA QI V L E+
Sbjct: 60 AQSGTGKTATFSIAILQQIDTSIRECQ----ALILAPTRELATQIQRVVMALGEYMKVHS 115
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG 197
IGG N R++A L G ++++ TPGR+ D + N K + +K V+DEAD +L G
Sbjct: 116 HACIGGTNVREDARILESGCHVVVGTPGRVYDMI-NRKVLRTQYIKLFVLDEADEMLSRG 174
Query: 198 FEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLE 257
F+D+++ + K+LP D Q +L SAT V +++R +R P+ I V +K+ T +G++
Sbjct: 175 FKDQIQDVFKMLP-PDVQVILLSATMPPDVLEVSRCFMRD-PVSILV--KKEELTLEGIK 230
Query: 258 QGYV-VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQK 316
Q YV V + + + + ++F ++ V + ++ + V +HG +
Sbjct: 231 QFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDME 290
Query: 317 QQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q+ R +F + +L+ TD+ ARG+D+ V +I +D P + +YIHR+
Sbjct: 291 QRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRI 343
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 162 bits (411), Expect = 8e-40
Identities = 108/359 (30%), Positives = 189/359 (52%), Gaps = 28/359 (7%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
++ + L +K + K+ + + +++Q IP LL KD++G A+TGSGKT AF+IP I
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 95 MLHSL----KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
+ L + G +V+ PTRELA QI + E V+GG +++
Sbjct: 310 AISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS 369
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
++ +G +I++ATPGRLLD L+ + F+ +V+DEADR+L++GFED++ +I+ LP
Sbjct: 370 FQMSQGAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
Query: 211 NED------------------RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTST 252
+ + RQ+++FSAT +V +LA+ L P+ + + +
Sbjct: 429 SSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIE-PVMLTIGNIGQA-- 485
Query: 253 ADGLEQGY-VVCESDKRXXXXXXXXKRNQ-KKKVIVFLSSCNSVKYYAELLNYIDLPVLE 310
D +EQ ++ + K+ + N+ +I+F++ +++ A+ LN I +
Sbjct: 486 VDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVT 545
Query: 311 LHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
LHG + Q++R + N ILV TD+A RG+DIP V ++ ++ DY HR+
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRI 604
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 162 bits (409), Expect = 1e-39
Identities = 111/348 (31%), Positives = 178/348 (50%), Gaps = 11/348 (3%)
Query: 23 VKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGS 82
+K + T F D L + I +MG+ + + +Q +IP L+G+D+L AK G+
Sbjct: 74 IKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 133
Query: 83 GKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELME-FHSQTFGIVI 141
GK+ A+LIP +E L K + +VI PTRELALQ+ + ++ +
Sbjct: 134 GKSGAYLIPLLERLDLKK----DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATT 189
Query: 142 GGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDE 201
GG N R + +L V+++IATPGR+LD ++ + +++ +V+DEAD++L F
Sbjct: 190 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV-DHVQMIVLDEADKLLSQDFVQI 248
Query: 202 MRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV 261
M II LP ++RQ +L+SAT V+ L+ P IN+ E T G+ Q Y
Sbjct: 249 MEDIILTLP-KNRQILLYSATFPLSVQKFMNSHLQK-PYEINLMEEL---TLKGVTQYYA 303
Query: 262 VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRT 321
++ R Q + I+F +S V+ A+ ++ + +H K +Q+ R
Sbjct: 304 YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRN 363
Query: 322 NTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F +F N LVCTD+ RG+DI AV+ +I FD P Y+HR+
Sbjct: 364 RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRI 411
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 162 bits (409), Expect = 1e-39
Identities = 105/340 (30%), Positives = 179/340 (51%), Gaps = 10/340 (2%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
+V SF D++L + ++ I GF + +A+Q R I P GKDV+ A++G+GKT F
Sbjct: 26 QVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATF-- 83
Query: 91 PAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
++ +L + + + +V+ PTRELA QI V L E+ + IGG + R +
Sbjct: 84 -SVSILQRIDHEDPH-VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQ 141
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
KL G+++++ TPGR+ D + N +K V+DEAD +L GF+D++ ++ + +P
Sbjct: 142 RKLEAGIHVVVGTPGRVGDMI-NRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP 200
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-RX 269
+D Q +L SAT ++V D+ +R P+ I V +KD T +G+ Q Y+ + D+ +
Sbjct: 201 -QDVQVVLLSATMPSEVLDVTNRFMR-NPIRILV--KKDELTLEGIRQFYINVQKDEWKF 256
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
+ ++F ++ V E + V LHG Q +R EF +
Sbjct: 257 DCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRS 316
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ TD+ ARG+D+ V +I +D P + +YIHR+
Sbjct: 317 GSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRI 356
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 162 bits (409), Expect = 1e-39
Identities = 99/318 (31%), Positives = 171/318 (53%), Gaps = 5/318 (1%)
Query: 53 GFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVI 112
GF+ + +Q ++ P + +D++ AKTGSGKTL +LIP L + R G ++V+
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVL 307
Query: 113 TPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQ 172
+PTRELA QI A + + + + GGA + + ++ +GV+I++ATPGRL D L+
Sbjct: 308 SPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILE 367
Query: 173 NTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLAR 232
K + LV+DEADR+L++GFE ++R+I+ +P + RQ+++++AT +V +A
Sbjct: 368 -MKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK-RQTLMYTATWPKEVRKIA- 424
Query: 233 ISLRPGPLFINVDSEKDTSTADGLEQGY-VVCESDKRXXXXXXXXKRNQKKKVIVFLSSC 291
L P +N+ + + + Q V+ +K + K+I+F S+
Sbjct: 425 ADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTK 484
Query: 292 NSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVD 351
A L +HG + Q +R + +F + +LV TDVAARGLD+ +
Sbjct: 485 RMCDQLARNLTR-TFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIR 543
Query: 352 WIIQFDPPDDPRDYIHRV 369
++ +D P+ DY+HR+
Sbjct: 544 VVVNYDFPNGVEDYVHRI 561
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 161 bits (408), Expect = 2e-39
Identities = 121/401 (30%), Positives = 197/401 (48%), Gaps = 45/401 (11%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
S+ D L ++ I K G+ + T +Q + IP L +D++G A+TGSGKT AFLIP +
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 95 MLHSLKFKPR-----NGTGVIVITPTRELALQIFGVARELMEFHSQTFGI----VIGGAN 145
+ +L R G I++ PTRELA QI E ++F + GI VIGG +
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQI---EEETIKF-GKPLGIRTVAVIGGIS 507
Query: 146 RRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQI 205
R + +L G I+IATPGRL+D L+N + + +V+DEADR++++GFE ++++I
Sbjct: 508 REDQGFRLRMGCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKI 566
Query: 206 IKILP-------------------------NEDRQSMLFSATQTTKVEDLARISL-RPGP 239
++ +P ++ RQ+++F+AT VE LAR L RP
Sbjct: 567 LEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAV 626
Query: 240 LFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAE 299
++I + ++ +++ ES+KR ++ +I+F++ A+
Sbjct: 627 VYIGSAGKPHERVE---QKVFLMSESEKR-KKLLAILEQGFDPPIIIFVNQKKGCDVLAK 682
Query: 300 LLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPP 359
L + LHG + Q++R + ILV TDVA RG+DI V ++ +D
Sbjct: 683 SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 742
Query: 360 DDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAA 400
+ DYIHR+ ++ FLT + LK A
Sbjct: 743 KNIEDYIHRI-GRTGRAGKSGVAITFLTKEDSAVFYELKQA 782
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 161 bits (408), Expect = 2e-39
Identities = 121/401 (30%), Positives = 197/401 (48%), Gaps = 45/401 (11%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
S+ D L ++ I K G+ + T +Q + IP L +D++G A+TGSGKT AFLIP +
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 95 MLHSLKFKPR-----NGTGVIVITPTRELALQIFGVARELMEFHSQTFGI----VIGGAN 145
+ +L R G I++ PTRELA QI E ++F + GI VIGG +
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQI---EEETIKF-GKPLGIRTVAVIGGIS 507
Query: 146 RRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQI 205
R + +L G I+IATPGRL+D L+N + + +V+DEADR++++GFE ++++I
Sbjct: 508 REDQGFRLRMGCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFEPDVQKI 566
Query: 206 IKILP-------------------------NEDRQSMLFSATQTTKVEDLARISL-RPGP 239
++ +P ++ RQ+++F+AT VE LAR L RP
Sbjct: 567 LEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAV 626
Query: 240 LFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAE 299
++I + ++ +++ ES+KR ++ +I+F++ A+
Sbjct: 627 VYIGSAGKPHERVE---QKVFLMSESEKR-KKLLAILEQGFDPPIIIFVNQKKGCDVLAK 682
Query: 300 LLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPP 359
L + LHG + Q++R + ILV TDVA RG+DI V ++ +D
Sbjct: 683 SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 742
Query: 360 DDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAA 400
+ DYIHR+ ++ FLT + LK A
Sbjct: 743 KNIEDYIHRI-GRTGRAGKSGVAITFLTKEDSAVFYELKQA 782
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 160 bits (406), Expect = 3e-39
Identities = 125/382 (32%), Positives = 194/382 (50%), Gaps = 31/382 (8%)
Query: 50 GKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSL---KFKPRNG 106
G + + T +Q T P LLAG+DV+G A+TGSGKT+AF IPA++ L+ L K PR
Sbjct: 181 GLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPR-- 238
Query: 107 TGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGR 166
V+V++PTRELA+Q + L++ + +V GGA + ++A + K +++I TPGR
Sbjct: 239 --VLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGR 295
Query: 167 LLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP----NEDRQSMLFSAT 222
LLD L N + LV+DEADR+L+ GFE ++R II P N RQ++ FSAT
Sbjct: 296 LLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
Query: 223 QTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKR---- 278
V LA L+ P+ I + S+ + + + + Q + + + R
Sbjct: 355 WPESVRALAATFLK-DPVKITIGSD-ELAASQNITQIVEILDDPRSKERMLDNLLRKHLS 412
Query: 279 --NQKKKVIVF-LSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL 335
+ K+++F L + + L + V+ +HG Q R +F + + +L
Sbjct: 413 SGGKDDKILIFVLYKKEAARVEGTLARKYN--VVGIHGDMSQGARLQALNDFKSGKCPVL 470
Query: 336 VCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELG--- 392
V TDVAARGLDIP V +I P DY+HR+ ++ F TP +
Sbjct: 471 VATDVAARGLDIPKVQLVINVTFPLTIEDYVHRI-GRTGRANTKGTAITFFTPQDKSHAG 529
Query: 393 -FLRYLKAAK--VPLNEYEFPT 411
+ L+ AK +P ++F T
Sbjct: 530 ELVNVLRQAKQDIPEGLFKFGT 551
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 160 bits (405), Expect = 4e-39
Identities = 105/326 (32%), Positives = 175/326 (53%), Gaps = 6/326 (1%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHS--LKFKP 103
+K+I ++G + T +Q++ P +L G D++ A+TG+GKTL++L+P L S + +
Sbjct: 234 LKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 293
Query: 104 RNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIAT 163
RNG G++V+TPTRELAL + + + + GG NR + + + KGV+I+IAT
Sbjct: 294 RNGPGMLVLTPTRELALHVEAECSKY-SYKGLKSICIYGGRNRNGQIEDISKGVDIIIAT 352
Query: 164 PGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQ 223
PGRL D LQ +++ LVIDEAD++L++ FE ++R+I+ + DRQ+++ SAT
Sbjct: 353 PGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV-RPDRQTVMTSATW 410
Query: 224 TTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKK 283
V LA +S P+ + V + + + V E +KR + K
Sbjct: 411 PDTVRQLA-LSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDK 469
Query: 284 VIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAAR 343
VI+F+S + + N + LHG +Q + +F + IL+ TD+ +R
Sbjct: 470 VIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSR 529
Query: 344 GLDIPAVDWIIQFDPPDDPRDYIHRV 369
GLD+ V + +D P + Y+HRV
Sbjct: 530 GLDLNDVTHVYNYDFPRNIDVYVHRV 555
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 160 bits (405), Expect = 4e-39
Identities = 119/372 (31%), Positives = 184/372 (48%), Gaps = 68/372 (18%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGK---------- 84
+F +L LS ++A +G+ + T +Q + IP +D+ +A TGSGK
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQVQFIPQ--EWRDLCASAITGSGKVSTRLMVLCN 225
Query: 85 ----------TLAFLIPAIEMLHSLKFKPRN--GTGVIVITPTRELALQIFGVARELMEF 132
T AF +P +E L F+P+ T V+++TPTRELA+QI + + L +F
Sbjct: 226 TEILFRYLTNTAAFALPTLERL---LFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF 282
Query: 133 HSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADR 192
G+++GG + R++ L +I++ATPGR++DHL+N+ +L L++DEADR
Sbjct: 283 TDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 342
Query: 193 ILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTST 252
+L+ GF E+ +++++ P RQ+MLFSAT T +V++L ++SL PL ++ D
Sbjct: 343 LLQTGFATEITELVRLCPKR-RQTMLFSATMTEEVKELVKLSLNK-PLRLSAD--PSARR 398
Query: 253 ADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAE-----LLNYIDLP 307
GL + Y+ F+ SC S A L L
Sbjct: 399 PPGLTEEYL----------------------REFFVPSCASGTKQAAHRLKILFGLAGLK 436
Query: 308 VLELHGKQKQQKR-------TNTFFE---FCNAERGILVCTDVAARGLDIPAVDWIIQFD 357
ELHG Q +R T+ F F E L+ TDVAARGLDI V +I +
Sbjct: 437 AAELHGNLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYA 496
Query: 358 PPDDPRDYIHRV 369
P + Y+HRV
Sbjct: 497 CPREIDSYVHRV 508
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 159 bits (403), Expect = 7e-39
Identities = 108/356 (30%), Positives = 179/356 (49%), Gaps = 24/356 (6%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+FS+ L + K + G+T+ T +Q T+P + G D++ A+TGSGKT AFL+P +
Sbjct: 553 TFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMA 612
Query: 95 MLHSLKFKPRNGTG-----VIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQE 149
L G G I++TPTREL QI+ R+ V GG
Sbjct: 613 RLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYN 672
Query: 150 ADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKI 208
++ KG I++ T GR+ H + V+DEADR+++ +GF ++ I+
Sbjct: 673 KGQIEKGATIIVGTVGRI-KHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNY 731
Query: 209 --LPN-EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES 265
+P E+RQ+++FSAT V++ AR L+ G + + +D K + + Q + C+
Sbjct: 732 ESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAID--KIGAANKCVLQEFEKCDR 789
Query: 266 DKRXXXX---------XXXXKRNQK---KKVIVFLSSCNSVKYYAELLNYIDLPVLELHG 313
++ ++N + KK IVF+S A +L+ +P + +HG
Sbjct: 790 SEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHG 849
Query: 314 KQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
++Q++R+ +F N + +L+ T VA RGLDI VD +I +D PD+ DYIHR+
Sbjct: 850 AREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRI 905
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 159 bits (402), Expect = 9e-39
Identities = 111/352 (31%), Positives = 173/352 (48%), Gaps = 16/352 (4%)
Query: 18 ETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGA 77
+TE V K T F D L + I + GF + + +Q +IP L+G+D+L
Sbjct: 34 KTEDVTKTRGT------EFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILAR 87
Query: 78 AKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF 137
AK G+GKT AF+IP++E + + K K + +++ PTRELALQ V + L + +
Sbjct: 88 AKNGTGKTAAFVIPSLEKVDTKKSKIQT----LILVPTRELALQTSQVCKTLGKHMNVKV 143
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG 197
+ GG R + +L V+I++ TPGR+LD L F V+DEAD++L
Sbjct: 144 MVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLSPE 202
Query: 198 FEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLE 257
F + Q++ P ++RQ L+SAT V++ L P IN+ D T G+
Sbjct: 203 FTPIIEQLLSYFP-KNRQISLYSATFPLIVKNFMDKHLNK-PYEINL---MDELTLRGVT 257
Query: 258 QGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQ 317
Q Y + ++ + Q + I+F +S N V+ A+ + + H K Q
Sbjct: 258 QYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQ 317
Query: 318 QKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
R F F N LVC+D+ RG+DI AV+ +I FD P + Y+HR+
Sbjct: 318 SHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 369
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 159 bits (401), Expect = 1e-38
Identities = 104/345 (30%), Positives = 178/345 (51%), Gaps = 16/345 (4%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIP--- 91
+F D+K ++ + G T +Q + +P +L+G+D++G A TGSGKTL F++P
Sbjct: 98 NFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
Query: 92 -AIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELME------FHSQTFGIVIGGA 144
A++ + G +VI P+RELA Q + V + + + + IGG
Sbjct: 158 LALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGV 217
Query: 145 NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQ 204
+ R + D + KGV+I++ATPGRL D L K + L +DEADR++++GFED++R
Sbjct: 218 DMRSQLDVVKKGVHIVVATPGRLKDILAKKK-MSLDACRLLTLDEADRLVDLGFEDDIRH 276
Query: 205 IIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCE 264
+ ++ RQ++LFSAT K++ A +L P+ +NV + D +++ V +
Sbjct: 277 VFDHFKSQ-RQTLLFSATMPAKIQIFATSALVK-PVTVNV-GRAGAANLDVIQEVEYVKQ 333
Query: 265 SDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
K K V++F + V E L + + +HG + Q+ R
Sbjct: 334 EAKIVYLLECLQKTTPP--VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAI 391
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F ++ +LV TDVA++GLD P + +I +D P + +Y+HR+
Sbjct: 392 SLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRI 436
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 158 bits (400), Expect = 2e-38
Identities = 102/330 (30%), Positives = 169/330 (50%), Gaps = 18/330 (5%)
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG----- 108
FT+ T VQ ++P + G+D++ A+TGSGKT FL P + P+ +
Sbjct: 162 FTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQ 221
Query: 109 ------VIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIA 162
+++ PTRELA QIF A++ +V GG+ + ++ +G ++L+A
Sbjct: 222 RKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVA 281
Query: 163 TPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIK---ILPNEDRQSMLF 219
TPGRL D L+ K N+K LV+DEADR+L++GFE ++R I++ + P +RQ+++F
Sbjct: 282 TPGRLNDLLERGK-ISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMF 340
Query: 220 SATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRN 279
SAT ++ LAR L +I + + ST++ + Q + E+ + +
Sbjct: 341 SATFPADIQHLARDFLSD---YIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSAS 397
Query: 280 QKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTD 339
++F+ + + L + +HG + Q +R F + +LV T
Sbjct: 398 TDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATA 457
Query: 340 VAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
VAARGLDIP V +I +D P D DY+HR+
Sbjct: 458 VAARGLDIPNVTHVINYDLPSDVDDYVHRI 487
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 158 bits (400), Expect = 2e-38
Identities = 104/359 (28%), Positives = 190/359 (51%), Gaps = 31/359 (8%)
Query: 36 FSDLKLSDGTMKAIG-KMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+S L LS TM I K+ F +T +Q++ +P +++G+DV+G +KTGSGKT+++L+P +
Sbjct: 257 WSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLR 316
Query: 95 MLHSLKFKPRNGTGV--IVITPTRELALQIFGVARELMEFHSQTFGIVI-GGANRRQEAD 151
+ + + ++ TG +++ PTRELALQI + E + + GG+ +++
Sbjct: 317 QVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQIT 376
Query: 152 KLMKGVNILIATPGRLLDHLQNTKGFIF--KNLKALVIDEADRILEIGFEDEMRQIIKIL 209
L +G I++ATPGR +D L G + K + +V+DEADR+ ++GFE ++ QI+K +
Sbjct: 377 DLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV 436
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESD--- 266
D+Q +LFSAT K+ A + + P+ I ++S+ + + ++Q + +C S+
Sbjct: 437 -RPDKQCVLFSATFPNKLRSFA-VRVLHSPISITINSKGMVN--ENVKQKFRICHSEDEK 492
Query: 267 ---------KRXXXXXXXXKRNQKK---------KVIVFLSSCNSVKYYAELLNYIDLPV 308
+R N + K I+F+SS N + ++ L +
Sbjct: 493 FDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVT 552
Query: 309 LELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIH 367
+H + Q+R +F + IL+CT+V +RGL++P V +I ++ Y+H
Sbjct: 553 CAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVH 611
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 158 bits (400), Expect = 2e-38
Identities = 114/388 (29%), Positives = 188/388 (48%), Gaps = 31/388 (7%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+++ LS + ++ K GF++ +Q+ IP G D++G A TGSGKTLAF IP +E
Sbjct: 123 AWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE 182
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
H L+ +V+ PTRELA QI + + + GG +++ L
Sbjct: 183 --HCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 155 KGVNILIATPGRLLDHL-QNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNE- 212
K ++++ATPGRL + +N FK +K LV+DEADR+L+ +E+ ++++IL N
Sbjct: 241 KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPM 300
Query: 213 --DRQSMLFSATQTTKVEDLARISLRPG---------------------PLFINVDSEKD 249
RQ+ +FSAT ++ + +++ P F+ D+
Sbjct: 301 HTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFL--DANPQ 358
Query: 250 TSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVL 309
++ A + +G + C ++ R K +VF + +K LN + +P
Sbjct: 359 SAVASRVLEGLIECAPAEKDLYLYYLIMR-YPGKTMVFANGIEDIKRITPFLNELKVPSY 417
Query: 310 ELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
LH + Q+KR + +F N +G+LVCTDVAARG+DIP+V +I + P Y+HR
Sbjct: 418 PLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHR- 476
Query: 370 XXXXXXXXXXXXSLMFLTPTELGFLRYL 397
S++ P EL L+ L
Sbjct: 477 SGRTARANEDGVSILMCGPKELSQLKRL 504
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 158 bits (400), Expect = 2e-38
Identities = 113/330 (34%), Positives = 170/330 (51%), Gaps = 13/330 (3%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLH----SLKF 101
++ I KMGF++ + +Q++ P LL G D++G A+TG+GKTLAFL+P M+H S
Sbjct: 295 LEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPG--MIHTEYQSTPR 352
Query: 102 KPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILI 161
R G V+V+ PTRELALQI ++ F V GG NR + L +G I+I
Sbjct: 353 GTRGGANVLVLAPTRELALQIEMEVKK-YSFRGMKAVCVYGGGNRNMQISDLERGAEIII 411
Query: 162 ATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSA 221
TPGRL D L + LV+DEADR+L++GFE ++R+++ + DRQ+++ SA
Sbjct: 412 CTPGRLND-LIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDI-RPDRQTIMTSA 469
Query: 222 TQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQK 281
T V LA+ S P+ + V S D + ++Q + E D +N
Sbjct: 470 TWPPGVRRLAQ-SYMKNPIQVCVGS-LDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMS 527
Query: 282 K--KVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTD 339
K+I+F + L +HG + Q R + + ILV TD
Sbjct: 528 STDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATD 587
Query: 340 VAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
VA+RGLDI + +I +D P + +Y+HRV
Sbjct: 588 VASRGLDIEDITHVINYDFPHNIEEYVHRV 617
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 158 bits (399), Expect = 2e-38
Identities = 108/341 (31%), Positives = 175/341 (50%), Gaps = 12/341 (3%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
EV +F D+ L ++ I GF + +A+Q R I P+L +DVL A++G+GKT F I
Sbjct: 16 EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSI 75
Query: 91 PAIEMLH-SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQE 149
++ + SLK +++ PTRELA QI V L + + IGG R +
Sbjct: 76 SVLQKIDTSLK-----QCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDD 130
Query: 150 ADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKIL 209
L GV++++ TPGR+ D +Q + ++ V+DEAD +L GF+D++ I ++L
Sbjct: 131 MAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLL 189
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-R 268
P Q +L SAT V ++ +R P+ I V +KD T +G++Q YV E ++ +
Sbjct: 190 P-PTAQVVLLSATMPQDVLEVTTKFMRD-PIRILV--KKDELTLEGIKQFYVAVEKEEWK 245
Query: 269 XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 328
+ + ++F ++ V + E L D V +HG Q +R EF
Sbjct: 246 LDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFR 305
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
IL+ TD+ ARG+D+ V +I +D P + +YIHR+
Sbjct: 306 TGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRI 346
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 157 bits (398), Expect = 3e-38
Identities = 113/347 (32%), Positives = 175/347 (49%), Gaps = 15/347 (4%)
Query: 26 TATTGEVEG-SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGK 84
TA + +G F D L + I + G+ + + +Q +I L G+D+L AK G+GK
Sbjct: 34 TADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGK 93
Query: 85 TLAFLIPAIEMLHSLKFKPR-NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGG 143
T A+ IP IE K +P +VI PTRELALQ + EL + + GG
Sbjct: 94 TGAYCIPVIE-----KIQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGG 148
Query: 144 ANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFEDEM 202
+ R + +L V+++IATPGR+LD ++ KG ++ K LV+DEAD++L F+ +
Sbjct: 149 TDLRDDIMRLNGTVHLVIATPGRILDLME--KGVAKMEHCKTLVLDEADKLLSQDFQGIL 206
Query: 203 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVV 262
++I LP E RQ ML+SAT V + + P IN+ E T G+ Q Y
Sbjct: 207 DRLINFLPKE-RQVMLYSATFPNTVTSFMQKHMHK-PYEINLMEEL---TLLGVTQYYAF 261
Query: 263 CESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTN 322
+ ++ ++ Q + I+F +S V+ A+ + I +H K Q R
Sbjct: 262 VQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNR 321
Query: 323 TFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F +F LVC+D+ RG+DI AV+ +I FD P + Y+HR+
Sbjct: 322 VFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRI 368
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 156 bits (394), Expect = 8e-38
Identities = 104/355 (29%), Positives = 179/355 (50%), Gaps = 24/355 (6%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
S+ + KL+ +KA+ + G+ + + +Q IP L +DV+G A+TGSGKT AF++P +
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 95 MLHSL----KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
+ L + G +V+ PTRELA QI + + ++GG + ++
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 433
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
K+ +G I+IATPGRL+D L+ + +V+DEADR++++GFE ++ ++ +P
Sbjct: 434 LKITQGCEIVIATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMP 492
Query: 211 NED----------------RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTAD 254
+ + R + +FSAT VE LAR LR P+ + + + T+ D
Sbjct: 493 SSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLR-NPVVVTIGTAGKTT--D 549
Query: 255 GLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGK 314
+ Q ++ + ++ +K IVF+++ + A+ L+ V LHG
Sbjct: 550 LISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGG 609
Query: 315 QKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ Q++R + F +LV TDV RG+DIP V +I +D P Y HR+
Sbjct: 610 KSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRI 664
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 155 bits (393), Expect = 1e-37
Identities = 107/370 (28%), Positives = 191/370 (50%), Gaps = 18/370 (4%)
Query: 1 MAGNKRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAV 60
MAG K +D + + +E V V +F + L + ++ I GF + +A+
Sbjct: 1 MAGKKAEKDDMATVEFESSEEV--------NVIPTFDKMGLREDLLRGIYAYGFEKPSAI 52
Query: 61 QTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELAL 120
Q R +P +L +DV+ A++G+GKT F +I +L SL + R T ++++PTRELA+
Sbjct: 53 QQRAVPAILKARDVIAQAQSGTGKTATF---SISVLQSLDTQVRE-TQALILSPTRELAV 108
Query: 121 QIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFK 180
QI V L ++ + IGG N ++ KL G +++ TPGR+ D ++ + +
Sbjct: 109 QIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RNLRTR 167
Query: 181 NLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPL 240
+K LV+DEAD +L GF++++ I + LP Q +L SAT ++ ++ P+
Sbjct: 168 AIKLLVLDEADEMLNKGFKEQLYDIYRYLP-PGAQVVLLSATLPHEILEMTS-KFMTDPI 225
Query: 241 FINVDSEKDTSTADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAE 299
I V ++D T +G++Q +V + ++ + + ++F ++ V + +
Sbjct: 226 RILV--KRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTD 283
Query: 300 LLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPP 359
+ + V +HG +Q+ R EF +L+ TDV ARGLD+P V +I +D P
Sbjct: 284 KMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLP 343
Query: 360 DDPRDYIHRV 369
++ YIHR+
Sbjct: 344 NNRELYIHRI 353
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 155 bits (393), Expect = 1e-37
Identities = 112/346 (32%), Positives = 167/346 (47%), Gaps = 23/346 (6%)
Query: 26 TATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKT 85
TAT G F D L + I + GF + + +Q +IP L G+D+L AK G+GKT
Sbjct: 126 TATKGN---EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT 182
Query: 86 LAFLIPAIEMLHSLKFKPRNGT--GVIVITPTRELALQIFGVARELMEFHSQTFGIVIGG 143
AF IP +E K N G V+ T + V +EL + + GG
Sbjct: 183 AAFCIPVLE-----KIDQDNNVIQGNCVLDHTSQ-------VCKELGKHLKIQVMVTTGG 230
Query: 144 ANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMR 203
+ + + +L + V++L+ TPGR+LD L + K+ LV+DEAD++L F+ +
Sbjct: 231 TSLKDDIMRLYQPVHLLVGTPGRILD-LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVE 289
Query: 204 QIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVC 263
+I LP E RQ ++FSAT V+D L P IN+ D T G+ Q Y
Sbjct: 290 HLISFLP-ESRQILMFSATFPVTVKDFKDRFLT-NPYVINL---MDELTLKGITQFYAFV 344
Query: 264 ESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNT 323
E ++ + Q + I+F +S N V+ A+ + + +H K Q R
Sbjct: 345 EERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV 404
Query: 324 FFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F +F N LVCTD+ RG+DI AV+ +I FD P + Y+HRV
Sbjct: 405 FHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRV 450
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 155 bits (392), Expect = 1e-37
Identities = 112/382 (29%), Positives = 183/382 (47%), Gaps = 31/382 (8%)
Query: 9 DAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPL 68
DAE + +E +K T F++ L++ K + G+++ T +Q +P +
Sbjct: 323 DAEVKLTSSEKTVGIKPCKT-------FAEANLTETMQKNVAHAGYSKTTPIQQYALPLV 375
Query: 69 LAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG-----VIVITPTRELALQIF 123
G D++ A+TGSGKT AFL+P + L G G I++TPTRELA QI+
Sbjct: 376 HQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIY 435
Query: 124 GVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLK 183
R+ V GG ++ KG I++ T GR+ H +
Sbjct: 436 NEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRI-KHFCEEGTIKLDKCR 494
Query: 184 ALVIDEADRILE-IGFEDEMRQIIKI--LPN-EDRQSMLFSATQTTKVEDLARISLRPGP 239
V+DEADR+++ +GF ++ I+ +P E+RQ+++FSAT V++ AR LR
Sbjct: 495 FFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENY 554
Query: 240 LFINVDSEKDTSTADGLEQGYVVCESDKRX------------XXXXXXXKRNQKKKVIVF 287
+ I +D K + + Q + CE ++ KK +VF
Sbjct: 555 VMIAID--KIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVF 612
Query: 288 LSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDI 347
+S A +L+ +P + +HG ++Q++R+ +F N + +L+ T VA RGLDI
Sbjct: 613 VSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDI 672
Query: 348 PAVDWIIQFDPPDDPRDYIHRV 369
VD +I +D PD+ DYIHR+
Sbjct: 673 KGVDHVINYDMPDNIDDYIHRI 694
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 155 bits (391), Expect = 2e-37
Identities = 101/351 (28%), Positives = 182/351 (51%), Gaps = 10/351 (2%)
Query: 20 ETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAK 79
E V T+ SF ++ L + ++ I G+ +AVQ+R I + G+DV+ A+
Sbjct: 7 ENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQ 66
Query: 80 TGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGI 139
+G+GKT F +I +L S+ R+ T ++++PTRELA+QI V L + +
Sbjct: 67 SGTGKTATF---SIGILQSIDLSVRD-TQALILSPTRELAVQIQNVVLALGDHMNVQCHA 122
Query: 140 VIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFE 199
IGG + + KL G +++ TPGR+ D ++ + +N+K L++DEAD +L GF+
Sbjct: 123 CIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFK 181
Query: 200 DEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQG 259
+++ I + LP Q ++ SAT V ++ P+ I V ++D T +GL+Q
Sbjct: 182 EQIYDIYRYLP-PGTQVVVVSATLPQDVLEMTN-KFTTNPVRILV--KRDELTLEGLKQY 237
Query: 260 YVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQ 318
++ E ++ + + ++F +S V + E + + V +HG+ Q+
Sbjct: 238 FIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQK 297
Query: 319 KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+R +F +L+CTD+ ARG+D+ V +I +D P + +YIHR+
Sbjct: 298 ERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRI 348
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 154 bits (390), Expect = 2e-37
Identities = 104/346 (30%), Positives = 186/346 (53%), Gaps = 10/346 (2%)
Query: 25 DTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGK 84
+T+ EV +F+ + L + ++ I GF + +A+Q R+I P++ G+DV+ A++G+GK
Sbjct: 17 ETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGK 76
Query: 85 TLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGA 144
T F +I +L SL R T V+ ++PTRELA+QI V L + + + IGG
Sbjct: 77 TATF---SISILQSLDTTLRE-TQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGT 132
Query: 145 NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQ 204
N ++ KL G +I+ TPGR+ D ++ + + +K LV+DEAD +L GF++++
Sbjct: 133 NLGEDIRKLDYGQHIVSGTPGRVFDMIKR-RVLRTRAIKMLVLDEADEMLNKGFKEQIYD 191
Query: 205 IIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCE 264
+ + LP Q +L SAT ++ ++ P+ I V ++D T +G++Q +V E
Sbjct: 192 VYRYLPPAT-QVVLISATLPHEILEMTS-KFMTDPIRILV--KRDELTLEGIKQFFVAVE 247
Query: 265 SDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNT 323
++ + + ++F ++ V + E + + V +HG Q++R
Sbjct: 248 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEI 307
Query: 324 FFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
EF + +L+ TDV ARG+D+ V +I +D P++ YIHR+
Sbjct: 308 MKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 353
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 154 bits (389), Expect = 3e-37
Identities = 108/364 (29%), Positives = 187/364 (50%), Gaps = 12/364 (3%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F D++L + ++ + GF + +A+Q R I P++ G DVL A++G+GKT F I A++
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
+ + P+ +++ PTRELALQI V L IGG + ++A+ L +
Sbjct: 84 IDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 138
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
I++ TPGR+ D++Q + F +K ++DEAD +L GF++++ QI +LP Q
Sbjct: 139 DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-PTTQ 196
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV-VCESDKRXXXXXX 274
+L SAT V ++ +R P+ I V +KD T +G++Q YV V E + +
Sbjct: 197 VVLLSATMPNDVLEVTTKFMR-NPVRILV--KKDELTLEGIKQFYVNVEEEEYKYECLTD 253
Query: 275 XXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 334
+ ++F ++ V+ L V ++ QQ+R EF + I
Sbjct: 254 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 313
Query: 335 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFL 394
L+ TD+ ARG+D+ V +I +D P + +YIHR+ ++ F+T ++G +
Sbjct: 314 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRI-GRGGRFGRKGVAINFVTNEDVGAM 372
Query: 395 RYLK 398
R L+
Sbjct: 373 RELE 376
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 154 bits (389), Expect = 3e-37
Identities = 108/364 (29%), Positives = 187/364 (50%), Gaps = 12/364 (3%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F D++L + ++ + GF + +A+Q R I P++ G DVL A++G+GKT F I A++
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
+ + P+ +++ PTRELALQI V L IGG + ++A+ L +
Sbjct: 84 IDTSVKAPQ----ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 138
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQ 215
I++ TPGR+ D++Q + F +K ++DEAD +L GF++++ QI +LP Q
Sbjct: 139 DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-PTTQ 196
Query: 216 SMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV-VCESDKRXXXXXX 274
+L SAT V ++ +R P+ I V +KD T +G++Q YV V E + +
Sbjct: 197 VVLLSATMPNDVLEVTTKFMR-NPVRILV--KKDELTLEGIKQFYVNVEEEEYKYECLTD 253
Query: 275 XXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 334
+ ++F ++ V+ L V ++ QQ+R EF + I
Sbjct: 254 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 313
Query: 335 LVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFL 394
L+ TD+ ARG+D+ V +I +D P + +YIHR+ ++ F+T ++G +
Sbjct: 314 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRI-GRGGRFGRKGVAINFVTNEDVGAM 372
Query: 395 RYLK 398
R L+
Sbjct: 373 RELE 376
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 154 bits (389), Expect = 3e-37
Identities = 100/329 (30%), Positives = 168/329 (50%), Gaps = 9/329 (2%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI-EMLHSLKFKPR 104
M + K +++ T++Q + IP +++G+DV+G AKTGSGKTLAFL+P +L + +
Sbjct: 316 MNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEG 375
Query: 105 NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATP 164
+G +++ PTRELA+Q + A + + GG ++ L +G I++ TP
Sbjct: 376 DGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTP 435
Query: 165 GRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSAT 222
GR++D L G + + + LV+DEADR+ + GFE ++ +++ + D+Q++LFSAT
Sbjct: 436 GRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNI-RPDKQTVLFSAT 494
Query: 223 QTTKVEDLARISL-RPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQK 281
+E LAR L +P + + K +D + + E K ++
Sbjct: 495 FPRHMEALARKVLDKPVEILV---GGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEE 551
Query: 282 KKVIVFLSSCNSVKYYAELLNYIDL-PVLELHGKQKQQKRTNTFFEFCNAERGILVCTDV 340
IVF+ + L V LHG Q R ++ +F +LV T V
Sbjct: 552 GSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSV 611
Query: 341 AARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
AARGLD+ + ++ +D P+ DY+HRV
Sbjct: 612 AARGLDVKNLILVVNYDCPNHYEDYVHRV 640
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 154 bits (389), Expect = 3e-37
Identities = 100/329 (30%), Positives = 168/329 (50%), Gaps = 9/329 (2%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAI-EMLHSLKFKPR 104
M + K +++ T++Q + IP +++G+DV+G AKTGSGKTLAFL+P +L + +
Sbjct: 316 MNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEG 375
Query: 105 NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATP 164
+G +++ PTRELA+Q + A + + GG ++ L +G I++ TP
Sbjct: 376 DGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTP 435
Query: 165 GRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSAT 222
GR++D L G + + + LV+DEADR+ + GFE ++ +++ + D+Q++LFSAT
Sbjct: 436 GRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNI-RPDKQTVLFSAT 494
Query: 223 QTTKVEDLARISL-RPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQK 281
+E LAR L +P + + K +D + + E K ++
Sbjct: 495 FPRHMEALARKVLDKPVEILV---GGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEE 551
Query: 282 KKVIVFLSSCNSVKYYAELLNYIDL-PVLELHGKQKQQKRTNTFFEFCNAERGILVCTDV 340
IVF+ + L V LHG Q R ++ +F +LV T V
Sbjct: 552 GSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSV 611
Query: 341 AARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
AARGLD+ + ++ +D P+ DY+HRV
Sbjct: 612 AARGLDVKNLILVVNYDCPNHYEDYVHRV 640
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 154 bits (389), Expect = 3e-37
Identities = 102/340 (30%), Positives = 175/340 (51%), Gaps = 10/340 (2%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
+V SF + L + ++ I GF + +A+Q R I P G DV+ A++G+GKT F
Sbjct: 36 DVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCS 95
Query: 91 PAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
++ L + + +V+ PTRELA QI V R L ++ +GG + R++
Sbjct: 96 GVLQQLDFSLIQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
L GV++++ TPGR+ D L+ + N+K V+DEAD +L GF+D++ I ++LP
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLP 210
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-RX 269
+ Q +FSAT + ++ R P+ I V ++D T +G++Q YV E ++ +
Sbjct: 211 PKI-QVGVFSATMPPEALEITR-KFMSKPVRILV--KRDELTLEGIKQFYVNVEKEEWKL 266
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
+ + ++F+++ V + + + D V HG Q R EF +
Sbjct: 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 326
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ TD+ ARG+D+ V +I FD P P +Y+HR+
Sbjct: 327 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRI 366
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 154 bits (389), Expect = 3e-37
Identities = 108/346 (31%), Positives = 171/346 (49%), Gaps = 10/346 (2%)
Query: 24 KDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSG 83
K T T F + L + I + G+ + + +Q IP L+GKDVL AK G+G
Sbjct: 47 KTTDVTDTRGNEFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTG 106
Query: 84 KTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGG 143
KT A+ IP +E + K + +V+ PTRELALQ + EL + + GG
Sbjct: 107 KTGAYCIPVLEQIDPTK----DYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGG 162
Query: 144 ANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMR 203
+ + ++ + V ++IATPGR+LD L + K + + LV+DEAD++L + F+ +
Sbjct: 163 TILKDDILRIYQKVQLIIATPGRILD-LMDKKVADMSHCRILVLDEADKLLSLDFQGMLD 221
Query: 204 QIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVC 263
+I LP +D Q +LFSAT V++ LR P IN+ E T G+ Q Y
Sbjct: 222 HVILKLP-KDPQILLFSATFPLTVKNFMEKHLRE-PYEINLMEEL---TLKGVTQYYAFV 276
Query: 264 ESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNT 323
+ ++ + Q + I+F +S V+ A+ + + +H K Q R
Sbjct: 277 QERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRV 336
Query: 324 FFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F +F LVC+D+ RG+D+ AV+ +I FD P Y+HR+
Sbjct: 337 FHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRI 382
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 154 bits (388), Expect = 4e-37
Identities = 104/338 (30%), Positives = 181/338 (52%), Gaps = 13/338 (3%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F D L ++AI GF + VQ IP + G DVL AK+G GKT F++ ++
Sbjct: 46 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105
Query: 96 LHSLKFKPRNG-TGVIVITPTRELALQIFGVARELMEFH-SQTFGIVIGGANRRQEADKL 153
+ +P NG V+V+ TRELA QI ++ S + GG + +++ + L
Sbjct: 106 I-----EPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL 160
Query: 154 MKGV-NILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPN 211
K ++++ TPGR+L ++N + F KN+K V+DE D++LE + ++++I ++ P+
Sbjct: 161 KKNCPHVVVGTPGRILALVRN-RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 219
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXX 271
E +Q M+FSAT + + + R ++ P+ + VD E T GL+Q YV + ++
Sbjct: 220 E-KQCMMFSATLSKDIRPVCRKFMQD-PMEVFVDDETKL-TLHGLQQYYVKLKDSEKNRK 276
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
+ +VI+F+ S A+LL + P + +H Q++R + + +F + +
Sbjct: 277 LFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQ 336
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
R ILV T++ RG+DI V+ + +D P+D Y+HRV
Sbjct: 337 RRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 374
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 152 bits (385), Expect = 9e-37
Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 10/340 (2%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
EV SF + L + ++ I GF + +A+Q R I P G DV+ A++G+GKT F
Sbjct: 36 EVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCS 95
Query: 91 PAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
++ L + + +V+ PTRELA QI V R L ++ +GG + R++
Sbjct: 96 GVLQQLDYALLQCQ----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
L GV++++ TPGR+ D L+ + +K V+DEAD +L GF+D++ I ++LP
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLRR-QSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLP 210
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES-DKRX 269
+ Q +FSAT + ++ R P+ I V ++D T +G++Q YV E D +
Sbjct: 211 PKI-QVGVFSATMPPEALEITR-KFMSKPVRILV--KRDELTLEGIKQFYVNVEKEDWKL 266
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
+ + ++F+++ V + + + D V HG Q R EF +
Sbjct: 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 326
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ TD+ ARG+D+ V +I FD P P +Y+HR+
Sbjct: 327 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRI 366
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 152 bits (383), Expect = 1e-36
Identities = 103/358 (28%), Positives = 188/358 (51%), Gaps = 13/358 (3%)
Query: 13 EQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGK 72
E+D + E +T+ +V +F + L + ++ I GF + +A+Q R I ++ G+
Sbjct: 20 EEDMTKVEF---ETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR 76
Query: 73 DVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEF 132
DV+ +++G+GKT F +I +L L + R T +++ PTRELA+QI L ++
Sbjct: 77 DVIAQSQSGTGKTATF---SISVLQCLDIQVRE-TQALILAPTRELAVQIQKGLLALGDY 132
Query: 133 HSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADR 192
+ IGG N ++ KL G +++ TPGR+ D ++ + + +K LV+DEAD
Sbjct: 133 MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADE 191
Query: 193 ILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTST 252
+L GF++++ + + LP Q +L SAT ++ ++ P+ I V ++D T
Sbjct: 192 MLNKGFKEQIYDVYRYLPPAT-QVVLISATLPHEILEMTN-KFMTDPIRILV--KRDELT 247
Query: 253 ADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLEL 311
+G++Q +V E ++ + + ++F ++ V + E + + V +
Sbjct: 248 LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM 307
Query: 312 HGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
HG Q++R + EF + +L+ TDV ARGLD+P V II +D P++ YIHR+
Sbjct: 308 HGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 150 bits (379), Expect = 4e-36
Identities = 108/341 (31%), Positives = 183/341 (52%), Gaps = 24/341 (7%)
Query: 49 IGKMGFTQMTAVQTRTIPPLLAGK---DVLGAAKTGSGKTLAFLIPA-IEMLHSLKFKPR 104
I ++ F T +Q TIP + K D LG A TGSGKTLAF+IP I+M S P
Sbjct: 189 IQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPS 248
Query: 105 ----NGTGVIVITPTRELALQIFGVARELMEFHSQTFGI------VIGGANRRQEADKLM 154
+G +++ PTREL QI +++ + S+ ++GG + + + L
Sbjct: 249 LKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLS 308
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQII-KILPNED 213
+G +IL+ATPGRL+D L+N + K ++ LV+DEAD+++++GFED++ I+ K+ N D
Sbjct: 309 EGCDILVATPGRLIDSLENHL-LVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINAD 367
Query: 214 ----RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRX 269
RQ+++F+AT T +E +A ++ P++ + E T + ++Q ++D+
Sbjct: 368 SAVNRQTLMFTATMTPVIEKIAAGYMQK-PVYATIGVE--TGSEPLIQQVVEYADNDEDK 424
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNY-IDLPVLELHGKQKQQKRTNTFFEFC 328
+I+F++ + + AE ++ V LHG + Q++R ++ F
Sbjct: 425 FKKLKPIVAKYDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFR 484
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ I++ T+VAARGLDIP V ++ F DYIHR+
Sbjct: 485 TNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRI 525
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 150 bits (379), Expect = 4e-36
Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 51/340 (15%)
Query: 41 LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLK 100
L+ + + K+ + + +Q + +P +++G+D +G AKTGSGKTL F++P ML +K
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLP---MLRHIK 459
Query: 101 FKP--RNGTGVI--VITPTRELALQIFGVARELMEFHSQTFGI----VIGGANRRQEADK 152
+P G G I V+ PTREL QI+ R+ S+ GI V GG+ Q+ +
Sbjct: 460 DQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKF----SKALGIICVPVYGGSGVAQQISE 515
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
L +G I++ TPGR++D L + G I + + LV+DEADR+ ++GFE ++ +I++ +
Sbjct: 516 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 574
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXX 270
DRQ++LFSAT +VE LAR L P+ I V + D + + ES++
Sbjct: 575 RPDRQTVLFSATFPRQVETLARKVLNK-PVEIQVGG-RSVVNKDITQLVEIRPESERFSR 632
Query: 271 XXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF-FEFCN 329
+ +K KV+VF+ S Q+K + F + CN
Sbjct: 633 LLELLGEWYEKGKVLVFVRS--------------------------QEKSISDFKSDVCN 666
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ T VAARGLD+ ++ ++ FD P+ DY+HRV
Sbjct: 667 ----LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV 702
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 150 bits (379), Expect = 4e-36
Identities = 110/380 (28%), Positives = 190/380 (49%), Gaps = 19/380 (5%)
Query: 1 MAGNKRVRDAESEQDHAETETVVKDTATTGEVEGS--------FSDLKLSDGTMKAIGKM 52
MA N + D E E+ ET V A +V+G+ F D L ++AI
Sbjct: 1 MADNDDLLDYEDEEQ-TETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDC 59
Query: 53 GFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVI 112
GF + VQ IP + G D+L AK+G GKT F++ ++ L N V+V+
Sbjct: 60 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEP---SDNNTCHVLVM 116
Query: 113 TPTRELALQIFGVARELMEFHSQT-FGIVIGGANRRQEADKLMKGV-NILIATPGRLLDH 170
TRELA QI ++ + GG +++ + L G +I++ TPGR+L
Sbjct: 117 CHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILAL 176
Query: 171 LQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPNEDRQSMLFSATQTTKVED 229
++N K K LK V+DE D++LE + ++++I + P+ +Q M+FSAT + +
Sbjct: 177 IRNKK-LNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPH-GKQVMMFSATLSKDIRP 234
Query: 230 LARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLS 289
+ + ++ P+ + VD E T GL+Q YV + +++ + +V++F+
Sbjct: 235 VCKKFMQD-PMEVYVDDEAKL-TLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVK 292
Query: 290 SCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPA 349
S ++LL + P + +H Q++R N + +F + ++ ILV T++ RG+DI
Sbjct: 293 SVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIER 352
Query: 350 VDWIIQFDPPDDPRDYIHRV 369
V+ + +D P+D Y+HRV
Sbjct: 353 VNIVFNYDMPEDSDTYLHRV 372
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 150 bits (378), Expect = 6e-36
Identities = 118/379 (31%), Positives = 186/379 (48%), Gaps = 27/379 (7%)
Query: 9 DAESEQDHAETE-TVVKDTATTGEV---EGS--------FSDLKLSDGTMKAIGKMGFTQ 56
+ E QD E T DTA GE +GS F D L ++AI GF
Sbjct: 14 EEELVQDQPAQEITPAADTAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEH 73
Query: 57 MTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNG-TGVIVITPT 115
+ VQ IP + G DVL AK+G GKT F++ ++ + +P +G V+V+ T
Sbjct: 74 PSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI-----EPVDGEVSVLVLCHT 128
Query: 116 RELALQIFG-VARELMEFHSQTFGIVIGGANRRQEADKLM---KGVNILIATPGRLLDHL 171
RELA QI AR + GG N +Q+ + K +I++ATPGRL + L
Sbjct: 129 RELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL-NAL 187
Query: 172 QNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDL 230
K ++K V+DE D++LE + +++++ + P + +Q M+FSAT + ++ +
Sbjct: 188 VREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQ-KQVMMFSATLSNEIRPI 246
Query: 231 ARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSS 290
+ ++ PL I VD E T GL+Q YV E + + +V++F+ S
Sbjct: 247 CKKFMQ-NPLEIYVDDETKL-TLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKS 304
Query: 291 CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAV 350
+ LL + P + +HG Q++R + F + ++ I V TDV RG+DI V
Sbjct: 305 VSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERV 364
Query: 351 DWIIQFDPPDDPRDYIHRV 369
+ +I +D PD P Y+HRV
Sbjct: 365 NIVINYDMPDSPDSYLHRV 383
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 150 bits (378), Expect = 6e-36
Identities = 101/340 (29%), Positives = 176/340 (51%), Gaps = 10/340 (2%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
EV SF ++L ++ I GF + +A+Q R I P G DV+ A++G+GKT F
Sbjct: 38 EVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCS 97
Query: 91 PAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
++ L + + +V+ PTRELA QI V R L ++ +GG + R++
Sbjct: 98 GVLQQLDISLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQ 153
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
L GV++++ TPGR+ D L+ + +K V+DEAD +L GF+D++ I ++LP
Sbjct: 154 RVLQSGVHVVVGTPGRVFDLLRR-QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLP 212
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-RX 269
++ Q +FSAT + ++ R + P+ I V ++D T +G++Q YV + ++ +
Sbjct: 213 SKV-QVGVFSATMPPEALEITRKFMNK-PVRILV--KRDELTLEGIKQFYVNVDKEEWKL 268
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
+ + ++F+++ V + + + D V HG Q R EF +
Sbjct: 269 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 328
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ TD+ ARG+D+ V +I FD P P +Y+HR+
Sbjct: 329 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRI 368
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 148 bits (373), Expect = 2e-35
Identities = 107/324 (33%), Positives = 169/324 (52%), Gaps = 15/324 (4%)
Query: 51 KMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVI 110
K T+ T +Q IP + + +D+L A TGSGKT+A+L P +L L+ G I
Sbjct: 63 KQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP---ILQKLQLHVPGGYRAI 119
Query: 111 VITPTRELALQIFGVARELMEFHSQTFGIVIGGANRR--QEADKLMKGVNILIATPGRLL 168
++ PTREL QI+ A +L F + I + +N + ++A KL + ++ I TP RL+
Sbjct: 120 IVAPTRELCEQIYRQAEKL-SFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLV 178
Query: 169 DHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVE 228
+Q G F+ ++ V+DEADR+ E GF ++ I+ + + LFSAT ++VE
Sbjct: 179 QAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVE 236
Query: 229 DLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESD--KRXXXXXXXXKRNQKKKVIV 286
+LA++ + P+ I V KD +T D ++Q + SD K K +V++
Sbjct: 237 ELAKV-VTVDPIRIIVGL-KDAAT-DSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVI 293
Query: 287 FLSSCNSVK-YYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGL 345
F+ K Y ELL + ++ V +HG+ Q KR +F E +L+ TD+ ARG+
Sbjct: 294 FVQDIERAKALYTELL-FDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGI 352
Query: 346 DIPAVDWIIQFDPPDDPRDYIHRV 369
D V +I FD P YIHR+
Sbjct: 353 DFHGVKMVINFDFPQSVHSYIHRI 376
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 147 bits (371), Expect = 4e-35
Identities = 114/379 (30%), Positives = 180/379 (47%), Gaps = 21/379 (5%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVEGS--------FSDLKLSDGTMKAIGKMGFT 55
+K E+ + TE + G+ +GS F D L +AI GF
Sbjct: 24 SKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFE 83
Query: 56 QMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPT 115
+ VQ TIP + G DVL AK+G GKT F++ ++ L + + V+VI
Sbjct: 84 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGE----VAVVVICNA 139
Query: 116 RELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVN----ILIATPGRLLDHL 171
RELA QI ++ V G + +L+K + I++ATPGRL L
Sbjct: 140 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRL-KAL 198
Query: 172 QNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDL 230
K ++K VIDE D++LE + ++++I + P D+Q M+FSAT + ++ +
Sbjct: 199 VREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPR-DKQVMMFSATLSQEIRPI 257
Query: 231 ARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSS 290
R L+ PL I VD E T GL+Q Y+ E ++ + +VI+F+ S
Sbjct: 258 CRRFLQ-NPLEIFVDDEAKL-TLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKS 315
Query: 291 CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAV 350
+LLN + P + +HG KQ++R + F + E+ I V TDV RG+DI +
Sbjct: 316 TTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERI 375
Query: 351 DWIIQFDPPDDPRDYIHRV 369
+ I +D ++ Y+HRV
Sbjct: 376 NLAINYDLTNEADQYLHRV 394
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 146 bits (369), Expect = 6e-35
Identities = 102/388 (26%), Positives = 197/388 (50%), Gaps = 14/388 (3%)
Query: 15 DHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDV 74
D E + + T+ +V +F + L D ++ I GF +++Q+R I +++GKDV
Sbjct: 4 DREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDV 63
Query: 75 LGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHS 134
+ A++G+GKT F I ++ + K ++++PTRELA QI V + L ++ +
Sbjct: 64 IAQAQSGTGKTATFTIGLLQAIDLRK----KDLQALILSPTRELASQIGQVVKNLGDYMN 119
Query: 135 QTFGIVIGGANRRQEADKLMK-GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRI 193
+ GG + + K+ K G + TPGR+LD ++ +N++ LV+DEAD +
Sbjct: 120 VNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADEL 178
Query: 194 LE--IGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTS 251
L +GF+ ++ I LP ++ Q ++ SAT + ++ R + P+ I V ++D
Sbjct: 179 LSETLGFKQQIYDIFAKLP-KNCQVVVVSATMNKDILEVTRKFMND-PVKILV--KRDEI 234
Query: 252 TADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLE 310
+ +G++Q V + ++ + + ++F ++ V + ++ L + V+
Sbjct: 235 SLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVS 294
Query: 311 LHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVX 370
+HG KQ++R +F +L+ TDV ARG+D+ V +I +D P+ +YIHR+
Sbjct: 295 MHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRI- 353
Query: 371 XXXXXXXXXXXSLMFLTPTELGFLRYLK 398
++ F+T +L LR ++
Sbjct: 354 GRSGRFGRKGVAINFITKADLAKLREIE 381
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 146 bits (369), Expect = 6e-35
Identities = 102/338 (30%), Positives = 178/338 (52%), Gaps = 13/338 (3%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F D L ++AI GF + VQ IP + G DVL AK+G GKT F++ ++
Sbjct: 47 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106
Query: 96 LHSLKFKPRNG-TGVIVITPTRELALQIFGVARELMEFHSQT-FGIVIGGANRRQEADKL 153
L +P G V+V+ TRELA QI ++ + GG + +++ + L
Sbjct: 107 L-----EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 161
Query: 154 MKGV-NILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPN 211
K +I++ TPGR+L +N K K++K ++DE D++LE + ++++I ++ P+
Sbjct: 162 KKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 220
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXX 271
E +Q M+FSAT + ++ + R ++ P+ I VD E T GL+Q YV + +++
Sbjct: 221 E-KQVMMFSATLSKEIRPVCRKFMQD-PMEIFVDDETKL-TLHGLQQYYVKLKDNEKNRK 277
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
+ +V++F+ S A+LL + P + +H Q++R + + +F + +
Sbjct: 278 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 337
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
R ILV T++ RG+DI V+ +D P+D Y+HRV
Sbjct: 338 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 375
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 145 bits (367), Expect = 1e-34
Identities = 107/366 (29%), Positives = 176/366 (47%), Gaps = 38/366 (10%)
Query: 41 LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGK-DVLGAAKTGSGKTLAFLIPAIEML--- 96
L + ++AI +MGF++ T +Q+ +P + + DVLGAA+TGSGKTLAF IP + L
Sbjct: 162 LPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLES 221
Query: 97 ----HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGG-ANRRQEAD 151
+ G +++ PTREL +QI L+ ++GG A +QE
Sbjct: 222 SDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERI 281
Query: 152 KLMKGVNILIATPGRLLDHLQNTKGFIF----KNLKALVIDEADRILEIGFEDEMRQIIK 207
+ +I++ATPGRL +Q + F K+LK LV+DE DR++E G+ E+ I+
Sbjct: 282 ISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILN 341
Query: 208 ILPNEDR----QSMLFSATQT-TKVEDLARISLRPGPLFIN------------------- 243
+ E Q+++FSAT T K +D+A + +
Sbjct: 342 KIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHK 401
Query: 244 -VDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLN 302
+D + TA L + + C + + IVF++S ++ + +L
Sbjct: 402 VIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVLK 461
Query: 303 YIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDP 362
+++ + LH K Q++R +F ++ +L+ TDVAARGLDI +D +I + P
Sbjct: 462 SVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKV 521
Query: 363 RDYIHR 368
YIHR
Sbjct: 522 EIYIHR 527
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 145 bits (367), Expect = 1e-34
Identities = 91/354 (25%), Positives = 187/354 (52%), Gaps = 12/354 (3%)
Query: 18 ETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGA 77
+ + +V +T E SF+D+ + + ++ + + GF + +A+Q R + P+L G+DV+
Sbjct: 19 DDDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQ 78
Query: 78 AKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF 137
A++G+GKT + +++ + + + ++++PTRELA Q + + +
Sbjct: 79 AQSGTGKTSMIALSVCQVVDTSSREVQ----ALILSPTRELATQTEKTIQAIGLHANIQA 134
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG 197
IGG + ++ KL GV+++ TPGR+ D ++ + + +K L++DE+D +L G
Sbjct: 135 HACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-RSLRTRAIKLLILDESDEMLSRG 193
Query: 198 FEDEMRQIIKILPNEDRQSMLFSATQTTKVEDL-ARISLRPGPLFINVDSEKDTSTADGL 256
F+D++ + + LP D Q L SAT ++ ++ ++ P + + ++D T +G+
Sbjct: 194 FKDQIYDVYRYLP-PDLQVCLVSATLPHEILEMTSKFMTEPVKILV----KRDELTLEGI 248
Query: 257 EQGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQ 315
+Q +V E ++ + + ++F ++ V Y +E + + V +HG
Sbjct: 249 KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDM 308
Query: 316 KQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q++R EF + + +L+ TDV ARG+D+ V +I +D P++ YIHR+
Sbjct: 309 PQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 362
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 145 bits (366), Expect = 1e-34
Identities = 96/353 (27%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 18 ETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGA 77
+ E +V +T + SF D+ ++D ++ + G+ + + +Q R + P+L G+DV+
Sbjct: 6 DEENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQ 65
Query: 78 AKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF 137
A++G+GKT I ++++ K + V+V++P+RELA Q + + +
Sbjct: 66 AQSGTGKTSMIAISVCQIVNISSRKVQ----VLVLSPSRELASQTEKTIQAIGAHTNIQA 121
Query: 138 GIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG 197
IGG + ++ KL +GV+ + TPGR+ D ++ K +K LV+DE+D +L G
Sbjct: 122 HACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGS-LQTKAVKLLVLDESDEMLSKG 180
Query: 198 FEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLE 257
+D++ + + LP+ D Q L SAT ++ ++ P+ I V + D T +G++
Sbjct: 181 LKDQIYDVYRALPH-DIQVCLISATLPQEILEMTE-KFMTDPVRILV--KPDELTLEGIK 236
Query: 258 QGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQK 316
Q YV + ++ + R + I+F ++ V + E + + V +HG ++
Sbjct: 237 QYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKR 296
Query: 317 QQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q++R + +F + + +L+ +DV ARG+D+ V +I +D P++P YIHR+
Sbjct: 297 QKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRI 349
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 144 bits (364), Expect = 2e-34
Identities = 111/363 (30%), Positives = 178/363 (48%), Gaps = 22/363 (6%)
Query: 20 ETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAK 79
E+ VK E +F + M I K GF + + +Q++ P LL+G+D +G ++
Sbjct: 73 ESTVKIPPPVNSFEQAFGS---NASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQ 129
Query: 80 TGSGKTLAFLIPA-------IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEF 132
TGSGKTLAFL+PA + + + V+V++PTRELA QI G ++ +
Sbjct: 130 TGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKK-YSY 188
Query: 133 HSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADR 192
+ + GG +R ++ + GV I+IATPGRL D L N ++ +V+DEADR
Sbjct: 189 NGYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTD-LSNDGVISLASVTYVVLDEADR 247
Query: 193 ILEIGFEDEMRQII-KILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTS 251
+L++GFE +R+I+ +I P DR L SAT V L + + +N D +
Sbjct: 248 MLDMGFEVAIRRILFEIRP--DRLVALTSATWPEGVRKLTDKYTKEAVMAVN--GSLDLT 303
Query: 252 TADGLEQGYVVCESDKR-----XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDL 306
+ + Q + D R Q K+I+F+ S + + +
Sbjct: 304 SCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGI 363
Query: 307 PVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYI 366
LHG + Q R + + E ILV TD+A+RG+D+P + ++ +D P D +Y+
Sbjct: 364 NSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYV 423
Query: 367 HRV 369
HRV
Sbjct: 424 HRV 426
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 144 bits (362), Expect = 4e-34
Identities = 120/402 (29%), Positives = 194/402 (47%), Gaps = 25/402 (6%)
Query: 38 DLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLH 97
+ K++ ++ I GF T +Q + IP +L G+++L +A TGSGKTLAF IP +L
Sbjct: 61 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIP---ILM 117
Query: 98 SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT-FGIVI---GGANRRQEADKL 153
LK G ++I+PTRELA QI REL++ T F I + ++ K
Sbjct: 118 QLKQPANKGFRALIISPTRELASQIH---RELIKISEGTGFRIHMIHKAAVAAKKFGPKS 174
Query: 154 MKGVNILIATPGRLLDHL-QNTKGFIFKNLKALVIDEADRILE---IGFEDEMRQIIKIL 209
K +IL+ TP RL+ L Q+ G +++ LV+DE+D++ E GF D++ I
Sbjct: 175 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLAC 234
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-R 268
+ + +FSAT VE +++L I+V S + +EQ + S+ +
Sbjct: 235 TSHKVRRAMFSATFAYDVEQWCKLNLDN---VISVSIGARNSAVETVEQELLFVGSETGK 291
Query: 269 XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 328
K+ V+VF+ S K L Y + V +H ++ QQ+R NT F
Sbjct: 292 LLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFR 351
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTP 388
+ +L+CT + ARG+D V+ +I +D P +YIHR+ ++ F T
Sbjct: 352 AGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNKGKAITFFTE 410
Query: 389 TELGFLR----YLKAAKVPLNEYEFPTNKIANVQAQLEKLIK 426
+ LR ++ A P+ EY K+ + Q +K+IK
Sbjct: 411 DDKPLLRSVANVIQQAGCPVPEYIKGFQKL--LSKQKKKMIK 450
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 144 bits (362), Expect = 4e-34
Identities = 105/321 (32%), Positives = 176/321 (54%), Gaps = 11/321 (3%)
Query: 51 KMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVI 110
K G+ T +Q + IP L G+D+L +A TGSGKT AFL+P I + +L F+ + +
Sbjct: 220 KSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI--MRAL-FESKT-PSAL 275
Query: 111 VITPTRELALQIFGVARELME-FHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLD 169
++TPTRELA+QI A+ELM +++GG + +L + V ++IATPGRLLD
Sbjct: 276 ILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLD 335
Query: 170 HLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVED 229
++ + + +K +V+DEAD +L++GF+ ++ I++ +PN D Q++L SAT T +E
Sbjct: 336 IIKQSSVELC-GVKIVVVDEADTMLKMGFQQQVLDILENIPN-DCQTILVSATIPTSIEQ 393
Query: 230 LARISLRPGPLFINVDSEKDTSTADGLE-QGYVVCESDKRXXXXXXXXKRNQKKKVIVFL 288
LA L P+ I + EK+ A+ + +V + K+ K+ K V+VF+
Sbjct: 394 LAS-QLLHNPVRI-ITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFV 451
Query: 289 SSCNSVKYYAELLNYI-DLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDI 347
+E + I L + +H ++ Q +R N + ++V T V RGLD+
Sbjct: 452 DCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDL 511
Query: 348 PAVDWIIQFDPPDDPRDYIHR 368
+V ++ FD P +Y+H+
Sbjct: 512 ISVRLVVNFDMPSSMDEYVHQ 532
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 143 bits (361), Expect = 5e-34
Identities = 112/345 (32%), Positives = 176/345 (50%), Gaps = 27/345 (7%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SF DL S +KA+GK ++ T +Q IP L+ G++++ A TG GKT+ FLIP IE
Sbjct: 100 SFKDL-CSPLLIKALGKE-YSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIE 157
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
+K KP+ +I+PTREL QI A +L+ + G ++Q+
Sbjct: 158 RHRQMK-KPQ----ACIISPTRELCEQIRVEASKLVAGSRIRVVSIYG---KKQDLPSY- 208
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214
GV+I++ATPGRL+D L K + ++ V+DEAD++L++GFE +R+I +P ++
Sbjct: 209 SGVDIVVATPGRLIDLLHRKKVDL-SEIRMFVLDEADKLLDMGFEIPIREIHGFVP-KNT 266
Query: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXX 274
Q+ LFSAT + K+ + L + I + SE T + Q V + K+
Sbjct: 267 QTCLFSATYSPKLTRMINYFLPEDKVSIEISSE----TLKNIRQEIVEVRNKKKMLLNIL 322
Query: 275 XXK----------RNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
Q KV+VF+ + ++L + + LHG ++Q R
Sbjct: 323 KGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEAL 382
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F N ++V T VAARG+DI V +I +D P D ++YIHR+
Sbjct: 383 KGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRI 427
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 143 bits (361), Expect = 5e-34
Identities = 115/445 (25%), Positives = 194/445 (42%), Gaps = 42/445 (9%)
Query: 3 GNKRVRDAESEQDHAETETVVKDTATTGEVEG-SFSDLKLSDGTMKAIGKMGFTQMTAVQ 61
G++R + D KDT TG +F+++ S+ MKA+ + F + +Q
Sbjct: 342 GDRRSVVYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQ 401
Query: 62 TRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG-----VIVITPTR 116
P++ GK + A ++GSGKTLA+L+P I+ L + + + + VIV+ PT
Sbjct: 402 AMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTA 461
Query: 117 ELALQIFGVAREL----MEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQ 172
ELA Q+ R + + F S +V GG +R + + L +GV++LIATPGR +L
Sbjct: 462 ELASQVLANCRSISKSGVPFRSM---VVTGGFRQRTQLENLEQGVDVLIATPGR-FTYLM 517
Query: 173 NTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLAR 232
N NL+ ++DE D + +DE ++ L N + + T ++
Sbjct: 518 NEGILGLSNLRCAILDEVDILFG---DDEFEAALQNLINSSPVTAQYLFVTATLPLEIYN 574
Query: 233 ISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQK----------- 281
+ P V + ++ LE+ V C D +N+K
Sbjct: 575 KLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENP 634
Query: 282 -KKVIVFLSSCNSVKYYAELLNYID-----LPVLELHGKQKQQKRTNTFFEFCNAERG-- 333
K I+F + + + + +D L VL H Q+ R EF +++
Sbjct: 635 VSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEEN 694
Query: 334 --ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTEL 391
LVCTD A+RG+D VD ++ FD P DP +Y+ RV + +F+ ++
Sbjct: 695 SLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQV 754
Query: 392 GFLRYLKAAKVPLNEYEFPTNKIAN 416
G R + + NE P + + N
Sbjct: 755 GLARRI----IERNEKGHPVHDVPN 775
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 142 bits (358), Expect = 1e-33
Identities = 73/123 (59%), Positives = 95/123 (76%), Gaps = 3/123 (2%)
Query: 141 IGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFED 200
+GG+NR EA KL G+NI++AT GRLLDH+QNT GF++KNL+ LVIDEADRIL++GFE+
Sbjct: 1 MGGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 60
Query: 201 EMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGY 260
E++QIIK+L RQ+MLFSATQT KVEDLARISL+ PL++ D + T L G
Sbjct: 61 ELKQIIKLLLTH-RQTMLFSATQTQKVEDLARISLKKEPLYVGDDDDNANETVADL--GT 117
Query: 261 VVC 263
++C
Sbjct: 118 LLC 120
Score = 65.1 bits (157), Expect = 2e-10
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
A+ G L+CTDVAARGLDI VD I+Q+DPPDDP++YIH V
Sbjct: 113 ADLGTLLCTDVAARGLDITEVDCIVQYDPPDDPKEYIHSV 152
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 142 bits (358), Expect = 1e-33
Identities = 109/384 (28%), Positives = 181/384 (46%), Gaps = 26/384 (6%)
Query: 3 GNKRVRDAESEQ--DHAETETVVKDTAT-----------TGEVEGSFSDLKLSDGTMKAI 49
G+ R +A E+ D+ E + V D+ G F D L ++AI
Sbjct: 2 GDARDNEAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAI 61
Query: 50 GKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNG-TG 108
GF + VQ IP + G DV+ AK+G GKT F++ ++ + +P G
Sbjct: 62 VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-----EPSPGQVS 116
Query: 109 VIVITPTRELALQIFGVARELMEFHSQT-FGIVIGGANRRQEADKLMKGV-NILIATPGR 166
+V+ TRELA QI + T + GG N + D L +I++ TPGR
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGR 176
Query: 167 LLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPNEDRQSMLFSATQTT 225
+L L K KN++ ++DE D++LE + ++++I K+ P+ D+Q M+FSAT +
Sbjct: 177 VLA-LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSK 234
Query: 226 KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVI 285
++ + + ++ P+ I VD E T GL Q Y+ ++ +V+
Sbjct: 235 EIRPVCKKFMQD-PMEIYVDDEAKL-TLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVV 292
Query: 286 VFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGL 345
+F+ S + +LL + P + +H Q++R + F + ILV TD+ RG+
Sbjct: 293 IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGI 352
Query: 346 DIPAVDWIIQFDPPDDPRDYIHRV 369
DI V+ +I +D PD Y+HRV
Sbjct: 353 DIERVNIVINYDMPDSADTYLHRV 376
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 142 bits (357), Expect = 2e-33
Identities = 97/345 (28%), Positives = 181/345 (52%), Gaps = 10/345 (2%)
Query: 10 AESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLL 69
AE+++ + + TV +++ + +F + L + ++ I GF + +A+Q R IP +L
Sbjct: 2 AENKKKNDDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAIL 61
Query: 70 AGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVAREL 129
+DV+ A++G+GKT F +I +L SL + R T ++++PTRELA+QI V L
Sbjct: 62 KARDVIAQAQSGTGKTATF---SISVLQSLDTQVRE-TQALILSPTRELAVQIQKVVLAL 117
Query: 130 MEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDE 189
++ + IGG N ++ KL G +++ TPGR+ D ++ + + +K LV+DE
Sbjct: 118 GDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDE 176
Query: 190 ADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKD 249
AD +L GF++++ I + LP Q +L SAT ++ ++ P+ I V ++D
Sbjct: 177 ADEMLNKGFKEQLYDIYRYLP-PGAQVVLLSATLPHEILEMTS-KFMTDPIRILV--KRD 232
Query: 250 TSTADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPV 308
T +G++Q +V + ++ + + ++F ++ V + + + + V
Sbjct: 233 ELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTV 292
Query: 309 LELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWI 353
+HG +Q+ R EF +L+ TDV ARGLD+P V +
Sbjct: 293 SSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLV 337
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 142 bits (357), Expect = 2e-33
Identities = 109/384 (28%), Positives = 181/384 (46%), Gaps = 26/384 (6%)
Query: 3 GNKRVRDAESEQ--DHAETETVVKDTAT-----------TGEVEGSFSDLKLSDGTMKAI 49
G+ R +A E+ D+ E + V D+ G F D L ++AI
Sbjct: 2 GDARDNEAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAI 61
Query: 50 GKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNG-TG 108
GF + VQ IP + G DV+ AK+G GKT F++ ++ + +P G
Sbjct: 62 VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI-----EPSPGQVS 116
Query: 109 VIVITPTRELALQIFGVARELMEFHSQT-FGIVIGGANRRQEADKLMKGV-NILIATPGR 166
+V+ TRELA QI + T + GG N + D L +I++ TPGR
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGR 176
Query: 167 LLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPNEDRQSMLFSATQTT 225
+L L K KN++ ++DE D++LE + ++++I K+ P+ D+Q M+FSAT +
Sbjct: 177 VLA-LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSK 234
Query: 226 KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVI 285
++ + + ++ P+ I VD E T GL Q Y+ ++ +V+
Sbjct: 235 EIRPVCKKFMQD-PMEIYVDDEAKL-TLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVV 292
Query: 286 VFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGL 345
+F+ S + +LL + P + +H Q++R + F + ILV TD+ RG+
Sbjct: 293 IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGI 352
Query: 346 DIPAVDWIIQFDPPDDPRDYIHRV 369
DI V+ +I +D PD Y+HRV
Sbjct: 353 DIERVNIVINYDMPDSADTYLHRV 376
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 140 bits (352), Expect = 6e-33
Identities = 105/380 (27%), Positives = 194/380 (50%), Gaps = 27/380 (7%)
Query: 5 KRVRDAESEQDHAETET-------VVKDTATTGEVEGS-FSDLKLSDGTMKAIGKMGFTQ 56
+++ D E EQ+ + + K T + S F D L ++AIG GF
Sbjct: 4 EQLLDYEEEQEEIQDKQPEVGGGDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEH 63
Query: 57 MTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNG-TGVIVITPT 115
+ VQ IP + G DV+ AK+G GKT F+I ++ L +P +G V+ + T
Sbjct: 64 PSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQL-----EPVDGEVSVVCMCHT 118
Query: 116 RELALQIFGVARELMEFHSQTFGIVI----GGANRRQEADKLMKGV-NILIATPGRLLDH 170
RELA QI ++E F G+ + GG +++ ++L +I++ TPGR+L
Sbjct: 119 RELAFQI---SKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLAL 175
Query: 171 LQNTKGFIFKNLKALVIDEADRIL-EIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVED 229
++ K + K +K V+DE D+++ + ++++I+K+ P + +Q M+FSAT ++
Sbjct: 176 ARSGKLKLDK-VKYFVLDECDKMIGDADMRRDVQEIVKMTPQQ-KQVMMFSATLPKELRT 233
Query: 230 LARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLS 289
+ + ++ P+ + VD E T GL+Q YV + ++ + +V++F+
Sbjct: 234 VCKRFMQD-PMEVYVDDEAKL-TLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVK 291
Query: 290 SCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPA 349
+ + +LL + P + +H + Q++R + + F + ++ ILV TD+ RG+DI
Sbjct: 292 AVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIER 351
Query: 350 VDWIIQFDPPDDPRDYIHRV 369
V+ + +D P+D Y+HRV
Sbjct: 352 VNIVFNYDMPEDSDSYLHRV 371
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 140 bits (352), Expect = 6e-33
Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 73/437 (16%)
Query: 5 KRVRDAESEQDHAETETVVKDTATTGEVE--------GSFSDLKLSDGTMKAIGKMGFTQ 56
K++ +A QD + + D +VE ++S ++L MK+I ++ F +
Sbjct: 154 KKINEAAKNQDASAAVSCDGDDTVEEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKE 213
Query: 57 MTAVQTRTIP-PLLAGKDVLGAAKTGSGKTLAFLIPAIEML----------------HSL 99
T +Q GKDV+GAA+TGSGKTLAF +P ++ L +
Sbjct: 214 PTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQ 273
Query: 100 KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNI 159
K+ ++ITPTRELALQ+ + S ++GG ++ +L + I
Sbjct: 274 KYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEI 333
Query: 160 LIATPGRLLDHLQNTKGFIFK--NLKALVIDEADRILEIGFEDEMRQIIKILPNED---- 213
++ATPGRL + + + + + +L V+DEADR++E G E++ I+ +LP D
Sbjct: 334 VVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNE 393
Query: 214 -------------------RQSMLFSAT---------------------QTTKVEDLARI 233
RQ+ +FSAT + +V + +
Sbjct: 394 GKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVL 453
Query: 234 SLRPGPL--FINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSC 291
S R G +D + A +E+ ++ CE ++ + + + IVF +S
Sbjct: 454 SERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSV 513
Query: 292 NSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVD 351
+++ + LL + L V L + KQ+ R + F +E GIL+ TD+ ARG+DI V
Sbjct: 514 TDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVR 573
Query: 352 WIIQFDPPDDPRDYIHR 368
II + P Y+HR
Sbjct: 574 TIIHYKLPHSAEVYVHR 590
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 139 bits (349), Expect = 1e-32
Identities = 105/355 (29%), Positives = 172/355 (47%), Gaps = 31/355 (8%)
Query: 34 GSFSDL----KLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFL 89
GSF DL + + + GFT+ T +Q IP L +DVL TGSGKTLAFL
Sbjct: 118 GSFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFL 177
Query: 90 IPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQE 149
IP ++ + + K G ++I+PT+ELA QIF +E ++ I + Q
Sbjct: 178 IPLVQQI--IDDKQTAGLKGLIISPTKELANQIF------IECFKLSYKIFLEKKRPLQV 229
Query: 150 A-----------DKLM--KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI 196
A +K++ K +I+I+TP RL+D ++N + +K L+ DEAD++ +
Sbjct: 230 ALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKN-EALDLSKVKHLIFDEADKLFDK 288
Query: 197 GFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGL 256
F ++ I+ + +FSAT + VE++A+ S+ P+ + + ++ +T +
Sbjct: 289 TFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQ-SIMMDPVRVIIGHKEAANT--NI 345
Query: 257 EQGYVVC--ESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGK 314
EQ + C E K + K +I+FL S K L Y + V +H +
Sbjct: 346 EQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAE 405
Query: 315 QKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+ +R F E L+CTDV ARG+D V+ +I +D P + Y+HR+
Sbjct: 406 RTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRI 460
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 138 bits (348), Expect = 2e-32
Identities = 125/484 (25%), Positives = 210/484 (42%), Gaps = 79/484 (16%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVE-GSFSDLKLSDGT---------MKAIGKMG 53
+ ++ D + D E V+K+ ++ S + L + T ++++ +
Sbjct: 131 SSKLTDPSEDVDEDVDEDVLKENVFNKDINIDDISPVNLPEWTNLAPLSMTILQSLQNLN 190
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGV-IVI 112
F + T +Q ++IP ++ G DV+G A TGSGKTLA+ IP +E L S F +N + ++
Sbjct: 191 FLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLIS-NFSQKNKKPISLIF 249
Query: 113 TPTRELALQIFGVARELME---FHSQTFGIVIGGANRRQEADKLMKGVN---ILIATPGR 166
TPTRELA Q+ +++ E SQ + + G Q+ +L+K N I+IATPGR
Sbjct: 250 TPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGR 309
Query: 167 LLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR---------- 214
L+ L+ I F + L++DEADR+L+ G DE +IIK L E R
Sbjct: 310 FLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSS 369
Query: 215 ---QSMLFSAT----------QTTKVED-----------------LARISLRPGPLFINV 244
Q+++FSAT + +V+D +++I P+ I+
Sbjct: 370 KIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDT 429
Query: 245 DSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYI 304
+ E S+ +++ + C +R ++F ++ +SVK LN +
Sbjct: 430 NPESKVSSQ--IKESLIECPPLERDLYCYYFLTM-FPGTTLIFCNAIDSVKKLTVYLNNL 486
Query: 305 DLPVLELHGKQKQQKRTNTFFEFCNAE----------------RGILVCTDVAARGLDIP 348
+P ++H Q+ R + F +L+ +DVAARGLDIP
Sbjct: 487 GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIP 546
Query: 349 AVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYE 408
V +I + P YIHR +++ +G LR L+ N
Sbjct: 547 GVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATKNSVS 606
Query: 409 FPTN 412
N
Sbjct: 607 TDLN 610
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 136 bits (343), Expect = 6e-32
Identities = 109/384 (28%), Positives = 189/384 (48%), Gaps = 32/384 (8%)
Query: 8 RDAESEQDHAETETVVKDTATTGEVE-----------GSFSDLKLSDGTMKAIGKMGFTQ 56
R A E+D ++++ + ++ +V+ + S ++S + + G
Sbjct: 59 RKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANGIEA 118
Query: 57 MTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHS--LKFKPRNGTG----VI 110
+ +Q T +L G D++G A+TG GKTLAF++P +E L + K K + G G V+
Sbjct: 119 LFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVL 178
Query: 111 VITPTRELALQIFGVARELMEFHSQTFGI----VIGGANRRQEADKLMKGVNILIATPGR 166
V+ PTRELA Q+ + + + G+ + GG + + KL +GV+I++ TPGR
Sbjct: 179 VLLPTRELAKQVAAD----FDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 167 LLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQII-KILPNEDRQSMLFSATQTT 225
+ DH++ + F L+ V+DEAD +L +GF +++ I+ K+ + Q++LFSAT +
Sbjct: 235 IKDHIER-QNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPS 293
Query: 226 KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXK-RNQKKKV 284
V++++ L+ I++ ++ + + C + +
Sbjct: 294 WVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQT 353
Query: 285 IVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARG 344
I+F + V + LL+ LHG+ Q +R T F N + LV T+VAARG
Sbjct: 354 IIFAETKVQVSELSGLLD----GSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARG 409
Query: 345 LDIPAVDWIIQFDPPDDPRDYIHR 368
LDI V IIQ +PP + YIHR
Sbjct: 410 LDINDVQLIIQCEPPREVEAYIHR 433
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 135 bits (341), Expect = 1e-31
Identities = 114/396 (28%), Positives = 194/396 (48%), Gaps = 36/396 (9%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVE----GSFSDLK-LSDGTMKAIGKMGFTQMT 58
+K DA + D + + V A+TG+VE SF K L + +M + T
Sbjct: 703 DKMFEDAVNNDDKIDFDQKV--VASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPT 760
Query: 59 AVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG------VIVI 112
+Q + P++ G DV+ A TGSGKTLAFLIP + L K R+ T ++++
Sbjct: 761 PIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIV 820
Query: 113 TPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL--MKGVNILIATPGRLLDH 170
PTREL Q F AR+L G+ GG +R L +NIL+AT GRL D
Sbjct: 821 APTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDF 880
Query: 171 LQNTKGFIFKNLKALVIDEADRILEIG-FEDEMRQIIKILPNEDRQSMLFSA--TQTTKV 227
+ N +K +V+DEADR+++ F +E+ +II +Q++LFSA ++ +
Sbjct: 881 V-NAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQS 939
Query: 228 EDLARISLRPGPLFINVDSEKDTSTADGLEQGYV-VCESDKRXXXXXXXXKRN------- 279
+DL + ++ G + VD K + + ++Q + V ++KR
Sbjct: 940 DDLPKF-VKEGYTMLQVD--KFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLP 996
Query: 280 ----QKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL 335
+K+K ++F++S A L++ + + +H Q Q++R T +F + +
Sbjct: 997 DAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCM 1056
Query: 336 VCTDVAARGLDIPAVDWIIQFDPPDDP--RDYIHRV 369
V ++V ARGL+I +D ++ +D PD +Y++R+
Sbjct: 1057 VASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRI 1092
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 134 bits (338), Expect = 2e-31
Identities = 102/313 (32%), Positives = 154/313 (48%), Gaps = 13/313 (4%)
Query: 33 EGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPA 92
E +FSD L +AI K F + T+VQ+ TIP L GKD++ A+TGSGKT A+LIP
Sbjct: 13 EKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPI 72
Query: 93 IEMLHSLKFKPRNGTGV--IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
+E+L K N G+ +++ PTRELA Q++ V +L F S+ + N
Sbjct: 73 LELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTV 132
Query: 151 DK--LMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFEDEMRQIIK 207
+ L+ +I+IATP R + H+ G + LK LVIDEAD +L G+ ++M+ + +
Sbjct: 133 QRPLLLDLPDIVIATPSRCVVHV--ASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSR 190
Query: 208 ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVC-ESD 266
LP QS L SAT + + L ++ R P + V KD + L Q V C E D
Sbjct: 191 SLP-RGTQSFLMSATLSKNIASLQKLVCR-NPFILAV---KDKEASGKLTQYVVKCSEQD 245
Query: 267 KRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFE 326
K R K K+++F++ N L L L L+ + R + +
Sbjct: 246 KFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQ 305
Query: 327 FCNAERGILVCTD 339
+ I++ TD
Sbjct: 306 YNKGLYQIIIATD 318
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 134 bits (336), Expect = 4e-31
Identities = 127/476 (26%), Positives = 217/476 (44%), Gaps = 66/476 (13%)
Query: 10 AESEQDHAETETVVKDTATTGEVE--------GSFSDLKLSDGTMKAIGKMGFTQMTAVQ 61
AE+E D +TV++ A ++ G+ SD L G A G + ++
Sbjct: 291 AEAESDALPDDTVIESEALPSDIAAEARAKTGGTVSDQALLFGDDDA----GEGPSSLIR 346
Query: 62 TRTIPPLLAGKDV-LGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELAL 120
+ +P ++ L +TG+ K + + K P+ +V+TPTRELA+
Sbjct: 347 EKPVPKQNENEEENLDKEQTGNLKQ-----ELDDKSATCKAYPKRPLLGLVLTPTRELAV 401
Query: 121 QIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLD-------HLQN 173
Q+ + F I++GG + +++ L + I++ATPGRL + HL+N
Sbjct: 402 QVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRN 461
Query: 174 TKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP----NEDRQSMLFSATQT----- 224
+ L+ LV+DEADR++E G E+ Q++++L N RQ+++FSAT T
Sbjct: 462 -----LRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQA 516
Query: 225 ---------TKVED--------LARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK 267
TK D + +I +R P I D ++ +T + L + + CE+D+
Sbjct: 517 PARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVI--DLTRNEATVETLTETKIHCETDE 574
Query: 268 RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEF 327
+ + + +VF +S + +K + LL +D+ L LH Q++R +F
Sbjct: 575 KDFYLYYFLMQYPGRS-LVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQF 633
Query: 328 CNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLT 387
E +L+ TDVAARGLDIP V +I + P Y+HR SLM +
Sbjct: 634 ARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHR-SGRTARATNEGLSLMLIG 692
Query: 388 PTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYL-HQIAKDGYRSY 442
P ++ + + K K + + P + VQ + ++K L QI K YR++
Sbjct: 693 PEDV--INFKKIYKTLKKDEDIP---LFPVQTKYMDVVKERIRLARQIEKSEYRNF 743
Score = 54.3 bits (129), Expect = 4e-07
Identities = 30/72 (41%), Positives = 47/72 (64%), Gaps = 3/72 (4%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGK-DVLGAAKTGSGKTLAFLIPAI 93
++ DL + ++A+ +GF+ T +Q T+ P + K D+LGAA+TGSGKTLAF IP I
Sbjct: 193 AWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 252
Query: 94 EMLHSLKFKPRN 105
+ L+++ RN
Sbjct: 253 HAV--LQWQKRN 262
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 133 bits (334), Expect = 7e-31
Identities = 107/357 (29%), Positives = 175/357 (48%), Gaps = 41/357 (11%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+F +L LS+ M A+ ++ T +Q IP ++ K V+ + TGSGKTLA+L+P ++
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172
Query: 95 MLHSL----------KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFG--IVIG 142
+L L K KPR +V+ PTREL+ Q+ ++H F +V G
Sbjct: 173 VLSELMREDEANLGKKTKPRR-PRTVVLCPTRELSEQVC----LHQDYHHARFRSILVSG 227
Query: 143 GANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEM 202
G+ R + D L +++++ TPGR+L H++ ++ ++ LV+DEAD + + GF E+
Sbjct: 228 GSRIRPQEDSLNNAIDMVVGTPGRILQHIEE-GNMVYGDIAYLVLDEADTMFDRGFGPEI 286
Query: 203 RQIIKILPNEDR---QSMLFSATQTTKVEDLARIS-LRPGPLFINV-----DSEKDTSTA 253
R+ + L + + + F A Q E+ I LR L + D K +
Sbjct: 287 RKFLAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGE 346
Query: 254 DGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHG 313
D LE V E + KV+VF ++ NS + L+ + + HG
Sbjct: 347 DKLEALLQVLEPSLA-----------KGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHG 395
Query: 314 KQKQQKRTNTFFEFCNAERG--ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
+ ++R +F + E LVCTD+AARGLD+ VD ++ FD P + DY+HR
Sbjct: 396 EVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHR 451
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 132 bits (333), Expect = 9e-31
Identities = 86/230 (37%), Positives = 136/230 (58%), Gaps = 11/230 (4%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F++L LS ++ ++G + T VQ IP +L G+D LG AKTGSGKT AF++P ++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L + G +V+TPTRELA QI R L + I++GG + +A +L +
Sbjct: 64 LSEDPY----GIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFED---EMRQIIKILPNE 212
+++IATPGRL DHL+++ F K ++ LV+DEADR+LE G D ++ I+ +P
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 213 DRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVV 262
RQ++LFSAT T + +L ++ P F +++ ST + L+Q Y++
Sbjct: 180 -RQTLLFSATLTDTLRELQGLATNQ-PFF--WEAQAPVSTVEQLDQRYLL 225
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 131 bits (329), Expect = 3e-30
Identities = 111/393 (28%), Positives = 188/393 (47%), Gaps = 38/393 (9%)
Query: 8 RDAESEQDHAETETVVKDTATTGEV--EGSFSDLKLSDGTMKAIGKMG--FTQMTAVQTR 63
+ + +DH E ++ ++ +GSF+DL L + A+ + Q T VQ+
Sbjct: 98 KSRRARRDHFSIERAQQEAPAVRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQSS 157
Query: 64 TIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML---HSLKFKPRNGTGVIVITPTRELAL 120
TIP LL G+ V+ AA+TGSGKTL++L+P ++ L SL P +V+ P+RELA
Sbjct: 158 TIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQ 217
Query: 121 QIFGVARELMEFHSQTFGIVI----GGANRRQEADKLMK--GVNILIATPGRLLDHLQNT 174
Q+ VA+ L ++ G+++ GG R+ +L + ++L+ATPG L L++
Sbjct: 218 QVRAVAQPL----GRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKS- 272
Query: 175 KGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP------------NEDRQSMLFSAT 222
+ + L LV+DEAD +L+ F + + I++ N Q +L AT
Sbjct: 273 RLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGAT 332
Query: 223 QTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKK 282
V L P + + S K ++Q ++ + + K +
Sbjct: 333 FPEGVGQLLNKVASPDAV-TTITSSKLHCIMPHVKQTFLRLKGADKVAELVHILKHRDRA 391
Query: 283 K-------VIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL 335
+ V+VF +S ++V + +L+ + L L G+ R F F + R IL
Sbjct: 392 ERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDIL 451
Query: 336 VCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
+CTD+A+RGLD V+ ++ +D P +DYIHR
Sbjct: 452 LCTDIASRGLDSTGVELVVNYDFPPTLQDYIHR 484
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 131 bits (329), Expect = 3e-30
Identities = 109/433 (25%), Positives = 190/433 (43%), Gaps = 54/433 (12%)
Query: 5 KRVRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRT 64
++ + E +++ E E K+ E SF +L L ++A+ K G + T +Q
Sbjct: 21 EKAEEVEEQRNDREQEEEQKEE----EAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSA 76
Query: 65 IPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLK--FKPRNGTGVIVITPTRELALQI 122
IP +L GKDV+ AKTGSGKTLA+L+P ++ L S K + ++ P+REL Q+
Sbjct: 77 IPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Query: 123 FGVARELMEF-HSQTFGIVIGGANRRQEADKLMKGV-NILIATPGRL-----LDHLQNTK 175
+ L+E Q + + + + + G+ IL++TP + L+ T
Sbjct: 137 YTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTA 196
Query: 176 GFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISL 235
+ ++L LV+DEAD +L G+ED +R + I+P Q +L SAT ++ VE L ++ L
Sbjct: 197 --VSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRR-CQCLLMSATTSSDVEKLKKLIL 253
Query: 236 -RPGPLFINVDSEKDTSTADGLEQGYVVCES-DKRXXXXXXXXKRNQKKKVIVFLSSCNS 293
P L + D++K+ + ++Q ++ C + DK +KK+++F+++ +
Sbjct: 254 HNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDM 313
Query: 294 VKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTD-------------- 339
L + L+G+ Q R + +F L+ TD
Sbjct: 314 GFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKG 373
Query: 340 ---------------------VAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXX 378
RG+D V +I FD P YIHR+
Sbjct: 374 EANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRI-GRTGRAYS 432
Query: 379 XXXSLMFLTPTEL 391
S+ ++P E+
Sbjct: 433 SGSSVSLISPDEM 445
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 130 bits (328), Expect = 3e-30
Identities = 99/367 (26%), Positives = 177/367 (47%), Gaps = 13/367 (3%)
Query: 35 SFSDLKLSDGT----MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
SF++L G ++ + ++GF + T +Q + IP LL+G++ A TGSGKT AF+
Sbjct: 138 SFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFIC 197
Query: 91 PAIEMLHSLKFKPR-NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQE 149
P + L L +P +G ++++P RELA Q ++L++ F I + +
Sbjct: 198 PMLIKLKVLNCRPSTDGIRAVILSPARELAAQTAREGKKLIK--GSNFHIRLMTKPLVKT 255
Query: 150 ADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKIL 209
AD ++LI+TP RL ++ K + K ++ LV+DE+D++ E ++ ++K
Sbjct: 256 ADFSKLWCDVLISTPMRLKRAIKAKKIDLSK-VEYLVLDESDKLFEQSLLKQIDCVVKAC 314
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-R 268
N LFSAT VE+LAR + + V + + ++ ++Q V S++ +
Sbjct: 315 SNPSIIRSLFSATLPDSVEELARSIMHDA---VRVIIGRKNTASETVKQKLVFAGSEEGK 371
Query: 269 XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 328
+ V++F+ S K + L ++ +H +R N +F
Sbjct: 372 LLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFR 431
Query: 329 NAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTP 388
E+ +L+ TDV ARG+D ++ +I +D PD YIHR+ ++ F T
Sbjct: 432 AGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRI-GRSGRAGRSGEAITFYTE 490
Query: 389 TELGFLR 395
++ FLR
Sbjct: 491 QDVPFLR 497
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 129 bits (325), Expect = 8e-30
Identities = 102/376 (27%), Positives = 167/376 (44%), Gaps = 66/376 (17%)
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVIT 113
F AV TI P +D+ + TGSGKTL++ +P +++L S +P +V+
Sbjct: 7 FPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLAS---RPVRCLRALVVL 63
Query: 114 PTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK------------------ 155
PTR+LALQ+ V + + G +G ++ E +L+K
Sbjct: 64 PTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQN 123
Query: 156 ---GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNE 212
V+IL+ATPGRL+DH+ NTKGF ++L+ LV+DE DR+L ++ + ++++
Sbjct: 124 LESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTS 183
Query: 213 D----------------------RQS---------------MLFSATQTTKVEDLARISL 235
D RQS M+ SAT T L ++ L
Sbjct: 184 DDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDL 243
Query: 236 RPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVK 295
PLF+ + + LE ++CE+ + K + +K I+F SS + +
Sbjct: 244 H-HPLFMTTGGSR-YRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTR 301
Query: 296 YYAELLNYIDLPVL---ELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDW 352
+LLN+ P + E G Q R+ F + +LV +D RG+D+ V
Sbjct: 302 RLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTN 361
Query: 353 IIQFDPPDDPRDYIHR 368
+I +D P + +IHR
Sbjct: 362 VINYDMPPFAKTFIHR 377
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 129 bits (324), Expect = 1e-29
Identities = 123/484 (25%), Positives = 212/484 (43%), Gaps = 50/484 (10%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE- 94
F + L ++A+ +G+++ T +Q + IP L GKD+L A+TGSGKT A+ IP ++
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 95 MLHSLKFKP--RNGTGVIVITPTRELALQIFGVARELMEFHSQTFGI--VIGGANRRQEA 150
+LH P +V+ PT+ELA Q + ++L + ++ + V + +
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP 210
LM+ ++++ TP R+L HLQ + +L+ LV+DEAD + GFE+E++ ++ LP
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188
Query: 211 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES--DKR 268
Q+ L SAT V+ L + L P+ + + E D L+Q VVCE+ DK
Sbjct: 189 -RIYQAFLMSATFNEDVQALKELILH-NPVTLKL-QESQLPGPDQLQQFQVVCETEEDKF 245
Query: 269 XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFC 328
+ K ++F+++ L +P L+G+ + R + +F
Sbjct: 246 LLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFN 305
Query: 329 NAERGILVCTDV---------------------------AARGLDIPAVDWIIQFDPPDD 361
++ TD ARG+D V ++ FD P
Sbjct: 306 QGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPT 365
Query: 362 PRDYIHRVXXXXXXXXXXXXSLMFLTPTE---LGFLRYLKAAK---VPLNEYEFPTNKIA 415
P YIHR L F+ PTE LG + L + + L Y+F +I
Sbjct: 366 PEAYIHRAGRTARANNPGIV-LTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRMEEIE 424
Query: 416 NVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHS--LKTVYQIDKLDLAKVAKSYGFPV 473
+ + ++S Q ++ ++ HS LKT ++ + DL + + P+
Sbjct: 425 GFRYRCRDAMRS--VTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLL--RHDLPL 480
Query: 474 PPKV 477
P V
Sbjct: 481 HPAV 484
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 126 bits (317), Expect = 7e-29
Identities = 115/423 (27%), Positives = 183/423 (43%), Gaps = 86/423 (20%)
Query: 20 ETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLA--------- 70
E + D TT E FS L +S ++ + K T+ AVQ +P LL
Sbjct: 116 EPITVDPNTTVE----FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYS 171
Query: 71 -GKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVAREL 129
G DV +A TGSGKTL+++IP ++ L S + PR +VI PTREL +Q+ +
Sbjct: 172 YGGDVCVSAATGSGKTLSYVIPIVQCL-SHRTVPR--LRCVVIVPTRELTVQV----AKT 224
Query: 130 MEFHSQTFGIVI----GGANRRQEADKLMKGVN-----ILIATPGRLLDHLQNTKGFIFK 180
E++ G+ + G + R E +L N +L++TPGRL+DH++N + F +
Sbjct: 225 FEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQ 284
Query: 181 NLKALVIDEADRILEIGFEDEMRQII------KILPNEDR-------------------- 214
+L+ +VIDEADR+L+ F+D + ++ K L N+
Sbjct: 285 HLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLL 344
Query: 215 --------QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLE--------- 257
Q ++FSAT T +A + L P + V + KD DG E
Sbjct: 345 PYRLPSPLQKLVFSATLTRDPSKIASLKLH-NPRLVLVQN-KDMEVDDGGEIEDDAIVFS 402
Query: 258 -----QGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLE-- 310
Q Y V S ++ ++ F+ S + LL I + +
Sbjct: 403 VPPTLQEYHVSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSF 462
Query: 311 ----LHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYI 366
+ +R F + +LVC+D+ ARG+D+ +I +DPP R Y+
Sbjct: 463 SCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYV 522
Query: 367 HRV 369
HR+
Sbjct: 523 HRI 525
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 125 bits (314), Expect = 1e-28
Identities = 111/406 (27%), Positives = 189/406 (46%), Gaps = 52/406 (12%)
Query: 1 MAGNKRVRDAESEQDHAETETV----------VKDTATTGEVEG----------SFSDLK 40
+A KRV D++ + ++ ETV + D T + FSD
Sbjct: 73 LASRKRVHDSDGDSENEVEETVGDVEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSS 132
Query: 41 LSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLK 100
+S + + + Q + +Q ++IP + ++VL +A TGSGKTLAF +P I+ + LK
Sbjct: 133 MSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELK 192
Query: 101 ----FKPRNGTGV--IVITPTRELALQIFGVARELMEFHSQTFGIVIGGAN-RRQEADKL 153
+ N + + +V+ PTRELA Q + EF I AN +E D
Sbjct: 193 QRADYSSSNSSKLLAVVLEPTRELAAQTY------TEFLKYCANTSISAANFSGEETD-- 244
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI------GFEDEMRQIIK 207
++ +IL++TP R++ HL +L+ LV+DE+DR+ E+ F +++ I K
Sbjct: 245 IQHADILVSTPNRIVFHLDKID---TSSLRWLVVDESDRLFEVVEGQDKCFRNQLAAIYK 301
Query: 208 ILPNEDRQSMLFSATQTTKVEDLARISL-RPGPLFINVDSEKDTSTADGLEQGYVVC-ES 265
+ + FSAT + +VE + ++ G + + + +TS ++Q C
Sbjct: 302 ACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTS----VKQKLTYCGTE 357
Query: 266 DKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYID--LPVLELHGKQKQQKRTNT 323
D + + + K +VF+ S + +LL+ ID L V ++ + ++R T
Sbjct: 358 DGKKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDET 417
Query: 324 FFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
F E +LVCT++ RGLD+ V +I +D P YIHRV
Sbjct: 418 MERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRV 463
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 125 bits (313), Expect = 2e-28
Identities = 98/355 (27%), Positives = 174/355 (48%), Gaps = 31/355 (8%)
Query: 30 GEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFL 89
G+V+ +F +L+L + + + F T +Q IP LA D++ +K+G+GKTL ++
Sbjct: 22 GQVK-TFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYV 80
Query: 90 IPAIEMLHSLKFKPR-NGTGVIVITPTRELALQI----FGVARELMEFHSQTFGIVIGGA 144
I ++ F P N +++ PTRELA+Q+ F + + +F F IGG
Sbjct: 81 IAVVQ-----SFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAF---IGGT 132
Query: 145 NRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI-GFEDEMR 203
+ ++ K M ++I TPGRLL HL + F L+ LV+DEAD++ + + +
Sbjct: 133 DVAKDR-KRMNESRVIIGTPGRLL-HLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVS 190
Query: 204 QIIKILPNEDRQSMLFSATQTTKVED-LARISLRPGPLFINVDSEKDTSTADGL------ 256
++I+ +P ++RQ + SAT +++ LA++ +P + + + + + G+
Sbjct: 191 KLIEAMP-KNRQIIACSATYDQNLDERLAKVMDKP----MLISNSERATVLLGIRQFVYE 245
Query: 257 --EQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGK 314
+Q V E + + ++ I+F SS Y L + + G
Sbjct: 246 LPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGA 305
Query: 315 QKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+Q +R + F + N ILV TD+ ARG+D P + +I DPP D Y+HR+
Sbjct: 306 MEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRI 360
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 125 bits (313), Expect = 2e-28
Identities = 105/394 (26%), Positives = 179/394 (44%), Gaps = 17/394 (4%)
Query: 38 DLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLH 97
D K+ + + F T +Q + +P LL + ++ A TGSGKTLAFL P I L
Sbjct: 123 DFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLR 182
Query: 98 SLKFKPRNGTGVIVITPTRELALQIFGVARELM-EFHSQTFGIVIGGANRRQEADKLMKG 156
+ K G +V+ PTRELA QI+ EL E +T I +++ + +
Sbjct: 183 AHK---TTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQR 239
Query: 157 VNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIG---FEDEMRQIIKILPNE 212
+IL++TP R+ LQ + +++ V+DEADR++E G F++++ I N
Sbjct: 240 YDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNP 299
Query: 213 DRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-RXXX 271
+ FSAT T V A+ +LR + + S + ++Q + S+ +
Sbjct: 300 TKCVAFFSATYTVPV---AKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVA 356
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
++ + V+VF+ S K E L Y + V +H ++ Q +R N F
Sbjct: 357 IRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGS 416
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTEL 391
+L+CT++ RG+D V+ +I +D P YIHR+ ++ F T +
Sbjct: 417 IWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRI-GRTGRAGRPGRAITFFTQEDT 475
Query: 392 GFLR----YLKAAKVPLNEYEFPTNKIANVQAQL 421
LR +K + + EY K+ +A++
Sbjct: 476 SNLRGIALIIKNSGGTVPEYMLQMKKVRKSEAKM 509
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 122 bits (305), Expect = 2e-27
Identities = 97/340 (28%), Positives = 177/340 (51%), Gaps = 24/340 (7%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
FSD+ LSD +KAI GF + + +Q IP +L G +V+ +K+G+GKT+A+ +
Sbjct: 53 FSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAY---TCGV 109
Query: 96 LHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK 155
L + K R T V+V+TPTREL+ Q+ E++ + GI + A + + D +
Sbjct: 110 LGNTKIGER--TQVMVVTPTRELSTQV----TEVISGLAGPLGIKVFSALKNKITDSI-- 161
Query: 156 GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG-FEDEMRQIIKILPNEDR 214
G +++ +PG +L ++ K +K +K +V+DEAD +L+ + +I+K++
Sbjct: 162 GEEVVVGSPGTILKLMELGK-LNYKGVKMIVLDEADILLDKDMMGTQTFRILKLI--SGA 218
Query: 215 QSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXX 274
Q + FSAT + +V+ P + + E++ D ++ Y+ E + +
Sbjct: 219 QMIFFSATFSEQVKQTIEFY---APDAVKMYEERN-GKPDEIKLFYIEAEGENKRRALKS 274
Query: 275 XXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 334
+ ++I+F+S+ +V Y + L V LHG + ++R +F +++ I
Sbjct: 275 LYEYLSISQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSKI 334
Query: 335 LVCTDVAARGLDIPAVDWIIQFDPP-----DDPRDYIHRV 369
L+ TDV +RG+DIP V+ I+ +D P + YIHR+
Sbjct: 335 LLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRI 374
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 121 bits (304), Expect = 2e-27
Identities = 120/474 (25%), Positives = 198/474 (41%), Gaps = 92/474 (19%)
Query: 6 RVRDAESEQDHAETETVVKDTATTGEVE--GSFSDLKLSDGTMKAIGKMGFTQMTAVQTR 63
+ D+ +Q+ + E +TGE E +++ L + ++A+G+ GF T +Q
Sbjct: 185 KAEDSADQQESTDEEAPELVPISTGEAEDMSAWNGLGVPASILRALGEQGFKTPTQIQAL 244
Query: 64 TIP-------------------------PLLAGKDVLGAAKTGSGKTLAFLI------PA 92
T+P P+LAG L SG A + PA
Sbjct: 245 TLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPA 304
Query: 93 IEMLHSLKFKPRNGTGV-----------------------IVITPTRELALQIFGVAREL 129
+ H L P V +V+TPTRELA+Q+
Sbjct: 305 ADE-HELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAA 363
Query: 130 MEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFK--NLKALVI 187
++ + GG ++ L + +I++ATPGRL + + K ++ LVI
Sbjct: 364 AKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVI 423
Query: 188 DEADRILEIGFEDEMRQIIKILPNED-----RQSMLFSATQTTKVEDLA----RISLRPG 238
DE DR++E G +E+R ++K+L +++ RQ+ ++SAT T V DL + ++
Sbjct: 424 DETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSATLTL-VHDLPDHMQKRNVGKR 482
Query: 239 PLFIN---------------------VDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXK 277
P F+ VD TA L + ++C D + +
Sbjct: 483 PKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQ 542
Query: 278 RNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVC 337
R+ + IVF +S + VK A L +D L LH Q++R F ++ G+L+
Sbjct: 543 RHPGR-TIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIA 601
Query: 338 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXXXSLMFLTPTEL 391
TDVAARGLDIP V+ +I + P +Y+HR ++MF+ P E+
Sbjct: 602 TDVAARGLDIPNVEHVIHYQVPRTSENYVHR-SGRTARANKHGITVMFMEPGEV 654
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 121 bits (303), Expect = 3e-27
Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 31/362 (8%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE- 94
F +L+L +KA+ ++G+ Q T +Q+ IP LL GKDV+ A+TGSGKT + +P I+
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTF---GIVIGGANRRQEAD 151
+L+S +V+ PT++L Q V +L+E + I + +
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRH 130
Query: 152 KLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPN 211
L + +I++ATP LL + + K+++ LV+DEAD + G+E + +++IK LP
Sbjct: 131 ALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLP- 189
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXX 271
Q++L SAT T V + + L P+ + ++ + Q + E+DK
Sbjct: 190 PIYQAVLVSATLTDDVVRMKGLCLN-NPVTLKLEEPELVPQDQLSHQRILAEENDKPAIL 248
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
R + K I+F++S + L + L+ + R +T +F
Sbjct: 249 YALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGT 308
Query: 332 RGILVCTD-------------------------VAARGLDIPAVDWIIQFDPPDDPRDYI 366
I++ +D A+RG+D V+ +I FD P D YI
Sbjct: 309 YDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYI 368
Query: 367 HR 368
HR
Sbjct: 369 HR 370
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 120 bits (302), Expect = 4e-27
Identities = 99/317 (31%), Positives = 150/317 (47%), Gaps = 15/317 (4%)
Query: 54 FTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVIT 113
F T +Q L G ++ G A TG+GKTLAFL+P + + K K T V+++
Sbjct: 15 FKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDP-KVKQ---TQVLILA 70
Query: 114 PTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKG-VNILIATPGRLLDHLQ 172
P++ELA+Q VARE + +IGGAN R++ADKL K +I++ T GR+L L
Sbjct: 71 PSQELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVLTMLD 130
Query: 173 NTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLAR 232
L+ ++ DEAD +L D ++ + LP D Q LFSAT DL
Sbjct: 131 G-GALKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPT-DVQLGLFSATSGV---DLKY 185
Query: 233 ISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCN 292
++ G V D A E YV D++ K++ +VF ++ +
Sbjct: 186 VADTFGQEVRPVSVGTDAPAAITHEFQYV----DQKAKASLLIQLARNKQQALVFFNTIS 241
Query: 293 SVKYYAELLNYIDLPVLELHGKQKQQ-KRTNTFFEFCNAERGILVCTDVAARGLDIPAVD 351
+ L + V+ + K+Q +R + F E +L+ TDVAARGLDI +
Sbjct: 242 GLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTDVAARGLDIEDLP 301
Query: 352 WIIQFDPPDDPRDYIHR 368
++ P + YIHR
Sbjct: 302 LVVNAQLPQRKKTYIHR 318
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 120 bits (301), Expect = 5e-27
Identities = 109/393 (27%), Positives = 172/393 (43%), Gaps = 72/393 (18%)
Query: 45 TMKAIGKMGFTQMTAVQTRTIPPLLAG---------KDVLGAAKTGSGKTLAFLIPAIEM 95
T +A+ +M ++ VQ + IP +L +D+ +A TGSGKTLAF IP +++
Sbjct: 148 TCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQL 207
Query: 96 LHS-LKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
L + K R +V+ P ELALQ++ V EL ++ E +KL+
Sbjct: 208 LSQRVDCKVR----ALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLV 263
Query: 155 ---KG-----VNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQI- 205
KG +I++ TPGRL+DHL TKGF K+LK LVIDEADRI++ F++ + +
Sbjct: 264 EQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLD 323
Query: 206 ----------------------IKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFIN 243
++ + +LFSAT + E L + L LF
Sbjct: 324 SHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFAT 383
Query: 244 V--------------DSEKDT---------STADGLEQGYVVCESDKRXXXXXXXXKRNQ 280
V D+E T +T L + Y V E + ++ +
Sbjct: 384 VLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYK 443
Query: 281 KKKVIVFLSSCNSVKYYAELLNYI----DLPVLELHGKQKQQKRTNTFFEFCNAERGILV 336
K+ + F +S + +L + V EL G + R +F + L+
Sbjct: 444 WKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLI 503
Query: 337 CTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
C+D ARG+D+ VD ++ ++ P YIHRV
Sbjct: 504 CSDALARGIDVADVDVVLSYETPRHITTYIHRV 536
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 120 bits (300), Expect = 6e-27
Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 20/345 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
SF +L+L ++ + MGF + + +Q +P +LA ++++ +++G+GKT AF++
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADK 152
+ + P+ + ++PT ELALQ V ++ +F+ + N+ + K
Sbjct: 153 LSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 208
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI-GFEDEMRQIIKILPN 211
+ + I+I TPG +LD K K +K V+DEAD ++ G +D+ +I ++LP
Sbjct: 209 ISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES-DKRXX 270
+ Q +LFSAT V A+ + P P I + E++T D ++Q YV+C S D++
Sbjct: 267 -NCQMLLFSATFEDSVWKFAQ-KVVPDPNVIKLKREEET--LDTIKQYYVLCSSRDEKFQ 322
Query: 271 XXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNA 330
+ ++F + + + A L+ V L G+ ++R F
Sbjct: 323 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382
Query: 331 ERGILVCTDVAARGLDIPAVDWIIQFDPP------DDPRDYIHRV 369
+ +LV T+V ARG+D+ V +I FD P D Y+HR+
Sbjct: 383 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 119 bits (299), Expect = 8e-27
Identities = 97/386 (25%), Positives = 170/386 (43%), Gaps = 54/386 (13%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SF +L L D + ++ + GF+ T VQ+ +P ++ G D + + TGSGKTLA+L+P +
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 95 MLHSLKFKPRNGTG---------VIVITPTRELALQIFGVARELM-EFHSQTFGIVIGGA 144
+ L K R+ +++ P+REL +QI +L+ H + ++GGA
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGA 230
Query: 145 NRRQEADKLMKG-VNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMR 203
NR ++ + L K I++ TPGR+ + + K + LV+DE D +L F +++
Sbjct: 231 NRMRQEEALKKNKPAIVVGTPGRIAEISKGGK-LHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 204 QII-------------KILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDS---- 246
+I+ ++ +RQ++L SAT V A+ S P+ + +
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAK-SWSHEPVLVQANKVTPL 348
Query: 247 ------------EKDTSTADG------------LEQGYVVCESDKRXXXXXXXXKRNQKK 282
TS ADG L+ Y + + + +
Sbjct: 349 DTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQ 408
Query: 283 KVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAA 342
VI F++ +K L + E+HG + R+ +F N E +LV +++A
Sbjct: 409 SVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSA 468
Query: 343 RGLDIPAVDWIIQFDPPDDPRDYIHR 368
RGLD+ D ++ + P D Y HR
Sbjct: 469 RGLDVAECDLVVNLELPTDAVHYAHR 494
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 119 bits (298), Expect = 1e-26
Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 20/345 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
SF +L+L ++ + MGF + + +Q +P +LA ++++ +++G+GKT AF++
Sbjct: 92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADK 152
+ + P+ + ++PT ELALQ V ++ +F+ + N+ + K
Sbjct: 152 LSRVEPSDRYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 207
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI-GFEDEMRQIIKILPN 211
+ + I+I TPG +LD K K +K V+DEAD ++ G +D+ +I ++LP
Sbjct: 208 ISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 265
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES-DKRXX 270
+ Q +LFSAT V A+ + P P I + E++T D ++Q YV+C S D++
Sbjct: 266 -NCQMLLFSATFEDSVWKFAQ-KVVPDPNVIKLKREEET--LDTIKQYYVLCSSRDEKFQ 321
Query: 271 XXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNA 330
+ ++F + + + A L+ V L G+ ++R F
Sbjct: 322 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 381
Query: 331 ERGILVCTDVAARGLDIPAVDWIIQFDPP------DDPRDYIHRV 369
+ +LV T+V ARG+D+ V +I FD P D Y+HR+
Sbjct: 382 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 426
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 116 bits (291), Expect = 7e-26
Identities = 94/346 (27%), Positives = 166/346 (47%), Gaps = 25/346 (7%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
SF +L L+ +K I M F + + +Q R +P LL ++++ +++G+GKT AF +
Sbjct: 93 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 152
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADK 152
+ ++ P+ I + P+RELA Q V +E+ +F T +++ + + +
Sbjct: 153 LTRVNPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK--- 205
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI-GFEDEMRQIIKILPN 211
+++ TPG +LD L K + +K V+DEAD +L+ G D+ ++ + LP
Sbjct: 206 -QINAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP- 262
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVC--ESDKRX 269
+D Q +LFSAT V A+ + P ++ + + D ++Q Y+ C E+DK
Sbjct: 263 KDTQLVLFSATFADAVRQYAKKIV---PNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 319
Query: 270 XXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN 329
+I + + Y +L + V LHG + Q+R +F
Sbjct: 320 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE-GHEVSILHGDLQTQERDRLIDDFRE 378
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPD------DPRDYIHRV 369
+L+ T+V ARG+DIP V ++ +D P DP YIHR+
Sbjct: 379 GRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI 424
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 116 bits (290), Expect = 9e-26
Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 3/99 (3%)
Query: 165 GRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQT 224
GRLLDH+QNT GF++KNL+ LVIDEADRIL++GFE+E++QIIK+L RQ+MLFSATQT
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLTH-RQTMLFSATQT 90
Query: 225 TKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVC 263
KVEDLARISL+ PL++ D + T L G ++C
Sbjct: 91 QKVEDLARISLKKEPLYVGDDDDNANETVADL--GTLLC 127
Score = 65.1 bits (157), Expect = 2e-10
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 330 AERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
A+ G L+CTDVAARGLDI VD I+Q+DPPDDP++YIH V
Sbjct: 120 ADLGTLLCTDVAARGLDITEVDCIVQYDPPDDPKEYIHSV 159
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 115 bits (289), Expect = 1e-25
Identities = 107/400 (26%), Positives = 181/400 (44%), Gaps = 55/400 (13%)
Query: 6 RVRDAESEQDHA-ETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRT 64
R+ D + QD A E KD T S+++ L ++ + ++ + + +Q
Sbjct: 357 RLADCDVGQDRAVEIRNAEKDVRLT-----SWTNSGLHPTILETLKRIKYNNVRTIQGAM 411
Query: 65 IPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN------GTGVIVITPTREL 118
IP +L G DVLG A+T +GKT AF +P I+ + + + RN G +++ PTREL
Sbjct: 412 IPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTREL 471
Query: 119 ALQIFGVARELMEFHSQTFGIVI----GGANRRQEADKLMKGVNILIATPGRLLDHLQNT 174
A QI E + + Q I++ G ++R + +++ G +ILI T GR++D +
Sbjct: 472 AAQI----HEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKS 527
Query: 175 KGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED-------RQSMLFSATQTTKV 227
+ +L+ LV DEADR+L+ +D + + I+ + RQ+++ SAT V
Sbjct: 528 HISLL-HLRFLVFDEADRLLQDMKKDPLGHLGAIIKDAGFMESAATRQTIMTSATFNASV 586
Query: 228 --------------EDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
+++ +I L G L V+ E GL E + +
Sbjct: 587 MTVANELMKRLPGQDEMIKIVLANGRLSKRVNLE--FFECKGL------AEKNAKLREIL 638
Query: 274 XXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERG 333
+ K I+F+ + A L + LHG + Q R +F +
Sbjct: 639 KQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVN 698
Query: 334 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRD-----YIHR 368
+LV TD+ +RG+D+ +D +I FD PD D +IHR
Sbjct: 699 LLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHR 738
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 115 bits (288), Expect = 2e-25
Identities = 95/317 (29%), Positives = 155/317 (47%), Gaps = 15/317 (4%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGK-DVLGAAKTGSGKTLAFLIPAI 93
+F L ++AI +GF T +Q+ IP L K D++ A TGSGKTLA+LIP I
Sbjct: 18 TFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVI 77
Query: 94 EMLHSLKFK------PRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRR 147
E + L++K NGT I++ PTRELA Q++ V +L+ + S+ + ++
Sbjct: 78 ETI--LEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMS 135
Query: 148 QE--ADKLMKGVNILIATPGRLLDHLQNTKGFIFKN-LKALVIDEADRILEIGFEDEMRQ 204
+ LM I++ TPG+LLD LQ I N LK LV+DE D +L G++D++ +
Sbjct: 136 DSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNK 195
Query: 205 IIKILP-NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV-V 262
I + LP ++ Q+ L SAT ++ L + R P + + E+ + L Q YV V
Sbjct: 196 IGEYLPLKKNLQTFLMSATLNDDIQALKQKFCR-SPAILKFNDEEINKNQNKLLQYYVKV 254
Query: 263 CESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTN 322
E DK K K ++F+++ + ++ + L+ + R +
Sbjct: 255 SEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQH 314
Query: 323 TFFEFCNAERGILVCTD 339
+F +L+ TD
Sbjct: 315 IVDQFNKNVYQLLIATD 331
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 115 bits (287), Expect = 2e-25
Identities = 92/336 (27%), Positives = 159/336 (46%), Gaps = 26/336 (7%)
Query: 51 KMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKF---KPRNGT 107
++G +T +Q + +P + + L AA+TG GKT+ +L+P ++ L + + N
Sbjct: 126 ELGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTP 185
Query: 108 GVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRL 167
V+++TP RELA QI GV +L + + ++GG ++ + + V+IL+AT G L
Sbjct: 186 RVLILTPGRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGAL 245
Query: 168 LDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP-----NEDR--QSMLFS 220
L T + + ++ LV+DEAD +L+ F D++ ++ P ED Q +L S
Sbjct: 246 -SKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILAS 304
Query: 221 ATQTTKVEDLARISLRPGPLFINVDSEKDTSTA------DGLEQGYVVCESDKRXXXXXX 274
AT T ++ I+VD+ ++ + + Q ++ R
Sbjct: 305 ATMPTNTREILH-------KVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLS 357
Query: 275 XXKRNQKKK--VIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAER 332
K + K+ +IVF + + + + LN + L L+G + R F +F N
Sbjct: 358 LVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHC 417
Query: 333 GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
+L TDV +RGLD ++ FD P DYIHR
Sbjct: 418 DVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHR 453
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 113 bits (283), Expect = 6e-25
Identities = 102/352 (28%), Positives = 169/352 (47%), Gaps = 34/352 (9%)
Query: 4 NKRVRDAESEQDHAETETVVKDTATTGEVE----GSFSDLK-LSDGTMKAIGKMGFTQMT 58
+K DA + D + + V A+TG+VE SF K L + +M + T
Sbjct: 666 DKMFEDAVNNDDKIDFDQKV--VASTGKVEIPDMASFDGFKVLPQDLHDNLKRMKMNRPT 723
Query: 59 AVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG------VIVI 112
+Q + P++ G DV+ A TGSGKTLAFLIP + L K R+ T ++++
Sbjct: 724 PIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIV 783
Query: 113 TPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKL--MKGVNILIATPGRLLDH 170
PTREL Q F AR+L G+ GG +R L +NIL+AT GRL D
Sbjct: 784 APTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDF 843
Query: 171 LQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPNEDRQSMLFSA--TQTTKV 227
+ N +K +V+DEADR+++ I F +E+ +II +Q++LFSA ++ +
Sbjct: 844 V-NAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQS 902
Query: 228 EDLARISLRPGPLFINVDSEKDTSTADGLEQGYV-VCESDKRXXXXXXXXKRN------- 279
+DL + ++ G + VD K + + ++Q + V ++KR
Sbjct: 903 DDLPKF-VKEGYTMLQVD--KFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLP 959
Query: 280 ----QKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEF 327
+K+K ++F++S A L++ + + +H Q Q++R T +F
Sbjct: 960 DAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDF 1011
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 113 bits (282), Expect = 7e-25
Identities = 99/383 (25%), Positives = 178/383 (45%), Gaps = 42/383 (10%)
Query: 7 VRDAESEQDHAETETVVKDTATTGEVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIP 66
VR + QD + T D + F L LS ++ + GF + + VQ + IP
Sbjct: 37 VRILRTAQDLSSPRTRTGDVLLAEPAD--FESLLLSRPVLEGLRAAGFERPSPVQLKAIP 94
Query: 67 PLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQI---- 122
G D++ AK+G+GKT F A++ L T ++++ PTRE+A+QI
Sbjct: 95 LGRCGLDLIVQAKSGTGKTCVFSTIALDSL----VLENLSTQILILAPTREIAVQIHSVI 150
Query: 123 --FGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRL-----LDHLQNTK 175
G+ E +E H + IGG Q+ +L K +I + +PGR+ LD+L
Sbjct: 151 TAIGIKMEGLECH-----VFIGGTPLSQDKTRLKK-CHIAVGSPGRIKQLIELDYLNPG- 203
Query: 176 GFIFKNLKALVIDEADRILEIG-FEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARIS 234
+++ ++DEAD++LE G F++++ I LP +Q + SAT + +
Sbjct: 204 -----SIRLFILDEADKLLEEGSFQEQINWIYSSLP-ASKQMLAVSATYPEFLANALTKY 257
Query: 235 LRPGPLFINVDSEKDTSTADGLEQGYVVCES--------DKRXXXXXXXXKRNQKKKVIV 286
+R P F+ ++S + GL+Q Y V S +++ R + +V
Sbjct: 258 MRD-PTFVRLNSSDPSLI--GLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALV 314
Query: 287 FLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLD 346
F + + ++ A++L+ P + G Q +R + + + +L+ TD+ +RG+D
Sbjct: 315 FSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGID 374
Query: 347 IPAVDWIIQFDPPDDPRDYIHRV 369
V+ ++ D P D Y+HR+
Sbjct: 375 AEKVNLVVNLDVPLDWETYMHRI 397
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 112 bits (281), Expect = 1e-24
Identities = 96/351 (27%), Positives = 172/351 (48%), Gaps = 35/351 (9%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
SF +L+L +K I M F + + +Q + +P LL+ ++++G +++G+GKT AF +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHS--QTFGIVIGGANRRQEA 150
+ + + KP+ I + P+RELA QI V E+ ++ FGI
Sbjct: 175 LSRVDASVPKPQ----AICLAPSRELARQIMDVVTEMGKYTEVKTAFGI----------K 220
Query: 151 DKLMKGVNI----LIATPGRLLDHLQNTKGFIFKNLKALVIDEADRIL-EIGFEDEMRQI 205
D + KG I +I TPG ++D L + +++K V+DEAD +L + G D+ +I
Sbjct: 221 DSVPKGAKIDAQIVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRI 279
Query: 206 IKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES 265
+LP + Q +LFSAT + +VE A R P + + + + +G++Q Y+ C+S
Sbjct: 280 KHLLP-RNTQIVLFSATFSERVEKYAE---RFAPNANEIRLKTEELSVEGIKQLYMDCQS 335
Query: 266 DK-RXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
++ + + I+F ++ + A + V L G + +R
Sbjct: 336 EEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIM 395
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPP------DDPRDYIHRV 369
F +LV T+V ARG+D+ V+ ++ +D P DP+ Y+HR+
Sbjct: 396 DSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRI 446
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 110 bits (276), Expect = 4e-24
Identities = 99/341 (29%), Positives = 151/341 (44%), Gaps = 57/341 (16%)
Query: 73 DVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEF 132
D+L A TGSGKTLA+ IP ++ L + N I+I PT+ L Q++ +L +
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQI---NRLRCIIIVPTKLLINQVYTTLTKLTQG 285
Query: 133 HSQTFGIVIGGANRRQEADKLMK-GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEAD 191
S I + + E KL +ILI TPGRL+DHL N K KNLK L+IDEAD
Sbjct: 286 TSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHL-NMKSINLKNLKFLIIDEAD 344
Query: 192 RILEIGFEDEMRQIIKILPNEDRQS-------MLFSATQTTKVEDLARISLRPGPLFI-- 242
R+L F+ +++ L + + M+FSAT TT E L ++L LF+
Sbjct: 345 RLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQ 404
Query: 243 --------------NVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFL 288
N++ S L Y +C+ K+++F+
Sbjct: 405 TDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAA---------KILIFV 455
Query: 289 SS--------------CNSVKYYAELLNYIDLPV----LELHGKQKQQKRTNTFFEFCNA 330
S C S + L N +L V + + + + K+ F +
Sbjct: 456 KSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSE 515
Query: 331 ERG--ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
G IL+ TD+ +RG+DI + +I +DPP + Y+HRV
Sbjct: 516 SAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRV 556
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 110 bits (276), Expect = 4e-24
Identities = 88/353 (24%), Positives = 165/353 (45%), Gaps = 29/353 (8%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
++ D L + +K I +GF + +Q I P++ G+D+ A++G+GKT AF + A++
Sbjct: 39 TWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ 98
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM 154
+ ++ T ++V+ TRE+A Q +L F ++ GG+ + L
Sbjct: 99 ICD----MSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALE 154
Query: 155 KGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 214
K +I++ TPGR ++H+ N N+K VIDEAD +L+ GF+++++ I + + N+D
Sbjct: 155 KKPHIVVGTPGR-VEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDE 213
Query: 215 -QSMLFSATQTTKVEDLARISLRPGPLFIN---VDSEKDTSTADGLEQGYVVCESD---- 266
Q +FSAT E+ R+S + IN +D + T G+ Q ++ +
Sbjct: 214 VQIAMFSATYD---EEELRVS---EEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFR 267
Query: 267 --------KRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQ 318
+ ++ + + IVF++S + + L + + + Q
Sbjct: 268 KGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAELTQA 327
Query: 319 KRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPR--DYIHRV 369
+R T F L+ + + +RG+DI + + D P R YIHR+
Sbjct: 328 ERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRI 380
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 110 bits (274), Expect = 6e-24
Identities = 109/455 (23%), Positives = 194/455 (41%), Gaps = 55/455 (12%)
Query: 6 RVRDAESEQDHAETETVVKDTATTGEVEG---SFSDLKLSDGTMKAIGKMGFTQMTAVQT 62
R++ +++E+ E++V + E +F+D L + +K+IG++G+ + VQ
Sbjct: 58 RMKKSQAEKRQKLMESLVGPQVDEMDFEPEHKTFADFGLDERILKSIGELGWEKANQVQE 117
Query: 63 RTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--HSLKFKPRNGTGVIVITPTRELAL 120
I L K+++G A+TGSGKT AFLIP ++ L S G ++I PT+EL
Sbjct: 118 SVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELIT 177
Query: 121 QIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFK 180
QI+ + +L + I + N + + L ++++ TPG+LL + + +
Sbjct: 178 QIYKLFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLL-RMCSLRPEYCT 236
Query: 181 NLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPL 240
+ LV+DEAD +L G+E+EM +I LP Q ++ SAT + L ++ + GP+
Sbjct: 237 LVSYLVMDEADLLLSFGYEEEMIKIRSKLP-PTYQCLMTSATLKDDMTTLKKLFM-TGPV 294
Query: 241 FINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQ--KKKVIVFLSSCNSVKYYA 298
+E D +D L Q + C SD+ + + + I+F+++ +
Sbjct: 295 ITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVAMFKLKLIVGRSILFVNTIDRCYKLM 354
Query: 299 ELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVA----------------- 341
+L L L+ R + +F I++ +DV+
Sbjct: 355 LILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDE 414
Query: 342 ---------------------ARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXXXXXXX 380
+RG+D V ++ FD P+ YIHRV
Sbjct: 415 KPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRV-GRTARGFNKG 473
Query: 381 XSLMFLTPTELGFLRYL------KAAKVPLNEYEF 409
+L F P+E L + + + L YEF
Sbjct: 474 TALSFCIPSERAHLEQIQEEINQQMGRKVLQPYEF 508
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 107 bits (268), Expect = 3e-23
Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 63/338 (18%)
Query: 40 KLSDGTMKAIG-------KMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPA 92
K+ G+ K +G + + T +Q +TIP +L + ++G +TGSGKTL +LIPA
Sbjct: 6 KIKGGSFKTMGLDYRLLRNILYEGPTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPA 65
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADK 152
I+ S G +VI PT+EL +Q V + L A +EA K
Sbjct: 66 IQRAIS-------GEKTLVIVPTKELVIQARRVLKRL--------------ARGIEEAWK 104
Query: 153 LMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQII-KILPN 211
L++ I TPG++ +G + LV+DE DRILE E ++ + +I +
Sbjct: 105 LIE-----ICTPGKI-------EGM---SADMLVVDEIDRILE---EPSLKSVFDRINES 146
Query: 212 EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXX 271
Q + FSAT L PL + V E +T + ++ + S+ +
Sbjct: 147 LSCQKVFFSAT------------LPDHPLNMKV-VEIETRINETVKHFFFYIPSESKEAA 193
Query: 272 XXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 331
+ +K IVF ++ +V+ E+LN + ++ + R F +F ++
Sbjct: 194 LLRILDKT--RKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSK 251
Query: 332 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
ILV TDVAARGLDIP +D ++ +D D+ R ++HRV
Sbjct: 252 FSILVVTDVAARGLDIPYLDTVVNYDLCDE-RTFLHRV 288
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 106 bits (265), Expect = 7e-23
Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 20/328 (6%)
Query: 52 MGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGV 109
MGF + + +Q +P +LA ++++ +++G+GKT AF++ + +++L+ P+
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ----C 56
Query: 110 IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLD 169
+ + PT ELALQ V ++ +F + NR + K I+I TPG +LD
Sbjct: 57 LCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK--QIIIGTPGTVLD 114
Query: 170 HLQNTKGFIFKNLKALVIDEADRILEI-GFEDEMRQIIKILPNEDRQSMLFSATQTTKVE 228
K ++ V+DEAD +++ GF D +I + LP+E Q +LFSAT V
Sbjct: 115 WCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSEC-QMLLFSATFEDSVW 173
Query: 229 DLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVF 287
A + P P I + K+ T + + Q YV+CE K + + I+F
Sbjct: 174 HFAE-RIIPDPNVIKL--RKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIF 230
Query: 288 LSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDI 347
+ + K+ + V L G+ ++R + F + + +L+ T+V ARG+D+
Sbjct: 231 CQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDV 290
Query: 348 PAVDWIIQFDPP------DDPRDYIHRV 369
V ++ FD P D Y+HR+
Sbjct: 291 KQVTIVVNFDLPVKQGEEPDYETYLHRI 318
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 105 bits (263), Expect = 1e-22
Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 20/328 (6%)
Query: 52 MGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGV 109
MGF + + +Q +P +LA ++++ +++G+GKT AF++ + +++L+ P+
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ----C 56
Query: 110 IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLD 169
+ + PT ELALQ V ++ +F + NR + K I+I TPG +LD
Sbjct: 57 LCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK--QIIIGTPGTVLD 114
Query: 170 HLQNTKGFIFKNLKALVIDEADRILEI-GFEDEMRQIIKILPNEDRQSMLFSATQTTKVE 228
K ++ V+DEAD +++ GF D +I + LP+E Q +LFSAT V
Sbjct: 115 WCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSEC-QMLLFSATFEDSVW 173
Query: 229 DLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-RXXXXXXXXKRNQKKKVIVF 287
A + P P I + K+ T + + Q YV+CE K + + I+F
Sbjct: 174 HFAE-RIIPDPNVIKL--RKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIF 230
Query: 288 LSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDI 347
+ + K+ + V L G+ ++R + F + + +L+ T+V ARG+D+
Sbjct: 231 CQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDV 290
Query: 348 PAVDWIIQFDPP------DDPRDYIHRV 369
V ++ FD P D Y+HR+
Sbjct: 291 KQVTIVVNFDLPVKQGEEPDYETYLHRI 318
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 105 bits (262), Expect = 2e-22
Identities = 88/333 (26%), Positives = 167/333 (49%), Gaps = 23/333 (6%)
Query: 39 LKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHS 98
++L + ++ I GF + +A+Q + P GKDV ++ GSGKT +I I++L
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKT---VISLIDILQG 57
Query: 99 LKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGI--VIGGANRRQEADKLMKG 156
+ + + VI++ P R +A + A E ++ + + G + E DK+
Sbjct: 58 IDCEDAH-LQVILLAPQRGMAQR----AHEQLKSLGRNLNVNATCLGFDTTAENDKIS-- 110
Query: 157 VNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQS 216
++L+ TP L ++ + +K V+DEAD +L GF+D++ ++ + +P +D Q
Sbjct: 111 -HVLMGTPKDFLSNIPSDT----SRIKMFVLDEADEMLSKGFKDQIYEVFRSMP-QDVQV 164
Query: 217 MLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-RXXXXXXX 275
+L SAT ++V D+ +R P+ I V +KD T +G+ Q Y+ + D+ +
Sbjct: 165 VLLSATMPSEVLDVTNRFMR-DPIRILV--KKDELTLEGIRQFYINVQKDEWKFNCLCDL 221
Query: 276 XKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGIL 335
K +++ + ++F ++ V E L I + V HG + +R + +F + +L
Sbjct: 222 LKTSRETQALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVL 281
Query: 336 VCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
V TD+ ARG++I II +D + +Y+ R
Sbjct: 282 VTTDLMARGMNI-RKSLIINYDVSGNMENYMLR 313
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 105 bits (262), Expect = 2e-22
Identities = 100/352 (28%), Positives = 164/352 (46%), Gaps = 27/352 (7%)
Query: 36 FSDLKLSDGTMKAIG-KMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
F DL LS MK + +M F + + +Q ++P ++ K ++ A GSGKT F++
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGM 152
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADK 152
+ + +P+ + I PTRELA Q V +++ +F T + + + R A
Sbjct: 153 LSRVDPTLREPQ----ALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAAT 208
Query: 153 LMKGVN--ILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEI-GFEDEMRQIIKIL 209
V+ ++I TPG L + K +LK LV DEAD +L GF D+ +I+K +
Sbjct: 209 RGAPVSAHVVIGTPGTLKKWMA-FKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDI 267
Query: 210 P--NEDRQSMLFSATQTTKVED-LARISLRPGPLFINVDSEKDTSTADGLEQGYVVC--E 264
N + Q +LFSAT V+D +AR P LF+ +++ D ++Q VVC E
Sbjct: 268 GRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFV----KREDLALDSVKQYKVVCPKE 323
Query: 265 SDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
+K + + I+F+ + S + + L + V +HG + R
Sbjct: 324 QNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIV 383
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPP-------DDPRDYIHRV 369
EF +L+ TDV ARG D V+ ++ ++ P D Y+HRV
Sbjct: 384 KEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRV 435
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 105 bits (261), Expect = 2e-22
Identities = 96/318 (30%), Positives = 158/318 (49%), Gaps = 29/318 (9%)
Query: 58 TAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRE 117
T VQ IP +LAG+ V ++TGSGKTL++++P I +L S ++VI PTRE
Sbjct: 80 TDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLLES------GDKRLLVIVPTRE 133
Query: 118 LALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLD--HLQNTK 175
L Q+ V R+ E + I G + + ++ + ++ I+TPGRL + L++
Sbjct: 134 LVSQVGQVFRKFSEGLLRIVEIT-GEVSIESQRLQVSRPFDVAISTPGRLRELLELKSIG 192
Query: 176 GFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISL 235
GF + +V+DEADR+++ ++ I++ + E + FSAT E +
Sbjct: 193 GFEY-----VVVDEADRLMQHDIRSDVTFILERMKPE--VASFFSATP---FEWSGGTRI 242
Query: 236 RPGPLFINVDSEKDTSTADGLEQGYVVCE---SDKRXXXXXXXXKRN--QKKKVIVFLSS 290
G + + D E+ + E+ V+ E S + RN + KK+IVF
Sbjct: 243 LVGNVSVGRDVEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGVDRNGLEVKKIIVF--- 299
Query: 291 CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAV 350
CNS++ E L+ +L LH ++ Q+R E ER +L+ TD+ RG+DI V
Sbjct: 300 CNSIRT-CENLHKRFRQLLVLHSRRTMQER-KAVIEALEGERAVLIATDLGGRGIDIKDV 357
Query: 351 DWIIQFDPPDDPRDYIHR 368
D ++ +D P Y+HR
Sbjct: 358 DLVVNYDLPRAVDGYVHR 375
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 102 bits (254), Expect = 1e-21
Identities = 84/297 (28%), Positives = 137/297 (45%), Gaps = 10/297 (3%)
Query: 73 DVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEF 132
D+L AK+G+GKTL F + A+E L S + +++TPTRE+++QI R++
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQK----VIVTPTREISVQIKETVRKVAPT 106
Query: 133 HSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADR 192
++T V G A++ D I+I TPGR+ L ++ V+DEAD+
Sbjct: 107 GARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIA-QLVKLGAMNMSHVDFFVLDEADK 165
Query: 193 ILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTST 252
+++ F D++ II LP + RQ +FSAT +++L LR L V D
Sbjct: 166 LMDEVFRDDINIIINSLP-QIRQVAVFSATYPRNLDNLLSTFLRDAAL---VRFNADDVQ 221
Query: 253 ADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELH 312
G++Q YVV + K + + +VF + + A L L V +
Sbjct: 222 LFGIKQ-YVVAKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVS 280
Query: 313 GKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
Q+ R + ILV +D+ ARG+D V+ ++ D + Y HR+
Sbjct: 281 SAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRI 337
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 102 bits (254), Expect = 1e-21
Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 17/333 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
SF +L+L +KA+ M F T +Q +P LL +++ A++G+GKT AF++
Sbjct: 210 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 269
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEF--HSQTFGIVIGGANRRQEA 150
+ + P+ I + PT ELA QI V ++ +F + + + GG
Sbjct: 270 LCRIDVNLMCPQ----CICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRG 325
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEAD-RILEIGFEDEMRQIIKIL 209
KL + I+I TPG D+LQ K ++ LV+DEAD I GF D I ++
Sbjct: 326 RKLTE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMV 383
Query: 210 PN--EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES-D 266
+ + QSMLFSAT V + A ++ I V +++ ++Q YV C D
Sbjct: 384 EDASDSVQSMLFSATYDEPVINFATKIIKNA---IVVMLKREEQALPNIKQFYVQCACRD 440
Query: 267 KRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFE 326
+ ++F + SV + E + V LHG +R +T
Sbjct: 441 SKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIH 500
Query: 327 FCNAERGILVCTDVAARGLDIPAVDWIIQFDPP 359
F + +L+ T+V ARG+D+ V +I +D P
Sbjct: 501 FKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 533
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 102 bits (254), Expect = 1e-21
Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 17/333 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
SF +L+L +KA+ M F T +Q +P LL +++ A++G+GKT AF++
Sbjct: 235 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 294
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEF--HSQTFGIVIGGANRRQEA 150
+ + P+ I + PT ELA QI V ++ +F + + + GG
Sbjct: 295 LCRIDVNLMCPQ----CICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRG 350
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEAD-RILEIGFEDEMRQIIKIL 209
KL + I+I TPG D+LQ K ++ LV+DEAD I GF D I ++
Sbjct: 351 RKLTE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMV 408
Query: 210 PN--EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES-D 266
+ + QSMLFSAT V + A ++ I V +++ ++Q YV C D
Sbjct: 409 EDASDSVQSMLFSATYDEPVINFATKIIKNA---IVVMLKREEQALPNIKQFYVQCACRD 465
Query: 267 KRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFE 326
+ ++F + SV + E + V LHG +R +T
Sbjct: 466 SKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIH 525
Query: 327 FCNAERGILVCTDVAARGLDIPAVDWIIQFDPP 359
F + +L+ T+V ARG+D+ V +I +D P
Sbjct: 526 FKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 558
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 102 bits (254), Expect = 1e-21
Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 17/333 (5%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAG--KDVLGAAKTGSGKTLAFLIPA 92
SF +L+L +KA+ M F T +Q +P LL +++ A++G+GKT AF++
Sbjct: 619 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 678
Query: 93 IEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEF--HSQTFGIVIGGANRRQEA 150
+ + P+ I + PT ELA QI V ++ +F + + + GG
Sbjct: 679 LCRIDVNLMCPQ----CICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRG 734
Query: 151 DKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEAD-RILEIGFEDEMRQIIKIL 209
KL + I+I TPG D+LQ K ++ LV+DEAD I GF D I ++
Sbjct: 735 RKLTE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMV 792
Query: 210 PN--EDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCES-D 266
+ + QSMLFSAT V + A ++ I V +++ ++Q YV C D
Sbjct: 793 EDASDSVQSMLFSATYDEPVINFATKIIKNA---IVVMLKREEQALPNIKQFYVQCACRD 849
Query: 267 KRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFE 326
+ ++F + SV + E + V LHG +R +T
Sbjct: 850 SKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIH 909
Query: 327 FCNAERGILVCTDVAARGLDIPAVDWIIQFDPP 359
F + +L+ T+V ARG+D+ V +I +D P
Sbjct: 910 FKRGDFKVLITTNVFARGIDVAQVSVVINYDLP 942
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 99.8 bits (247), Expect = 9e-21
Identities = 76/279 (27%), Positives = 130/279 (46%), Gaps = 19/279 (6%)
Query: 122 IFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKN 181
I G R++ E VIGG +R +L+ G I+IATPG L+D L+N + +
Sbjct: 348 IIGRDRQVWEAARYPTVAVIGGISREDWGFRLLMGCEIVIATPGHLIDVLEN-RYLVLSC 406
Query: 182 LKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLF 241
+V+DEADR++++GFE ++++I++ +P S + + ED P +
Sbjct: 407 CTYVVLDEADRMIDVGFEPDVQKILEHMPQ--------SEARHDESED-------PEKML 451
Query: 242 INVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELL 301
N +S K + +EQ +++ ES+KR K+ + +F++ A+ L
Sbjct: 452 ANFESGK-RKPHERVEQVFLMSESEKRKKLLEIL-KQGFDPAITIFVNQKKGCDVLAKSL 509
Query: 302 NYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDD 361
+ LHG + Q++R + +LV TDVA G+DI V ++ +D +
Sbjct: 510 EKMGYNACTLHGGKGQEQREFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKN 569
Query: 362 PRDYIHRVXXXXXXXXXXXXSLMFLTPTELGFLRYLKAA 400
DYIHR+ ++ FLT + LK A
Sbjct: 570 IDDYIHRI-GRMGQAGKSGVAITFLTKEDSAVFYELKQA 607
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 98.6 bits (244), Expect = 2e-20
Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 185 LVIDEADRILEIGFEDEMRQIIKI--LPN-EDRQSMLFSATQTTKVEDLARISLRPGPLF 241
LV+DEADR+L++GFE ++RQI++ +P+ E+R + +FSAT +++ LA+ L+ +F
Sbjct: 14 LVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVF 73
Query: 242 INVDSEKDTSTADGLEQGYVVCESD-KRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAEL 300
+ V + ST++ + Q V E D KR +VF+ + A
Sbjct: 74 LAVG--RVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYY 131
Query: 301 LNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPD 360
LN + V+ +HG KQ +R F ILV T VAARGLDIP V +I +D P
Sbjct: 132 LNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPS 191
Query: 361 DPRDYIHRV 369
D +Y+HR+
Sbjct: 192 DVDEYVHRI 200
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 97.1 bits (240), Expect = 6e-20
Identities = 65/201 (32%), Positives = 111/201 (54%), Gaps = 11/201 (5%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
F D L ++AI GF + VQ IP + G DVL AK+G GKT F++ ++
Sbjct: 46 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105
Query: 96 LHSLKFKPRNG-TGVIVITPTRELALQIFGVARELMEF-HSQTFGIVIGGANRRQEADKL 153
+ +P NG V+V+ TRELA QI ++ S + GG + +++ + L
Sbjct: 106 I-----EPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL 160
Query: 154 MKGV-NILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPN 211
K ++++ TPGR+L ++N + F KN+K V+DE D++LE + ++++I ++ P+
Sbjct: 161 KKNCPHVVVGTPGRILALVRN-RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 219
Query: 212 EDRQSMLFSATQTTKVEDLAR 232
E +Q M+FSAT + + + R
Sbjct: 220 E-KQCMMFSATLSKDIRPVCR 239
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 96.3 bits (238), Expect = 9e-20
Identities = 55/120 (45%), Positives = 78/120 (64%), Gaps = 3/120 (2%)
Query: 117 ELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKG 176
E+ Q G+A + H + G++IGG + EA+++ +NIL+ PGRLL H+ T
Sbjct: 94 EIQKQTIGLALQGKN-HDFSAGLIIGGKYLKHEAERI-NNINILVCAPGRLLQHMDETVS 151
Query: 177 FIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLR 236
F L LV+DEA RIL++GF D M II+ LP + RQ++LFSATQT V+DLAR+SL+
Sbjct: 152 FHATALLMLVLDEAYRILDVGFADTMNAIIENLPKK-RQTLLFSATQTISVKDLARLSLK 210
Score = 75.1 bits (183), Expect = 2e-13
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 316 KQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVXXXXXX 375
+Q +R + EF +L +DVAARGLD PAV+W +QFD P+D YIHR
Sbjct: 217 QQMRRMEVYNEFVRKRAAVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHR-AGRTAR 275
Query: 376 XXXXXXSLMFLTPTELGFLRYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIA 435
+L+ L +E ++ L KVP+ E + K+ ++Q +LE + L + A
Sbjct: 276 YKEDGEALLILLASEKAIVQQLLQKKVPIKEIKINPEKLIDIQKKLESFSAEDQDLKERA 335
Query: 436 K 436
+
Sbjct: 336 Q 336
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 94.0 bits (232), Expect = 5e-19
Identities = 87/343 (25%), Positives = 151/343 (43%), Gaps = 47/343 (13%)
Query: 66 PPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGV 125
PP L +DV AA TGSGKT+ +++P + + S KP +++ P + L QI
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGS---KPSKILQAVILVPVQTLVAQIVDE 310
Query: 126 ARELMEFHSQTFGIVIGGANR-RQEADKLMKGV-NILIATPGRLLDHLQNT--KGFIFKN 181
+ + + + GAN +EA +L N+++ATP RL+ HL +
Sbjct: 311 FKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSK 370
Query: 182 LKALVIDEADRILEIGFEDEMRQIIKILPNEDR--------------QSMLFSATQTTKV 227
L+ L++DEADR+ ++ E+ + + + +R Q ++ SAT + V
Sbjct: 371 LRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDV 430
Query: 228 EDLARISLRPGPLF-INVDSEKDTSTA--------------DGLEQGYVVCESDKRXXXX 272
E+L +L LF S KD ++ + VV +
Sbjct: 431 EELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLAV 490
Query: 273 XXXXKRNQKKKVIVFLSSCNSVKYYAELLNY-------IDLPVLELHGKQKQQKRTNTFF 325
RN+ + ++F++ +S A +L +D +L GK +R
Sbjct: 491 YQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGK----RRYKMLE 546
Query: 326 EFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHR 368
+F E +L+C+DV ARG D+ VD +I ++ P D + ++HR
Sbjct: 547 KFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHR 589
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 85.1 bits (209), Expect = 2e-16
Identities = 74/291 (25%), Positives = 140/291 (47%), Gaps = 22/291 (7%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
E+ SF D+ L + + I G + +A+Q R I P + G V+ A++G+GK F
Sbjct: 74 EIVDSFDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATF-- 131
Query: 91 PAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
+I +LH ++ + + T+ L ++ + M+ T IGG N E
Sbjct: 132 -SISILHQIE---------LDVKATQALIQKVVIALGDHMDASCHT---CIGGTNVHAEV 178
Query: 151 DKL-MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKIL 209
KL M+ +I++ TPG + D L N + K +K V+D+ D +L GF+D++ I + L
Sbjct: 179 QKLQMEAPHIIVGTPGHVFDML-NWRYLSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQEL 237
Query: 210 PNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDK-R 268
N + Q +L SAT + V ++ + +R I + +K+ T +G+ Q Y+ E ++ +
Sbjct: 238 -NSNTQVVLPSATMPSDVLEVTKKFMRE---HIWILVKKEELTLEGICQFYINMEREEWK 293
Query: 269 XXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 319
+ + ++FL++ + + ++ D V +HG Q++
Sbjct: 294 LDTLGDLYETLTIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 83.2 bits (204), Expect = 8e-16
Identities = 78/325 (24%), Positives = 141/325 (43%), Gaps = 57/325 (17%)
Query: 100 KFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFG---IVIGGANRRQEADKLMKG 156
KF P N +++ P+RELA Q ++ ++ ++IGG R + L G
Sbjct: 281 KFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG 339
Query: 157 VNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP---NED 213
V+I++ TPGR LD L +T ++ LV+DEAD +L G+ D + ++ +P ++
Sbjct: 340 VDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG 398
Query: 214 RQSMLFSATQTTKVEDLARIS--LRPGPLFINV---DSEKDT------------------ 250
++ + + T D+ ++S + P ++++ DS DT
Sbjct: 399 KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWER 458
Query: 251 ---------------STADGLEQGYVVCESDK--RXXXXXXXXKRNQKKKVIVF----LS 289
+T G + E+ K + K ++ + I+F +
Sbjct: 459 LGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID 518
Query: 290 SCNSVKYYAELLNYID-----LPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARG 344
N +Y+ + D + LHG +K +R F + L+CTDVAARG
Sbjct: 519 CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG 578
Query: 345 LDIPAVDWIIQFDPPDDPRDYIHRV 369
+DI V ++I PD+ ++Y+HR+
Sbjct: 579 IDIHGVPYVINVTLPDEKQNYVHRI 603
Score = 51.2 bits (121), Expect = 3e-06
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
+FS++ + +A+ +M + T +Q +IP +L G DVL AA+TGSGKT AF IP I+
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 95 MLH 97
+++
Sbjct: 63 IVY 65
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 83.2 bits (204), Expect = 8e-16
Identities = 73/314 (23%), Positives = 141/314 (44%), Gaps = 51/314 (16%)
Query: 105 NGTGVIVITPTRELALQIFGVARELMEFHSQTFGI----VIGGANRRQEADKLMKGVNIL 160
N I++ P+RELA Q + E ++H + +IGG ++ +LM+G +I+
Sbjct: 285 NAPQAIIMEPSRELAEQTYNQI-EKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIV 343
Query: 161 IATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILP---NEDRQSM 217
+ TPGRL + + N+ + + + V+DEAD +L+ G+ + + ++ K +P ++ R+
Sbjct: 344 VGTPGRL-EEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQ 402
Query: 218 LFSATQTTKVEDLARIS--LRPGPLFIN-----------------VDSEKDTST------ 252
+ + T ++ +++ L P +++ VD + DT+
Sbjct: 403 MVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQP 462
Query: 253 --ADGLEQGYVVCESDKRXXXXXXXXK------------RNQKKKVIVFLSS---CNSVK 295
DG+ V + K ++ + I+F + C++++
Sbjct: 463 IGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLE 522
Query: 296 YYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQ 355
+ + LHG +K Q+R F + L+CTDVAARGLDI + ++I
Sbjct: 523 RFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMIN 582
Query: 356 FDPPDDPRDYIHRV 369
PDD +Y+HR+
Sbjct: 583 VTLPDDKTNYVHRI 596
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 81.3 bits (199), Expect = 3e-15
Identities = 70/270 (25%), Positives = 114/270 (41%), Gaps = 50/270 (18%)
Query: 105 NGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATP 164
+G +++TPTRELA+Q + A + + GG ++ L +G I++ TP
Sbjct: 115 DGPIAVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTP 174
Query: 165 GRLLDHLQNTKGFI--FKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSAT 222
GR++D L G + + + LV+DEADR+ GFE ++ + + + +++ +
Sbjct: 175 GRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQVGGKSVVCSDITQNAVICAEH 234
Query: 223 QT-TKVEDLARISLRPGPLFINVD-SEKDTSTADGL-EQGYVVCESDKRXXXXXXXXKRN 279
Q K+ +L + G + VD EK D L GY
Sbjct: 235 QKFLKLLELLGMYYDEGSSIVFVDKQEKADDIVDQLMRTGY------------------- 275
Query: 280 QKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTD 339
NS V LHG Q R ++ +F +LV T
Sbjct: 276 ------------NS--------------VASLHGGIDQHDRDSSIADFKTGVIKVLVATS 309
Query: 340 VAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
VAARGLD+ + ++ +D P+ DY+HRV
Sbjct: 310 VAARGLDVKNLILVVNYDCPNHYEDYVHRV 339
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 78.6 bits (192), Expect = 2e-14
Identities = 73/345 (21%), Positives = 153/345 (44%), Gaps = 41/345 (11%)
Query: 46 MKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLK--FKP 103
++ + G+ T +Q +T GK+++ + G+GKTL +L+P I +H+ + +
Sbjct: 44 LQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQH 103
Query: 104 RNGTGVIVITPTRELALQIFGVARELMEFHSQ---TFGIVIGGANRRQEADKLMKGVNIL 160
+ G V+++ RE A+ V RE++ + + ++G + + A+ ++L
Sbjct: 104 KKGPIVLILVDCREAAVM---VQREVLYYTNPLELRTHCLLGNSQWQGHAE-----CDLL 155
Query: 161 IATPGRLLDHLQNTKGFI-FKNLKALVIDEADRILEIGFEDEM-RQIIKILP-------- 210
+A+ GRLL + N K + + LV+D DR++++G E + R + ++ P
Sbjct: 156 VASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRPHAQLIVSS 215
Query: 211 -----NEDRQSMLFSATQTT-KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCE 264
N R + F T +V ++ I +R + V+ S + L +
Sbjct: 216 TSWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEVVNGLSKVERLMK------ 269
Query: 265 SDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTF 324
+ KV++++ V+ +L+ +P +HG + Q+
Sbjct: 270 -----ELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNC-VPCEGIHGGRTAQENQGII 323
Query: 325 FEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+F I+V T + + LD+P + ++I +D PD+ Y+ R+
Sbjct: 324 HDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRM 368
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 76.6 bits (187), Expect = 8e-14
Identities = 72/313 (23%), Positives = 132/313 (42%), Gaps = 32/313 (10%)
Query: 81 GSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHS------ 134
GSGKTL +L+ ++ SL R+ +++ PTREL +Q+ VAR L
Sbjct: 81 GSGKTLTYLL----LIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGC 136
Query: 135 QTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRIL 194
++ GG RR ++ + IL+AT L H+ F +++ LV+DE D +
Sbjct: 137 TVMALLDGGTLRRHKSWLKAEPPAILVATVASLC-HMLEKHIFRIDSVRVLVVDEVDFLF 195
Query: 195 EIGFE-DEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRP-----GPLFINVDSEK 248
+ +R+++ + D++ +F++ + + ++ + ++V +
Sbjct: 196 YSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIM 255
Query: 249 DTSTADGLEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAE-------LL 301
L +V+CE + + + + I+F+ + A L+
Sbjct: 256 PMPLC--LLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLM 313
Query: 302 NYI------DLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQ 355
++ L +L L G R + E +LV TD+AARG+D+P I
Sbjct: 314 EFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFN 373
Query: 356 FDPPDDPRDYIHR 368
FD P DY+HR
Sbjct: 374 FDLPQTVTDYLHR 386
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 68.2 bits (165), Expect = 3e-11
Identities = 54/196 (27%), Positives = 98/196 (49%), Gaps = 20/196 (10%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
S+ L LSD A+ GF + + Q IP +L+GKDV+ AA+TGSGKT +L P I+
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 95 ML------------HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIG 142
L F +N + +++ P L Q+ + L++ V
Sbjct: 141 QLTNTALDSEVTNREERPFPLKNIS--LILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEA 198
Query: 143 GANRRQEADKLMKGVNILIATPGRLLDHLQ---NTKGFIFKNLKALVIDEADRILEIGFE 199
+ D+L +I+++TP LL++++ N + + +K +V DEAD +L F+
Sbjct: 199 VCGSQGWPDRL---PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQ 255
Query: 200 DEMRQIIKILPNEDRQ 215
+++ ++I +L +++Q
Sbjct: 256 NQIIRLINMLRFDEKQ 271
Score = 59.7 bits (143), Expect = 1e-08
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 256 LEQGYVVCESDKRXXXXXXXXKRNQK---KKVIVFLSSCNSVKYYAELLNYIDLPVLELH 312
L+Q +V D + K N ++ +VF ++ +V+ A++L + H
Sbjct: 396 LKQKWVEVTVDSQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYH 455
Query: 313 GKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
K +R N +F G+ VCTD AARG+D+P V +IQ D D++HR+
Sbjct: 456 KNHKLDERANILADF-RETGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRI 511
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 67.8 bits (164), Expect = 4e-11
Identities = 77/318 (24%), Positives = 123/318 (38%), Gaps = 67/318 (21%)
Query: 110 IVITPTRELALQIFGVARELMEFHSQTFGIVI-----------GGANRRQEADKLMKGVN 158
+++ PTREL Q F + QTF V+ G N Q L G +
Sbjct: 309 VILEPTRELVQQTFQ--------NIQTFASVLDSPKIRCVTLAAGENMNQILRTLETGCD 360
Query: 159 ILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRIL--EIGFEDEMRQIIKILP-----N 211
I++ TP R+ D L +T KNL+ +VIDE D+ L + ++ I ++LP
Sbjct: 361 IVVGTPSRVFD-LIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDG 419
Query: 212 EDRQSMLFSAT-----------------QTTKVEDLARISLRPGPLFINVDSEKDTSTAD 254
RQ + SAT Q ++ +S + +VD+ +D
Sbjct: 420 TRRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIR 479
Query: 255 GLEQGYVVCE-------------SDKRXXXXXXXXKRN----------QKKKVIVFLSSC 291
+ Q + + +DK + Q K IVF +
Sbjct: 480 QMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIVFCRTK 539
Query: 292 NSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVD 351
+ L +L LHG + ++R ++ F LVC+DV ARGLD+ V
Sbjct: 540 QQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGVP 599
Query: 352 WIIQFDPPDDPRDYIHRV 369
++I PD+ Y+HR+
Sbjct: 600 FVISVTLPDEKSMYVHRI 617
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 66.2 bits (160), Expect = 1e-10
Identities = 85/360 (23%), Positives = 153/360 (41%), Gaps = 59/360 (16%)
Query: 57 MTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKP-------RNGTGV 109
+ AVQ ++I + + +L A TG GKT AFLIPAIE+ +L+ +P +
Sbjct: 115 LNAVQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEI--ALRERPLLTNISTTPSPTI 172
Query: 110 IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKG-------VNILIA 162
+++ T L Q+F L+ I I R + +KL+ +I
Sbjct: 173 LILANTNSLVEQLFNRCEVLLGLIDMEDIIPI----RDIKIEKLVASYQFTKDQCDIAFC 228
Query: 163 TPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIG-FEDEMRQIIKILPNE---DRQSML 218
T G+L +++ K + NLK +++DE+D++++I F +++ ++ L + + QS
Sbjct: 229 TMGKLKASIED-KTILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCF 287
Query: 219 FSATQTTKVEDLARISLR------------------PGPL---FINVDSEK--DTSTADG 255
FSA+ + ++ R PG + I + ++ D +
Sbjct: 288 FSASHNRNEDGSIALTSRQSRMLGENPWSLIHCPRLPGYITQRVIRIGGQRVNDIHSNPW 347
Query: 256 LEQGYVVCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAEL------LNYIDLPVL 309
+ + ++C+ K K I C +V ++ + Y PV
Sbjct: 348 IVKMNIICKLLDDDLKEMGSTKEGPWKHTIAIF--CETVSRVIQVTMALRQMGYNFKPVC 405
Query: 310 ELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
KQ QQ T EFCN +VCT++ +RG+D+ +V I + D Y+HR+
Sbjct: 406 SSVLKQ-QQAITLNDLEFCNIHG--VVCTNIMSRGIDVSSVKQTIIMEMSTDFPSYMHRI 462
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 64.7 bits (156), Expect = 3e-10
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 10/187 (5%)
Query: 139 IVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTK-GFIFKNLKALVIDEADRILEIG 197
+V G A+ Q+ L G ++L+ATPG L+D ++ K G F K LV+DEADR+L++G
Sbjct: 221 VVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMERGKIGLDF--CKYLVLDEADRMLDMG 278
Query: 198 FEDEMRQIIK--ILPNED-RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTAD 254
F ++ I++ +P + M+FSAT +++ LAR L +I + + ST++
Sbjct: 279 FGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQMLARDFLDE---YIFLAVGRVGSTSE 335
Query: 255 GLEQGYV-VCESDKRXXXXXXXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHG 313
+ Q V V E DKR + +VF+ + L + P +HG
Sbjct: 336 TITQEVVWVEEPDKRSFLLDLLNAPGKDSLTLVFVETKKGEDSLENFLYHEVYPCTSIHG 395
Query: 314 KQKQQKR 320
Q Q+ R
Sbjct: 396 DQSQRDR 402
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 64.7 bits (156), Expect = 3e-10
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 55/216 (25%)
Query: 154 MKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNED 213
M+ +I++ TPGR+ D L N + K +K V+DEAD +L F+D++ I ++L N +
Sbjct: 57 MEAPHIIMGTPGRVSDML-NWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQML-NSN 114
Query: 214 RQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXX 273
Q +L SA T +D LE
Sbjct: 115 TQVVLLSA----------------------------TIPSDVLE---------------- 130
Query: 274 XXXKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERG 333
K+ + + + + E L D V +HG Q++R E+ +
Sbjct: 131 -VTKKFMRDPIRILVKK--------EELTLKDFTVSAMHGDMDQKERDVVMREYRSGSSR 181
Query: 334 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
+L+ TD+ RG+D+ + +I +DPP + +YIHR+
Sbjct: 182 VLITTDLLPRGIDVQQLSLVINYDPPTNRENYIHRI 217
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 63.9 bits (154), Expect = 5e-10
Identities = 40/123 (32%), Positives = 63/123 (50%), Gaps = 4/123 (3%)
Query: 31 EVEGSFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLI 90
E+ SF D+ LS+ ++ I G + +A+Q R I P + G V+ A++G+GK F I
Sbjct: 13 EIVDSFDDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAI 72
Query: 91 PAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 150
++ + L K T +++ PT+ELA QI V L ++ + I G N R E
Sbjct: 73 LILQQI-ELDLK---ATQALLLAPTQELAQQIQKVVMALGDYMGASCHACIRGTNMRAEV 128
Query: 151 DKL 153
KL
Sbjct: 129 QKL 131
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 62.4 bits (150), Expect = 2e-09
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 39/217 (17%)
Query: 35 SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94
SF DLK K+ F Q IP L +V+ A TGSGKTL++ +P +E
Sbjct: 35 SFEDLKT---------KVPFDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVE 85
Query: 95 MLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGI--------------- 139
M + R+ G I++ P + L Q++ V RE+ + G+
Sbjct: 86 MA-----RGRSLFGAILV-PGKPLVRQVYRVVREIKHEGLKVVGVYGDGREDFLVEEGEK 139
Query: 140 ------VIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRI 193
I R + A+ L +LI TP +L + ++ +N+ LVIDEAD +
Sbjct: 140 GELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGLMSMSE---IRNVTHLVIDEADLL 196
Query: 194 LEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDL 230
+ I+ ++ ED FSAT V ++
Sbjct: 197 INPETVGVFASILSVIEMEDIHISCFSATMNEYVSEV 233
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 61.2 bits (147), Expect = 3e-09
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEM 95
FSDL L + + I G+ + T VQ +IP L G+D++ A+TGSGKT AFL+P +
Sbjct: 365 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 424
Query: 96 L------------HSLKFKPRNGTGVIVITPTRELALQI 122
+ S + + +V++PTREL+LQ+
Sbjct: 425 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 60.8 bits (146), Expect = 4e-09
Identities = 78/328 (23%), Positives = 135/328 (40%), Gaps = 53/328 (16%)
Query: 60 VQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN-------GTGVIVI 112
VQ +I + G+ ++ A TG GKT AFLIPAIE +L+ + N ++++
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEA--ALENRQSNCFESTKPSPSILIM 76
Query: 113 TPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM------KG-VNILIATPG 165
T L Q+F ++ I R + DKL+ KG +I T G
Sbjct: 77 ASTSALVDQLFNRCELILGLQCMDNVEPI----RDIKIDKLVANHPFTKGQCDIAFCTIG 132
Query: 166 RLLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPN---EDRQSMLFSA 221
+L ++ NLK +++DEAD++++ F ++ I+ L E+ QS FSA
Sbjct: 133 KLKATIE-CGDVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSA 191
Query: 222 TQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRXXXXXXXXKRNQK 281
T +++ + D KD + + + CE+ +R ++
Sbjct: 192 TYNKNANGTIALTVLQMRMLGEDDPCKDGPYNETIA---IFCETVQRVTQVTMTLRQLGY 248
Query: 282 KKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVA 341
F C+ + +L+ DL ++HG +VCT++
Sbjct: 249 N----FKPVCSMITKNQQLVTVNDLEFRKIHG---------------------VVCTNIL 283
Query: 342 ARGLDIPAVDWIIQFDPPDDPRDYIHRV 369
ARG+D+ +V I + D Y HR+
Sbjct: 284 ARGIDVSSVKHTIIMEMSADFDTYKHRI 311
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 57.8 bits (138), Expect = 4e-08
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 49 IGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTG 108
I +MG+ + + Q +IP L+G+D+L AK G+GK+ A IP ++ L LK ++
Sbjct: 64 IFEMGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRL-DLK---KDTIQ 119
Query: 109 VIVITPTRELALQIFGVARELMEFHSQTFGIVI--GGANRRQEADKLMKGVNILIATPGR 166
IVI PT ALQ+ + ++ + H +V+ GG N + +L V+++IA PGR
Sbjct: 120 TIVIVPTGGPALQVSQICIQVSK-HMGGVKVVMTTGGTNSGDDVLRLDDTVHMVIAAPGR 178
Query: 167 LLD 169
+L+
Sbjct: 179 ILN 181
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 55.5 bits (132), Expect = 2e-07
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 77 AAKTGSGKTLAFLIPAIEMLHSLKFKP-------RNGTGV--IVITPTRELALQIFGVAR 127
AA+TGSGKT+A+LIP I+ L + + R + I++ PT EL Q++
Sbjct: 163 AAETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELVDQVYETVS 222
Query: 128 ELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLD----HLQNTKGFIFKNLK 183
+ + R + + ++IL+ TPG+LL+ + + +
Sbjct: 223 KTKTLLGLNSFKWDKATSYRDLLENIKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKVG 282
Query: 184 ALVIDEADRILEIGFEDEMRQIIKILPN 211
+V+DEAD +L+ + +E IK +PN
Sbjct: 283 FVVLDEADTLLDRSWLEETHSAIKRIPN 310
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 50.4 bits (119), Expect = 6e-06
Identities = 55/186 (29%), Positives = 86/186 (45%), Gaps = 25/186 (13%)
Query: 55 TQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRN-------GT 107
T AVQ +I + G+ ++ A TG GKT AFLIPAIE +LK + N
Sbjct: 114 TTFNAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEA--ALKNRQSNCFEYTKPSP 171
Query: 108 GVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLM------KG-VNIL 160
++++ T L Q+F ++ I R + DKL+ KG +I
Sbjct: 172 SILIMASTSALVDQLFNRCELILGLQCMDNVEPI----RDIKIDKLVANHPFTKGQCDIA 227
Query: 161 IATPGRLLDHLQNTKGFIFKNLKALVIDEADRILE-IGFEDEMRQIIKILPN---EDRQS 216
T G+L ++ NLK +++DEAD++++ F ++ I+ L E+ QS
Sbjct: 228 FCTIGKLKATIE-CGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKEENLENLQS 286
Query: 217 MLFSAT 222
FSAT
Sbjct: 287 CFFSAT 292
>7296602 [A] KOG0334 RNA helicase
Length = 1059
Score = 50.4 bits (119), Expect = 6e-06
Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 22/197 (11%)
Query: 36 FSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKD--VLGAAKTGSGKTLAFLIPAI 93
F+++ L ++ + +G ++ +Q+ T P L G + SG+T A++ P
Sbjct: 56 FAEVSLLPDILETMRNLGLNRLLRLQSYTWPHLAGGSGHGAMIVGSPASGRTFAYIPPVC 115
Query: 94 EML---------------HSLKFKPRNGTGVIVITP----TRELALQIFGVARELMEFHS 134
+ H + R G +++ P +++ + R+ + S
Sbjct: 116 HAVSRALMDFTGQCEDVEHDISQPDRYGPIALILVPDLRRVHQVSAMCLALLRKAHKNDS 175
Query: 135 QTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFI-FKNLKALVIDEADRI 193
T + + Q KL+ GV L+ATP +L+ Q G + F L+ LV D+ D +
Sbjct: 176 VTLALNVSSTKSSQFFLKLLNGVGCLVATPAQLVWFWQEAPGLMRFPCLQFLVYDDVDLM 235
Query: 194 LEIGFEDEMRQIIKILP 210
+D + + +ILP
Sbjct: 236 SREQLQDVQQVLQEILP 252
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,940,687
Number of Sequences: 60738
Number of extensions: 1137666
Number of successful extensions: 3803
Number of sequences better than 1.0e-05: 242
Number of HSP's better than 0.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2680
Number of HSP's gapped (non-prelim): 302
length of query: 497
length of database: 30,389,216
effective HSP length: 111
effective length of query: 386
effective length of database: 23,647,298
effective search space: 9127857028
effective search space used: 9127857028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)